AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0401610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 120 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCGTTATGGTTTGGTTTC+CGG 0.173244 3_2:+28082568 Msa0401610:three_prime_UTR
CTTTAATTGTAAACTCTAAT+TGG 0.183153 3_2:-28082961 None:intergenic
AAATATAGAGAGAATTTAAA+TGG 0.184250 3_2:+28085649 Msa0401610:three_prime_UTR
GTATATATTTATCTCAATTC+TGG 0.228631 3_2:+28083572 Msa0401610:three_prime_UTR
TCATCAGGCTTCTACTCTTA+TGG 0.240846 3_2:+28083357 Msa0401610:three_prime_UTR
AAGTTTCAGCTTTAAGAATA+AGG 0.250889 3_2:+28084080 Msa0401610:three_prime_UTR
AATTTGAACTTAGTATATTA+TGG 0.279206 3_2:+28083111 Msa0401610:three_prime_UTR
ATATTATGGTTCAAGATTAA+AGG 0.283432 3_2:+28083125 Msa0401610:three_prime_UTR
TCAAAGATCCCTTTGCTTCC+TGG 0.287120 3_2:-28082836 None:intergenic
GCTGATTTATATTTATATTC+AGG 0.289412 3_2:-28083012 None:intergenic
TACAAGCTATTCTTCGAATT+AGG 0.290872 3_2:-28083967 None:intergenic
TGATGTTGGAAATTTATATA+AGG 0.298396 3_2:+28085581 Msa0401610:three_prime_UTR
GCTTACTCTTGCTAATGCTT+TGG 0.322777 3_2:+28082411 Msa0401610:three_prime_UTR
TGCAATGGTTCATTACATTC+AGG 0.343536 3_2:+28082679 Msa0401610:three_prime_UTR
CTAGGTGGTTGTTAGCAATC+TGG 0.344710 3_2:+28081602 Msa0401610:CDS
TCTAACGCGGGGAATAAATA+TGG 0.348893 3_2:-28083780 None:intergenic
TATTGTAATCTGTAGGATCT+TGG 0.354549 3_2:+28085423 Msa0401610:three_prime_UTR
TATTGTAATCTGTAGGATCT+TGG 0.354549 3_2:+28085457 Msa0401610:three_prime_UTR
GTTTCACTAATATCAAAATC+TGG 0.370567 3_2:-28083405 None:intergenic
CGAACCAGCGTCACGCCATC+AGG 0.377988 3_2:-28081830 None:intergenic
GTAGGTATTGGGATCTTGTT+TGG 0.385389 3_2:+28082807 Msa0401610:intron
TCGGACTCATTGATTGCATC+AGG 0.402153 3_2:+28081850 Msa0401610:three_prime_UTR
AATATAGAGAGAATTTAAAT+GGG 0.406386 3_2:+28085650 Msa0401610:three_prime_UTR
CGGATTGATCTTGACATGGC+TGG 0.407294 3_2:+28082296 Msa0401610:three_prime_UTR
ATATTTATTCCCCGCGTTAG+AGG 0.411499 3_2:+28083782 Msa0401610:three_prime_UTR
AATATCAAAATCTGGCCATC+CGG 0.419141 3_2:-28083397 None:intergenic
CTGATGGCGTGACGCTGGTT+CGG 0.420919 3_2:+28081831 Msa0401610:exon
AGTTTATAGGTTTCAGTACA+TGG 0.423641 3_2:+28083531 Msa0401610:intron
TATCTCAATTCTGGACCAAC+TGG 0.424195 3_2:+28083581 Msa0401610:three_prime_UTR
GTACTGGGTTCGTTATGGTT+TGG 0.424720 3_2:+28082561 Msa0401610:three_prime_UTR
ACTGGGTTCGTGACGTGATA+TGG 0.432550 3_2:+28081784 Msa0401610:CDS
TCCCCTTAAATATTGACAAA+AGG 0.433210 3_2:+28083237 Msa0401610:three_prime_UTR
CATTTACAAAATGTGTGAAC+TGG 0.436677 3_2:-28082436 None:intergenic
GTTATGACCCACTTTGGCTA+TGG 0.436788 3_2:+28083603 Msa0401610:three_prime_UTR
TATAGTTCAAAATGAGGATC+AGG 0.443469 3_2:+28083163 Msa0401610:three_prime_UTR
GAATTGAATGTGTAGGTATT+GGG 0.449053 3_2:+28082796 Msa0401610:intron
CGAAGTTATAGTTCAAAATG+AGG 0.453490 3_2:+28083157 Msa0401610:three_prime_UTR
TTATGACCCACTTTGGCTAT+GGG 0.455457 3_2:+28083604 Msa0401610:three_prime_UTR
CTAACGTTGCCCCGTTGATC+CGG 0.455749 3_2:-28083816 None:intergenic
CGTCATCGTTCGCCGTCTCT+AGG 0.462516 3_2:+28081584 Msa0401610:CDS
GATCAACGGGGCAACGTTAG+TGG 0.462859 3_2:+28083819 Msa0401610:three_prime_UTR
AAATGTCTTCAGTTAATTGT+GGG 0.467301 3_2:-28084018 None:intergenic
ATTAGAGTTTACAATTAAAG+TGG 0.469319 3_2:+28082964 Msa0401610:three_prime_UTR
TAGTGCCTCTGCAACACCTC+TGG 0.474866 3_2:-28085303 None:intergenic
ATGTGGGATCCTTCTCTTGA+GGG 0.478112 3_2:+28083206 Msa0401610:three_prime_UTR
TGCGTCTCTGATAAGTGCAC+AGG 0.478736 3_2:+28085338 Msa0401610:three_prime_UTR
AGGTTTCAGTACATGGAAGA+AGG 0.485879 3_2:+28083538 Msa0401610:intron
AAAATGTCTTCAGTTAATTG+TGG 0.486724 3_2:-28084019 None:intergenic
GGAATTTATGAGCACTTACC+CGG 0.490203 3_2:+28083378 Msa0401610:three_prime_UTR
AAAACATACACTAACATCAT+GGG 0.494562 3_2:-28085548 None:intergenic
ATGGTATGCAGAGGCGAGAA+AGG 0.495213 3_2:+28081803 Msa0401610:CDS
TTCAAACTGCACTTGTCTGT+TGG 0.502587 3_2:+28082222 Msa0401610:three_prime_UTR
TAGCTTGTAATGTTGCTAAG+AGG 0.503900 3_2:+28083981 Msa0401610:three_prime_UTR
GATCTTGTTTGGAGTGCACC+AGG 0.504829 3_2:+28082818 Msa0401610:three_prime_UTR
GAATTGAGATAAATATATAC+AGG 0.506382 3_2:-28083569 None:intergenic
CCGTCGCTTCCTCCTTCCTT+CGG 0.510379 3_2:+28081471 Msa0401610:CDS
GGAGATTACTTGTCTTAGAC+AGG 0.510984 3_2:+28083841 Msa0401610:three_prime_UTR
GTAACAAAGGAAAGTAGTAT+TGG 0.512968 3_2:-28082867 None:intergenic
AAATCACATACTTTGTTCCC+TGG 0.513655 3_2:-28082460 None:intergenic
TAATTGTAAACTCTAATTGG+TGG 0.515183 3_2:-28082958 None:intergenic
TACTTTCCTTTGTTACTACC+AGG 0.521592 3_2:+28082874 Msa0401610:three_prime_UTR
