AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0327690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0327690 MtrunA17_Chr2g0309181 95.683 556 24 0 1 556 31 586 0.0 1103
Msa0327690 MtrunA17_Chr2g0309171 76.701 588 100 3 6 556 565 1152 0.0 902
Msa0327690 MtrunA17_Chr2g0309171 81.081 518 93 2 39 552 14 530 0.0 877
Msa0327690 MtrunA17_Chr2g0309191 77.555 548 116 2 9 556 13 553 0.0 895
Msa0327690 MtrunA17_Chr4g0074491 75.641 546 127 2 17 556 2 547 0.0 844
Msa0327690 MtrunA17_Chr2g0310081 57.636 550 205 8 17 556 48 579 0.0 631
Msa0327690 MtrunA17_Chr2g0309131 49.636 550 192 10 17 555 10 485 7.47e-175 503
Msa0327690 MtrunA17_Chr1g0190341 44.203 552 281 10 20 555 18 558 5.33e-163 475
Msa0327690 MtrunA17_Chr1g0190371 44.203 552 281 10 20 555 18 558 5.33e-163 475
Msa0327690 MtrunA17_Chr5g0395701 43.134 568 291 10 13 555 45 605 8.98e-158 464
Msa0327690 MtrunA17_Chr4g0039581 43.885 556 283 12 20 555 21 567 2.13e-153 451
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0327690 AT2G44260.1 57.615 545 220 6 13 555 17 552 0.0 650
Msa0327690 AT2G44260.2 58.767 519 205 5 39 555 71 582 0.0 636
Msa0327690 AT2G44230.1 54.529 541 231 6 20 556 13 542 0.0 605
Msa0327690 AT3G01870.1 49.177 547 257 8 18 555 49 583 0.0 530
Msa0327690 AT3G01880.1 48.014 554 269 8 11 555 46 589 1.05e-176 512
Msa0327690 AT5G18490.1 45.018 542 272 9 27 556 25 552 1.06e-161 472
Msa0327690 AT3G04350.1 42.441 549 289 9 27 556 26 566 6.41e-153 450
Msa0327690 AT5G43950.1 42.857 546 292 9 26 555 23 564 5.43e-150 442
Msa0327690 AT3G04350.2 42.272 537 283 9 39 556 16 544 2.21e-148 438
Msa0327690 AT1G04090.1 41.982 555 290 13 26 555 23 570 1.13e-145 432

Find 141 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATTCCACTCTGTTTATT+TGG 0.160989 2_4:-39604290 Msa0327690:CDS
GCTCTCCCAGGTCCATTAAA+AGG 0.194798 2_4:+39603631 None:intergenic
CTTAGTGGTGCGATTGTATT+AGG 0.212578 2_4:-39603007 Msa0327690:three_prime_UTR
ACTTACCTTCCTCGGTTAAT+TGG 0.215430 2_4:-39603900 Msa0327690:CDS
TTTCCTAAATGGGTTGTTAA+AGG 0.227744 2_4:+39602830 None:intergenic
CATCAACTTTCAGCAAAGTT+TGG 0.230782 2_4:-39604539 Msa0327690:CDS
TTCCAATTGCACAAACTTCT+TGG 0.232459 2_4:-39604717 Msa0327690:CDS
GCCTCTCCCAATATTTCTTT+TGG 0.236134 2_4:+39603112 None:intergenic
GTCCAAAGCAAAAGAATAAT+TGG 0.237948 2_4:-39603078 Msa0327690:CDS
AGGAAAGAATGTTATGGATA+TGG 0.239424 2_4:-39603317 Msa0327690:CDS
GTGAGTCGTCTTCGTGGATT+TGG 0.245039 2_4:-39604155 Msa0327690:CDS
TGGTTTCTGCAGAGTATTTA+GGG 0.261413 2_4:-39603282 Msa0327690:CDS
GGACTTACCAAAAGAAATAT+TGG 0.269685 2_4:-39603119 Msa0327690:CDS
GAGTTCATAAATGTGAAATT+AGG 0.273788 2_4:-39603601 Msa0327690:CDS
GACATTAAGGGTGAGTAATT+TGG 0.283450 2_4:-39603542 Msa0327690:CDS
GGCCCTTTAACAACCCATTT+AGG 0.293956 2_4:-39602833 Msa0327690:three_prime_UTR
TTGGTTTCTGCAGAGTATTT+AGG 0.294953 2_4:-39603283 Msa0327690:CDS
ATCAACTTTCAGCAAAGTTT+GGG 0.304915 2_4:-39604538 Msa0327690:CDS
TAATTATATCTCCAAGTTCT+TGG 0.312271 2_4:-39602936 Msa0327690:three_prime_UTR
GAACTTGGAGATATAATTAC+TGG 0.318755 2_4:+39602940 None:intergenic
CATGCTGGTCTTGTTCTACT+AGG 0.320189 2_4:-39603376 Msa0327690:CDS
GTAATTTGGATGGTCAATTA+TGG 0.322988 2_4:-39603528 Msa0327690:CDS
ATTGGGAGCATGTGACATTA+AGG 0.331662 2_4:-39603555 Msa0327690:CDS
CACAACATAATCTTGGTTCA+TGG 0.334689 2_4:-39603492 Msa0327690:CDS
TGAGTCGTCTTCGTGGATTT+GGG 0.342143 2_4:-39604154 Msa0327690:CDS
CATACAGGTAACGGGTTTGC+AGG 0.352196 2_4:-39604600 Msa0327690:intron
GGCCAAGAAGTTTGTGCAAT+TGG 0.364646 2_4:+39604715 None:intergenic
TTGTATCCATTAGGTGCTAT+TGG 0.368272 2_4:+39604264 None:intergenic
GGTACCTTCGTTGCACAAAA+TGG 0.369818 2_4:-39604060 Msa0327690:CDS
AATGTGAAATTAGGGAAAAT+AGG 0.372168 2_4:-39603592 Msa0327690:CDS
ACAGAGGCGCCTTGATTGTC+CGG 0.375593 2_4:+39604498 None:intergenic
TTAGTTATATTGATTCTTAG+TGG 0.378442 2_4:-39603022 Msa0327690:three_prime_UTR
TTCCTAAATGGGTTGTTAAA+GGG 0.381160 2_4:+39602831 None:intergenic
GCAATAGATGATACTAATAA+AGG 0.384429 2_4:-39603337 Msa0327690:CDS
GTCGAACACCGCATTCTTCA+AGG 0.387707 2_4:-39604319 Msa0327690:CDS
TTAGTGGTGCGATTGTATTA+GGG 0.388437 2_4:-39603006 Msa0327690:three_prime_UTR
TATTTCTCACAACATAATCT+TGG 0.390267 2_4:-39603499 Msa0327690:CDS
AGTTCATAAATGTGAAATTA+GGG 0.391337 2_4:-39603600 Msa0327690:CDS
CCTAACATAGAGAATCCTTT+AGG 0.394355 2_4:+39604456 None:intergenic
GCTTGAGTTCCTCTATTGAT+TGG 0.400227 2_4:+39604099 None:intergenic
TCAGAATGTAAGTATAGAAA+TGG 0.405414 2_4:+39603931 None:intergenic
CCTAAAGCTTTGTATCCATT+AGG 0.407577 2_4:+39604255 None:intergenic
CCTAATGGATACAAAGCTTT+AGG 0.409137 2_4:-39604255 Msa0327690:CDS
CAATAGGAACCATCGGTGTT+AGG 0.411858 2_4:+39603787 None:intergenic
CCTGTTCCAATAGCACAAAA+TGG 0.413050 2_4:-39603829 Msa0327690:CDS
CCTAAAGGATTCTCTATGTT+AGG 0.416282 2_4:-39604456 Msa0327690:CDS
CTAACACCGATGGTTCCTAT+TGG 0.417136 2_4:-39603786 Msa0327690:CDS
TTCTTCAAACATGAAATTGA+TGG 0.419362 2_4:+39604021 None:intergenic
TGGTTACCAATAGCACCTAA+TGG 0.422345 2_4:-39604270 Msa0327690:CDS
TTGGGAGAGGCAGGACCAAC+AGG 0.427472 2_4:-39603100 Msa0327690:CDS
CTTGTATAGTAATGCTCCAT+TGG 0.433338 2_4:+39603870 None:intergenic
GGAAAGAATGTTATGGATAT+GGG 0.435541 2_4:-39603316 Msa0327690:CDS
GGATATGGGAAAATTTGTAT+TGG 0.435630 2_4:-39603302 Msa0327690:CDS
GCACAAACTTCTTGGCCAAA+AGG 0.441933 2_4:-39604709 Msa0327690:intron
