AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0327670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0327670 MtrunA17_Chr2g0309181 96.246 586 22 0 1 586 1 586 0.0 1172
Msa0327670 MtrunA17_Chr2g0309171 76.329 621 110 3 3 586 532 1152 0.0 952
Msa0327670 MtrunA17_Chr2g0309171 81.081 518 93 2 69 582 14 530 0.0 878
Msa0327670 MtrunA17_Chr2g0309191 77.555 548 116 2 39 586 13 553 0.0 894
Msa0327670 MtrunA17_Chr4g0074491 75.824 546 126 2 47 586 2 547 0.0 847
Msa0327670 MtrunA17_Chr2g0310081 57.636 550 205 8 47 586 48 579 0.0 633
Msa0327670 MtrunA17_Chr2g0309131 49.636 550 192 10 47 585 10 485 3.86e-174 502
Msa0327670 MtrunA17_Chr1g0190341 44.203 552 281 10 50 585 18 558 1.29e-162 475
Msa0327670 MtrunA17_Chr1g0190371 44.203 552 281 10 50 585 18 558 1.29e-162 475
Msa0327670 MtrunA17_Chr5g0395701 42.167 600 313 12 12 585 14 605 5.65e-158 465
Msa0327670 MtrunA17_Chr4g0039581 44.065 556 282 12 50 585 21 567 4.79e-154 454
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0327670 AT2G44260.1 57.615 545 220 6 43 585 17 552 0.0 651
Msa0327670 AT2G44260.2 58.767 519 205 5 69 585 71 582 0.0 637
Msa0327670 AT2G44230.1 54.529 541 231 6 50 586 13 542 0.0 606
Msa0327670 AT3G01870.1 46.801 594 280 12 8 585 10 583 0.0 527
Msa0327670 AT3G01880.1 47.834 554 270 8 41 585 46 589 7.21e-175 508
Msa0327670 AT5G18490.1 44.190 568 287 10 31 586 3 552 1.34e-161 473
Msa0327670 AT3G04350.1 41.463 574 305 10 32 586 5 566 1.46e-153 453
Msa0327670 AT5G43950.1 42.857 546 292 9 56 585 23 564 5.13e-150 444
Msa0327670 AT3G04350.2 42.272 537 283 9 69 586 16 544 1.13e-148 439
Msa0327670 AT1G04090.1 42.162 555 289 13 56 585 23 570 3.27e-146 434

Find 165 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAGTGGTGCTATTGTTTC+AGG 0.070780 2_4:-39587902 Msa0327670:three_prime_UTR
CATGCTGGTCTTGTTCTATT+AGG 0.152923 2_4:-39588271 Msa0327670:CDS
AAGATTCCACTCTGTTTATT+TGG 0.160989 2_4:-39589185 Msa0327670:CDS
TGGTTTCTGCAGAGTATTTA+AGG 0.183128 2_4:-39588177 Msa0327670:CDS
GCTCTCCCAGGTCCATTAAA+AGG 0.194798 2_4:+39588526 None:intergenic
GAAAGAAAGGATTATTAAAA+TGG 0.209362 2_4:-39591780 Msa0327670:exon
ACTTACCTTCCTCGGTTAAT+TGG 0.215430 2_4:-39588795 Msa0327670:CDS
TACAAAACCTTATCATTTCT+TGG 0.220794 2_4:-39587806 Msa0327670:three_prime_UTR
AACCACATTTATATATTTAT+AGG 0.223909 2_4:-39591950 Msa0327670:five_prime_UTR
TTTCCTAAATGGGTTGTTAA+AGG 0.227744 2_4:+39587700 None:intergenic
CATCAACTTTCAGCAAAGTT+TGG 0.230782 2_4:-39589434 Msa0327670:CDS
TTCCAATTGCACAAACTTCT+TGG 0.232459 2_4:-39589612 Msa0327670:CDS
GTCCAAAGCAAAAGAATAAT+TGG 0.237948 2_4:-39587973 Msa0327670:CDS
AGGAAAGAATGTTATGGATA+TGG 0.239424 2_4:-39588212 Msa0327670:CDS
GTGAGTCGTCTTCGTGGATT+TGG 0.245039 2_4:-39589050 Msa0327670:CDS
GCCTCTCCCAACATTTCTTT+TGG 0.256046 2_4:+39588007 None:intergenic
GAGTTCATAAATGTGAAATT+AGG 0.273788 2_4:-39588496 Msa0327670:CDS
GACATTAAGGGTGAGTAATT+TGG 0.283450 2_4:-39588437 Msa0327670:CDS
GGCCCTTTAACAACCCATTT+AGG 0.293956 2_4:-39587703 Msa0327670:three_prime_UTR
TTCTTGGTACACATAAAATA+AGG 0.301377 2_4:-39587790 Msa0327670:three_prime_UTR
ATCAACTTTCAGCAAAGTTT+GGG 0.304915 2_4:-39589433 Msa0327670:CDS
ATGCTGGTCTTGTTCTATTA+GGG 0.306617 2_4:-39588270 Msa0327670:CDS
GAACTTGGAGATATAATTAC+TGG 0.309865 2_4:+39587835 None:intergenic
AATGTGGTTTGTGTTGGATT+TGG 0.316742 2_4:+39591964 None:intergenic
GTAATTTGGATGGTCAATTA+TGG 0.322988 2_4:-39588423 Msa0327670:CDS
ATTGGGAGCATGTGACATTA+AGG 0.331662 2_4:-39588450 Msa0327670:CDS
CACAACATAATCTTGGTTCA+TGG 0.334689 2_4:-39588387 Msa0327670:CDS
TGAGTCGTCTTCGTGGATTT+GGG 0.342143 2_4:-39589049 Msa0327670:CDS
ATGTGGTTTGTGTTGGATTT+GGG 0.347679 2_4:+39591965 None:intergenic
CATACAGGTAACGGGTTTGC+AGG 0.352196 2_4:-39589495 Msa0327670:intron
GGCCAAGAAGTTTGTGCAAT+TGG 0.364646 2_4:+39589610 None:intergenic
TTGTATCCATTAGGTGCTAT+TGG 0.368272 2_4:+39589159 None:intergenic
GGTACCTTCGTTGCACAAAA+TGG 0.369818 2_4:-39588955 Msa0327670:CDS
AATGTGAAATTAGGGAAAAT+AGG 0.372168 2_4:-39588487 Msa0327670:CDS
ACAGAGGCGCCTTGATTGTC+CGG 0.375593 2_4:+39589393 None:intergenic
TTAGTTATATTGATTCTTAG+TGG 0.378442 2_4:-39587917 Msa0327670:three_prime_UTR
TTCCTAAATGGGTTGTTAAA+GGG 0.381160 2_4:+39587701 None:intergenic
GCAATAGATGATACTAATAA+AGG 0.384429 2_4:-39588232 Msa0327670:CDS
GTCGAACACCGCATTCTTCA+AGG 0.387707 2_4:-39589214 Msa0327670:CDS
TATTTCTCACAACATAATCT+TGG 0.390267 2_4:-39588394 Msa0327670:CDS
AGTTCATAAATGTGAAATTA+GGG 0.391337 2_4:-39588495 Msa0327670:CDS
CCTAACATAGAGAATCCTTT+AGG 0.394355 2_4:+39589351 None:intergenic
GCTTGAGTTCCTCTATTGAT+TGG 0.400227 2_4:+39588994 None:intergenic
TCAGAATGTAAGTATAGAAA+TGG 0.405414 2_4:+39588826 None:intergenic
CCTAAAGCTTTGTATCCATT+AGG 0.407577 2_4:+39589150 None:intergenic
ATCTGAGGTTGTGGAAAGAA+AGG 0.408380 2_4:-39591793 Msa0327670:five_prime_UTR
CCTAATGGATACAAAGCTTT+AGG 0.409137 2_4:-39589150 Msa0327670:CDS
CAATAGGAACCATCGGTGTT+AGG 0.411858 2_4:+39588682 None:intergenic
CCTGTTCCAATAGCACAAAA+TGG 0.413050 2_4:-39588724 Msa0327670:CDS