CAATGTGATAAACTTTGTAC+AGG 0.525680 3_2:+28084827 Msa0401610:three_prime_UTR
ATATCAAAATCTGGCCATCC+GGG 0.534719 3_2:-28083396 None:intergenic
TAATAGCAAAAGACTCATCC+TGG 0.535124 3_2:-28082892 None:intergenic
TTGTAAATGGCCAGGGAACA+TGG 0.536074 3_2:+28082482 Msa0401610:three_prime_UTR
CAACTGGTTATGACCCACTT+TGG 0.536890 3_2:+28083597 Msa0401610:three_prime_UTR
TGGAGTGCACCAGGAAGCAA+AGG 0.545156 3_2:+28082827 Msa0401610:three_prime_UTR
CAATCTTATAAGTTCGCTTG+AGG 0.549363 3_2:+28083073 Msa0401610:three_prime_UTR
TTGAATTTATTGTAATCTGT+AGG 0.550964 3_2:+28085450 Msa0401610:three_prime_UTR
ATCAACGGGGCAACGTTAGT+GGG 0.558798 3_2:+28083820 Msa0401610:three_prime_UTR
TGATGACAGAAGTTCAAAGT+TGG 0.558995 3_2:+28083757 Msa0401610:three_prime_UTR
AATCCCTGATGGCGTGACGC+TGG 0.559602 3_2:+28081826 Msa0401610:exon
CTGGTTTGAGAGCTAAGATA+AGG 0.560800 3_2:+28082315 Msa0401610:three_prime_UTR
TTAGAGTTTACAATTAAAGT+GGG 0.564182 3_2:+28082965 Msa0401610:three_prime_UTR
AACTAACAAACCCCAAACTC+CGG 0.565899 3_2:-28081645 None:intergenic
CAAACAGGGACGCCGAAGGA+AGG 0.569818 3_2:-28081483 None:intergenic
AGGAGGAAGCGACGGTGGTG+CGG 0.573939 3_2:-28081463 None:intergenic
AGTAAGCATACCATGTTCCC+TGG 0.576511 3_2:-28082492 None:intergenic
GCATCCTCCCATAGCCAAAG+TGG 0.578225 3_2:-28083611 None:intergenic
CGTTATGGTTTGGTTTCCGG+TGG 0.581466 3_2:+28082571 Msa0401610:three_prime_UTR
AGACCAAACAGGGACGCCGA+AGG 0.582809 3_2:-28081487 None:intergenic
TTAGCAAGAGTAAGCATGAG+AGG 0.585510 3_2:-28082403 None:intergenic
GCTTTCATTCAGAAGAATGT+GGG 0.586990 3_2:+28083190 Msa0401610:three_prime_UTR
ACAGGGACGCCGAAGGAAGG+AGG 0.588318 3_2:-28081480 None:intergenic
ATTTACAAAATGTGTGAACT+GGG 0.591062 3_2:-28082435 None:intergenic
CTTGTTGAATATGATTCCAG+AGG 0.593773 3_2:+28085287 Msa0401610:three_prime_UTR
AGCTTTCATTCAGAAGAATG+TGG 0.594635 3_2:+28083189 Msa0401610:three_prime_UTR
ACAAACTTTCCCTCAAGAGA+AGG 0.598936 3_2:-28083215 None:intergenic
AGTTCAAAATGAGGATCAGG+TGG 0.600536 3_2:+28083166 Msa0401610:three_prime_UTR
CTGTGAGTTATTACACGGCA+AGG 0.607421 3_2:+28085387 Msa0401610:three_prime_UTR
CTAGCCTGTGAGTTATTACA+CGG 0.608774 3_2:+28085382 Msa0401610:three_prime_UTR
GAGACTGAACAAAACACCAC+CGG 0.610159 3_2:-28082587 None:intergenic
CCGAAGGAAGGAGGAAGCGA+CGG 0.611461 3_2:-28081471 None:intergenic
TTTATGAGCACTTACCCGGA+TGG 0.612291 3_2:+28083382 Msa0401610:three_prime_UTR
TAAATCAGTGTTATCTCACA+AGG 0.615512 3_2:-28085500 None:intergenic
TGACCCACTTTGGCTATGGG+AGG 0.621045 3_2:+28083607 Msa0401610:three_prime_UTR
GGCGAGAAAGGAATCCCTGA+TGG 0.621367 3_2:+28081815 Msa0401610:CDS
ACTCATCCTGGTAGTAACAA+AGG 0.622316 3_2:-28082880 None:intergenic
CGTGTAATAACTCACAGGCT+AGG 0.622510 3_2:-28085381 None:intergenic
GAACCAGCGTCACGCCATCA+GGG 0.622554 3_2:-28081829 None:intergenic
CTTGCCGTGTAATAACTCAC+AGG 0.626253 3_2:-28085386 None:intergenic
CAAAGTGGGTCATAACCAGT+TGG 0.629322 3_2:-28083596 None:intergenic
AATGTGGGATCCTTCTCTTG+AGG 0.629331 3_2:+28083205 Msa0401610:three_prime_UTR
CTGTACAAAGTTTATCACAT+TGG 0.639047 3_2:-28084826 None:intergenic
TTGACATCTAAGACAGACAA+GGG 0.639749 3_2:+28082267 Msa0401610:three_prime_UTR
TGCTAACAACCACCTAGAGA+CGG 0.641462 3_2:-28081596 None:intergenic
TGATTCCAGAGGTGTTGCAG+AGG 0.641649 3_2:+28085298 Msa0401610:three_prime_UTR
AAGGAAGGAGGAAGCGACGG+TGG 0.642914 3_2:-28081468 None:intergenic
GGAGTGCACCAGGAAGCAAA+GGG 0.648154 3_2:+28082828 Msa0401610:three_prime_UTR
TCATTATTAAGAATTTGACA+TGG 0.649138 3_2:-28082920 None:intergenic
TGCAAGTGTCTACAAACACA+TGG 0.653659 3_2:+28084773 Msa0401610:three_prime_UTR
CATCGTTCGCCGTCTCTAGG+TGG 0.655761 3_2:+28081587 Msa0401610:CDS
GTAATAACTCACAGGCTAGG+TGG 0.658204 3_2:-28085378 None:intergenic
AAACATACACTAACATCATG+GGG 0.662611 3_2:-28085547 None:intergenic
CATCCTCCCATAGCCAAAGT+GGG 0.663163 3_2:-28083610 None:intergenic
ATATAGAGAGAATTTAAATG+GGG 0.666231 3_2:+28085651 Msa0401610:three_prime_UTR
GCGTCTCTGATAAGTGCACA+GGG 0.673628 3_2:+28085339 Msa0401610:three_prime_UTR
TGACGTGATATGGTATGCAG+AGG 0.675040 3_2:+28081794 Msa0401610:CDS
AGTAGAAGCCTGATGAACCA+CGG 0.701660 3_2:-28083350 None:intergenic
TTTGACATCTAAGACAGACA+AGG 0.726090 3_2:+28082266 Msa0401610:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTATTTTACTGATG+AGG + chr3_2:28082341-28082360 Msa0401610:intron 15.0%
!! AATTTGAACTTAGTATATTA+TGG + chr3_2:28083111-28083130 Msa0401610:three_prime_UTR 15.0%
!!! ATTTTCAAAGTATCTTAATT+TGG + chr3_2:28084048-28084067 Msa0401610:three_prime_UTR 15.0%
!! TTAGTTATTAGTATAAATGA+GGG - chr3_2:28084231-28084250 None:intergenic 15.0%