AAGTTTGAATGCGTAGTCAA+TGG 0.453149 2_4:+39604738 None:intergenic
TAATAAAGGAAAGAATGTTA+TGG 0.453406 2_4:-39603323 Msa0327690:CDS
AATGTTGAGAAGTTATTGCC+TGG 0.454803 2_4:-39603175 Msa0327690:CDS
CATCAAATGACCTTAGCCTT+TGG 0.456955 2_4:-39602854 Msa0327690:three_prime_UTR
CTTGAGTTCCAAGATGGAAT+AGG 0.458285 2_4:-39603454 Msa0327690:CDS
GACACAAGTGTGTAATCAAC+TGG 0.459550 2_4:+39604339 None:intergenic
TTGTTGCACCTATTCCATCT+TGG 0.460066 2_4:+39603446 None:intergenic
GACTTACCAAAAGAAATATT+GGG 0.462376 2_4:-39603118 Msa0327690:CDS
ACCAATGTGAGTCGTCTTCG+TGG 0.467378 2_4:-39604161 Msa0327690:CDS
TCTTTGTTTGCATTATCAGC+AGG 0.468164 2_4:+39603754 None:intergenic
AGTTTGAATGCGTAGTCAAT+GGG 0.469727 2_4:+39604739 None:intergenic
CTCTCCCAGGTCCATTAAAA+GGG 0.473051 2_4:+39603632 None:intergenic
TAGGTGAACATGTTGGTGAT+TGG 0.478019 2_4:-39603573 Msa0327690:CDS
GCCTCTGTGTACGAACCAAC+AGG 0.479134 2_4:-39604483 Msa0327690:CDS
AAAGAGGCTTATTGTTTGGT+TGG 0.482475 2_4:+39604424 None:intergenic
GAGCATTACTATACAAGAAA+GGG 0.482576 2_4:-39603864 Msa0327690:CDS
GGAGCATTACTATACAAGAA+AGG 0.483944 2_4:-39603865 Msa0327690:CDS
GCAGGCGGATTCCTCGATCT+AGG 0.486584 2_4:-39604582 Msa0327690:CDS
TGCAATGAAGCATATACAAC+AGG 0.488736 2_4:+39603418 None:intergenic
AATTGCGACATACAGGTAAC+GGG 0.497902 2_4:-39604608 Msa0327690:intron
ATGGGGCGAGAGCGGGATCT+AGG 0.501692 2_4:+39604757 None:intergenic
TCTCAACTTGAGTTCCAAGA+TGG 0.510263 2_4:-39603460 Msa0327690:CDS
AGGTGAACATGTTGGTGATT+GGG 0.511142 2_4:-39603572 Msa0327690:CDS
ATAGAAATGGAGAGTAAACT+TGG 0.512111 2_4:+39603944 None:intergenic
AGCAGGTAGGTCAAGCCAAT+AGG 0.513437 2_4:+39603771 None:intergenic
GGGCGCGTACGAGGGTGGCC+CGG 0.513611 2_4:-39604517 Msa0327690:CDS
GTAGTCAATGGGGCGAGAGC+GGG 0.524182 2_4:+39604750 None:intergenic
GAGGGTGGCCCGGACAATCA+AGG 0.531572 2_4:-39604507 Msa0327690:CDS
CAAAGTTTGGGGCGCGTACG+AGG 0.533368 2_4:-39604526 Msa0327690:CDS
AAAGAAATATTGGGAGAGGC+AGG 0.533409 2_4:-39603109 Msa0327690:CDS
GTTGTATATGCTTCATTGCA+TGG 0.535907 2_4:-39603415 Msa0327690:CDS
TTCAAACATGAAATTGATGG+AGG 0.536359 2_4:+39604024 None:intergenic
GTGAATGTTCCTCCATACAT+TGG 0.538131 2_4:+39603679 None:intergenic
TGAAGAATACTTACCTTCCT+CGG 0.539422 2_4:-39603908 Msa0327690:CDS
AAATGGAACTAACCTTCCTC+AGG 0.545452 2_4:-39603812 Msa0327690:CDS
AATAGAGGAACTCAAGCTCC+TGG 0.546176 2_4:-39604093 Msa0327690:CDS
GTACATGTGAAACCAATGTA+TGG 0.546199 2_4:-39603691 Msa0327690:CDS
CATGCATCATATTCACATGC+TGG 0.552046 2_4:-39603391 Msa0327690:CDS
GTTTGGGGCGCGTACGAGGG+TGG 0.552139 2_4:-39604522 Msa0327690:CDS
TGTTAAAGGGCCAAAGGCTA+AGG 0.556702 2_4:+39602844 None:intergenic
GATGTTTCTTCAAGTACCAC+AGG 0.559865 2_4:-39604378 Msa0327690:CDS
CGTAGTCAATGGGGCGAGAG+CGG 0.561272 2_4:+39604749 None:intergenic
CTTGTGTTGTGGTGACAACA+TGG 0.561956 2_4:+39604232 None:intergenic
ACCAAAAGAAATATTGGGAG+AGG 0.562402 2_4:-39603113 Msa0327690:CDS
ATGCTGGTCTTGTTCTACTA+GGG 0.566142 2_4:-39603375 Msa0327690:CDS
ATGTTGAGAAGTTATTGCCT+GGG 0.567615 2_4:-39603174 Msa0327690:CDS
CAGAGGCGCCTTGATTGTCC+GGG 0.570660 2_4:+39604499 None:intergenic
AACAAAGAGAGAGTCAAGAA+AGG 0.571578 2_4:-39603739 Msa0327690:CDS
TAGTGGTGCGATTGTATTAG+GGG 0.579700 2_4:-39603005 Msa0327690:three_prime_UTR
GTCAAGCCAATAGGAACCAT+CGG 0.580701 2_4:+39603780 None:intergenic
TAGGCAATGGGGTCCACATG+TGG 0.584937 2_4:-39603224 Msa0327690:CDS
ACCTTCGTTGCACAAAATGG+TGG 0.586771 2_4:-39604057 Msa0327690:CDS
TCAAACATGAAATTGATGGA+GGG 0.588797 2_4:+39604025 None:intergenic
CATTCACTGATATTGCTATG+TGG 0.588887 2_4:-39603663 Msa0327690:CDS
GGCGGATTCCTCGATCTAGG+TGG 0.589492 2_4:-39604579 Msa0327690:CDS
AATCCTTTAGGTATTCCTGT+TGG 0.590174 2_4:+39604468 None:intergenic
GAACCAACAGGAATACCTAA+AGG 0.591524 2_4:-39604471 Msa0327690:CDS
CTGAAGTTAAAGAGCCAGCA+TGG 0.591737 2_4:-39603258 Msa0327690:CDS
AAGGTACCGACTCGAACACC+AGG 0.592465 2_4:+39604075 None:intergenic
CGGTGTTAGGATCCTGAGGA+AGG 0.595347 2_4:+39603800 None:intergenic
GGGAAAATAGGTGAACATGT+TGG 0.598707 2_4:-39603580 Msa0327690:CDS
TGTTTGCATTATCAGCAGGT+AGG 0.599393 2_4:+39603758 None:intergenic
TCCACGAAGACGACTCACAT+TGG 0.601235 2_4:+39604160 None:intergenic
GCGGATTCCTCGATCTAGGT+GGG 0.601507 2_4:-39604578 Msa0327690:CDS
AAAGTTTGGGGCGCGTACGA+GGG 0.602237 2_4:-39604525 Msa0327690:CDS
GATGTTAGACCAATCAATAG+AGG 0.612200 2_4:-39604108 Msa0327690:CDS
ATGGGTTGTTAAAGGGCCAA+AGG 0.616992 2_4:+39602838 None:intergenic
GAGTCGTCTTCGTGGATTTG+GGG 0.618172 2_4:-39604153 Msa0327690:CDS
TTGGGAGCATGTGACATTAA+GGG 0.618313 2_4:-39603554 Msa0327690:CDS
TCAACTTTCAGCAAAGTTTG+GGG 0.622783 2_4:-39604537 Msa0327690:CDS
CCTTCGTTGCACAAAATGGT+GGG 0.623036 2_4:-39604056 Msa0327690:CDS
CCTCAGGATCCTAACACCGA+TGG 0.625114 2_4:-39603796 Msa0327690:CDS
CAAGCTCCTGGTGTTCGAGT+CGG 0.632690 2_4:-39604081 Msa0327690:CDS
GGAAGGTTTATCTTGTGTTG+TGG 0.635479 2_4:+39604221 None:intergenic
CCATCGGTGTTAGGATCCTG+AGG 0.638972 2_4:+39603796 None:intergenic
AAGCAAAAGAATAATTGGAG+TGG 0.643244 2_4:-39603073 Msa0327690:CDS
ACAGGTAACGGGTTTGCAGG+CGG 0.645435 2_4:-39604597 Msa0327690:intron
TTAAGGGTGAGTAATTTGGA+TGG 0.647264 2_4:-39603538 Msa0327690:CDS
TCCTGTTGGTTCGTACACAG+AGG 0.657319 2_4:+39604482 None:intergenic
TCTAGACTATAGTCCACATG+TGG 0.667547 2_4:+39603211 None:intergenic
CTTGCAGCCCACCTAGATCG+AGG 0.671094 2_4:+39604571 None:intergenic