AAAGAGTTGACTCTTTGATA+AGG 0.413636 2_4:-39591835 Msa0327670:five_prime_UTR
CCTAAAGGATTCTCTATGTT+AGG 0.416282 2_4:-39589351 Msa0327670:CDS
CTAACACCGATGGTTCCTAT+TGG 0.417136 2_4:-39588681 Msa0327670:CDS
ATGTGTACCAAGAAATGATA+AGG 0.418225 2_4:+39587799 None:intergenic
TTCTTCAAACATGAAATTGA+TGG 0.419362 2_4:+39588916 None:intergenic
TGGTTACCAATAGCACCTAA+TGG 0.422345 2_4:-39589165 Msa0327670:CDS
TTAGTGGTGCTATTGTTTCA+GGG 0.427236 2_4:-39587901 Msa0327670:three_prime_UTR
CTTGTATAGTAATGCTCCAT+TGG 0.433338 2_4:+39588765 None:intergenic
GGAAAGAATGTTATGGATAT+GGG 0.435541 2_4:-39588211 Msa0327670:CDS
GGATATGGGAAAATTTGTAT+TGG 0.435630 2_4:-39588197 Msa0327670:CDS
TTGGGAGAGGCAGGACCAAC+AGG 0.439713 2_4:-39587995 Msa0327670:CDS
GCACAAACTTCTTGGCCAAA+AGG 0.441933 2_4:-39589604 Msa0327670:intron
GGACTTACCAAAAGAAATGT+TGG 0.449403 2_4:-39588014 Msa0327670:CDS
AAGTTTGAATGCGTAGTCAA+TGG 0.453149 2_4:+39589633 None:intergenic
TAATAAAGGAAAGAATGTTA+TGG 0.453406 2_4:-39588218 Msa0327670:CDS
AATGTTGAGAAGTTATTGCC+TGG 0.454803 2_4:-39588070 Msa0327670:CDS
CATCAAATGACCTTAGCCTT+TGG 0.456955 2_4:-39587724 Msa0327670:three_prime_UTR
CTTGAGTTCCAAGATGGAAT+AGG 0.458285 2_4:-39588349 Msa0327670:CDS
TTGTTGCACCTATTCCATCT+TGG 0.460066 2_4:+39588341 None:intergenic
TATATAAATGTGGTTTGTGT+TGG 0.463363 2_4:+39591958 None:intergenic
AAAGAAAGGATTATTAAAAT+GGG 0.467186 2_4:-39591779 Msa0327670:exon
ACCAATGTGAGTCGTCTTCG+TGG 0.467378 2_4:-39589056 Msa0327670:CDS
TCTTTGTTTGCATTATCAGC+AGG 0.468164 2_4:+39588649 None:intergenic
AGTTTGAATGCGTAGTCAAT+GGG 0.469727 2_4:+39589634 None:intergenic
GACACAAGTGTGTAATCAAC+CGG 0.472296 2_4:+39589234 None:intergenic
GTACCTGAAAATTGATCCAT+TGG 0.472787 2_4:+39591674 None:intergenic
CTCTCCCAGGTCCATTAAAA+GGG 0.473051 2_4:+39588527 None:intergenic
TAGGTGAACATGTTGGTGAT+TGG 0.478019 2_4:-39588468 Msa0327670:CDS
GCCTCTGTGTACGAACCAAC+AGG 0.479134 2_4:-39589378 Msa0327670:CDS
AAAGAGGCTTATTGTTTGGT+TGG 0.482475 2_4:+39589319 None:intergenic
GAGCATTACTATACAAGAAA+GGG 0.482576 2_4:-39588759 Msa0327670:CDS
GGAGCATTACTATACAAGAA+AGG 0.483944 2_4:-39588760 Msa0327670:CDS
AAAGAAATGTTGGGAGAGGC+AGG 0.484817 2_4:-39588004 Msa0327670:CDS
GCAGGCGGATTCCTCGATCT+AGG 0.486584 2_4:-39589477 Msa0327670:CDS
TGCAATGAAGCATATACAAC+AGG 0.488736 2_4:+39588313 None:intergenic
GCTTTAGAGATCTGAGGTTG+TGG 0.494005 2_4:-39591802 Msa0327670:five_prime_UTR
AATTGCGACATACAGGTAAC+GGG 0.497902 2_4:-39589503 Msa0327670:intron
ATGGGGCGAGAGCGGGATCT+AGG 0.501692 2_4:+39589652 None:intergenic
TTTCATGGCAATTGAAGCAA+TGG 0.506800 2_4:-39591714 Msa0327670:CDS
TCTCAACTTGAGTTCCAAGA+TGG 0.510263 2_4:-39588355 Msa0327670:CDS
AGGTGAACATGTTGGTGATT+GGG 0.511142 2_4:-39588467 Msa0327670:CDS
ATAGAAATGGAGAGTAAACT+TGG 0.512111 2_4:+39588839 None:intergenic
AGCAGGTAGGTCAAGCCAAT+AGG 0.513437 2_4:+39588666 None:intergenic
GGGCGCGTACGAGGGTGGCC+CGG 0.513611 2_4:-39589412 Msa0327670:CDS
GACTTACCAAAAGAAATGTT+GGG 0.516698 2_4:-39588013 Msa0327670:CDS
AGTTCATCAAACTGCACCAA+TGG 0.519996 2_4:-39591690 Msa0327670:CDS
GTAGTCAATGGGGCGAGAGC+GGG 0.524182 2_4:+39589645 None:intergenic
TTCATGGCAATTGAAGCAAT+GGG 0.525631 2_4:-39591713 Msa0327670:CDS
ATATATTTATAGGACAAAGC+TGG 0.527493 2_4:-39591940 Msa0327670:five_prime_UTR
GAGGGTGGCCCGGACAATCA+AGG 0.531572 2_4:-39589402 Msa0327670:CDS
CAAAGTTTGGGGCGCGTACG+AGG 0.533368 2_4:-39589421 Msa0327670:CDS
TAGTGGTGCTATTGTTTCAG+GGG 0.534926 2_4:-39587900 Msa0327670:three_prime_UTR
GTTGTATATGCTTCATTGCA+TGG 0.535907 2_4:-39588310 Msa0327670:CDS
TTCAAACATGAAATTGATGG+AGG 0.536359 2_4:+39588919 None:intergenic
GTGAATGTTCCTCCATACAT+TGG 0.538131 2_4:+39588574 None:intergenic
TGAAGAATACTTACCTTCCT+CGG 0.539422 2_4:-39588803 Msa0327670:CDS
AAATGGAACTAACCTTCCTC+AGG 0.545452 2_4:-39588707 Msa0327670:CDS
AATAGAGGAACTCAAGCTCC+TGG 0.546176 2_4:-39588988 Msa0327670:CDS
GTACATGTGAAACCAATGTA+TGG 0.546199 2_4:-39588586 Msa0327670:CDS
GTTTGGGGCGCGTACGAGGG+TGG 0.552139 2_4:-39589417 Msa0327670:CDS
GTCCTATAAATATATAAATG+TGG 0.553081 2_4:+39591948 None:intergenic
ACAAAGCTGGCTGAGTATTG+AGG 0.553661 2_4:-39591927 Msa0327670:five_prime_UTR
AGATCCACTCACTCACTCAC+TGG 0.555637 2_4:+39591990 None:intergenic
TGTTAAAGGGCCAAAGGCTA+AGG 0.556702 2_4:+39587714 None:intergenic
GATGTTTCTTCAAGTACCAC+AGG 0.559865 2_4:-39589273 Msa0327670:CDS
CGTAGTCAATGGGGCGAGAG+CGG 0.561272 2_4:+39589644 None:intergenic
CTTGTGTTGTGGTGACAACA+TGG 0.561956 2_4:+39589127 None:intergenic
ATGTTGAGAAGTTATTGCCT+GGG 0.567615 2_4:-39588069 Msa0327670:CDS
CAGAGGCGCCTTGATTGTCC+GGG 0.570660 2_4:+39589394 None:intergenic
AACAAAGAGAGAGTCAAGAA+AGG 0.571578 2_4:-39588634 Msa0327670:CDS
CATGCATCATATCCACATGC+TGG 0.576959 2_4:-39588286 Msa0327670:CDS
AGGTAGAACTTTAAAACCAC+CGG 0.578668 2_4:-39589253 Msa0327670:CDS
ACCAAAAGAAATGTTGGGAG+AGG 0.580206 2_4:-39588008 Msa0327670:CDS
GTCAAGCCAATAGGAACCAT+CGG 0.580701 2_4:+39588675 None:intergenic
TAGGCAATGGGGTCCACATG+TGG 0.584937 2_4:-39588119 Msa0327670:CDS
ACCTTCGTTGCACAAAATGG+TGG 0.586771 2_4:-39588952 Msa0327670:CDS
TCAAACATGAAATTGATGGA+GGG 0.588797 2_4:+39588920 None:intergenic