!! AAAGTATAAATAATTCAACA+AGG + chr3_2:28084541-28084560 Msa0401610:intron 15.0%
!!! TGTAATTTAAAGTTTGTTTT+TGG + chr3_2:28084715-28084734 Msa0401610:intron 15.0%
!!! TTTTTATTTGAATTTTCTGA+AGG + chr3_2:28084902-28084921 Msa0401610:intron 15.0%
!!! TTTTATTTGAATTTTCTGAA+GGG + chr3_2:28084903-28084922 Msa0401610:intron 15.0%
!! AATTGAATAAGTTATTTGAT+TGG - chr3_2:28085241-28085260 None:intergenic 15.0%
!! AAATATAGAGAGAATTTAAA+TGG + chr3_2:28085649-28085668 Msa0401610:three_prime_UTR 15.0%
!! AATATAGAGAGAATTTAAAT+GGG + chr3_2:28085650-28085669 Msa0401610:three_prime_UTR 15.0%
!! AAAAATCTTGGAATTTAAAT+CGG - chr3_2:28085681-28085700 None:intergenic 15.0%
!! AGTACTAGTAAAAATGTATA+AGG + chr3_2:28082066-28082085 Msa0401610:intron 20.0%
!!! AAAGTATGTGATTTTGTAAA+TGG + chr3_2:28082469-28082488 Msa0401610:three_prime_UTR 20.0%
!! ATTCAGATTCCATTTAAAAA+GGG - chr3_2:28082780-28082799 None:intergenic 20.0%
!! AATTCAGATTCCATTTAAAA+AGG - chr3_2:28082781-28082800 None:intergenic 20.0%
!! TCATTATTAAGAATTTGACA+TGG - chr3_2:28082923-28082942 None:intergenic 20.0%
!! CTTTAATTGTAAACTCTAAT+TGG - chr3_2:28082964-28082983 None:intergenic 20.0%
!! ATTAGAGTTTACAATTAAAG+TGG + chr3_2:28082964-28082983 Msa0401610:three_prime_UTR 20.0%
!! TTAGAGTTTACAATTAAAGT+GGG + chr3_2:28082965-28082984 Msa0401610:three_prime_UTR 20.0%
!!! GCTGATTTATATTTATATTC+AGG - chr3_2:28083015-28083034 None:intergenic 20.0%
!! AATAGAACAGTTAAGAAAAA+AGG - chr3_2:28083051-28083070 None:intergenic 20.0%
!!! TTTTTTCTTAACTGTTCTAT+TGG + chr3_2:28083050-28083069 Msa0401610:three_prime_UTR 20.0%
!! ATATTATGGTTCAAGATTAA+AGG + chr3_2:28083125-28083144 Msa0401610:three_prime_UTR 20.0%
!!! TACCTTTTGTCAATATTTAA+GGG - chr3_2:28083242-28083261 None:intergenic 20.0%
!!! TTACCTTTTGTCAATATTTA+AGG - chr3_2:28083243-28083262 None:intergenic 20.0%
!! AAATATTGACAAAAGGTAAT+TGG + chr3_2:28083244-28083263 Msa0401610:intron 20.0%
!! TTCACAAATATTAATCCAAT+AGG - chr3_2:28083305-28083324 None:intergenic 20.0%
!! ATTGGATTAATATTTGTGAA+TGG + chr3_2:28083305-28083324 Msa0401610:intron 20.0%
!!! ATTTTGATATTAGTGAAACA+AGG + chr3_2:28083409-28083428 Msa0401610:three_prime_UTR 20.0%
!!! ACTTTTATTTATGTTGAAGA+TGG + chr3_2:28083462-28083481 Msa0401610:intron 20.0%
!! TATAAACTTGGTTGTTAAAT+TGG - chr3_2:28083519-28083538 None:intergenic 20.0%
!! AATTTAACAACCAAGTTTAT+AGG + chr3_2:28083518-28083537 Msa0401610:intron 20.0%
!! GAATTGAGATAAATATATAC+AGG - chr3_2:28083572-28083591 None:intergenic 20.0%
!! GTATATATTTATCTCAATTC+TGG + chr3_2:28083572-28083591 Msa0401610:three_prime_UTR 20.0%
!!! AGGTTTTTAATTTGCATTAT+CGG + chr3_2:28083897-28083916 Msa0401610:intron 20.0%
!! TTTATCATTTGAATTTGTGT+AGG + chr3_2:28084133-28084152 Msa0401610:intron 20.0%
!! TATGATTGGATATGATAAAT+TGG + chr3_2:28084189-28084208 Msa0401610:intron 20.0%
!! CTTAGTTATTAGTATAAATG+AGG - chr3_2:28084232-28084251 None:intergenic 20.0%
!!! ATTTAAAGTTTGTTTTTGGT+TGG + chr3_2:28084719-28084738 Msa0401610:intron 20.0%
!!! GTTGTTCATATGATTATTTT+TGG + chr3_2:28085019-28085038 Msa0401610:intron 20.0%
!!! ATTTTTTTACCCTTTTATGT+AGG + chr3_2:28085258-28085277 Msa0401610:intron 20.0%
!!! GTTTTATTATTGTAATCTGT+AGG + chr3_2:28085416-28085435 Msa0401610:three_prime_UTR 20.0%
!! TTGAATTTATTGTAATCTGT+AGG + chr3_2:28085450-28085469 Msa0401610:three_prime_UTR 20.0%
!!! TTTTTTATTAGAACTGATGT+TGG + chr3_2:28085567-28085586 Msa0401610:three_prime_UTR 20.0%
!! TGATGTTGGAAATTTATATA+AGG + chr3_2:28085581-28085600 Msa0401610:three_prime_UTR 20.0%
!! ATATAGAGAGAATTTAAATG+GGG + chr3_2:28085651-28085670 Msa0401610:three_prime_UTR 20.0%
! AGTGGTTATTTGTTCATTTA+TGG - chr3_2:28082040-28082059 None:intergenic 25.0%
! AAGAAAAATTAAACCTGCTA+TGG - chr3_2:28082159-28082178 None:intergenic 25.0%
!! AATTTTTCTTGTCAGATACT+TGG + chr3_2:28082169-28082188 Msa0401610:three_prime_UTR 25.0%
! ATTTACAAAATGTGTGAACT+GGG - chr3_2:28082438-28082457 None:intergenic 25.0%
! TATAGCAAAAAATCACAAGT+GGG - chr3_2:28082710-28082729 None:intergenic 25.0%
! TAATTGTAAACTCTAATTGG+TGG - chr3_2:28082961-28082980 None:intergenic 25.0%
!! ACCTTTTGTCAATATTTAAG+GGG - chr3_2:28083241-28083260 None:intergenic 25.0%
! GTTTCACTAATATCAAAATC+TGG - chr3_2:28083408-28083427 None:intergenic 25.0%
! TTTATTTATGTTGAAGATGG+TGG + chr3_2:28083465-28083484 Msa0401610:intron 25.0%
!!! TGGCAATGATTTTTTACTTT+TGG + chr3_2:28083485-28083504 Msa0401610:intron 25.0%
!!! TTTTAAAAAATCCTCTAACG+CGG - chr3_2:28083796-28083815 None:intergenic 25.0%
!!! GTTAGAGGATTTTTTAAAAC+CGG + chr3_2:28083797-28083816 Msa0401610:three_prime_UTR 25.0%