TGGTAACCAAATAAACAGAG+TGG 0.676944 2_4:+39604284 None:intergenic
ACGACTCACATTGGTCTGTG+AGG 0.680953 2_4:+39604169 None:intergenic
GTTTGAATGCGTAGTCAATG+GGG 0.693078 2_4:+39604740 None:intergenic
TTGAGTAGCCTTGAAGAATG+CGG 0.694669 2_4:+39604311 None:intergenic
ACAAGTGTGTAATCAACTGG+TGG 0.706125 2_4:+39604342 None:intergenic
CATGTGAAACCAATGTATGG+AGG 0.726903 2_4:-39603688 Msa0327690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTCATAAATGTGAAATTA+GGG - chr2_4:39603981-39604000 Msa0327690:CDS 20.0%
!! TAATAAAGGAAAGAATGTTA+TGG - chr2_4:39604258-39604277 Msa0327690:CDS 20.0%
!!! TTAGTTATATTGATTCTTAG+TGG - chr2_4:39604559-39604578 Msa0327690:CDS 20.0%
!! AGTTCATAAATGTGAAATTA+GGG - chr2_4:39603981-39604000 Msa0327690:CDS 20.0%
!! TAATAAAGGAAAGAATGTTA+TGG - chr2_4:39604258-39604277 Msa0327690:CDS 20.0%
!!! TTAGTTATATTGATTCTTAG+TGG - chr2_4:39604559-39604578 Msa0327690:CDS 20.0%
! AGAAAATGAGAATCACATAA+TGG + chr2_4:39602901-39602920 None:intergenic 25.0%
! ACAAAAACATATCCAAAAAG+AGG + chr2_4:39603176-39603195 None:intergenic 25.0%
! TTCTTCAAACATGAAATTGA+TGG + chr2_4:39603563-39603582 None:intergenic 25.0%
! TCAGAATGTAAGTATAGAAA+TGG + chr2_4:39603653-39603672 None:intergenic 25.0%
! GAGTTCATAAATGTGAAATT+AGG - chr2_4:39603980-39603999 Msa0327690:CDS 25.0%
! AATGTGAAATTAGGGAAAAT+AGG - chr2_4:39603989-39604008 Msa0327690:CDS 25.0%
! TATTTCTCACAACATAATCT+TGG - chr2_4:39604082-39604101 Msa0327690:CDS 25.0%
! GCAATAGATGATACTAATAA+AGG - chr2_4:39604244-39604263 Msa0327690:CDS 25.0%
!!! GTTGAATTTTTTTAGGCAAT+GGG - chr2_4:39604345-39604364 Msa0327690:CDS 25.0%
!!! TTGAATTTTTTTAGGCAATG+GGG - chr2_4:39604346-39604365 Msa0327690:CDS 25.0%
!!! ACGGTTTTGAAGATATTATT+AGG - chr2_4:39604440-39604459 Msa0327690:CDS 25.0%
!!! CGGTTTTGAAGATATTATTA+GGG - chr2_4:39604441-39604460 Msa0327690:CDS 25.0%
! GACTTACCAAAAGAAATATT+GGG - chr2_4:39604463-39604482 Msa0327690:CDS 25.0%
! TAATTATATCTCCAAGTTCT+TGG - chr2_4:39604645-39604664 Msa0327690:intron 25.0%
!! TTTCCATGTTTTTCCTAAAT+GGG + chr2_4:39604764-39604783 None:intergenic 25.0%
! AGAAAATGAGAATCACATAA+TGG + chr2_4:39602901-39602920 None:intergenic 25.0%
! ACAAAAACATATCCAAAAAG+AGG + chr2_4:39603176-39603195 None:intergenic 25.0%
! TTCTTCAAACATGAAATTGA+TGG + chr2_4:39603563-39603582 None:intergenic 25.0%
! TCAGAATGTAAGTATAGAAA+TGG + chr2_4:39603653-39603672 None:intergenic 25.0%
! GAGTTCATAAATGTGAAATT+AGG - chr2_4:39603980-39603999 Msa0327690:CDS 25.0%
! AATGTGAAATTAGGGAAAAT+AGG - chr2_4:39603989-39604008 Msa0327690:CDS 25.0%
! TATTTCTCACAACATAATCT+TGG - chr2_4:39604082-39604101 Msa0327690:CDS 25.0%
! GCAATAGATGATACTAATAA+AGG - chr2_4:39604244-39604263 Msa0327690:CDS 25.0%
!!! GTTGAATTTTTTTAGGCAAT+GGG - chr2_4:39604345-39604364 Msa0327690:CDS 25.0%
!!! TTGAATTTTTTTAGGCAATG+GGG - chr2_4:39604346-39604365 Msa0327690:CDS 25.0%
!!! ACGGTTTTGAAGATATTATT+AGG - chr2_4:39604440-39604459 Msa0327690:CDS 25.0%
!!! CGGTTTTGAAGATATTATTA+GGG - chr2_4:39604441-39604460 Msa0327690:CDS 25.0%
! GACTTACCAAAAGAAATATT+GGG - chr2_4:39604463-39604482 Msa0327690:CDS 25.0%
! TAATTATATCTCCAAGTTCT+TGG - chr2_4:39604645-39604664 Msa0327690:intron 25.0%
!! TTTCCATGTTTTTCCTAAAT+GGG + chr2_4:39604764-39604783 None:intergenic 25.0%
!!! ATCACATAATGGATACCTTT+TGG + chr2_4:39602890-39602909 None:intergenic 30.0%
TCACTACTAGAATGTATAAG+AGG + chr2_4:39602926-39602945 None:intergenic 30.0%
ATGCTAATTATACCAAGTGT+TGG - chr2_4:39602950-39602969 Msa0327690:three_prime_UTR 30.0%
ATCAACTTTCAGCAAAGTTT+GGG - chr2_4:39603043-39603062 Msa0327690:exon 30.0%
!! TGGATATGTTTTTGTAGCAA+AGG - chr2_4:39603181-39603200 Msa0327690:CDS 30.0%
AAGATTCCACTCTGTTTATT+TGG - chr2_4:39603291-39603310 Msa0327690:CDS 30.0%
! CACATGATTTTATCAAAGGA+AGG + chr2_4:39603380-39603399 None:intergenic 30.0%
! GACACACATGATTTTATCAA+AGG + chr2_4:39603384-39603403 None:intergenic 30.0%
TCAAACATGAAATTGATGGA+GGG + chr2_4:39603559-39603578 None:intergenic 30.0%
TTCAAACATGAAATTGATGG+AGG + chr2_4:39603560-39603579 None:intergenic 30.0%
GCCTAATAAAAAACAAATCG+AGG - chr2_4:39603607-39603626 Msa0327690:CDS 30.0%
!!! GCCTCGATTTGTTTTTTATT+AGG + chr2_4:39603611-39603630 None:intergenic 30.0%
ATAGAAATGGAGAGTAAACT+TGG + chr2_4:39603640-39603659 None:intergenic 30.0%
!!! GTTAATTGGTTTTTCTCCAA+TGG - chr2_4:39603695-39603714 Msa0327690:CDS 30.0%
GAGCATTACTATACAAGAAA+GGG - chr2_4:39603717-39603736 Msa0327690:CDS 30.0%
! TTAGTTCCATTTTGTGCTAT+TGG + chr2_4:39603761-39603780 None:intergenic 30.0%
! TGGATTTTCTACCCTTTTAA+TGG - chr2_4:39603938-39603957 Msa0327690:CDS 30.0%
GTAATTTGGATGGTCAATTA+TGG - chr2_4:39604053-39604072 Msa0327690:CDS 30.0%
AGGAAAGAATGTTATGGATA+TGG - chr2_4:39604264-39604283 Msa0327690:CDS 30.0%
GGAAAGAATGTTATGGATAT+GGG - chr2_4:39604265-39604284 Msa0327690:CDS 30.0%
GGATATGGGAAAATTTGTAT+TGG - chr2_4:39604279-39604298 Msa0327690:CDS 30.0%
CTAAAAAAATTCAACCATGC+TGG + chr2_4:39604340-39604359 None:intergenic 30.0%
!!! CAGCATGGTTGAATTTTTTT+AGG - chr2_4:39604338-39604357 Msa0327690:CDS 30.0%
!!! GGTTGAATTTTTTTAGGCAA+TGG - chr2_4:39604344-39604363 Msa0327690:CDS 30.0%
GGACTTACCAAAAGAAATAT+TGG - chr2_4:39604462-39604481 Msa0327690:CDS 30.0%
GTCCAAAGCAAAAGAATAAT+TGG - chr2_4:39604503-39604522 Msa0327690:CDS 30.0%
! CTCCAATTATTCTTTTGCTT+TGG + chr2_4:39604508-39604527 None:intergenic 30.0%