CATTCACTGATATTGCTATG+TGG 0.588887 2_4:-39588558 Msa0327670:CDS
GGCGGATTCCTCGATCTAGG+TGG 0.589492 2_4:-39589474 Msa0327670:CDS
AATCCTTTAGGTATTCCTGT+TGG 0.590174 2_4:+39589363 None:intergenic
GAACCAACAGGAATACCTAA+AGG 0.591524 2_4:-39589366 Msa0327670:CDS
CTGAAGTTAAAGAGCCAGCA+TGG 0.591737 2_4:-39588153 Msa0327670:CDS
AAGGTACCGACTCGAACACC+AGG 0.592465 2_4:+39588970 None:intergenic
GTTTGAGCTTTAGAGATCTG+AGG 0.593969 2_4:-39591808 Msa0327670:five_prime_UTR
CGGTGTTAGGATCCTGAGGA+AGG 0.595347 2_4:+39588695 None:intergenic
GGGAAAATAGGTGAACATGT+TGG 0.598707 2_4:-39588475 Msa0327670:CDS
TGTTTGCATTATCAGCAGGT+AGG 0.599393 2_4:+39588653 None:intergenic
TCCACGAAGACGACTCACAT+TGG 0.601235 2_4:+39589055 None:intergenic
GCGGATTCCTCGATCTAGGT+GGG 0.601507 2_4:-39589473 Msa0327670:CDS
AAAGTTTGGGGCGCGTACGA+GGG 0.602237 2_4:-39589420 Msa0327670:CDS
GATGTTAGACCAATCAATAG+AGG 0.612200 2_4:-39589003 Msa0327670:CDS
AAGCACATAGTTGTTAGTGG+TGG 0.615076 2_4:+39591896 None:intergenic
ATGGGTTGTTAAAGGGCCAA+AGG 0.616992 2_4:+39587708 None:intergenic
GAGTCGTCTTCGTGGATTTG+GGG 0.618172 2_4:-39589048 Msa0327670:CDS
TTGGGAGCATGTGACATTAA+GGG 0.618313 2_4:-39588449 Msa0327670:CDS
AGAGCCAGTGAGTGAGTGAG+TGG 0.620847 2_4:-39591994 None:intergenic
TCAACTTTCAGCAAAGTTTG+GGG 0.622783 2_4:-39589432 Msa0327670:CDS
CCTTCGTTGCACAAAATGGT+GGG 0.623036 2_4:-39588951 Msa0327670:CDS
CCTCAGGATCCTAACACCGA+TGG 0.625114 2_4:-39588691 Msa0327670:CDS
CAAGCTCCTGGTGTTCGAGT+CGG 0.632690 2_4:-39588976 Msa0327670:CDS
GGAAGGTTTATCTTGTGTTG+TGG 0.635479 2_4:+39589116 None:intergenic
CCATCGGTGTTAGGATCCTG+AGG 0.638972 2_4:+39588691 None:intergenic
AAGCAAAAGAATAATTGGAG+TGG 0.643244 2_4:-39587968 Msa0327670:CDS
ACAGGTAACGGGTTTGCAGG+CGG 0.645435 2_4:-39589492 Msa0327670:intron
TTAAGGGTGAGTAATTTGGA+TGG 0.647264 2_4:-39588433 Msa0327670:CDS
TCCTGTTGGTTCGTACACAG+AGG 0.657319 2_4:+39589377 None:intergenic
TCTAGACTATAGTCCACATG+TGG 0.667547 2_4:+39588106 None:intergenic
CTTGCAGCCCACCTAGATCG+AGG 0.671094 2_4:+39589466 None:intergenic
TGGTAACCAAATAAACAGAG+TGG 0.676944 2_4:+39589179 None:intergenic
AATAGAACAAGACCAGCATG+TGG 0.676999 2_4:+39588274 None:intergenic
ACGACTCACATTGGTCTGTG+AGG 0.680953 2_4:+39589064 None:intergenic
TGGGTGTTAATGTGAATGTG+AGG 0.689485 2_4:-39591760 Msa0327670:CDS
GTTTGAATGCGTAGTCAATG+GGG 0.693078 2_4:+39589635 None:intergenic
TTGAGTAGCCTTGAAGAATG+CGG 0.694669 2_4:+39589206 None:intergenic
ACAAGTGTGTAATCAACCGG+TGG 0.714678 2_4:+39589237 None:intergenic
CATGTGAAACCAATGTATGG+AGG 0.726903 2_4:-39588583 Msa0327670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAATATAAAATAT+GGG - chr2_4:39588143-39588162 Msa0327670:CDS 0.0%
!!! ATAAGTAAATTTTTTTTTGT+AGG + chr2_4:39588815-39588834 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + chr2_4:39588876-39588895 None:intergenic 10.0%
!!! ATTATTCACAATTTTTTAAA+AGG - chr2_4:39589421-39589440 Msa0327670:CDS 10.0%
!! CTATAAATTAGAAAAATTAA+GGG + chr2_4:39589490-39589509 None:intergenic 10.0%
!! ACTATAAATTAGAAAAATTA+AGG + chr2_4:39589491-39589510 None:intergenic 10.0%
!! CTATAAATTAGAAAAATTAA+GGG + chr2_4:39589490-39589509 None:intergenic 10.0%
!! ACTATAAATTAGAAAAATTA+AGG + chr2_4:39589491-39589510 None:intergenic 10.0%
!! ACCAAAAAAAAAAAAATTAA+GGG + chr2_4:39589660-39589679 None:intergenic 10.0%
!! AACCAAAAAAAAAAAAATTA+AGG + chr2_4:39589661-39589680 None:intergenic 10.0%
!! AACCACATTTATATATTTAT+AGG - chr2_4:39587688-39587707 Msa0327670:three_prime_UTR 15.0%
!! AAAGAAAGGATTATTAAAAT+GGG - chr2_4:39587859-39587878 Msa0327670:three_prime_UTR 15.0%
!! AAATAAAGATAAAGTAACAA+TGG + chr2_4:39588002-39588021 None:intergenic 15.0%
!! ATCTAACATTAATAAAACAA+TGG + chr2_4:39588443-39588462 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr2_4:39589197-39589216 None:intergenic 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + chr2_4:39588847-39588866 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + chr2_4:39588848-39588867 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG - chr2_4:39589006-39589025 Msa0327670:CDS 15.0%
!!! AATTTTTGCGATATTTTTTT+CGG - chr2_4:39589041-39589060 Msa0327670:CDS 15.0%
!!! ATTTTACAACAATTTTTTAC+AGG + chr2_4:39589095-39589114 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr2_4:39589125-39589144 Msa0327670:CDS 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr2_4:39589197-39589216 Msa0327670:CDS 15.0%
!!! TCCCTTAATTTTTTTTTTTT+TGG - chr2_4:39589656-39589675 Msa0327670:CDS 15.0%
!!! ATATATCAAGTTATTTTGTA+TGG + chr2_4:39589747-39589766 None:intergenic 15.0%
!! GTCCTATAAATATATAAATG+TGG + chr2_4:39587693-39587712 None:intergenic 20.0%
!! GAAAGAAAGGATTATTAAAA+TGG - chr2_4:39587858-39587877 Msa0327670:three_prime_UTR 20.0%
!! AATCATGTTGTATCTAATTA+GGG - chr2_4:39588585-39588604 Msa0327670:CDS 20.0%
!!! TCAAACTTACTTTTTATACT+TGG - chr2_4:39588664-39588683 Msa0327670:CDS 20.0%
!!! TTTAGGGTTAATTATGTTTT+TGG - chr2_4:39588727-39588746 Msa0327670:CDS 20.0%
!! GTGTTAAGAATGTTATTAAA+AGG + chr2_4:39589071-39589090 None:intergenic 20.0%
