AlfalfaGEDB | Msa0327670

M. sativa cultivar zhongmu-4 / Msa0327670

KEGG: -
GO: -
PFAM: PF06101.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0327670	XP_003595840.1	96.246	586	22	0	1	586	1	586	0.0	1172

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0327670	sp\|Q501D1\|Y1490_ARATH	42.162	555	289	13	56	585	23	570	3.22e-145	434

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0022260	Msa0327670	0.800884	1.168833e-48	-8.615850e-47
Msa0036890	Msa0327670	0.836810	7.522755e-57	-8.615850e-47
Msa0084970	Msa0327670	0.847597	1.045387e-59	-8.615850e-47
Msa0101340	Msa0327670	0.808387	3.175278e-50	-8.615850e-47
Msa0145680	Msa0327670	0.804735	1.872856e-49	-8.615850e-47
Msa0176900	Msa0327670	0.829213	5.836241e-55	-8.615850e-47
Msa0241610	Msa0327670	0.831279	1.827015e-55	-8.615850e-47
Msa0307270	Msa0327670	0.813632	2.319916e-51	-8.615850e-47
Msa0327670	Msa0327690	0.959375	2.259354e-117	-8.615850e-47
Msa0327670	Msa0400420	0.824058	9.916469e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0327670	MtrunA17_Chr2g0309181	96.246	586	22	0	1	586	1	586	0.0	1172
Msa0327670	MtrunA17_Chr2g0309171	76.329	621	110	3	3	586	532	1152	0.0	952
Msa0327670	MtrunA17_Chr2g0309171	81.081	518	93	2	69	582	14	530	0.0	878
Msa0327670	MtrunA17_Chr2g0309191	77.555	548	116	2	39	586	13	553	0.0	894
Msa0327670	MtrunA17_Chr4g0074491	75.824	546	126	2	47	586	2	547	0.0	847
Msa0327670	MtrunA17_Chr2g0310081	57.636	550	205	8	47	586	48	579	0.0	633
Msa0327670	MtrunA17_Chr2g0309131	49.636	550	192	10	47	585	10	485	3.86e-174	502
Msa0327670	MtrunA17_Chr1g0190341	44.203	552	281	10	50	585	18	558	1.29e-162	475
Msa0327670	MtrunA17_Chr1g0190371	44.203	552	281	10	50	585	18	558	1.29e-162	475
Msa0327670	MtrunA17_Chr5g0395701	42.167	600	313	12	12	585	14	605	5.65e-158	465

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0327670	AT2G44260.1	57.615	545	220	6	43	585	17	552	0.0	651
Msa0327670	AT2G44260.2	58.767	519	205	5	69	585	71	582	0.0	637
Msa0327670	AT2G44230.1	54.529	541	231	6	50	586	13	542	0.0	606
Msa0327670	AT3G01870.1	46.801	594	280	12	8	585	10	583	0.0	527
Msa0327670	AT3G01880.1	47.834	554	270	8	41	585	46	589	7.21e-175	508
Msa0327670	AT5G18490.1	44.190	568	287	10	31	586	3	552	1.34e-161	473
Msa0327670	AT3G04350.1	41.463	574	305	10	32	586	5	566	1.46e-153	453
Msa0327670	AT5G43950.1	42.857	546	292	9	56	585	23	564	5.13e-150	444
Msa0327670	AT3G04350.2	42.272	537	283	9	69	586	16	544	1.13e-148	439
Msa0327670	AT1G04090.1	42.162	555	289	13	56	585	23	570	3.27e-146	434