!!! ATTTTTTAAAACCGGATCAA+CGG + chr3_2:28083805-28083824 Msa0401610:three_prime_UTR 25.0%
!!! TTTTTCCTAGTTTTTTCTTG+AGG + chr3_2:28083877-28083896 Msa0401610:intron 25.0%
! AAAAACCTCAAGAAAAAACT+AGG - chr3_2:28083885-28083904 None:intergenic 25.0%
!!! GGTTTTTAATTTGCATTATC+GGG + chr3_2:28083898-28083917 Msa0401610:intron 25.0%
! AAATGTCTTCAGTTAATTGT+GGG - chr3_2:28084021-28084040 None:intergenic 25.0%
! AAAATGTCTTCAGTTAATTG+TGG - chr3_2:28084022-28084041 None:intergenic 25.0%
!!! AAGTTTCAGCTTTAAGAATA+AGG + chr3_2:28084080-28084099 Msa0401610:three_prime_UTR 25.0%
! AAAGACCTTATGATTATGAT+TGG + chr3_2:28084175-28084194 Msa0401610:intron 25.0%
! CATATCCAATCATAATCATA+AGG - chr3_2:28084183-28084202 None:intergenic 25.0%
! CAAAGTATGGTATTTATGAT+AGG - chr3_2:28084507-28084526 None:intergenic 25.0%
! TTTAAATTACAAGACGCTAA+AGG - chr3_2:28084706-28084725 None:intergenic 25.0%
!!! TTGTTTCATTATTTTTCCAG+AGG + chr3_2:28084747-28084766 Msa0401610:intron 25.0%
! AAAACATACACTAACATCAT+GGG - chr3_2:28085551-28085570 None:intergenic 25.0%
! AAAAACATACACTAACATCA+TGG - chr3_2:28085552-28085571 None:intergenic 25.0%
AGAACAGTTGAAAATCAACA+AGG - chr3_2:28081513-28081532 None:intergenic 30.0%
GGTTATTTGTTCATTTATGG+TGG - chr3_2:28082037-28082056 None:intergenic 30.0%
TTTACTAGTACTCAATCAAG+TGG - chr3_2:28082058-28082077 None:intergenic 30.0%
AAAATTAAACCTGCTATGGA+GGG - chr3_2:28082155-28082174 None:intergenic 30.0%
AAAAATTAAACCTGCTATGG+AGG - chr3_2:28082156-28082175 None:intergenic 30.0%
CATTTACAAAATGTGTGAAC+TGG - chr3_2:28082439-28082458 None:intergenic 30.0%
! CAGTTCACACATTTTGTAAA+TGG + chr3_2:28082437-28082456 Msa0401610:three_prime_UTR 30.0%
!! TTGTTTCGTTTTTGCTTTTG+TGG + chr3_2:28082516-28082535 Msa0401610:three_prime_UTR 30.0%
!!! TGCTCTTTTTTATCAGAGAT+TGG + chr3_2:28082631-28082650 Msa0401610:three_prime_UTR 30.0%
!!! GCTCTTTTTTATCAGAGATT+GGG + chr3_2:28082632-28082651 Msa0401610:three_prime_UTR 30.0%
!!! CTCTTTTTTATCAGAGATTG+GGG + chr3_2:28082633-28082652 Msa0401610:three_prime_UTR 30.0%
!!! AACTTGTTACTCTTTTGCAA+TGG + chr3_2:28082664-28082683 Msa0401610:three_prime_UTR 30.0%
CTATAGCAAAAAATCACAAG+TGG - chr3_2:28082711-28082730 None:intergenic 30.0%
! TTGAATAGATTGCTGATTAG+AGG + chr3_2:28082747-28082766 Msa0401610:intron 30.0%
! GGAAACTATCCCTTTTTAAA+TGG + chr3_2:28082768-28082787 Msa0401610:intron 30.0%
TGAATTGAATGTGTAGGTAT+TGG + chr3_2:28082795-28082814 Msa0401610:intron 30.0%
GAATTGAATGTGTAGGTATT+GGG + chr3_2:28082796-28082815 Msa0401610:intron 30.0%
GTAACAAAGGAAAGTAGTAT+TGG - chr3_2:28082870-28082889 None:intergenic 30.0%
AACAGTTAAGAAAAAAGGAG+GGG - chr3_2:28083046-28083065 None:intergenic 30.0%
GAACAGTTAAGAAAAAAGGA+GGG - chr3_2:28083047-28083066 None:intergenic 30.0%
AGAACAGTTAAGAAAAAAGG+AGG - chr3_2:28083048-28083067 None:intergenic 30.0%
CGAAGTTATAGTTCAAAATG+AGG + chr3_2:28083157-28083176 Msa0401610:three_prime_UTR 30.0%
TATAGTTCAAAATGAGGATC+AGG + chr3_2:28083163-28083182 Msa0401610:three_prime_UTR 30.0%
TCCCCTTAAATATTGACAAA+AGG + chr3_2:28083237-28083256 Msa0401610:three_prime_UTR 30.0%
!! TGAATAATGCGTTTTTGAAG+TGG + chr3_2:28083277-28083296 Msa0401610:intron 30.0%
TGTACTGAAACCTATAAACT+TGG - chr3_2:28083531-28083550 None:intergenic 30.0%
AGTTTATAGGTTTCAGTACA+TGG + chr3_2:28083531-28083550 Msa0401610:intron 30.0%
! TCTCTTGTACTTTTCTTGTT+AGG + chr3_2:28083664-28083683 Msa0401610:intron 30.0%
TTTAAAAAATCCTCTAACGC+GGG - chr3_2:28083795-28083814 None:intergenic 30.0%
!!! TTTTTTAAAACCGGATCAAC+GGG + chr3_2:28083806-28083825 Msa0401610:three_prime_UTR 30.0%
!! CTTATTGTTTTGTCAGTTCA+TGG + chr3_2:28083928-28083947 Msa0401610:intron 30.0%
TACAAGCTATTCTTCGAATT+AGG - chr3_2:28083970-28083989 None:intergenic 30.0%
AGTGTCTTGAATTATCTCTT+AGG - chr3_2:28084268-28084287 None:intergenic 30.0%
! TTCCCTTTAAGTCTTATGAA+AGG + chr3_2:28084304-28084323 Msa0401610:intron 30.0%
CTCCTTTCATAAGACTTAAA+GGG - chr3_2:28084309-28084328 None:intergenic 30.0%
ACTCCTTTCATAAGACTTAA+AGG - chr3_2:28084310-28084329 None:intergenic 30.0%
CAATAAACATTTACTCCAAG+TGG + chr3_2:28084377-28084396 Msa0401610:intron 30.0%
TACAGAAAAGACACAAAGTA+TGG - chr3_2:28084520-28084539 None:intergenic 30.0%
CAATATCTCAAAACAAAAGC+TGG - chr3_2:28084614-28084633 None:intergenic 30.0%
CTGTACAAAGTTTATCACAT+TGG - chr3_2:28084829-28084848 None:intergenic 30.0%
CAATGTGATAAACTTTGTAC+AGG + chr3_2:28084827-28084846 Msa0401610:three_prime_UTR 30.0%
AAAATTCCCACCTATTGTTT+GGG + chr3_2:28085079-28085098 Msa0401610:intron 30.0%
CAGTAGTTTCACTAAAGAAT+TGG + chr3_2:28085108-28085127 Msa0401610:intron 30.0%