!!! TTAAGGGTTAATTATGTTTT+TGG + chr2_4:39589255-39589274 None:intergenic 20.0%
!! AGTTCATAAATGTGAAATTA+GGG - chr2_4:39591143-39591162 Msa0327670:intron 20.0%
!! TAATAAAGGAAAGAATGTTA+TGG - chr2_4:39591420-39591439 Msa0327670:intron 20.0%
!!! TTAGTTATATTGATTCTTAG+TGG - chr2_4:39591721-39591740 Msa0327670:CDS 20.0%
!! TATATAAATGTGGTTTGTGT+TGG + chr2_4:39587683-39587702 None:intergenic 25.0%
! ATATATTTATAGGACAAAGC+TGG - chr2_4:39587698-39587717 Msa0327670:three_prime_UTR 25.0%
! AACAAAACAAGAACAAAACA+CGG + chr2_4:39588081-39588100 None:intergenic 25.0%
!!! TATATACCTTTTGAAGTGTT+TGG - chr2_4:39588173-39588192 Msa0327670:CDS 25.0%
!!! ATATACCTTTTGAAGTGTTT+GGG - chr2_4:39588174-39588193 Msa0327670:CDS 25.0%
!! AGATAAGTTTTTGAACGAAA+CGG - chr2_4:39588250-39588269 Msa0327670:CDS 25.0%
! AAAAGTTAATGAAGTACATG+TGG - chr2_4:39588417-39588436 Msa0327670:CDS 25.0%
!!! TTTTTAACTTGGATCAAGAT+CGG + chr2_4:39588510-39588529 None:intergenic 25.0%
! CAATCATGTTGTATCTAATT+AGG - chr2_4:39588584-39588603 Msa0327670:CDS 25.0%
! ATCATGTTGTATCTAATTAG+GGG - chr2_4:39588586-39588605 Msa0327670:CDS 25.0%
! TTTGATGCCTTAAAACAATA+GGG + chr2_4:39588649-39588668 None:intergenic 25.0%
!! AACTCGCTTTGATTAATTTT+AGG - chr2_4:39588710-39588729 Msa0327670:CDS 25.0%
!! ACTCGCTTTGATTAATTTTA+GGG - chr2_4:39588711-39588730 Msa0327670:CDS 25.0%
! AAGTAAGGAATAAACTTACA+AGG + chr2_4:39588770-39588789 None:intergenic 25.0%
!! CAAGTTTAAAACACTATGAA+AGG - chr2_4:39588910-39588929 Msa0327670:CDS 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr2_4:39589136-39589155 Msa0327670:CDS 25.0%
! TATCTAACAATGAAAATTGC+TGG + chr2_4:39589400-39589419 None:intergenic 25.0%
! TTCTCTACAAACAAAAACAT+GGG + chr2_4:39589941-39589960 None:intergenic 25.0%
! ATTCTCTACAAACAAAAACA+TGG + chr2_4:39589942-39589961 None:intergenic 25.0%
! AGAAAATGAGAATCACATAA+TGG + chr2_4:39590063-39590082 None:intergenic 25.0%
! ACAAAAACATATCCAAAAAG+AGG + chr2_4:39590338-39590357 None:intergenic 25.0%
! TTCTTCAAACATGAAATTGA+TGG + chr2_4:39590725-39590744 None:intergenic 25.0%
! TCAGAATGTAAGTATAGAAA+TGG + chr2_4:39590815-39590834 None:intergenic 25.0%
! GAGTTCATAAATGTGAAATT+AGG - chr2_4:39591142-39591161 Msa0327670:intron 25.0%
! AATGTGAAATTAGGGAAAAT+AGG - chr2_4:39591151-39591170 Msa0327670:intron 25.0%
! TATTTCTCACAACATAATCT+TGG - chr2_4:39591244-39591263 Msa0327670:intron 25.0%
! GCAATAGATGATACTAATAA+AGG - chr2_4:39591406-39591425 Msa0327670:intron 25.0%
!!! GTTGAATTTTTTTAGGCAAT+GGG - chr2_4:39591507-39591526 Msa0327670:intron 25.0%
!!! TTGAATTTTTTTAGGCAATG+GGG - chr2_4:39591508-39591527 Msa0327670:intron 25.0%
!!! ACGGTTTTGAAGATATTATT+AGG - chr2_4:39591602-39591621 Msa0327670:intron 25.0%
!!! CGGTTTTGAAGATATTATTA+GGG - chr2_4:39591603-39591622 Msa0327670:intron 25.0%
! TACAAAACCTTATCATTTCT+TGG - chr2_4:39591832-39591851 Msa0327670:five_prime_UTR 25.0%
! TTCTTGGTACACATAAAATA+AGG - chr2_4:39591848-39591867 Msa0327670:five_prime_UTR 25.0%
!! TTTCCATGTTTTTCCTAAAT+GGG + chr2_4:39591951-39591970 None:intergenic 25.0%
! AAAAAGCACATAGTTGTTAG+TGG + chr2_4:39587748-39587767 None:intergenic 30.0%
! AAAGAGTTGACTCTTTGATA+AGG - chr2_4:39587803-39587822 Msa0327670:three_prime_UTR 30.0%
!! GGTTTGCTTAATGATTTTCT+TGG - chr2_4:39588049-39588068 Msa0327670:CDS 30.0%
TTGTGTTCACATGTAGATAT+GGG - chr2_4:39588099-39588118 Msa0327670:CDS 30.0%
CAGTGATGTAGATAAATAGT+TGG - chr2_4:39588226-39588245 Msa0327670:CDS 30.0%
GTTTGATGCCTTAAAACAAT+AGG + chr2_4:39588650-39588669 None:intergenic 30.0%
!! TACTTTTTATACTTGGTCGT+TGG - chr2_4:39588671-39588690 Msa0327670:CDS 30.0%
! TACAAGGTCGCAATTTTATA+GGG + chr2_4:39588754-39588773 None:intergenic 30.0%
! TTACAAGGTCGCAATTTTAT+AGG + chr2_4:39588755-39588774 None:intergenic 30.0%
!!! TTTTGCGATATTTTTTTCGG+AGG - chr2_4:39589044-39589063 Msa0327670:CDS 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG - chr2_4:39589167-39589186 Msa0327670:CDS 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG - chr2_4:39589168-39589187 Msa0327670:CDS 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr2_4:39589212-39589231 Msa0327670:CDS 30.0%
!! GAAAATTGCTGGAGTATTTT+TGG + chr2_4:39589389-39589408 None:intergenic 30.0%
TGTTTGTTTATGAAAAACCG+TGG - chr2_4:39589720-39589739 Msa0327670:intron 30.0%
!! AAGTTATTTTGTATGGACCA+CGG + chr2_4:39589740-39589759 None:intergenic 30.0%
GGGAAAATCTTGTAGAATAA+AGG + chr2_4:39589831-39589850 None:intergenic 30.0%
ACAATGTGTTAATGATCTTG+CGG + chr2_4:39589906-39589925 None:intergenic 30.0%
!!! ATCACATAATGGATACCTTT+TGG + chr2_4:39590052-39590071 None:intergenic 30.0%
TCACTACTAGAATGTATAAG+AGG + chr2_4:39590088-39590107 None:intergenic 30.0%
ATGCTAATTATACCAAGTGT+TGG - chr2_4:39590112-39590131 Msa0327670:intron 30.0%
ATCAACTTTCAGCAAAGTTT+GGG - chr2_4:39590205-39590224 Msa0327670:intron 30.0%
!! TGGATATGTTTTTGTAGCAA+AGG - chr2_4:39590343-39590362 Msa0327670:intron 30.0%
AAGATTCCACTCTGTTTATT+TGG - chr2_4:39590453-39590472 Msa0327670:intron 30.0%
! CACATGATTTTATCAAAGGA+AGG + chr2_4:39590542-39590561 None:intergenic 30.0%