AAGCAAAAGAATAATTGGAG+TGG - chr2_4:39604508-39604527 Msa0327690:CDS 30.0%
GAACTTGGAGATATAATTAC+TGG + chr2_4:39604644-39604663 None:intergenic 30.0%
! TTTTATGTGTACCAAGAACT+TGG + chr2_4:39604659-39604678 None:intergenic 30.0%
!! TTCCTAAATGGGTTGTTAAA+GGG + chr2_4:39604753-39604772 None:intergenic 30.0%
!! TTTCCTAAATGGGTTGTTAA+AGG + chr2_4:39604754-39604773 None:intergenic 30.0%
! GTTTCCATGTTTTTCCTAAA+TGG + chr2_4:39604765-39604784 None:intergenic 30.0%
!!! ATCACATAATGGATACCTTT+TGG + chr2_4:39602890-39602909 None:intergenic 30.0%
TCACTACTAGAATGTATAAG+AGG + chr2_4:39602926-39602945 None:intergenic 30.0%
ATGCTAATTATACCAAGTGT+TGG - chr2_4:39602950-39602969 Msa0327690:three_prime_UTR 30.0%
ATCAACTTTCAGCAAAGTTT+GGG - chr2_4:39603043-39603062 Msa0327690:exon 30.0%
!! TGGATATGTTTTTGTAGCAA+AGG - chr2_4:39603181-39603200 Msa0327690:CDS 30.0%
AAGATTCCACTCTGTTTATT+TGG - chr2_4:39603291-39603310 Msa0327690:CDS 30.0%
! CACATGATTTTATCAAAGGA+AGG + chr2_4:39603380-39603399 None:intergenic 30.0%
! GACACACATGATTTTATCAA+AGG + chr2_4:39603384-39603403 None:intergenic 30.0%
TCAAACATGAAATTGATGGA+GGG + chr2_4:39603559-39603578 None:intergenic 30.0%
TTCAAACATGAAATTGATGG+AGG + chr2_4:39603560-39603579 None:intergenic 30.0%
GCCTAATAAAAAACAAATCG+AGG - chr2_4:39603607-39603626 Msa0327690:CDS 30.0%
!!! GCCTCGATTTGTTTTTTATT+AGG + chr2_4:39603611-39603630 None:intergenic 30.0%
ATAGAAATGGAGAGTAAACT+TGG + chr2_4:39603640-39603659 None:intergenic 30.0%
!!! GTTAATTGGTTTTTCTCCAA+TGG - chr2_4:39603695-39603714 Msa0327690:CDS 30.0%
GAGCATTACTATACAAGAAA+GGG - chr2_4:39603717-39603736 Msa0327690:CDS 30.0%
! TTAGTTCCATTTTGTGCTAT+TGG + chr2_4:39603761-39603780 None:intergenic 30.0%
! TGGATTTTCTACCCTTTTAA+TGG - chr2_4:39603938-39603957 Msa0327690:CDS 30.0%
GTAATTTGGATGGTCAATTA+TGG - chr2_4:39604053-39604072 Msa0327690:CDS 30.0%
AGGAAAGAATGTTATGGATA+TGG - chr2_4:39604264-39604283 Msa0327690:CDS 30.0%
GGAAAGAATGTTATGGATAT+GGG - chr2_4:39604265-39604284 Msa0327690:CDS 30.0%
GGATATGGGAAAATTTGTAT+TGG - chr2_4:39604279-39604298 Msa0327690:CDS 30.0%
CTAAAAAAATTCAACCATGC+TGG + chr2_4:39604340-39604359 None:intergenic 30.0%
!!! CAGCATGGTTGAATTTTTTT+AGG - chr2_4:39604338-39604357 Msa0327690:CDS 30.0%
!!! GGTTGAATTTTTTTAGGCAA+TGG - chr2_4:39604344-39604363 Msa0327690:CDS 30.0%
GGACTTACCAAAAGAAATAT+TGG - chr2_4:39604462-39604481 Msa0327690:CDS 30.0%
GTCCAAAGCAAAAGAATAAT+TGG - chr2_4:39604503-39604522 Msa0327690:CDS 30.0%
! CTCCAATTATTCTTTTGCTT+TGG + chr2_4:39604508-39604527 None:intergenic 30.0%
AAGCAAAAGAATAATTGGAG+TGG - chr2_4:39604508-39604527 Msa0327690:CDS 30.0%
GAACTTGGAGATATAATTAC+TGG + chr2_4:39604644-39604663 None:intergenic 30.0%
! TTTTATGTGTACCAAGAACT+TGG + chr2_4:39604659-39604678 None:intergenic 30.0%
!! TTCCTAAATGGGTTGTTAAA+GGG + chr2_4:39604753-39604772 None:intergenic 30.0%
!! TTTCCTAAATGGGTTGTTAA+AGG + chr2_4:39604754-39604773 None:intergenic 30.0%
! GTTTCCATGTTTTTCCTAAA+TGG + chr2_4:39604765-39604784 None:intergenic 30.0%
AGTTTGAATGCGTAGTCAAT+GGG + chr2_4:39602845-39602864 None:intergenic 35.0%
AAGTTTGAATGCGTAGTCAA+TGG + chr2_4:39602846-39602865 None:intergenic 35.0%
TTCCAATTGCACAAACTTCT+TGG - chr2_4:39602864-39602883 Msa0327690:three_prime_UTR 35.0%
CATCAACTTTCAGCAAAGTT+TGG - chr2_4:39603042-39603061 Msa0327690:exon 35.0%
TCAACTTTCAGCAAAGTTTG+GGG - chr2_4:39603044-39603063 Msa0327690:exon 35.0%
AATCCTTTAGGTATTCCTGT+TGG + chr2_4:39603116-39603135 None:intergenic 35.0%
CCTAACATAGAGAATCCTTT+AGG + chr2_4:39603128-39603147 None:intergenic 35.0%
CCTAAAGGATTCTCTATGTT+AGG - chr2_4:39603125-39603144 Msa0327690:CDS 35.0%
AAAGAGGCTTATTGTTTGGT+TGG + chr2_4:39603160-39603179 None:intergenic 35.0%
CCAAAAAGAGGCTTATTGTT+TGG + chr2_4:39603164-39603183 None:intergenic 35.0%
! CCAAACAATAAGCCTCTTTT+TGG - chr2_4:39603161-39603180 Msa0327690:CDS 35.0%
!!! TGGTTTTAAAGTTCTACCTG+TGG + chr2_4:39603222-39603241 None:intergenic 35.0%
TGGTAACCAAATAAACAGAG+TGG + chr2_4:39603300-39603319 None:intergenic 35.0%
! TTGTATCCATTAGGTGCTAT+TGG + chr2_4:39603320-39603339 None:intergenic 35.0%
! CCTAAAGCTTTGTATCCATT+AGG + chr2_4:39603329-39603348 None:intergenic 35.0%
! CCTAATGGATACAAAGCTTT+AGG - chr2_4:39603326-39603345 Msa0327690:CDS 35.0%
GATGTTAGACCAATCAATAG+AGG - chr2_4:39603473-39603492 Msa0327690:CDS 35.0%
TGAAGAATACTTACCTTCCT+CGG - chr2_4:39603673-39603692 Msa0327690:CDS 35.0%
AAAAACCAATTAACCGAGGA+AGG + chr2_4:39603689-39603708 None:intergenic 35.0%
CTTGTATAGTAATGCTCCAT+TGG + chr2_4:39603714-39603733 None:intergenic 35.0%
! GGAGCATTACTATACAAGAA+AGG - chr2_4:39603716-39603735 Msa0327690:CDS 35.0%
! TCTTTGTTTGCATTATCAGC+AGG + chr2_4:39603830-39603849 None:intergenic 35.0%
AACAAAGAGAGAGTCAAGAA+AGG - chr2_4:39603842-39603861 Msa0327690:CDS 35.0%
GTACATGTGAAACCAATGTA+TGG - chr2_4:39603890-39603909 Msa0327690:CDS 35.0%
CATTCACTGATATTGCTATG+TGG - chr2_4:39603918-39603937 Msa0327690:CDS 35.0%
GACATTAAGGGTGAGTAATT+TGG - chr2_4:39604039-39604058 Msa0327690:CDS 35.0%
TTAAGGGTGAGTAATTTGGA+TGG - chr2_4:39604043-39604062 Msa0327690:CDS 35.0%
CACAACATAATCTTGGTTCA+TGG - chr2_4:39604089-39604108 Msa0327690:CDS 35.0%
TGCAATGAAGCATATACAAC+AGG + chr2_4:39604166-39604185 None:intergenic 35.0%
GTTGTATATGCTTCATTGCA+TGG - chr2_4:39604166-39604185 Msa0327690:CDS 35.0%
CTTGTTCTACTAGGGAAAAA+TGG - chr2_4:39604214-39604233 Msa0327690:CDS 35.0%