GCATTTGATAAACTGACATT+TGG + chr3_2:28085155-28085174 Msa0401610:intron 30.0%
! TTTTTACCCTTTTATGTAGG+AGG + chr3_2:28085261-28085280 Msa0401610:intron 30.0%
AAGTAACCTCCTACATAAAA+GGG - chr3_2:28085270-28085289 None:intergenic 30.0%
TATTGTAATCTGTAGGATCT+TGG + chr3_2:28085423-28085442 Msa0401610:three_prime_UTR 30.0%
TATTGTAATCTGTAGGATCT+TGG + chr3_2:28085423-28085442 Msa0401610:three_prime_UTR 30.0%
TAAATCAGTGTTATCTCACA+AGG - chr3_2:28085503-28085522 None:intergenic 30.0%
AAACATACACTAACATCATG+GGG - chr3_2:28085550-28085569 None:intergenic 30.0%
!!! TTAGCAATCTGGTTTTCTTC+AGG + chr3_2:28081613-28081632 Msa0401610:CDS 35.0%
!! CAGTTTCGTTTTTGCTTTTG+TGG + chr3_2:28081737-28081756 Msa0401610:intron 35.0%
!! TTTCGTTTTTGCTTTTGTGG+TGG + chr3_2:28081740-28081759 Msa0401610:CDS 35.0%
AGATGTTGAATGTAAACCCT+TGG - chr3_2:28082117-28082136 None:intergenic 35.0%
! TTTGACATCTAAGACAGACA+AGG + chr3_2:28082266-28082285 Msa0401610:three_prime_UTR 35.0%
! TTGACATCTAAGACAGACAA+GGG + chr3_2:28082267-28082286 Msa0401610:three_prime_UTR 35.0%
! AAGACAGACAAGGGATTTTT+CGG + chr3_2:28082276-28082295 Msa0401610:three_prime_UTR 35.0%
! TTTTCGGATTGATCTTGACA+TGG + chr3_2:28082292-28082311 Msa0401610:three_prime_UTR 35.0%
! ACACATTTTGTAAATGGCCA+GGG + chr3_2:28082443-28082462 Msa0401610:three_prime_UTR 35.0%
AAATCACATACTTTGTTCCC+TGG - chr3_2:28082463-28082482 None:intergenic 35.0%
! ATGTGATTTTGTAAATGGCC+AGG + chr3_2:28082474-28082493 Msa0401610:three_prime_UTR 35.0%
! TGTGATTTTGTAAATGGCCA+GGG + chr3_2:28082475-28082494 Msa0401610:three_prime_UTR 35.0%
!! TTTCGTTTTTGCTTTTGTGG+TGG + chr3_2:28081740-28081759 Msa0401610:CDS 35.0%
!! TATCGTTGGTTGTTTTGTAC+TGG + chr3_2:28082545-28082564 Msa0401610:three_prime_UTR 35.0%
!! ATCGTTGGTTGTTTTGTACT+GGG + chr3_2:28082546-28082565 Msa0401610:three_prime_UTR 35.0%
!!! TTTTTTATCAGAGATTGGGG+TGG + chr3_2:28082636-28082655 Msa0401610:three_prime_UTR 35.0%
TGCAATGGTTCATTACATTC+AGG + chr3_2:28082679-28082698 Msa0401610:three_prime_UTR 35.0%
GGAATCTGAATTGAATGTGT+AGG + chr3_2:28082789-28082808 Msa0401610:intron 35.0%
TACTTTCCTTTGTTACTACC+AGG + chr3_2:28082874-28082893 Msa0401610:three_prime_UTR 35.0%
TAATAGCAAAAGACTCATCC+TGG - chr3_2:28082895-28082914 None:intergenic 35.0%
TTAAGAAAAAAGGAGGGGAT+TGG - chr3_2:28083041-28083060 None:intergenic 35.0%
CAATCTTATAAGTTCGCTTG+AGG + chr3_2:28083073-28083092 Msa0401610:three_prime_UTR 35.0%
AGCTTTCATTCAGAAGAATG+TGG + chr3_2:28083189-28083208 Msa0401610:three_prime_UTR 35.0%
GCTTTCATTCAGAAGAATGT+GGG + chr3_2:28083190-28083209 Msa0401610:three_prime_UTR 35.0%
!!! GTTTTTGAAGTGGTACCTAT+TGG + chr3_2:28083287-28083306 Msa0401610:intron 35.0%
GGAGCAAAATGAATCTGAAA+TGG - chr3_2:28083332-28083351 None:intergenic 35.0%
AATATCAAAATCTGGCCATC+CGG - chr3_2:28083400-28083419 None:intergenic 35.0%
! AGTACATGGAAGAAGGTTTT+TGG + chr3_2:28083545-28083564 Msa0401610:three_prime_UTR 35.0%
ATGGGAGGATGCAAAAATAA+AGG + chr3_2:28083622-28083641 Msa0401610:three_prime_UTR 35.0%
! GAAAAGTACAAGAGACACAT+AGG - chr3_2:28083659-28083678 None:intergenic 35.0%
! CTTGTACTTTTCTTGTTAGG+AGG + chr3_2:28083667-28083686 Msa0401610:intron 35.0%
GGCTGATAGTATAGTACATT+TGG + chr3_2:28083688-28083707 Msa0401610:intron 35.0%
TGATGACAGAAGTTCAAAGT+TGG + chr3_2:28083757-28083776 Msa0401610:three_prime_UTR 35.0%
TTAAAAAATCCTCTAACGCG+GGG - chr3_2:28083794-28083813 None:intergenic 35.0%
!!! TTTTTAAAACCGGATCAACG+GGG + chr3_2:28083807-28083826 Msa0401610:three_prime_UTR 35.0%
! TAGCTTGTAATGTTGCTAAG+AGG + chr3_2:28083981-28084000 Msa0401610:three_prime_UTR 35.0%
TGGATATGATAAATTGGCGA+TGG + chr3_2:28084195-28084214 Msa0401610:intron 35.0%
AAAGGAGTTTGTGCCTTAAT+CGG + chr3_2:28084322-28084341 Msa0401610:intron 35.0%
TTCCTACAATTAACACCACT+TGG - chr3_2:28084395-28084414 None:intergenic 35.0%
! TGACAGCTTTAACAATGTAG+TGG - chr3_2:28084439-28084458 None:intergenic 35.0%
AAATTACAAGACGCTAAAGG+CGG - chr3_2:28084703-28084722 None:intergenic 35.0%
ACCAACTAAAGCAGGTAAAT+AGG - chr3_2:28084979-28084998 None:intergenic 35.0%
CAAAATTCCCACCTATTGTT+TGG + chr3_2:28085078-28085097 Msa0401610:intron 35.0%
! AAACTGACATTTGGAGCTAA+TGG + chr3_2:28085164-28085183 Msa0401610:intron 35.0%
! ATTTGGAGCTAATGGTTCAT+AGG + chr3_2:28085172-28085191 Msa0401610:intron 35.0%
CAAGTAACCTCCTACATAAA+AGG - chr3_2:28085271-28085290 None:intergenic 35.0%
CTTGTTGAATATGATTCCAG+AGG + chr3_2:28085287-28085306 Msa0401610:three_prime_UTR 35.0%
ATCAACAAGGAGACCAAACA+GGG - chr3_2:28081500-28081519 None:intergenic 40.0%
AATCAACAAGGAGACCAAAC+AGG - chr3_2:28081501-28081520 None:intergenic 40.0%