! GACACACATGATTTTATCAA+AGG + chr2_4:39590546-39590565 None:intergenic 30.0%
TCAAACATGAAATTGATGGA+GGG + chr2_4:39590721-39590740 None:intergenic 30.0%
TTCAAACATGAAATTGATGG+AGG + chr2_4:39590722-39590741 None:intergenic 30.0%
GCCTAATAAAAAACAAATCG+AGG - chr2_4:39590769-39590788 Msa0327670:intron 30.0%
!!! GCCTCGATTTGTTTTTTATT+AGG + chr2_4:39590773-39590792 None:intergenic 30.0%
ATAGAAATGGAGAGTAAACT+TGG + chr2_4:39590802-39590821 None:intergenic 30.0%
!!! GTTAATTGGTTTTTCTCCAA+TGG - chr2_4:39590857-39590876 Msa0327670:intron 30.0%
GAGCATTACTATACAAGAAA+GGG - chr2_4:39590879-39590898 Msa0327670:intron 30.0%
! TTAGTTCCATTTTGTGCTAT+TGG + chr2_4:39590923-39590942 None:intergenic 30.0%
! TGGATTTTCTACCCTTTTAA+TGG - chr2_4:39591100-39591119 Msa0327670:intron 30.0%
GTAATTTGGATGGTCAATTA+TGG - chr2_4:39591215-39591234 Msa0327670:intron 30.0%
CTTGTTCTATTAGGGAAAAA+TGG - chr2_4:39591376-39591395 Msa0327670:intron 30.0%
CTATTAGGGAAAAATGGAAT+AGG - chr2_4:39591382-39591401 Msa0327670:intron 30.0%
AGGAAAGAATGTTATGGATA+TGG - chr2_4:39591426-39591445 Msa0327670:intron 30.0%
GGAAAGAATGTTATGGATAT+GGG - chr2_4:39591427-39591446 Msa0327670:intron 30.0%
GGATATGGGAAAATTTGTAT+TGG - chr2_4:39591441-39591460 Msa0327670:intron 30.0%
CTAAAAAAATTCAACCATGC+TGG + chr2_4:39591502-39591521 None:intergenic 30.0%
!!! CAGCATGGTTGAATTTTTTT+AGG - chr2_4:39591500-39591519 Msa0327670:intron 30.0%
!!! GGTTGAATTTTTTTAGGCAA+TGG - chr2_4:39591506-39591525 Msa0327670:intron 30.0%
GACTTACCAAAAGAAATGTT+GGG - chr2_4:39591625-39591644 Msa0327670:intron 30.0%
GTCCAAAGCAAAAGAATAAT+TGG - chr2_4:39591665-39591684 Msa0327670:intron 30.0%
! CTCCAATTATTCTTTTGCTT+TGG + chr2_4:39591670-39591689 None:intergenic 30.0%
AAGCAAAAGAATAATTGGAG+TGG - chr2_4:39591670-39591689 Msa0327670:intron 30.0%
GAACTTGGAGATATAATTAC+TGG + chr2_4:39591806-39591825 None:intergenic 30.0%
ATGTGTACCAAGAAATGATA+AGG + chr2_4:39591842-39591861 None:intergenic 30.0%
!! TTCCTAAATGGGTTGTTAAA+GGG + chr2_4:39591940-39591959 None:intergenic 30.0%
!! TTTCCTAAATGGGTTGTTAA+AGG + chr2_4:39591941-39591960 None:intergenic 30.0%
! GTTTCCATGTTTTTCCTAAA+TGG + chr2_4:39591952-39591971 None:intergenic 30.0%
! ATGTGGTTTGTGTTGGATTT+GGG + chr2_4:39587676-39587695 None:intergenic 35.0%
! AATGTGGTTTGTGTTGGATT+TGG + chr2_4:39587677-39587696 None:intergenic 35.0%
! TGTTTGTGTTGTGCTTTTCA+TGG - chr2_4:39587909-39587928 Msa0327670:three_prime_UTR 35.0%
TTTCATGGCAATTGAAGCAA+TGG - chr2_4:39587924-39587943 Msa0327670:three_prime_UTR 35.0%
TTCATGGCAATTGAAGCAAT+GGG - chr2_4:39587925-39587944 Msa0327670:three_prime_UTR 35.0%
GTACCTGAAAATTGATCCAT+TGG + chr2_4:39587967-39587986 None:intergenic 35.0%
GTTGTGTTCACATGTAGATA+TGG - chr2_4:39588098-39588117 Msa0327670:CDS 35.0%
TGTGTTCACATGTAGATATG+GGG - chr2_4:39588100-39588119 Msa0327670:CDS 35.0%
AGATATGGGGATAAGAACAT+TGG - chr2_4:39588113-39588132 Msa0327670:CDS 35.0%
GATATGGGGATAAGAACATT+GGG - chr2_4:39588114-39588133 Msa0327670:CDS 35.0%
TTTCACCCAAACACTTCAAA+AGG + chr2_4:39588182-39588201 None:intergenic 35.0%
! TAAGTTTTTGAACGAAACGG+TGG - chr2_4:39588253-39588272 Msa0327670:CDS 35.0%
GTCACACGAGTAAATTTGTA+AGG - chr2_4:39588329-39588348 Msa0327670:CDS 35.0%
!! AACGGTGCAGATTTTTAACT+TGG + chr2_4:39588521-39588540 None:intergenic 35.0%
CTGATCTGATCTAGATCAAA+CGG + chr2_4:39588539-39588558 None:intergenic 35.0%
TTGCATGCATTCAGTTCATT+TGG + chr2_4:39588567-39588586 None:intergenic 35.0%
ATGTTGTATCTAATTAGGGG+TGG - chr2_4:39588589-39588608 Msa0327670:CDS 35.0%
CCTTAAAACAATAGGGTCAT+GGG + chr2_4:39588642-39588661 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - chr2_4:39589227-39589246 Msa0327670:CDS 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - chr2_4:39589228-39589247 Msa0327670:CDS 35.0%
!!! TTTTTGGTTAAGTAGCCTAG+TGG - chr2_4:39589542-39589561 Msa0327670:intron 35.0%
!!! TTTTTGGTTAAGTAGCCTAG+TGG - chr2_4:39589542-39589561 Msa0327670:intron 35.0%
CTGCACTATTATGAACAGAA+GGG + chr2_4:39589851-39589870 None:intergenic 35.0%
AGTTTGAATGCGTAGTCAAT+GGG + chr2_4:39590007-39590026 None:intergenic 35.0%
AAGTTTGAATGCGTAGTCAA+TGG + chr2_4:39590008-39590027 None:intergenic 35.0%
TTCCAATTGCACAAACTTCT+TGG - chr2_4:39590026-39590045 Msa0327670:intron 35.0%
CATCAACTTTCAGCAAAGTT+TGG - chr2_4:39590204-39590223 Msa0327670:intron 35.0%
TCAACTTTCAGCAAAGTTTG+GGG - chr2_4:39590206-39590225 Msa0327670:intron 35.0%
AATCCTTTAGGTATTCCTGT+TGG + chr2_4:39590278-39590297 None:intergenic 35.0%
CCTAACATAGAGAATCCTTT+AGG + chr2_4:39590290-39590309 None:intergenic 35.0%
CCTAAAGGATTCTCTATGTT+AGG - chr2_4:39590287-39590306 Msa0327670:intron 35.0%
AAAGAGGCTTATTGTTTGGT+TGG + chr2_4:39590322-39590341 None:intergenic 35.0%
CCAAAAAGAGGCTTATTGTT+TGG + chr2_4:39590326-39590345 None:intergenic 35.0%
! CCAAACAATAAGCCTCTTTT+TGG - chr2_4:39590323-39590342 Msa0327670:intron 35.0%
!!! TGGTTTTAAAGTTCTACCTG+TGG + chr2_4:39590384-39590403 None:intergenic 35.0%
!! AGGTAGAACTTTAAAACCAC+CGG - chr2_4:39590385-39590404 Msa0327670:intron 35.0%
TGGTAACCAAATAAACAGAG+TGG + chr2_4:39590462-39590481 None:intergenic 35.0%