CTACTAGGGAAAAATGGAAT+AGG - chr2_4:39604220-39604239 Msa0327690:CDS 35.0%
! TTGGTTTCTGCAGAGTATTT+AGG - chr2_4:39604298-39604317 Msa0327690:CDS 35.0%
! TGGTTTCTGCAGAGTATTTA+GGG - chr2_4:39604299-39604318 Msa0327690:CDS 35.0%
AATGTTGAGAAGTTATTGCC+TGG - chr2_4:39604406-39604425 Msa0327690:CDS 35.0%
ATGTTGAGAAGTTATTGCCT+GGG - chr2_4:39604407-39604426 Msa0327690:CDS 35.0%
TTGCCTGGGAAGTTAAAAAA+CGG - chr2_4:39604421-39604440 Msa0327690:CDS 35.0%
!!! AAACCGTTTTTTAACTTCCC+AGG + chr2_4:39604427-39604446 None:intergenic 35.0%
ACCAAAAGAAATATTGGGAG+AGG - chr2_4:39604468-39604487 Msa0327690:CDS 35.0%
TTAGTGGTGCGATTGTATTA+GGG - chr2_4:39604575-39604594 Msa0327690:CDS 35.0%
CAACCCATTTAGGAAAAACA+TGG - chr2_4:39604758-39604777 Msa0327690:CDS 35.0%
AGTTTGAATGCGTAGTCAAT+GGG + chr2_4:39602845-39602864 None:intergenic 35.0%
AAGTTTGAATGCGTAGTCAA+TGG + chr2_4:39602846-39602865 None:intergenic 35.0%
TTCCAATTGCACAAACTTCT+TGG - chr2_4:39602864-39602883 Msa0327690:three_prime_UTR 35.0%
CATCAACTTTCAGCAAAGTT+TGG - chr2_4:39603042-39603061 Msa0327690:exon 35.0%
TCAACTTTCAGCAAAGTTTG+GGG - chr2_4:39603044-39603063 Msa0327690:exon 35.0%
AATCCTTTAGGTATTCCTGT+TGG + chr2_4:39603116-39603135 None:intergenic 35.0%
CCTAACATAGAGAATCCTTT+AGG + chr2_4:39603128-39603147 None:intergenic 35.0%
CCTAAAGGATTCTCTATGTT+AGG - chr2_4:39603125-39603144 Msa0327690:CDS 35.0%
AAAGAGGCTTATTGTTTGGT+TGG + chr2_4:39603160-39603179 None:intergenic 35.0%
CCAAAAAGAGGCTTATTGTT+TGG + chr2_4:39603164-39603183 None:intergenic 35.0%
! CCAAACAATAAGCCTCTTTT+TGG - chr2_4:39603161-39603180 Msa0327690:CDS 35.0%
!!! TGGTTTTAAAGTTCTACCTG+TGG + chr2_4:39603222-39603241 None:intergenic 35.0%
TGGTAACCAAATAAACAGAG+TGG + chr2_4:39603300-39603319 None:intergenic 35.0%
! TTGTATCCATTAGGTGCTAT+TGG + chr2_4:39603320-39603339 None:intergenic 35.0%
! CCTAAAGCTTTGTATCCATT+AGG + chr2_4:39603329-39603348 None:intergenic 35.0%
! CCTAATGGATACAAAGCTTT+AGG - chr2_4:39603326-39603345 Msa0327690:CDS 35.0%
GATGTTAGACCAATCAATAG+AGG - chr2_4:39603473-39603492 Msa0327690:CDS 35.0%
TGAAGAATACTTACCTTCCT+CGG - chr2_4:39603673-39603692 Msa0327690:CDS 35.0%
AAAAACCAATTAACCGAGGA+AGG + chr2_4:39603689-39603708 None:intergenic 35.0%
CTTGTATAGTAATGCTCCAT+TGG + chr2_4:39603714-39603733 None:intergenic 35.0%
! GGAGCATTACTATACAAGAA+AGG - chr2_4:39603716-39603735 Msa0327690:CDS 35.0%
! TCTTTGTTTGCATTATCAGC+AGG + chr2_4:39603830-39603849 None:intergenic 35.0%
AACAAAGAGAGAGTCAAGAA+AGG - chr2_4:39603842-39603861 Msa0327690:CDS 35.0%
GTACATGTGAAACCAATGTA+TGG - chr2_4:39603890-39603909 Msa0327690:CDS 35.0%
CATTCACTGATATTGCTATG+TGG - chr2_4:39603918-39603937 Msa0327690:CDS 35.0%
GACATTAAGGGTGAGTAATT+TGG - chr2_4:39604039-39604058 Msa0327690:CDS 35.0%
TTAAGGGTGAGTAATTTGGA+TGG - chr2_4:39604043-39604062 Msa0327690:CDS 35.0%
CACAACATAATCTTGGTTCA+TGG - chr2_4:39604089-39604108 Msa0327690:CDS 35.0%
TGCAATGAAGCATATACAAC+AGG + chr2_4:39604166-39604185 None:intergenic 35.0%
GTTGTATATGCTTCATTGCA+TGG - chr2_4:39604166-39604185 Msa0327690:CDS 35.0%
CTTGTTCTACTAGGGAAAAA+TGG - chr2_4:39604214-39604233 Msa0327690:CDS 35.0%
CTACTAGGGAAAAATGGAAT+AGG - chr2_4:39604220-39604239 Msa0327690:CDS 35.0%
! TTGGTTTCTGCAGAGTATTT+AGG - chr2_4:39604298-39604317 Msa0327690:CDS 35.0%
! TGGTTTCTGCAGAGTATTTA+GGG - chr2_4:39604299-39604318 Msa0327690:CDS 35.0%
AATGTTGAGAAGTTATTGCC+TGG - chr2_4:39604406-39604425 Msa0327690:CDS 35.0%
ATGTTGAGAAGTTATTGCCT+GGG - chr2_4:39604407-39604426 Msa0327690:CDS 35.0%
TTGCCTGGGAAGTTAAAAAA+CGG - chr2_4:39604421-39604440 Msa0327690:CDS 35.0%
!!! AAACCGTTTTTTAACTTCCC+AGG + chr2_4:39604427-39604446 None:intergenic 35.0%
ACCAAAAGAAATATTGGGAG+AGG - chr2_4:39604468-39604487 Msa0327690:CDS 35.0%
TTAGTGGTGCGATTGTATTA+GGG - chr2_4:39604575-39604594 Msa0327690:CDS 35.0%
CAACCCATTTAGGAAAAACA+TGG - chr2_4:39604758-39604777 Msa0327690:CDS 35.0%
GTTTGAATGCGTAGTCAATG+GGG + chr2_4:39602844-39602863 None:intergenic 40.0%
TATGTCGCAATTCCAACACT+TGG + chr2_4:39602965-39602984 None:intergenic 40.0%
GAATTGCGACATACAGGTAA+CGG - chr2_4:39602972-39602991 Msa0327690:three_prime_UTR 40.0%
AATTGCGACATACAGGTAAC+GGG - chr2_4:39602973-39602992 Msa0327690:three_prime_UTR 40.0%
GAACCAACAGGAATACCTAA+AGG - chr2_4:39603110-39603129 Msa0327690:CDS 40.0%
GATGTTTCTTCAAGTACCAC+AGG - chr2_4:39603203-39603222 Msa0327690:CDS 40.0%
ACAAGTGTGTAATCAACTGG+TGG + chr2_4:39603242-39603261 None:intergenic 40.0%
GACACAAGTGTGTAATCAAC+TGG + chr2_4:39603245-39603264 None:intergenic 40.0%
! TTGAGTAGCCTTGAAGAATG+CGG + chr2_4:39603273-39603292 None:intergenic 40.0%
TGGTTACCAATAGCACCTAA+TGG - chr2_4:39603311-39603330 Msa0327690:CDS 40.0%
GGAAGGTTTATCTTGTGTTG+TGG + chr2_4:39603363-39603382 None:intergenic 40.0%
GCTTGAGTTCCTCTATTGAT+TGG + chr2_4:39603485-39603504 None:intergenic 40.0%
ACTTACCTTCCTCGGTTAAT+TGG - chr2_4:39603681-39603700 Msa0327690:CDS 40.0%
GGAGAAAAACCAATTAACCG+AGG + chr2_4:39603693-39603712 None:intergenic 40.0%
!! CCATTTTGTGCTATTGGAAC+AGG + chr2_4:39603755-39603774 None:intergenic 40.0%
CCTGTTCCAATAGCACAAAA+TGG - chr2_4:39603752-39603771 Msa0327690:CDS 40.0%
AAATGGAACTAACCTTCCTC+AGG - chr2_4:39603769-39603788 Msa0327690:CDS 40.0%
TGTTTGCATTATCAGCAGGT+AGG + chr2_4:39603826-39603845 None:intergenic 40.0%