!! TTTCTTCAGGTTTTCTTCGC+CGG + chr3_2:28081626-28081645 Msa0401610:CDS 40.0%
AACTAACAAACCCCAAACTC+CGG - chr3_2:28081648-28081667 None:intergenic 40.0%
!! TATCGTCGGTTGTTTTGTAC+TGG + chr3_2:28081766-28081785 Msa0401610:CDS 40.0%
!! ATCGTCGGTTGTTTTGTACT+GGG + chr3_2:28081767-28081786 Msa0401610:CDS 40.0%
!! TGGACGTTGTCTTTAGTTCT+GGG + chr3_2:28081967-28081986 Msa0401610:intron 40.0%
AATGTAAACCCTTGGCAACA+GGG - chr3_2:28082109-28082128 None:intergenic 40.0%
TTCAAACTGCACTTGTCTGT+TGG + chr3_2:28082222-28082241 Msa0401610:three_prime_UTR 40.0%
! CTGGTTTGAGAGCTAAGATA+AGG + chr3_2:28082315-28082334 Msa0401610:three_prime_UTR 40.0%
TTAGCAAGAGTAAGCATGAG+AGG - chr3_2:28082406-28082425 None:intergenic 40.0%
GCTTACTCTTGCTAATGCTT+TGG + chr3_2:28082411-28082430 Msa0401610:three_prime_UTR 40.0%
! CACACATTTTGTAAATGGCC+AGG + chr3_2:28082442-28082461 Msa0401610:three_prime_UTR 40.0%
! GTTTTGTACTGGGTTCGTTA+TGG + chr3_2:28082556-28082575 Msa0401610:three_prime_UTR 40.0%
!! GTTCGTTATGGTTTGGTTTC+CGG + chr3_2:28082568-28082587 Msa0401610:three_prime_UTR 40.0%
!! GTAGGTATTGGGATCTTGTT+TGG + chr3_2:28082807-28082826 Msa0401610:intron 40.0%
ACTCATCCTGGTAGTAACAA+AGG - chr3_2:28082883-28082902 None:intergenic 40.0%
AGTTCAAAATGAGGATCAGG+TGG + chr3_2:28083166-28083185 Msa0401610:three_prime_UTR 40.0%
ACAAACTTTCCCTCAAGAGA+AGG - chr3_2:28083218-28083237 None:intergenic 40.0%
! TTCAGATTCATTTTGCTCCG+TGG + chr3_2:28083333-28083352 Msa0401610:intron 40.0%
TCATCAGGCTTCTACTCTTA+TGG + chr3_2:28083357-28083376 Msa0401610:three_prime_UTR 40.0%
GGAATTTATGAGCACTTACC+CGG + chr3_2:28083378-28083397 Msa0401610:three_prime_UTR 40.0%
ATATCAAAATCTGGCCATCC+GGG - chr3_2:28083399-28083418 None:intergenic 40.0%
AGGTTTCAGTACATGGAAGA+AGG + chr3_2:28083538-28083557 Msa0401610:intron 40.0%
TATCTCAATTCTGGACCAAC+TGG + chr3_2:28083581-28083600 Msa0401610:three_prime_UTR 40.0%
TTATGACCCACTTTGGCTAT+GGG + chr3_2:28083604-28083623 Msa0401610:three_prime_UTR 40.0%
TCTAACGCGGGGAATAAATA+TGG - chr3_2:28083783-28083802 None:intergenic 40.0%
ATATTTATTCCCCGCGTTAG+AGG + chr3_2:28083782-28083801 Msa0401610:three_prime_UTR 40.0%
GGAGATTACTTGTCTTAGAC+AGG + chr3_2:28083841-28083860 Msa0401610:three_prime_UTR 40.0%
CTTGTCTTAGACAGGTACAA+AGG + chr3_2:28083849-28083868 Msa0401610:intron 40.0%
! AAACACGTTTCCACCGATTA+AGG - chr3_2:28084338-28084357 None:intergenic 40.0%
! CTCCAAGTGGTGTTAATTGT+AGG + chr3_2:28084390-28084409 Msa0401610:intron 40.0%
AAGCTGTCAAAAAACACCTC+AGG + chr3_2:28084450-28084469 Msa0401610:intron 40.0%
TGCAAGTGTCTACAAACACA+TGG + chr3_2:28084773-28084792 Msa0401610:three_prime_UTR 40.0%
GGTAATGAACTGCAAATCTC+TGG + chr3_2:28084848-28084867 Msa0401610:intron 40.0%
! TTTTCTTTTCCCCTGTACTC+TGG + chr3_2:28084948-28084967 Msa0401610:intron 40.0%
GCCTATTTACCTGCTTTAGT+TGG + chr3_2:28084975-28084994 Msa0401610:intron 40.0%
AGTATGCAACCAACTAAAGC+AGG - chr3_2:28084987-28085006 None:intergenic 40.0%
CTAGCCTGTGAGTTATTACA+CGG + chr3_2:28085382-28085401 Msa0401610:three_prime_UTR 40.0%
CAAGATCTTGTGACGAACGA+CGG - chr3_2:28081538-28081557 None:intergenic 45.0%
TGCTAACAACCACCTAGAGA+CGG - chr3_2:28081599-28081618 None:intergenic 45.0%
CTAGGTGGTTGTTAGCAATC+TGG + chr3_2:28081602-28081621 Msa0401610:CDS 45.0%
AAGAGTTCGACCACCAAAAC+AGG - chr3_2:28081681-28081700 None:intergenic 45.0%
! TTTTGTGGTGGCTGTATCGT+CGG + chr3_2:28081752-28081771 Msa0401610:CDS 45.0%
TGACGTGATATGGTATGCAG+AGG + chr3_2:28081794-28081813 Msa0401610:CDS 45.0%
! TCGGACTCATTGATTGCATC+AGG + chr3_2:28081850-28081869 Msa0401610:three_prime_UTR 45.0%
CCACTTCGAAACAGGGATAA+CGG - chr3_2:28081920-28081939 None:intergenic 45.0%
CGTTATCCCTGTTTCGAAGT+GGG + chr3_2:28081918-28081937 Msa0401610:intron 45.0%
TAAAGACAACGTCCAGTAGC+AGG - chr3_2:28081962-28081981 None:intergenic 45.0%
! CTGGACGTTGTCTTTAGTTC+TGG + chr3_2:28081966-28081985 Msa0401610:intron 45.0%
!! GGACGTTGTCTTTAGTTCTG+GGG + chr3_2:28081968-28081987 Msa0401610:intron 45.0%
GAATGTAAACCCTTGGCAAC+AGG - chr3_2:28082110-28082129 None:intergenic 45.0%
TGTTTGTTTCCCTCCATAGC+AGG + chr3_2:28082143-28082162 Msa0401610:intron 45.0%
TTGTAAATGGCCAGGGAACA+TGG + chr3_2:28082450-28082469 Msa0401610:three_prime_UTR 45.0%
AGTAAGCATACCATGTTCCC+TGG - chr3_2:28082495-28082514 None:intergenic 45.0%
! TTTTGTGGTGGCTGTATCGT+TGG + chr3_2:28081752-28081771 Msa0401610:CDS 45.0%
GTACTGGGTTCGTTATGGTT+TGG + chr3_2:28082561-28082580 Msa0401610:three_prime_UTR 45.0%
GAGACTGAACAAAACACCAC+CGG - chr3_2:28082590-28082609 None:intergenic 45.0%