! TTGTATCCATTAGGTGCTAT+TGG + chr2_4:39590482-39590501 None:intergenic 35.0%
! CCTAAAGCTTTGTATCCATT+AGG + chr2_4:39590491-39590510 None:intergenic 35.0%
! CCTAATGGATACAAAGCTTT+AGG - chr2_4:39590488-39590507 Msa0327670:intron 35.0%
GATGTTAGACCAATCAATAG+AGG - chr2_4:39590635-39590654 Msa0327670:intron 35.0%
TGAAGAATACTTACCTTCCT+CGG - chr2_4:39590835-39590854 Msa0327670:intron 35.0%
AAAAACCAATTAACCGAGGA+AGG + chr2_4:39590851-39590870 None:intergenic 35.0%
CTTGTATAGTAATGCTCCAT+TGG + chr2_4:39590876-39590895 None:intergenic 35.0%
! GGAGCATTACTATACAAGAA+AGG - chr2_4:39590878-39590897 Msa0327670:intron 35.0%
! TCTTTGTTTGCATTATCAGC+AGG + chr2_4:39590992-39591011 None:intergenic 35.0%
AACAAAGAGAGAGTCAAGAA+AGG - chr2_4:39591004-39591023 Msa0327670:intron 35.0%
GTACATGTGAAACCAATGTA+TGG - chr2_4:39591052-39591071 Msa0327670:intron 35.0%
CATTCACTGATATTGCTATG+TGG - chr2_4:39591080-39591099 Msa0327670:intron 35.0%
GACATTAAGGGTGAGTAATT+TGG - chr2_4:39591201-39591220 Msa0327670:intron 35.0%
TTAAGGGTGAGTAATTTGGA+TGG - chr2_4:39591205-39591224 Msa0327670:intron 35.0%
CACAACATAATCTTGGTTCA+TGG - chr2_4:39591251-39591270 Msa0327670:intron 35.0%
TGCAATGAAGCATATACAAC+AGG + chr2_4:39591328-39591347 None:intergenic 35.0%
GTTGTATATGCTTCATTGCA+TGG - chr2_4:39591328-39591347 Msa0327670:intron 35.0%
!! ATGCTGGTCTTGTTCTATTA+GGG - chr2_4:39591368-39591387 Msa0327670:intron 35.0%
! TGGTTTCTGCAGAGTATTTA+AGG - chr2_4:39591461-39591480 Msa0327670:intron 35.0%
AATGTTGAGAAGTTATTGCC+TGG - chr2_4:39591568-39591587 Msa0327670:intron 35.0%
ATGTTGAGAAGTTATTGCCT+GGG - chr2_4:39591569-39591588 Msa0327670:intron 35.0%
TTGCCTGGGAAGTTAAAAAA+CGG - chr2_4:39591583-39591602 Msa0327670:intron 35.0%
!!! AAACCGTTTTTTAACTTCCC+AGG + chr2_4:39591589-39591608 None:intergenic 35.0%
GGACTTACCAAAAGAAATGT+TGG - chr2_4:39591624-39591643 Msa0327670:intron 35.0%
!! TTAGTGGTGCTATTGTTTCA+GGG - chr2_4:39591737-39591756 Msa0327670:CDS 35.0%
!! GGTTTTGTACTACAAGAACT+TGG + chr2_4:39591821-39591840 None:intergenic 35.0%
CAACCCATTTAGGAAAAACA+TGG - chr2_4:39591945-39591964 Msa0327670:five_prime_UTR 35.0%
AAGCACATAGTTGTTAGTGG+TGG + chr2_4:39587745-39587764 None:intergenic 40.0%
!! GTTTGAGCTTTAGAGATCTG+AGG - chr2_4:39587830-39587849 Msa0327670:three_prime_UTR 40.0%
! ATCTGAGGTTGTGGAAAGAA+AGG - chr2_4:39587845-39587864 Msa0327670:three_prime_UTR 40.0%
TGGGTGTTAATGTGAATGTG+AGG - chr2_4:39587878-39587897 Msa0327670:three_prime_UTR 40.0%
AGTTCATCAAACTGCACCAA+TGG - chr2_4:39587948-39587967 Msa0327670:exon 40.0%
! GCACCAATGGATCAATTTTC+AGG - chr2_4:39587961-39587980 Msa0327670:CDS 40.0%
! GGTGGTGTATGGATTTTTCT+GGG - chr2_4:39588271-39588290 Msa0327670:CDS 40.0%
!! CCCATGACCCTATTGTTTTA+AGG - chr2_4:39588639-39588658 Msa0327670:CDS 40.0%
GCCTTAAAACAATAGGGTCA+TGG + chr2_4:39588643-39588662 None:intergenic 40.0%
! CATAAAAAGCTCTAGCCACT+AGG + chr2_4:39589690-39589709 None:intergenic 40.0%
GCTGCACTATTATGAACAGA+AGG + chr2_4:39589852-39589871 None:intergenic 40.0%
GTTTGAATGCGTAGTCAATG+GGG + chr2_4:39590006-39590025 None:intergenic 40.0%
TATGTCGCAATTCCAACACT+TGG + chr2_4:39590127-39590146 None:intergenic 40.0%
GAATTGCGACATACAGGTAA+CGG - chr2_4:39590134-39590153 Msa0327670:intron 40.0%
AATTGCGACATACAGGTAAC+GGG - chr2_4:39590135-39590154 Msa0327670:intron 40.0%
GAACCAACAGGAATACCTAA+AGG - chr2_4:39590272-39590291 Msa0327670:intron 40.0%
GATGTTTCTTCAAGTACCAC+AGG - chr2_4:39590365-39590384 Msa0327670:intron 40.0%
GACACAAGTGTGTAATCAAC+CGG + chr2_4:39590407-39590426 None:intergenic 40.0%
! TTGAGTAGCCTTGAAGAATG+CGG + chr2_4:39590435-39590454 None:intergenic 40.0%
TGGTTACCAATAGCACCTAA+TGG - chr2_4:39590473-39590492 Msa0327670:intron 40.0%
GGAAGGTTTATCTTGTGTTG+TGG + chr2_4:39590525-39590544 None:intergenic 40.0%
GCTTGAGTTCCTCTATTGAT+TGG + chr2_4:39590647-39590666 None:intergenic 40.0%
ACTTACCTTCCTCGGTTAAT+TGG - chr2_4:39590843-39590862 Msa0327670:intron 40.0%
GGAGAAAAACCAATTAACCG+AGG + chr2_4:39590855-39590874 None:intergenic 40.0%
!! CCATTTTGTGCTATTGGAAC+AGG + chr2_4:39590917-39590936 None:intergenic 40.0%
CCTGTTCCAATAGCACAAAA+TGG - chr2_4:39590914-39590933 Msa0327670:intron 40.0%
AAATGGAACTAACCTTCCTC+AGG - chr2_4:39590931-39590950 Msa0327670:intron 40.0%
TGTTTGCATTATCAGCAGGT+AGG + chr2_4:39590988-39591007 None:intergenic 40.0%
CATGTGAAACCAATGTATGG+AGG - chr2_4:39591055-39591074 Msa0327670:intron 40.0%
GTGAATGTTCCTCCATACAT+TGG + chr2_4:39591067-39591086 None:intergenic 40.0%
!! TTCTACCCTTTTAATGGACC+TGG - chr2_4:39591106-39591125 Msa0327670:intron 40.0%
!! TCTACCCTTTTAATGGACCT+GGG - chr2_4:39591107-39591126 Msa0327670:intron 40.0%
GGGAAAATAGGTGAACATGT+TGG - chr2_4:39591163-39591182 Msa0327670:intron 40.0%
!! TAGGTGAACATGTTGGTGAT+TGG - chr2_4:39591170-39591189 Msa0327670:intron 40.0%
!! AGGTGAACATGTTGGTGATT+GGG - chr2_4:39591171-39591190 Msa0327670:intron 40.0%
! ATTGGGAGCATGTGACATTA+AGG - chr2_4:39591188-39591207 Msa0327670:intron 40.0%
! TTGGGAGCATGTGACATTAA+GGG - chr2_4:39591189-39591208 Msa0327670:intron 40.0%