CATGTGAAACCAATGTATGG+AGG - chr2_4:39603893-39603912 Msa0327690:CDS 40.0%
GTGAATGTTCCTCCATACAT+TGG + chr2_4:39603905-39603924 None:intergenic 40.0%
!! TTCTACCCTTTTAATGGACC+TGG - chr2_4:39603944-39603963 Msa0327690:CDS 40.0%
!! TCTACCCTTTTAATGGACCT+GGG - chr2_4:39603945-39603964 Msa0327690:CDS 40.0%
GGGAAAATAGGTGAACATGT+TGG - chr2_4:39604001-39604020 Msa0327690:CDS 40.0%
!! TAGGTGAACATGTTGGTGAT+TGG - chr2_4:39604008-39604027 Msa0327690:CDS 40.0%
!! AGGTGAACATGTTGGTGATT+GGG - chr2_4:39604009-39604028 Msa0327690:CDS 40.0%
! ATTGGGAGCATGTGACATTA+AGG - chr2_4:39604026-39604045 Msa0327690:CDS 40.0%
! TTGGGAGCATGTGACATTAA+GGG - chr2_4:39604027-39604046 Msa0327690:CDS 40.0%
TCTCAACTTGAGTTCCAAGA+TGG - chr2_4:39604121-39604140 Msa0327690:CDS 40.0%
CTTGAGTTCCAAGATGGAAT+AGG - chr2_4:39604127-39604146 Msa0327690:CDS 40.0%
TTGTTGCACCTATTCCATCT+TGG + chr2_4:39604138-39604157 None:intergenic 40.0%
CATGCATCATATTCACATGC+TGG - chr2_4:39604190-39604209 Msa0327690:CDS 40.0%
!! ATGCTGGTCTTGTTCTACTA+GGG - chr2_4:39604206-39604225 Msa0327690:CDS 40.0%
TCTAGACTATAGTCCACATG+TGG + chr2_4:39604373-39604392 None:intergenic 40.0%
! GCCTCTCCCAATATTTCTTT+TGG + chr2_4:39604472-39604491 None:intergenic 40.0%
AAAGAAATATTGGGAGAGGC+AGG - chr2_4:39604472-39604491 Msa0327690:CDS 40.0%
!! TTCTTTTGCTTTGGACCTGT+TGG + chr2_4:39604499-39604518 None:intergenic 40.0%
CTTAGTGGTGCGATTGTATT+AGG - chr2_4:39604574-39604593 Msa0327690:CDS 40.0%
TAGTGGTGCGATTGTATTAG+GGG - chr2_4:39604576-39604595 Msa0327690:CDS 40.0%
! CATCAAATGACCTTAGCCTT+TGG - chr2_4:39604727-39604746 Msa0327690:CDS 40.0%
GTTTGAATGCGTAGTCAATG+GGG + chr2_4:39602844-39602863 None:intergenic 40.0%
TATGTCGCAATTCCAACACT+TGG + chr2_4:39602965-39602984 None:intergenic 40.0%
GAATTGCGACATACAGGTAA+CGG - chr2_4:39602972-39602991 Msa0327690:three_prime_UTR 40.0%
AATTGCGACATACAGGTAAC+GGG - chr2_4:39602973-39602992 Msa0327690:three_prime_UTR 40.0%
GAACCAACAGGAATACCTAA+AGG - chr2_4:39603110-39603129 Msa0327690:CDS 40.0%
GATGTTTCTTCAAGTACCAC+AGG - chr2_4:39603203-39603222 Msa0327690:CDS 40.0%
ACAAGTGTGTAATCAACTGG+TGG + chr2_4:39603242-39603261 None:intergenic 40.0%
GACACAAGTGTGTAATCAAC+TGG + chr2_4:39603245-39603264 None:intergenic 40.0%
! TTGAGTAGCCTTGAAGAATG+CGG + chr2_4:39603273-39603292 None:intergenic 40.0%
TGGTTACCAATAGCACCTAA+TGG - chr2_4:39603311-39603330 Msa0327690:CDS 40.0%
GGAAGGTTTATCTTGTGTTG+TGG + chr2_4:39603363-39603382 None:intergenic 40.0%
GCTTGAGTTCCTCTATTGAT+TGG + chr2_4:39603485-39603504 None:intergenic 40.0%
ACTTACCTTCCTCGGTTAAT+TGG - chr2_4:39603681-39603700 Msa0327690:CDS 40.0%
GGAGAAAAACCAATTAACCG+AGG + chr2_4:39603693-39603712 None:intergenic 40.0%
!! CCATTTTGTGCTATTGGAAC+AGG + chr2_4:39603755-39603774 None:intergenic 40.0%
CCTGTTCCAATAGCACAAAA+TGG - chr2_4:39603752-39603771 Msa0327690:CDS 40.0%
AAATGGAACTAACCTTCCTC+AGG - chr2_4:39603769-39603788 Msa0327690:CDS 40.0%
TGTTTGCATTATCAGCAGGT+AGG + chr2_4:39603826-39603845 None:intergenic 40.0%
CATGTGAAACCAATGTATGG+AGG - chr2_4:39603893-39603912 Msa0327690:CDS 40.0%
GTGAATGTTCCTCCATACAT+TGG + chr2_4:39603905-39603924 None:intergenic 40.0%
!! TTCTACCCTTTTAATGGACC+TGG - chr2_4:39603944-39603963 Msa0327690:CDS 40.0%
!! TCTACCCTTTTAATGGACCT+GGG - chr2_4:39603945-39603964 Msa0327690:CDS 40.0%
GGGAAAATAGGTGAACATGT+TGG - chr2_4:39604001-39604020 Msa0327690:CDS 40.0%
!! TAGGTGAACATGTTGGTGAT+TGG - chr2_4:39604008-39604027 Msa0327690:CDS 40.0%
!! AGGTGAACATGTTGGTGATT+GGG - chr2_4:39604009-39604028 Msa0327690:CDS 40.0%
! ATTGGGAGCATGTGACATTA+AGG - chr2_4:39604026-39604045 Msa0327690:CDS 40.0%
! TTGGGAGCATGTGACATTAA+GGG - chr2_4:39604027-39604046 Msa0327690:CDS 40.0%
TCTCAACTTGAGTTCCAAGA+TGG - chr2_4:39604121-39604140 Msa0327690:CDS 40.0%
CTTGAGTTCCAAGATGGAAT+AGG - chr2_4:39604127-39604146 Msa0327690:CDS 40.0%
TTGTTGCACCTATTCCATCT+TGG + chr2_4:39604138-39604157 None:intergenic 40.0%
CATGCATCATATTCACATGC+TGG - chr2_4:39604190-39604209 Msa0327690:CDS 40.0%
!! ATGCTGGTCTTGTTCTACTA+GGG - chr2_4:39604206-39604225 Msa0327690:CDS 40.0%
TCTAGACTATAGTCCACATG+TGG + chr2_4:39604373-39604392 None:intergenic 40.0%
! GCCTCTCCCAATATTTCTTT+TGG + chr2_4:39604472-39604491 None:intergenic 40.0%
AAAGAAATATTGGGAGAGGC+AGG - chr2_4:39604472-39604491 Msa0327690:CDS 40.0%
!! TTCTTTTGCTTTGGACCTGT+TGG + chr2_4:39604499-39604518 None:intergenic 40.0%
CTTAGTGGTGCGATTGTATT+AGG - chr2_4:39604574-39604593 Msa0327690:CDS 40.0%
TAGTGGTGCGATTGTATTAG+GGG - chr2_4:39604576-39604595 Msa0327690:CDS 40.0%
! CATCAAATGACCTTAGCCTT+TGG - chr2_4:39604727-39604746 Msa0327690:CDS 40.0%
GGCCAAGAAGTTTGTGCAAT+TGG + chr2_4:39602869-39602888 None:intergenic 45.0%
GCACAAACTTCTTGGCCAAA+AGG - chr2_4:39602872-39602891 Msa0327690:three_prime_UTR 45.0%
GTGTTGGAATTGCGACATAC+AGG - chr2_4:39602966-39602985 Msa0327690:three_prime_UTR 45.0%
CTTGTGTTGTGGTGACAACA+TGG + chr2_4:39603352-39603371 None:intergenic 45.0%
TGAGTCGTCTTCGTGGATTT+GGG - chr2_4:39603427-39603446 Msa0327690:CDS 45.0%
AATAGAGGAACTCAAGCTCC+TGG - chr2_4:39603488-39603507 Msa0327690:CDS 45.0%
GGTACCTTCGTTGCACAAAA+TGG - chr2_4:39603521-39603540 Msa0327690:CDS 45.0%
ACCTTCGTTGCACAAAATGG+TGG - chr2_4:39603524-39603543 Msa0327690:CDS 45.0%
CCTTCGTTGCACAAAATGGT+GGG - chr2_4:39603525-39603544 Msa0327690:CDS 45.0%
! CAATAGGAACCATCGGTGTT+AGG + chr2_4:39603797-39603816 None:intergenic 45.0%