!! GGTGGTGTTTTGTTCAGTCT+CGG + chr3_2:28082589-28082608 Msa0401610:three_prime_UTR 45.0%
TCAAAGATCCCTTTGCTTCC+TGG - chr3_2:28082839-28082858 None:intergenic 45.0%
AATGTGGGATCCTTCTCTTG+AGG + chr3_2:28083205-28083224 Msa0401610:three_prime_UTR 45.0%
ATGTGGGATCCTTCTCTTGA+GGG + chr3_2:28083206-28083225 Msa0401610:three_prime_UTR 45.0%
! ATTTTGCTCCGTGGTTCATC+AGG + chr3_2:28083342-28083361 Msa0401610:three_prime_UTR 45.0%
AGTAGAAGCCTGATGAACCA+CGG - chr3_2:28083353-28083372 None:intergenic 45.0%
TTTATGAGCACTTACCCGGA+TGG + chr3_2:28083382-28083401 Msa0401610:three_prime_UTR 45.0%
CAAAGTGGGTCATAACCAGT+TGG - chr3_2:28083599-28083618 None:intergenic 45.0%
CAACTGGTTATGACCCACTT+TGG + chr3_2:28083597-28083616 Msa0401610:three_prime_UTR 45.0%
GTTATGACCCACTTTGGCTA+TGG + chr3_2:28083603-28083622 Msa0401610:three_prime_UTR 45.0%
CAAAAAACACCTCAGGAGAG+AGG + chr3_2:28084457-28084476 Msa0401610:intron 45.0%
ATACTTAGTCCTCTCTCCTG+AGG - chr3_2:28084469-28084488 None:intergenic 45.0%
ATAGGCTTTGCCAGAGTACA+GGG - chr3_2:28084961-28084980 None:intergenic 45.0%
AATAGGCTTTGCCAGAGTAC+AGG - chr3_2:28084962-28084981 None:intergenic 45.0%
TTCCCACCTATTGTTTGGGA+TGG + chr3_2:28085083-28085102 Msa0401610:intron 45.0%
CACCATCCCAAACAATAGGT+GGG - chr3_2:28085088-28085107 None:intergenic 45.0%
ACTGCACCATCCCAAACAAT+AGG - chr3_2:28085092-28085111 None:intergenic 45.0%
GTAATAACTCACAGGCTAGG+TGG - chr3_2:28085381-28085400 None:intergenic 45.0%
CGTGTAATAACTCACAGGCT+AGG - chr3_2:28085384-28085403 None:intergenic 45.0%
CTTGCCGTGTAATAACTCAC+AGG - chr3_2:28085389-28085408 None:intergenic 45.0%
CTGTGAGTTATTACACGGCA+AGG + chr3_2:28085387-28085406 Msa0401610:three_prime_UTR 45.0%
CGATGACGAGATCTGTACGA+CGG - chr3_2:28081572-28081591 None:intergenic 50.0%
! AGGTTTTCTTCGCCGGAGTT+TGG + chr3_2:28081633-28081652 Msa0401610:CDS 50.0%
! GGTTTTCTTCGCCGGAGTTT+GGG + chr3_2:28081634-28081653 Msa0401610:CDS 50.0%
! GTTTTCTTCGCCGGAGTTTG+GGG + chr3_2:28081635-28081654 Msa0401610:CDS 50.0%
AGTTCGACCACCAAAACAGG+AGG - chr3_2:28081678-28081697 None:intergenic 50.0%
ACTGGGTTCGTGACGTGATA+TGG + chr3_2:28081784-28081803 Msa0401610:CDS 50.0%
ATGGTATGCAGAGGCGAGAA+AGG + chr3_2:28081803-28081822 Msa0401610:CDS 50.0%
CCGTTATCCCTGTTTCGAAG+TGG + chr3_2:28081917-28081936 Msa0401610:intron 50.0%
TCCCTGTTTCGAAGTGGGAT+TGG + chr3_2:28081923-28081942 Msa0401610:intron 50.0%
GCCAATCCCACTTCGAAACA+GGG - chr3_2:28081927-28081946 None:intergenic 50.0%
TCCAGTAGCAGGCATAAAGC+AGG - chr3_2:28081951-28081970 None:intergenic 50.0%
TAGATGCATCCCTGTTGCCA+AGG + chr3_2:28082097-28082116 Msa0401610:intron 50.0%
AGATGCATCCCTGTTGCCAA+GGG + chr3_2:28082098-28082117 Msa0401610:intron 50.0%
CGGATTGATCTTGACATGGC+TGG + chr3_2:28082296-28082315 Msa0401610:three_prime_UTR 50.0%
!! CGTTATGGTTTGGTTTCCGG+TGG + chr3_2:28082571-28082590 Msa0401610:three_prime_UTR 50.0%
!! GGTGTTTTGTTCAGTCTCGG+TGG + chr3_2:28082592-28082611 Msa0401610:three_prime_UTR 50.0%
! GATCTTGTTTGGAGTGCACC+AGG + chr3_2:28082818-28082837 Msa0401610:three_prime_UTR 50.0%
CATCCTCCCATAGCCAAAGT+GGG - chr3_2:28083613-28083632 None:intergenic 50.0%
ATCAACGGGGCAACGTTAGT+GGG + chr3_2:28083820-28083839 Msa0401610:three_prime_UTR 50.0%
GGAGTTTGTGCCTTAATCGG+TGG + chr3_2:28084325-28084344 Msa0401610:intron 50.0%
TAGGCTTTGCCAGAGTACAG+GGG - chr3_2:28084960-28084979 None:intergenic 50.0%
GCACCATCCCAAACAATAGG+TGG - chr3_2:28085089-28085108 None:intergenic 50.0%
!! TGATTCCAGAGGTGTTGCAG+AGG + chr3_2:28085298-28085317 Msa0401610:three_prime_UTR 50.0%
TGCGTCTCTGATAAGTGCAC+AGG + chr3_2:28085338-28085357 Msa0401610:three_prime_UTR 50.0%
GCGTCTCTGATAAGTGCACA+GGG + chr3_2:28085339-28085358 Msa0401610:three_prime_UTR 50.0%
TCGACCACCAAAACAGGAGG+TGG - chr3_2:28081675-28081694 None:intergenic 55.0%
GGCGAGAAAGGAATCCCTGA+TGG + chr3_2:28081815-28081834 Msa0401610:CDS 55.0%
CGCCAATCCCACTTCGAAAC+AGG - chr3_2:28081928-28081947 None:intergenic 55.0%
GCCTGCTTTATGCCTGCTAC+TGG + chr3_2:28081947-28081966 Msa0401610:intron 55.0%
TGGAGTGCACCAGGAAGCAA+AGG + chr3_2:28082827-28082846 Msa0401610:three_prime_UTR 55.0%
GGAGTGCACCAGGAAGCAAA+GGG + chr3_2:28082828-28082847 Msa0401610:three_prime_UTR 55.0%
TGACCCACTTTGGCTATGGG+AGG + chr3_2:28083607-28083626 Msa0401610:three_prime_UTR 55.0%
GCATCCTCCCATAGCCAAAG+TGG - chr3_2:28083614-28083633 None:intergenic 55.0%
CTAACGTTGCCCCGTTGATC+CGG - chr3_2:28083819-28083838 None:intergenic 55.0%
GATCAACGGGGCAACGTTAG+TGG + chr3_2:28083819-28083838 Msa0401610:three_prime_UTR 55.0%
GTAGACACTTGCAGAGCCTC+TGG - chr3_2:28084766-28084785 None:intergenic 55.0%