TCTCAACTTGAGTTCCAAGA+TGG - chr2_4:39591283-39591302 Msa0327670:intron 40.0%
CTTGAGTTCCAAGATGGAAT+AGG - chr2_4:39591289-39591308 Msa0327670:intron 40.0%
TTGTTGCACCTATTCCATCT+TGG + chr2_4:39591300-39591319 None:intergenic 40.0%
AATAGAACAAGACCAGCATG+TGG + chr2_4:39591367-39591386 None:intergenic 40.0%
!! CATGCTGGTCTTGTTCTATT+AGG - chr2_4:39591367-39591386 Msa0327670:intron 40.0%
TCTAGACTATAGTCCACATG+TGG + chr2_4:39591535-39591554 None:intergenic 40.0%
ACCAAAAGAAATGTTGGGAG+AGG - chr2_4:39591630-39591649 Msa0327670:intron 40.0%
!! TTCTTTTGCTTTGGACCTGT+TGG + chr2_4:39591661-39591680 None:intergenic 40.0%
!! CTTAGTGGTGCTATTGTTTC+AGG - chr2_4:39591736-39591755 Msa0327670:CDS 40.0%
!! TAGTGGTGCTATTGTTTCAG+GGG - chr2_4:39591738-39591757 Msa0327670:CDS 40.0%
! CATCAAATGACCTTAGCCTT+TGG - chr2_4:39591914-39591933 Msa0327670:five_prime_UTR 40.0%
! ACAAAGCTGGCTGAGTATTG+AGG - chr2_4:39587711-39587730 Msa0327670:three_prime_UTR 45.0%
!! GCTTTAGAGATCTGAGGTTG+TGG - chr2_4:39587836-39587855 Msa0327670:three_prime_UTR 45.0%
TTGAACGAAACGGTGGTGTA+TGG - chr2_4:39588260-39588279 Msa0327670:CDS 45.0%
! CGGTGGTGTATGGATTTTTC+TGG - chr2_4:39588270-39588289 Msa0327670:CDS 45.0%
GGCCAAGAAGTTTGTGCAAT+TGG + chr2_4:39590031-39590050 None:intergenic 45.0%
GCACAAACTTCTTGGCCAAA+AGG - chr2_4:39590034-39590053 Msa0327670:intron 45.0%
GTGTTGGAATTGCGACATAC+AGG - chr2_4:39590128-39590147 Msa0327670:intron 45.0%
ACAAGTGTGTAATCAACCGG+TGG + chr2_4:39590404-39590423 None:intergenic 45.0%
CTTGTGTTGTGGTGACAACA+TGG + chr2_4:39590514-39590533 None:intergenic 45.0%
TGAGTCGTCTTCGTGGATTT+GGG - chr2_4:39590589-39590608 Msa0327670:intron 45.0%
AATAGAGGAACTCAAGCTCC+TGG - chr2_4:39590650-39590669 Msa0327670:intron 45.0%
GGTACCTTCGTTGCACAAAA+TGG - chr2_4:39590683-39590702 Msa0327670:intron 45.0%
ACCTTCGTTGCACAAAATGG+TGG - chr2_4:39590686-39590705 Msa0327670:intron 45.0%
CCTTCGTTGCACAAAATGGT+GGG - chr2_4:39590687-39590706 Msa0327670:intron 45.0%
! CAATAGGAACCATCGGTGTT+AGG + chr2_4:39590959-39590978 None:intergenic 45.0%
CTAACACCGATGGTTCCTAT+TGG - chr2_4:39590957-39590976 Msa0327670:intron 45.0%
GTCAAGCCAATAGGAACCAT+CGG + chr2_4:39590966-39590985 None:intergenic 45.0%
CTCTCCCAGGTCCATTAAAA+GGG + chr2_4:39591114-39591133 None:intergenic 45.0%
!! AACTCTACTTTTGCTCTCCC+AGG + chr2_4:39591127-39591146 None:intergenic 45.0%
CATGCATCATATCCACATGC+TGG - chr2_4:39591352-39591371 Msa0327670:intron 45.0%
CTGAAGTTAAAGAGCCAGCA+TGG - chr2_4:39591485-39591504 Msa0327670:intron 45.0%
! GCCTCTCCCAACATTTCTTT+TGG + chr2_4:39591634-39591653 None:intergenic 45.0%
AAAGAAATGTTGGGAGAGGC+AGG - chr2_4:39591634-39591653 Msa0327670:intron 45.0%
TGTTAAAGGGCCAAAGGCTA+AGG + chr2_4:39591927-39591946 None:intergenic 45.0%
! ATGGGTTGTTAAAGGGCCAA+AGG + chr2_4:39591933-39591952 None:intergenic 45.0%
GGCCCTTTAACAACCCATTT+AGG - chr2_4:39591935-39591954 Msa0327670:five_prime_UTR 45.0%
!!! TTATTTATTTATTTATCTTT+TGG - chr2_4:39588028-39588047 Msa0327670:CDS 5.0%
!!! CATATTTTATATTTATTTTT+TGG + chr2_4:39588144-39588163 None:intergenic 5.0%
!! CAAAAAATAAATATAAAATA+TGG - chr2_4:39588142-39588161 Msa0327670:CDS 5.0%
!!! AATAGTTTTAATAAAATTAA+GGG + chr2_4:39589271-39589290 None:intergenic 5.0%
!!! AAATAGTTTTAATAAAATTA+AGG + chr2_4:39589272-39589291 None:intergenic 5.0%
!! TAACATTTAAATAATTAAAA+AGG - chr2_4:39589344-39589363 Msa0327670:CDS 5.0%
!! CAAAAAAAAAAAAAAAAAAT+AGG + chr2_4:39589528-39589547 None:intergenic 5.0%
!!! CTATTTTTTTTTTTTTTTTT+TGG - chr2_4:39589526-39589545 Msa0327670:intron 5.0%
! TTGTGTGAGCTCTAGCCACT+AGG + chr2_4:39589560-39589579 None:intergenic 50.0%
!! CATACAGGTAACGGGTTTGC+AGG - chr2_4:39590143-39590162 Msa0327670:intron 50.0%
!! TCCTGTTGGTTCGTACACAG+AGG + chr2_4:39590264-39590283 None:intergenic 50.0%
GTCGAACACCGCATTCTTCA+AGG - chr2_4:39590424-39590443 Msa0327670:intron 50.0%
! ACGACTCACATTGGTCTGTG+AGG + chr2_4:39590577-39590596 None:intergenic 50.0%
ACCAATGTGAGTCGTCTTCG+TGG - chr2_4:39590582-39590601 Msa0327670:intron 50.0%
TCCACGAAGACGACTCACAT+TGG + chr2_4:39590586-39590605 None:intergenic 50.0%
GTGAGTCGTCTTCGTGGATT+TGG - chr2_4:39590588-39590607 Msa0327670:intron 50.0%
GAGTCGTCTTCGTGGATTTG+GGG - chr2_4:39590590-39590609 Msa0327670:intron 50.0%
! CCCACCATTTTGTGCAACGA+AGG + chr2_4:39590690-39590709 None:intergenic 50.0%
AGCAGGTAGGTCAAGCCAAT+AGG + chr2_4:39590975-39590994 None:intergenic 50.0%
GCTCTCCCAGGTCCATTAAA+AGG + chr2_4:39591115-39591134 None:intergenic 50.0%
GGGGTGGTCATGAGTATGAG+CGG - chr2_4:39588605-39588624 Msa0327670:CDS 55.0%
GGGTGGTCATGAGTATGAGC+GGG - chr2_4:39588606-39588625 Msa0327670:CDS 55.0%
GGTGGTCATGAGTATGAGCG+GGG - chr2_4:39588607-39588626 Msa0327670:CDS 55.0%
CATGAGTATGAGCGGGGAGA+TGG - chr2_4:39588613-39588632 Msa0327670:CDS 55.0%
!! ACAGGTAACGGGTTTGCAGG+CGG - chr2_4:39590146-39590165 Msa0327670:intron 55.0%
GCGGATTCCTCGATCTAGGT+GGG - chr2_4:39590165-39590184 Msa0327670:intron 55.0%
! AAAGTTTGGGGCGCGTACGA+GGG - chr2_4:39590218-39590237 Msa0327670:intron 55.0%
!! ACAGAGGCGCCTTGATTGTC+CGG + chr2_4:39590248-39590267 None:intergenic 55.0%