CTAACACCGATGGTTCCTAT+TGG - chr2_4:39603795-39603814 Msa0327690:CDS 45.0%
GTCAAGCCAATAGGAACCAT+CGG + chr2_4:39603804-39603823 None:intergenic 45.0%
CTCTCCCAGGTCCATTAAAA+GGG + chr2_4:39603952-39603971 None:intergenic 45.0%
!! AACTCTACTTTTGCTCTCCC+AGG + chr2_4:39603965-39603984 None:intergenic 45.0%
!! CATGCTGGTCTTGTTCTACT+AGG - chr2_4:39604205-39604224 Msa0327690:CDS 45.0%
CTGAAGTTAAAGAGCCAGCA+TGG - chr2_4:39604323-39604342 Msa0327690:CDS 45.0%
TGTTAAAGGGCCAAAGGCTA+AGG + chr2_4:39604740-39604759 None:intergenic 45.0%
! ATGGGTTGTTAAAGGGCCAA+AGG + chr2_4:39604746-39604765 None:intergenic 45.0%
GGCCCTTTAACAACCCATTT+AGG - chr2_4:39604748-39604767 Msa0327690:CDS 45.0%
GGCCAAGAAGTTTGTGCAAT+TGG + chr2_4:39602869-39602888 None:intergenic 45.0%
GCACAAACTTCTTGGCCAAA+AGG - chr2_4:39602872-39602891 Msa0327690:three_prime_UTR 45.0%
GTGTTGGAATTGCGACATAC+AGG - chr2_4:39602966-39602985 Msa0327690:three_prime_UTR 45.0%
CTTGTGTTGTGGTGACAACA+TGG + chr2_4:39603352-39603371 None:intergenic 45.0%
TGAGTCGTCTTCGTGGATTT+GGG - chr2_4:39603427-39603446 Msa0327690:CDS 45.0%
AATAGAGGAACTCAAGCTCC+TGG - chr2_4:39603488-39603507 Msa0327690:CDS 45.0%
GGTACCTTCGTTGCACAAAA+TGG - chr2_4:39603521-39603540 Msa0327690:CDS 45.0%
ACCTTCGTTGCACAAAATGG+TGG - chr2_4:39603524-39603543 Msa0327690:CDS 45.0%
CCTTCGTTGCACAAAATGGT+GGG - chr2_4:39603525-39603544 Msa0327690:CDS 45.0%
! CAATAGGAACCATCGGTGTT+AGG + chr2_4:39603797-39603816 None:intergenic 45.0%
CTAACACCGATGGTTCCTAT+TGG - chr2_4:39603795-39603814 Msa0327690:CDS 45.0%
GTCAAGCCAATAGGAACCAT+CGG + chr2_4:39603804-39603823 None:intergenic 45.0%
CTCTCCCAGGTCCATTAAAA+GGG + chr2_4:39603952-39603971 None:intergenic 45.0%
!! AACTCTACTTTTGCTCTCCC+AGG + chr2_4:39603965-39603984 None:intergenic 45.0%
!! CATGCTGGTCTTGTTCTACT+AGG - chr2_4:39604205-39604224 Msa0327690:CDS 45.0%
CTGAAGTTAAAGAGCCAGCA+TGG - chr2_4:39604323-39604342 Msa0327690:CDS 45.0%
TGTTAAAGGGCCAAAGGCTA+AGG + chr2_4:39604740-39604759 None:intergenic 45.0%
! ATGGGTTGTTAAAGGGCCAA+AGG + chr2_4:39604746-39604765 None:intergenic 45.0%
GGCCCTTTAACAACCCATTT+AGG - chr2_4:39604748-39604767 Msa0327690:CDS 45.0%
!! CATACAGGTAACGGGTTTGC+AGG - chr2_4:39602981-39603000 Msa0327690:three_prime_UTR 50.0%
!! TCCTGTTGGTTCGTACACAG+AGG + chr2_4:39603102-39603121 None:intergenic 50.0%
GTCGAACACCGCATTCTTCA+AGG - chr2_4:39603262-39603281 Msa0327690:CDS 50.0%
! ACGACTCACATTGGTCTGTG+AGG + chr2_4:39603415-39603434 None:intergenic 50.0%
ACCAATGTGAGTCGTCTTCG+TGG - chr2_4:39603420-39603439 Msa0327690:CDS 50.0%
TCCACGAAGACGACTCACAT+TGG + chr2_4:39603424-39603443 None:intergenic 50.0%
GTGAGTCGTCTTCGTGGATT+TGG - chr2_4:39603426-39603445 Msa0327690:CDS 50.0%
GAGTCGTCTTCGTGGATTTG+GGG - chr2_4:39603428-39603447 Msa0327690:CDS 50.0%
! CCCACCATTTTGTGCAACGA+AGG + chr2_4:39603528-39603547 None:intergenic 50.0%
AGCAGGTAGGTCAAGCCAAT+AGG + chr2_4:39603813-39603832 None:intergenic 50.0%
GCTCTCCCAGGTCCATTAAA+AGG + chr2_4:39603953-39603972 None:intergenic 50.0%
!! CATACAGGTAACGGGTTTGC+AGG - chr2_4:39602981-39603000 Msa0327690:three_prime_UTR 50.0%
!! TCCTGTTGGTTCGTACACAG+AGG + chr2_4:39603102-39603121 None:intergenic 50.0%
GTCGAACACCGCATTCTTCA+AGG - chr2_4:39603262-39603281 Msa0327690:CDS 50.0%
! ACGACTCACATTGGTCTGTG+AGG + chr2_4:39603415-39603434 None:intergenic 50.0%
ACCAATGTGAGTCGTCTTCG+TGG - chr2_4:39603420-39603439 Msa0327690:CDS 50.0%
TCCACGAAGACGACTCACAT+TGG + chr2_4:39603424-39603443 None:intergenic 50.0%
GTGAGTCGTCTTCGTGGATT+TGG - chr2_4:39603426-39603445 Msa0327690:CDS 50.0%
GAGTCGTCTTCGTGGATTTG+GGG - chr2_4:39603428-39603447 Msa0327690:CDS 50.0%
! CCCACCATTTTGTGCAACGA+AGG + chr2_4:39603528-39603547 None:intergenic 50.0%
AGCAGGTAGGTCAAGCCAAT+AGG + chr2_4:39603813-39603832 None:intergenic 50.0%
GCTCTCCCAGGTCCATTAAA+AGG + chr2_4:39603953-39603972 None:intergenic 50.0%
!! ACAGGTAACGGGTTTGCAGG+CGG - chr2_4:39602984-39603003 Msa0327690:three_prime_UTR 55.0%
GCGGATTCCTCGATCTAGGT+GGG - chr2_4:39603003-39603022 Msa0327690:three_prime_UTR 55.0%
! AAAGTTTGGGGCGCGTACGA+GGG - chr2_4:39603056-39603075 Msa0327690:exon 55.0%
!! ACAGAGGCGCCTTGATTGTC+CGG + chr2_4:39603086-39603105 None:intergenic 55.0%
GCCTCTGTGTACGAACCAAC+AGG - chr2_4:39603098-39603117 Msa0327690:CDS 55.0%
CAAGCTCCTGGTGTTCGAGT+CGG - chr2_4:39603500-39603519 Msa0327690:CDS 55.0%
!! AAGGTACCGACTCGAACACC+AGG + chr2_4:39603509-39603528 None:intergenic 55.0%
! CGGTGTTAGGATCCTGAGGA+AGG + chr2_4:39603784-39603803 None:intergenic 55.0%
!! CCATCGGTGTTAGGATCCTG+AGG + chr2_4:39603788-39603807 None:intergenic 55.0%
CCTCAGGATCCTAACACCGA+TGG - chr2_4:39603785-39603804 Msa0327690:CDS 55.0%
TAGGCAATGGGGTCCACATG+TGG - chr2_4:39604357-39604376 Msa0327690:CDS 55.0%
!! ACAGGTAACGGGTTTGCAGG+CGG - chr2_4:39602984-39603003 Msa0327690:three_prime_UTR 55.0%
GCGGATTCCTCGATCTAGGT+GGG - chr2_4:39603003-39603022 Msa0327690:three_prime_UTR 55.0%
! AAAGTTTGGGGCGCGTACGA+GGG - chr2_4:39603056-39603075 Msa0327690:exon 55.0%
!! ACAGAGGCGCCTTGATTGTC+CGG + chr2_4:39603086-39603105 None:intergenic 55.0%
GCCTCTGTGTACGAACCAAC+AGG - chr2_4:39603098-39603117 Msa0327690:CDS 55.0%
CAAGCTCCTGGTGTTCGAGT+CGG - chr2_4:39603500-39603519 Msa0327690:CDS 55.0%
!! AAGGTACCGACTCGAACACC+AGG + chr2_4:39603509-39603528 None:intergenic 55.0%
