Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1190160 | XP_003608787.1 | 98.866 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 0.0 | 909 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1190160 | sp|Q9LNA5|ACR8_ARATH | 68.578 | 436 | 133 | 2 | 8 | 441 | 8 | 441 | 0.0 | 604 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1190160 | G7JK72 | 98.866 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 0.0 | 909 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077340 | Msa1190160 | 0.813947 | 1.977603e-51 | -8.615850e-47 |
| Msa0077560 | Msa1190160 | 0.820610 | 6.262910e-53 | -8.615850e-47 |
| Msa0610700 | Msa1190160 | -0.815508 | 8.919446e-52 | -8.615850e-47 |
| Msa0662820 | Msa1190160 | 0.809225 | 2.102541e-50 | -8.615850e-47 |
| Msa0693340 | Msa1190160 | -0.840865 | 6.720270e-58 | -8.615850e-47 |
| Msa0125360 | Msa1190160 | 0.804325 | 2.280732e-49 | -8.615850e-47 |
| Msa0204950 | Msa1190160 | 0.811680 | 6.203182e-51 | -8.615850e-47 |
| Msa0409830 | Msa1190160 | 0.806022 | 1.006412e-49 | -8.615850e-47 |
| Msa0241610 | Msa1190160 | 0.860915 | 1.480233e-63 | -8.615850e-47 |
| Msa0249850 | Msa1190160 | 0.820734 | 5.865281e-53 | -8.615850e-47 |
| Msa0281470 | Msa1190160 | 0.800103 | 1.685866e-48 | -8.615850e-47 |
| Msa0317870 | Msa1190160 | 0.812177 | 4.833625e-51 | -8.615850e-47 |
| Msa0320600 | Msa1190160 | 0.813644 | 2.305418e-51 | -8.615850e-47 |
| Msa0327670 | Msa1190160 | 0.823392 | 1.419868e-53 | -8.615850e-47 |
| Msa0327690 | Msa1190160 | 0.815294 | 9.951942e-52 | -8.615850e-47 |
| Msa0361910 | Msa1190160 | 0.812455 | 4.203841e-51 | -8.615850e-47 |
| Msa1115740 | Msa1190160 | 0.804339 | 2.265283e-49 | -8.615850e-47 |
| Msa1158200 | Msa1190160 | 0.850066 | 2.159231e-60 | -8.615850e-47 |
| Msa1184890 | Msa1190160 | 0.820341 | 7.219369e-53 | -8.615850e-47 |
| Msa1190160 | Msa1190180 | 0.946681 | 2.900136e-105 | -8.615850e-47 |
| Msa1190160 | Msa1258000 | 0.963716 | 1.995732e-122 | -8.615850e-47 |
| Msa1190160 | Msa1299740 | -0.820218 | 7.702732e-53 | -8.615850e-47 |
| Msa1190160 | Msa1365820 | 0.839459 | 1.564725e-57 | -8.615850e-47 |
| Msa1190160 | Msa1368390 | 0.817602 | 3.028048e-52 | -8.615850e-47 |
| Msa1190160 | Msa1398810 | 0.817723 | 2.844530e-52 | -8.615850e-47 |
| Msa1190160 | Msa1401670 | 0.960026 | 4.289406e-118 | -8.615850e-47 |
| Msa1190160 | Msa1464090 | 0.815077 | 1.111982e-51 | -8.615850e-47 |
| Msa0519760 | Msa1190160 | 0.822377 | 2.447398e-53 | -8.615850e-47 |
| Msa0519840 | Msa1190160 | 0.817945 | 2.534256e-52 | -8.615850e-47 |
| Msa0555860 | Msa1190160 | -0.802245 | 6.147411e-49 | -8.615850e-47 |
| Msa0579070 | Msa1190160 | -0.825763 | 3.925574e-54 | -8.615850e-47 |
| Msa0597700 | Msa1190160 | 0.819696 | 1.014388e-52 | -8.615850e-47 |
| Msa0865420 | Msa1190160 | 0.804524 | 2.073120e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1190160 | MtrunA17_Chr4g0056741 | 98.866 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 0.0 | 909 |
| Msa1190160 | MtrunA17_Chr5g0398581 | 76.644 | 441 | 103 | 0 | 1 | 441 | 1 | 441 | 0.0 | 717 |
| Msa1190160 | MtrunA17_Chr5g0420221 | 52.036 | 442 | 195 | 5 | 8 | 441 | 19 | 451 | 3.43e-151 | 437 |
| Msa1190160 | MtrunA17_Chr7g0222461 | 50.109 | 459 | 198 | 6 | 3 | 441 | 4 | 451 | 1.11e-150 | 435 |
| Msa1190160 | MtrunA17_Chr7g0224571 | 49.330 | 448 | 205 | 5 | 8 | 441 | 3 | 442 | 2.48e-146 | 424 |
| Msa1190160 | MtrunA17_Chr3g0125661 | 47.439 | 449 | 209 | 9 | 3 | 431 | 6 | 447 | 1.97e-132 | 389 |