GCCTCTGTGTACGAACCAAC+AGG - chr2_4:39590260-39590279 Msa0327670:intron 55.0%
CAAGCTCCTGGTGTTCGAGT+CGG - chr2_4:39590662-39590681 Msa0327670:intron 55.0%
!! AAGGTACCGACTCGAACACC+AGG + chr2_4:39590671-39590690 None:intergenic 55.0%
! CGGTGTTAGGATCCTGAGGA+AGG + chr2_4:39590946-39590965 None:intergenic 55.0%
!! CCATCGGTGTTAGGATCCTG+AGG + chr2_4:39590950-39590969 None:intergenic 55.0%
CCTCAGGATCCTAACACCGA+TGG - chr2_4:39590947-39590966 Msa0327670:intron 55.0%
TAGGCAATGGGGTCCACATG+TGG - chr2_4:39591519-39591538 Msa0327670:intron 55.0%
GTAGTCAATGGGGCGAGAGC+GGG + chr2_4:39589996-39590015 None:intergenic 60.0%
CGTAGTCAATGGGGCGAGAG+CGG + chr2_4:39589997-39590016 None:intergenic 60.0%
! GCAGGCGGATTCCTCGATCT+AGG - chr2_4:39590161-39590180 Msa0327670:intron 60.0%
! GGCGGATTCCTCGATCTAGG+TGG - chr2_4:39590164-39590183 Msa0327670:intron 60.0%
CTTGCAGCCCACCTAGATCG+AGG + chr2_4:39590175-39590194 None:intergenic 60.0%
! CAAAGTTTGGGGCGCGTACG+AGG - chr2_4:39590217-39590236 Msa0327670:intron 60.0%
!! CAGAGGCGCCTTGATTGTCC+GGG + chr2_4:39590247-39590266 None:intergenic 60.0%
TTGGGAGAGGCAGGACCAAC+AGG - chr2_4:39591643-39591662 Msa0327670:intron 60.0%
ATGGGGCGAGAGCGGGATCT+AGG + chr2_4:39589989-39590008 None:intergenic 65.0%
GAGGGTGGCCCGGACAATCA+AGG - chr2_4:39590236-39590255 Msa0327670:intron 65.0%
! GTTTGGGGCGCGTACGAGGG+TGG - chr2_4:39590221-39590240 Msa0327670:intron 70.0%
! GGGCGCGTACGAGGGTGGCC+CGG - chr2_4:39590226-39590245 Msa0327670:intron 80.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 39587649 39592011 39587649 ID=Msa0327670;Name=Msa0327670
chr2_4 mRNA 39587649 39592011 39587649 ID=Msa0327670-mRNA-1;Parent=Msa0327670;Name=Msa0327670-mRNA-1;_AED=0.34;_eAED=0.34;_QI=228|1|1|1|1|1|3|306|586
chr2_4 exon 39587649 39589510 39587649 ID=Msa0327670-mRNA-1:exon:11976;Parent=Msa0327670-mRNA-1
chr2_4 exon 39589605 39589703 39589605 ID=Msa0327670-mRNA-1:exon:11975;Parent=Msa0327670-mRNA-1
chr2_4 exon 39591678 39592011 39591678 ID=Msa0327670-mRNA-1:exon:11974;Parent=Msa0327670-mRNA-1
chr2_4 five_prime_UTR 39591784 39592011 39591784 ID=Msa0327670-mRNA-1:five_prime_utr;Parent=Msa0327670-mRNA-1
chr2_4 CDS 39591678 39591783 39591678 ID=Msa0327670-mRNA-1:cds;Parent=Msa0327670-mRNA-1
chr2_4 CDS 39589605 39589703 39589605 ID=Msa0327670-mRNA-1:cds;Parent=Msa0327670-mRNA-1
chr2_4 CDS 39587955 39589510 39587955 ID=Msa0327670-mRNA-1:cds;Parent=Msa0327670-mRNA-1
chr2_4 three_prime_UTR 39587649 39587954 39587649 ID=Msa0327670-mRNA-1:three_prime_utr;Parent=Msa0327670-mRNA-1
Gene Sequence

>Msa0327670

ATGGGTGTTAATGTGAATGTGAGGATTCTTTGTGTTTGTGTTGTGCTTTTCATGGCAATTGAAGCAATGGGAGTTCATCAAACTGCACCAATGGATCAATTTTCAGAGAATAAGAACATCTTCAAGAAAAAACGACCTAGATCCCGCTCTCGCCCCATTGACTACGCATTCAAACTTCCAATTGCACAAACTTCTTGGCCAAAAGGTAACGGGTTTGCAGGCGGATTCCTCGATCTAGGTGGGCTGCAAGTGTATCAAGCATCAACTTTCAGCAAAGTTTGGGGCGCGTACGAGGGTGGCCCGGACAATCAAGGCGCCTCTGTGTACGAACCAACAGGAATACCTAAAGGATTCTCTATGTTAGGTAGCTACAGCCAACCAAACAATAAGCCTCTTTTTGGATATGTTTTTGTAGCAAAGGATGTTTCTTCAAGTACCACAGGTAGAACTTTAAAACCACCGGTTGATTACACACTTGTGTCGAACACCGCATTCTTCAAGGCTACTCAAGATTCCACTCTGTTTATTTGGTTACCAATAGCACCTAATGGATACAAAGCTTTAGGCCATGTTGTCACCACAACACAAGATAAACCTTCCTTTGATAAAATCATGTGTGTCAGATCAGACCTCACAGACCAATGTGAGTCGTCTTCGTGGATTTGGGGATCAAACAGCTTCAATTTCTACGATGTTAGACCAATCAATAGAGGAACTCAAGCTCCTGGTGTTCGAGTCGGTACCTTCGTTGCACAAAATGGTGGGAATACTAACCCTCCATCAATTTCATGTTTGAAGAATCTCAAGTCTATTTCACAAATCATGCCTAATAAAAAACAAATCGAGGCAATGCTCCAAGTTTACTCTCCATTTCTATACTTACATTCTGATGAAGAATACTTACCTTCCTCGGTTAATTGGTTTTTCTCCAATGGAGCATTACTATACAAGAAAGGGCAAGAATCAAATCCTGTTCCAATAGCACAAAATGGAACTAACCTTCCTCAGGATCCTAACACCGATGGTTCCTATTGGCTTGACCTACCTGCTGATAATGCAAACAAAGAGAGAGTCAAGAAAGGTAATCTTCAAAGTGCAGAATCTTATGTACATGTGAAACCAATGTATGGAGGAACATTCACTGATATTGCTATGTGGATTTTCTACCCTTTTAATGGACCTGGGAGAGCAAAAGTAGAGTTCATAAATGTGAAATTAGGGAAAATAGGTGAACATGTTGGTGATTGGGAGCATGTGACATTAAGGGTGAGTAATTTGGATGGTCAATTATGGCATGTATATTTCTCACAACATAATCTTGGTTCATGGATTGATTCATCTCAACTTGAGTTCCAAGATGGAATAGGTGCAACAAAAAGACCTGTTGTATATGCTTCATTGCATGGTCATGCATCATATCCACATGCTGGTCTTGTTCTATTAGGGAAAAATGGAATAGGTGCAATAGATGATACTAATAAAGGAAAGAATGTTATGGATATGGGAAAATTTGTATTGGTTTCTGCAGAGTATTTAAGGTCTGAAGTTAAAGAGCCAGCATGGTTGAATTTTTTTAGGCAATGGGGTCCACATGTGGACTATAGTCTAGATGATGAGTTGAAGAATGTTGAGAAGTTATTGCCTGGGAAGTTAAAAAACGGTTTTGAAGATATTATTAGGGACTTACCAAAAGAAATGTTGGGAGAGGCAGGACCAACAGGTCCAAAGCAAAAGAATAATTGGAGTGGTGATGAAGTTTGA
Protein sequence

>Msa0327670

MGVNVNVRILCVCVVLFMAIEAMGVHQTAPMDQFSENKNIFKKKRPRSRSRPIDYAFKLPIAQTSWPKGNGFAGGFLDLGGLQVYQASTFSKVWGAYEGGPDNQGASVYEPTGIPKGFSMLGSYSQPNNKPLFGYVFVAKDVSSSTTGRTLKPPVDYTLVSNTAFFKATQDSTLFIWLPIAPNGYKALGHVVTTTQDKPSFDKIMCVRSDLTDQCESSSWIWGSNSFNFYDVRPINRGTQAPGVRVGTFVAQNGGNTNPPSISCLKNLKSISQIMPNKKQIEAMLQVYSPFLYLHSDEEYLPSSVNWFFSNGALLYKKGQESNPVPIAQNGTNLPQDPNTDGSYWLDLPADNANKERVKKGNLQSAESYVHVKPMYGGTFTDIAMWIFYPFNGPGRAKVEFINVKLGKIGEHVGDWEHVTLRVSNLDGQLWHVYFSQHNLGSWIDSSQLEFQDGIGATKRPVVYASLHGHASYPHAGLVLLGKNGIGAIDDTNKGKNVMDMGKFVLVSAEYLRSEVKEPAWLNFFRQWGPHVDYSLDDELKNVEKLLPGKLKNGFEDIIRDLPKEMLGEAGPTGPKQKNNWSGDEV*