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Find 165 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAGGATTATTAAAAT+GGG	0.467186	2_4:-39591779	Msa0327670:exon
AAAGAAATGTTGGGAGAGGC+AGG	0.484817	2_4:-39588004	Msa0327670:CDS
AAAGAGGCTTATTGTTTGGT+TGG	0.482475	2_4:+39589319	None:intergenic
AAAGAGTTGACTCTTTGATA+AGG	0.413636	2_4:-39591835	Msa0327670:five_prime_UTR
AAAGTTTGGGGCGCGTACGA+GGG	0.602237	2_4:-39589420	Msa0327670:CDS
AAATGGAACTAACCTTCCTC+AGG	0.545452	2_4:-39588707	Msa0327670:CDS
AACAAAGAGAGAGTCAAGAA+AGG	0.571578	2_4:-39588634	Msa0327670:CDS
AACCACATTTATATATTTAT+AGG	0.223909	2_4:-39591950	Msa0327670:five_prime_UTR
AAGATTCCACTCTGTTTATT+TGG	0.160989	2_4:-39589185	Msa0327670:CDS
AAGCAAAAGAATAATTGGAG+TGG	0.643244	2_4:-39587968	Msa0327670:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTGTTCACATGTAGATAT+GGG	-	chr2_4:39588099-39588118	Msa0327670:CDS	30.0%
CAGTGATGTAGATAAATAGT+TGG	-	chr2_4:39588226-39588245	Msa0327670:CDS	30.0%
GTTTGATGCCTTAAAACAAT+AGG	+	chr2_4:39588650-39588669	None:intergenic	30.0%
AAGTAAGGACTAAACTTACA+AGG	-	chr2_4:39589212-39589231	Msa0327670:CDS	30.0%
TGTTTGTTTATGAAAAACCG+TGG	-	chr2_4:39589720-39589739	Msa0327670:intron	30.0%
GGGAAAATCTTGTAGAATAA+AGG	+	chr2_4:39589831-39589850	None:intergenic	30.0%
ACAATGTGTTAATGATCTTG+CGG	+	chr2_4:39589906-39589925	None:intergenic	30.0%
TCACTACTAGAATGTATAAG+AGG	+	chr2_4:39590088-39590107	None:intergenic	30.0%
ATGCTAATTATACCAAGTGT+TGG	-	chr2_4:39590112-39590131	Msa0327670:intron	30.0%
ATCAACTTTCAGCAAAGTTT+GGG	-	chr2_4:39590205-39590224	Msa0327670:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	39587649	39592011	39587649	ID=Msa0327670;Name=Msa0327670
chr2_4	mRNA	39587649	39592011	39587649	ID=Msa0327670-mRNA-1;Parent=Msa0327670;Name=Msa0327670-mRNA-1;_AED=0.34;_eAED=0.34;_QI=228\|1\|1\|1\|1\|1\|3\|306\|586
chr2_4	exon	39587649	39589510	39587649	ID=Msa0327670-mRNA-1:exon:11976;Parent=Msa0327670-mRNA-1
chr2_4	exon	39589605	39589703	39589605	ID=Msa0327670-mRNA-1:exon:11975;Parent=Msa0327670-mRNA-1
chr2_4	exon	39591678	39592011	39591678	ID=Msa0327670-mRNA-1:exon:11974;Parent=Msa0327670-mRNA-1
chr2_4	five_prime_UTR	39591784	39592011	39591784	ID=Msa0327670-mRNA-1:five_prime_utr;Parent=Msa0327670-mRNA-1
chr2_4	CDS	39591678	39591783	39591678	ID=Msa0327670-mRNA-1:cds;Parent=Msa0327670-mRNA-1
chr2_4	CDS	39589605	39589703	39589605	ID=Msa0327670-mRNA-1:cds;Parent=Msa0327670-mRNA-1
chr2_4	CDS	39587955	39589510	39587955	ID=Msa0327670-mRNA-1:cds;Parent=Msa0327670-mRNA-1
chr2_4	three_prime_UTR	39587649	39587954	39587649	ID=Msa0327670-mRNA-1:three_prime_utr;Parent=Msa0327670-mRNA-1