! CGGTGTTAGGATCCTGAGGA+AGG + chr2_4:39603784-39603803 None:intergenic 55.0%
!! CCATCGGTGTTAGGATCCTG+AGG + chr2_4:39603788-39603807 None:intergenic 55.0%
CCTCAGGATCCTAACACCGA+TGG - chr2_4:39603785-39603804 Msa0327690:CDS 55.0%
TAGGCAATGGGGTCCACATG+TGG - chr2_4:39604357-39604376 Msa0327690:CDS 55.0%
GTAGTCAATGGGGCGAGAGC+GGG + chr2_4:39602834-39602853 None:intergenic 60.0%
CGTAGTCAATGGGGCGAGAG+CGG + chr2_4:39602835-39602854 None:intergenic 60.0%
! GCAGGCGGATTCCTCGATCT+AGG - chr2_4:39602999-39603018 Msa0327690:three_prime_UTR 60.0%
! GGCGGATTCCTCGATCTAGG+TGG - chr2_4:39603002-39603021 Msa0327690:three_prime_UTR 60.0%
CTTGCAGCCCACCTAGATCG+AGG + chr2_4:39603013-39603032 None:intergenic 60.0%
! CAAAGTTTGGGGCGCGTACG+AGG - chr2_4:39603055-39603074 Msa0327690:exon 60.0%
!! CAGAGGCGCCTTGATTGTCC+GGG + chr2_4:39603085-39603104 None:intergenic 60.0%
TTGGGAGAGGCAGGACCAAC+AGG - chr2_4:39604481-39604500 Msa0327690:CDS 60.0%
GTAGTCAATGGGGCGAGAGC+GGG + chr2_4:39602834-39602853 None:intergenic 60.0%
CGTAGTCAATGGGGCGAGAG+CGG + chr2_4:39602835-39602854 None:intergenic 60.0%
! GCAGGCGGATTCCTCGATCT+AGG - chr2_4:39602999-39603018 Msa0327690:three_prime_UTR 60.0%
! GGCGGATTCCTCGATCTAGG+TGG - chr2_4:39603002-39603021 Msa0327690:three_prime_UTR 60.0%
CTTGCAGCCCACCTAGATCG+AGG + chr2_4:39603013-39603032 None:intergenic 60.0%
! CAAAGTTTGGGGCGCGTACG+AGG - chr2_4:39603055-39603074 Msa0327690:exon 60.0%
!! CAGAGGCGCCTTGATTGTCC+GGG + chr2_4:39603085-39603104 None:intergenic 60.0%
TTGGGAGAGGCAGGACCAAC+AGG - chr2_4:39604481-39604500 Msa0327690:CDS 60.0%
ATGGGGCGAGAGCGGGATCT+AGG + chr2_4:39602827-39602846 None:intergenic 65.0%
GAGGGTGGCCCGGACAATCA+AGG - chr2_4:39603074-39603093 Msa0327690:CDS 65.0%
ATGGGGCGAGAGCGGGATCT+AGG + chr2_4:39602827-39602846 None:intergenic 65.0%
GAGGGTGGCCCGGACAATCA+AGG - chr2_4:39603074-39603093 Msa0327690:CDS 65.0%
! GTTTGGGGCGCGTACGAGGG+TGG - chr2_4:39603059-39603078 Msa0327690:exon 70.0%
! GTTTGGGGCGCGTACGAGGG+TGG - chr2_4:39603059-39603078 Msa0327690:exon 70.0%
! GGGCGCGTACGAGGGTGGCC+CGG - chr2_4:39603064-39603083 Msa0327690:CDS 80.0%
! GGGCGCGTACGAGGGTGGCC+CGG - chr2_4:39603064-39603083 Msa0327690:CDS 80.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 39602779 39604824 39602779 ID=Msa0327690;Name=Msa0327690
chr2_4 mRNA 39602779 39604824 39602779 ID=Msa0327690-mRNA-1;Parent=Msa0327690;Name=Msa0327690-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.5|1|1|1|2|281|556
chr2_4 exon 39602779 39604615 39602779 ID=Msa0327690-mRNA-1:exon:11966;Parent=Msa0327690-mRNA-1
chr2_4 exon 39604710 39604824 39604710 ID=Msa0327690-mRNA-1:exon:11965;Parent=Msa0327690-mRNA-1
chr2_4 CDS 39604710 39604824 39604710 ID=Msa0327690-mRNA-1:cds;Parent=Msa0327690-mRNA-1
chr2_4 CDS 39603060 39604615 39603060 ID=Msa0327690-mRNA-1:cds;Parent=Msa0327690-mRNA-1
chr2_4 three_prime_UTR 39602779 39603059 39602779 ID=Msa0327690-mRNA-1:three_prime_utr;Parent=Msa0327690-mRNA-1
Gene Sequence

>Msa0327690

ATGTTTTTGTTTGTAGAGAATAAGAACATCTTCAAGAAAAAACGACCTAGATCCCGCTCTCGCCCCATTGACTACGCATTCAAACTTCCAATTGCACAAACTTCTTGGCCAAAAGGTAACGGGTTTGCAGGCGGATTCCTCGATCTAGGTGGGCTGCAAGTGTATCAAGCATCAACTTTCAGCAAAGTTTGGGGCGCGTACGAGGGTGGCCCGGACAATCAAGGCGCCTCTGTGTACGAACCAACAGGAATACCTAAAGGATTCTCTATGTTAGGTAGCTACAGCCAACCAAACAATAAGCCTCTTTTTGGATATGTTTTTGTAGCAAAGGATGTTTCTTCAAGTACCACAGGTAGAACTTTAAAACCACCAGTTGATTACACACTTGTGTCGAACACCGCATTCTTCAAGGCTACTCAAGATTCCACTCTGTTTATTTGGTTACCAATAGCACCTAATGGATACAAAGCTTTAGGCCATGTTGTCACCACAACACAAGATAAACCTTCCTTTGATAAAATCATGTGTGTCAGATCAGACCTCACAGACCAATGTGAGTCGTCTTCGTGGATTTGGGGATCAAACAGCTTCAATTTCTACGATGTTAGACCAATCAATAGAGGAACTCAAGCTCCTGGTGTTCGAGTCGGTACCTTCGTTGCACAAAATGGTGGGAATACTAACCCTCCATCAATTTCATGTTTGAAGAATCTCAAGTCTATTTCACAAATCATGCCTAATAAAAAACAAATCGAGGCAATGCTCCAAGTTTACTCTCCATTTCTATACTTACATTCTGATGAAGAATACTTACCTTCCTCGGTTAATTGGTTTTTCTCCAATGGAGCATTACTATACAAGAAAGGGCAAGAATCAAATCCTGTTCCAATAGCACAAAATGGAACTAACCTTCCTCAGGATCCTAACACCGATGGTTCCTATTGGCTTGACCTACCTGCTGATAATGCAAACAAAGAGAGAGTCAAGAAAGGTAATCTTCAAAGTGCAGAATCTTATGTACATGTGAAACCAATGTATGGAGGAACATTCACTGATATTGCTATGTGGATTTTCTACCCTTTTAATGGACCTGGGAGAGCAAAAGTAGAGTTCATAAATGTGAAATTAGGGAAAATAGGTGAACATGTTGGTGATTGGGAGCATGTGACATTAAGGGTGAGTAATTTGGATGGTCAATTATGGCATGTATATTTCTCACAACATAATCTTGGTTCATGGATTGATTCATCTCAACTTGAGTTCCAAGATGGAATAGGTGCAACAAAAAGACCTGTTGTATATGCTTCATTGCATGGTCATGCATCATATTCACATGCTGGTCTTGTTCTACTAGGGAAAAATGGAATAGGTGCAATAGATGATACTAATAAAGGAAAGAATGTTATGGATATGGGAAAATTTGTATTGGTTTCTGCAGAGTATTTAGGGTCTGAAGTTAAAGAGCCAGCATGGTTGAATTTTTTTAGGCAATGGGGTCCACATGTGGACTATAGTCTAGATGATGAGTTGAAGAATGTTGAGAAGTTATTGCCTGGGAAGTTAAAAAACGGTTTTGAAGATATTATTAGGGACTTACCAAAAGAAATATTGGGAGAGGCAGGACCAACAGGTCCAAAGCAAAAGAATAATTGGAGTGGTGATGAAGTTTGA
Protein sequence

>Msa0327690

MFLFVENKNIFKKKRPRSRSRPIDYAFKLPIAQTSWPKGNGFAGGFLDLGGLQVYQASTFSKVWGAYEGGPDNQGASVYEPTGIPKGFSMLGSYSQPNNKPLFGYVFVAKDVSSSTTGRTLKPPVDYTLVSNTAFFKATQDSTLFIWLPIAPNGYKALGHVVTTTQDKPSFDKIMCVRSDLTDQCESSSWIWGSNSFNFYDVRPINRGTQAPGVRVGTFVAQNGGNTNPPSISCLKNLKSISQIMPNKKQIEAMLQVYSPFLYLHSDEEYLPSSVNWFFSNGALLYKKGQESNPVPIAQNGTNLPQDPNTDGSYWLDLPADNANKERVKKGNLQSAESYVHVKPMYGGTFTDIAMWIFYPFNGPGRAKVEFINVKLGKIGEHVGDWEHVTLRVSNLDGQLWHVYFSQHNLGSWIDSSQLEFQDGIGATKRPVVYASLHGHASYSHAGLVLLGKNGIGAIDDTNKGKNVMDMGKFVLVSAEYLGSEVKEPAWLNFFRQWGPHVDYSLDDELKNVEKLLPGKLKNGFEDIIRDLPKEILGEAGPTGPKQKNNWSGDEV*