TAGTGCCTCTGCAACACCTC+TGG - chr3_2:28085306-28085325 None:intergenic 55.0%
AAGGAAGGAGGAAGCGACGG+TGG - chr3_2:28081471-28081490 None:intergenic 60.0%
CCGAAGGAAGGAGGAAGCGA+CGG - chr3_2:28081474-28081493 None:intergenic 60.0%
CCGTCGCTTCCTCCTTCCTT+CGG + chr3_2:28081471-28081490 Msa0401610:CDS 60.0%
CAAACAGGGACGCCGAAGGA+AGG - chr3_2:28081486-28081505 None:intergenic 60.0%
CTTCCTTCGGCGTCCCTGTT+TGG + chr3_2:28081484-28081503 Msa0401610:intron 60.0%
AGACCAAACAGGGACGCCGA+AGG - chr3_2:28081490-28081509 None:intergenic 60.0%
CGTCATCGTTCGCCGTCTCT+AGG + chr3_2:28081584-28081603 Msa0401610:CDS 60.0%
CATCGTTCGCCGTCTCTAGG+TGG + chr3_2:28081587-28081606 Msa0401610:CDS 60.0%
! GTTCGCGCCACCTCCTGTTT+TGG + chr3_2:28081665-28081684 Msa0401610:intron 60.0%
! AATCCCTGATGGCGTGACGC+TGG + chr3_2:28081826-28081845 Msa0401610:exon 60.0%
GAACCAGCGTCACGCCATCA+GGG - chr3_2:28081832-28081851 None:intergenic 60.0%
! CTGATGGCGTGACGCTGGTT+CGG + chr3_2:28081831-28081850 Msa0401610:exon 60.0%
AGGAGGAAGCGACGGTGGTG+CGG - chr3_2:28081466-28081485 None:intergenic 65.0%
ACAGGGACGCCGAAGGAAGG+AGG - chr3_2:28081483-28081502 None:intergenic 65.0%
!! CGCGCCACCTCCTGTTTTGG+TGG + chr3_2:28081668-28081687 Msa0401610:intron 65.0%
CGAACCAGCGTCACGCCATC+AGG - chr3_2:28081833-28081852 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 28081438 28085705 28081438 ID=Msa0401610;Name=Msa0401610
chr3_2 mRNA 28081438 28085705 28081438 ID=Msa0401610-mRNA-1;Parent=Msa0401610;Name=Msa0401610-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.81|0.83|1|0.27|0.41|12|1990|80
chr3_2 exon 28081438 28081500 28081438 ID=Msa0401610-mRNA-1:exon:5741;Parent=Msa0401610-mRNA-1
chr3_2 exon 28081580 28081656 28081580 ID=Msa0401610-mRNA-1:exon:5742;Parent=Msa0401610-mRNA-1
chr3_2 exon 28081740 28081871 28081740 ID=Msa0401610-mRNA-1:exon:5743;Parent=Msa0401610-mRNA-1
chr3_2 exon 28082162 28082357 28082162 ID=Msa0401610-mRNA-1:exon:5744;Parent=Msa0401610-mRNA-1
chr3_2 exon 28082378 28082700 28082378 ID=Msa0401610-mRNA-1:exon:5745;Parent=Msa0401610-mRNA-1
chr3_2 exon 28082811 28083258 28082811 ID=Msa0401610-mRNA-1:exon:5746;Parent=Msa0401610-mRNA-1
chr3_2 exon 28083338 28083454 28083338 ID=Msa0401610-mRNA-1:exon:5747;Parent=Msa0401610-mRNA-1
chr3_2 exon 28083540 28083643 28083540 ID=Msa0401610-mRNA-1:exon:5748;Parent=Msa0401610-mRNA-1
chr3_2 exon 28083756 28083862 28083756 ID=Msa0401610-mRNA-1:exon:5749;Parent=Msa0401610-mRNA-1
chr3_2 exon 28083944 28084101 28083944 ID=Msa0401610-mRNA-1:exon:5750;Parent=Msa0401610-mRNA-1
chr3_2 exon 28084767 28084848 28084767 ID=Msa0401610-mRNA-1:exon:5751;Parent=Msa0401610-mRNA-1
chr3_2 exon 28085280 28085705 28085280 ID=Msa0401610-mRNA-1:exon:5752;Parent=Msa0401610-mRNA-1
chr3_2 CDS 28081438 28081500 28081438 ID=Msa0401610-mRNA-1:cds;Parent=Msa0401610-mRNA-1
chr3_2 CDS 28081580 28081656 28081580 ID=Msa0401610-mRNA-1:cds;Parent=Msa0401610-mRNA-1
chr3_2 CDS 28081740 28081842 28081740 ID=Msa0401610-mRNA-1:cds;Parent=Msa0401610-mRNA-1
chr3_2 three_prime_UTR 28081843 28081871 28081843 ID=Msa0401610-mRNA-1:three_prime_utr;Parent=Msa0401610-mRNA-1
chr3_2 three_prime_UTR 28082162 28082357 28082162 ID=Msa0401610-mRNA-1:three_prime_utr;Parent=Msa0401610-mRNA-1
chr3_2 three_prime_UTR 28082378 28082700 28082378 ID=Msa0401610-mRNA-1:three_prime_utr;Parent=Msa0401610-mRNA-1
chr3_2 three_prime_UTR 28082811 28083258 28082811 ID=Msa0401610-mRNA-1:three_prime_utr;Parent=Msa0401610-mRNA-1
chr3_2 three_prime_UTR 28083338 28083454 28083338 ID=Msa0401610-mRNA-1:three_prime_utr;Parent=Msa0401610-mRNA-1
chr3_2 three_prime_UTR 28083540 28083643 28083540 ID=Msa0401610-mRNA-1:three_prime_utr;Parent=Msa0401610-mRNA-1
chr3_2 three_prime_UTR 28083756 28083862 28083756 ID=Msa0401610-mRNA-1:three_prime_utr;Parent=Msa0401610-mRNA-1
chr3_2 three_prime_UTR 28083944 28084101 28083944 ID=Msa0401610-mRNA-1:three_prime_utr;Parent=Msa0401610-mRNA-1
chr3_2 three_prime_UTR 28084767 28084848 28084767 ID=Msa0401610-mRNA-1:three_prime_utr;Parent=Msa0401610-mRNA-1
chr3_2 three_prime_UTR 28085280 28085705 28085280 ID=Msa0401610-mRNA-1:three_prime_utr;Parent=Msa0401610-mRNA-1
Gene Sequence

>Msa0401610

ATGGTGGTGCGACGAGAGTTGTTCTCCGCACCACCGTCGCTTCCTCCTTCCTTCGGCGTCCCTATCTCGTCATCGTTCGCCGTCTCTAGGTGGTTGTTAGCAATCTGGTTTTCTTCAGGTTTTCTTCGCCGGAGTTTGGGTTTCGTTTTTGCTTTTGTGGTGGCTGTATCGTCGGTTGTTTTGTACTGGGTTCGTGACGTGATATGGTATGCAGAGGCGAGAAAGGAATCCCTGATGGCGTGA
Protein sequence

>Msa0401610

MVVRRELFSAPPSLPPSFGVPISSSFAVSRWLLAIWFSSGFLRRSLGFVFAFVVAVSSVVLYWVRDVIWYAEARKESLMA*