Gene Sequence

>Msa0327670

ATGGGTGTTAATGTGAATGTGAGGATTCTTTGTGTTTGTGTTGTGCTTTTCATGGCAATTGAAGCAATGGGAGTTCATCAAACTGCACCAATGGATCAATTTTCAGAGAATAAGAACATCTTCAAGAAAAAACGACCTAGATCCCGCTCTCGCCCCATTGACTACGCATTCAAACTTCCAATTGCACAAACTTCTTGGCCAAAAGGTAACGGGTTTGCAGGCGGATTCCTCGATCTAGGTGGGCTGCAAGTGTATCAAGCATCAACTTTCAGCAAAGTTTGGGGCGCGTACGAGGGTGGCCCGGACAATCAAGGCGCCTCTGTGTACGAACCAACAGGAATACCTAAAGGATTCTCTATGTTAGGTAGCTACAGCCAACCAAACAATAAGCCTCTTTTTGGATATGTTTTTGTAGCAAAGGATGTTTCTTCAAGTACCACAGGTAGAACTTTAAAACCACCGGTTGATTACACACTTGTGTCGAACACCGCATTCTTCAAGGCTACTCAAGATTCCACTCTGTTTATTTGGTTACCAATAGCACCTAATGGATACAAAGCTTTAGGCCATGTTGTCACCACAACACAAGATAAACCTTCCTTTGATAAAATCATGTGTGTCAGATCAGACCTCACAGACCAATGTGAGTCGTCTTCGTGGATTTGGGGATCAAACAGCTTCAATTTCTACGATGTTAGACCAATCAATAGAGGAACTCAAGCTCCTGGTGTTCGAGTCGGTACCTTCGTTGCACAAAATGGTGGGAATACTAACCCTCCATCAATTTCATGTTTGAAGAATCTCAAGTCTATTTCACAAATCATGCCTAATAAAAAACAAATCGAGGCAATGCTCCAAGTTTACTCTCCATTTCTATACTTACATTCTGATGAAGAATACTTACCTTCCTCGGTTAATTGGTTTTTCTCCAATGGAGCATTACTATACAAGAAAGGGCAAGAATCAAATCCTGTTCCAATAGCACAAAATGGAACTAACCTTCCTCAGGATCCTAACACCGATGGTTCCTATTGGCTTGACCTACCTGCTGATAATGCAAACAAAGAGAGAGTCAAGAAAGGTAATCTTCAAAGTGCAGAATCTTATGTACATGTGAAACCAATGTATGGAGGAACATTCACTGATATTGCTATGTGGATTTTCTACCCTTTTAATGGACCTGGGAGAGCAAAAGTAGAGTTCATAAATGTGAAATTAGGGAAAATAGGTGAACATGTTGGTGATTGGGAGCATGTGACATTAAGGGTGAGTAATTTGGATGGTCAATTATGGCATGTATATTTCTCACAACATAATCTTGGTTCATGGATTGATTCATCTCAACTTGAGTTCCAAGATGGAATAGGTGCAACAAAAAGACCTGTTGTATATGCTTCATTGCATGGTCATGCATCATATCCACATGCTGGTCTTGTTCTATTAGGGAAAAATGGAATAGGTGCAATAGATGATACTAATAAAGGAAAGAATGTTATGGATATGGGAAAATTTGTATTGGTTTCTGCAGAGTATTTAAGGTCTGAAGTTAAAGAGCCAGCATGGTTGAATTTTTTTAGGCAATGGGGTCCACATGTGGACTATAGTCTAGATGATGAGTTGAAGAATGTTGAGAAGTTATTGCCTGGGAAGTTAAAAAACGGTTTTGAAGATATTATTAGGGACTTACCAAAAGAAATGTTGGGAGAGGCAGGACCAACAGGTCCAAAGCAAAAGAATAATTGGAGTGGTGATGAAGTTTGA

Protein sequence

>Msa0327670

MGVNVNVRILCVCVVLFMAIEAMGVHQTAPMDQFSENKNIFKKKRPRSRSRPIDYAFKLPIAQTSWPKGNGFAGGFLDLGGLQVYQASTFSKVWGAYEGGPDNQGASVYEPTGIPKGFSMLGSYSQPNNKPLFGYVFVAKDVSSSTTGRTLKPPVDYTLVSNTAFFKATQDSTLFIWLPIAPNGYKALGHVVTTTQDKPSFDKIMCVRSDLTDQCESSSWIWGSNSFNFYDVRPINRGTQAPGVRVGTFVAQNGGNTNPPSISCLKNLKSISQIMPNKKQIEAMLQVYSPFLYLHSDEEYLPSSVNWFFSNGALLYKKGQESNPVPIAQNGTNLPQDPNTDGSYWLDLPADNANKERVKKGNLQSAESYVHVKPMYGGTFTDIAMWIFYPFNGPGRAKVEFINVKLGKIGEHVGDWEHVTLRVSNLDGQLWHVYFSQHNLGSWIDSSQLEFQDGIGATKRPVVYASLHGHASYPHAGLVLLGKNGIGAIDDTNKGKNVMDMGKFVLVSAEYLRSEVKEPAWLNFFRQWGPHVDYSLDDELKNVEKLLPGKLKNGFEDIIRDLPKEMLGEAGPTGPKQKNNWSGDEV*