| Msa1190160 | MtrunA17_Chr1g0159541 | 46.698 | 424 | 196 | 6 | 3 | 399 | 6 | 426 | 3.32e-130 | 383 |
| Msa1190160 | MtrunA17_Chr5g0400941 | 41.627 | 418 | 207 | 6 | 9 | 391 | 12 | 427 | 6.28e-105 | 320 |
| Msa1190160 | MtrunA17_Chr4g0054261 | 38.551 | 428 | 227 | 7 | 9 | 400 | 31 | 458 | 8.26e-93 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1190160 | AT1G12420.1 | 68.578 | 436 | 133 | 2 | 8 | 441 | 8 | 441 | 0.0 | 604 |
| Msa1190160 | AT4G22780.1 | 62.306 | 451 | 154 | 7 | 1 | 439 | 1 | 447 | 0.0 | 554 |
| Msa1190160 | AT4G22780.2 | 62.306 | 451 | 154 | 7 | 1 | 439 | 1 | 447 | 0.0 | 554 |
| Msa1190160 | AT1G12420.2 | 66.846 | 371 | 119 | 2 | 73 | 441 | 1 | 369 | 7.53e-177 | 499 |
| Msa1190160 | AT1G69040.2 | 50.559 | 447 | 204 | 5 | 8 | 441 | 13 | 455 | 7.44e-154 | 444 |
| Msa1190160 | AT1G69040.1 | 50.559 | 447 | 204 | 5 | 8 | 441 | 9 | 451 | 9.72e-154 | 444 |
| Msa1190160 | AT2G03730.2 | 49.558 | 452 | 200 | 7 | 8 | 439 | 13 | 456 | 8.93e-143 | 416 |
| Msa1190160 | AT2G03730.1 | 49.558 | 452 | 200 | 7 | 8 | 439 | 13 | 456 | 8.93e-143 | 416 |
| Msa1190160 | AT3G01990.7 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.65e-137 | 402 |
| Msa1190160 | AT3G01990.5 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.65e-137 | 402 |
| Msa1190160 | AT3G01990.11 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 1.79e-137 | 401 |
| Msa1190160 | AT3G01990.6 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.94e-137 | 402 |
| Msa1190160 | AT3G01990.10 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 2.32e-137 | 401 |
| Msa1190160 | AT3G01990.1 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 2.32e-137 | 401 |
| Msa1190160 | AT1G76990.4 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1190160 | AT1G76990.5 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1190160 | AT1G76990.2 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1190160 | AT1G76990.3 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1190160 | AT1G76990.1 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1190160 | AT5G25320.1 | 40.632 | 443 | 214 | 6 | 3 | 396 | 6 | 448 | 3.33e-113 | 342 |
| Msa1190160 | AT3G01990.9 | 50.453 | 331 | 148 | 3 | 8 | 326 | 4 | 330 | 2.06e-108 | 324 |
| Msa1190160 | AT3G01990.4 | 50.453 | 331 | 148 | 3 | 8 | 326 | 18 | 344 | 2.12e-108 | 324 |
| Msa1190160 | AT5G25320.3 | 41.320 | 409 | 193 | 5 | 35 | 396 | 1 | 409 | 3.01e-108 | 328 |
| Msa1190160 | AT3G01990.2 | 50.920 | 326 | 144 | 3 | 8 | 321 | 18 | 339 | 3.55e-108 | 323 |
| Msa1190160 | AT5G65890.1 | 40.385 | 416 | 211 | 6 | 9 | 389 | 13 | 426 | 9.58e-101 | 309 |
| Msa1190160 | AT5G65890.3 | 40.385 | 416 | 211 | 6 | 9 | 389 | 13 | 426 | 9.58e-101 | 309 |
| Msa1190160 | AT3G01990.3 | 48.621 | 290 | 133 | 3 | 8 | 285 | 18 | 303 | 3.10e-87 | 269 |
| Msa1190160 | AT5G65890.4 | 39.467 | 375 | 190 | 6 | 50 | 389 | 2 | 374 | 3.25e-87 | 273 |
| Msa1190160 | AT5G65890.2 | 39.467 | 375 | 190 | 6 | 50 | 389 | 2 | 374 | 3.25e-87 | 273 |
| Msa1190160 | AT3G01990.8 | 48.621 | 290 | 133 | 3 | 8 | 285 | 4 | 289 | 4.09e-87 | 268 |
| Msa1190160 | AT5G25320.2 | 39.402 | 368 | 174 | 6 | 3 | 321 | 6 | 373 | 4.97e-87 | 270 |
| Msa1190160 | AT5G65890.5 | 37.500 | 296 | 163 | 4 | 114 | 389 | 19 | 312 | 1.05e-62 | 207 |
| Msa1190160 | AT2G39570.1 | 24.126 | 286 | 197 | 10 | 28 | 298 | 16 | 296 | 2.59e-11 | 65.5 |
Find 151 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGAATTCCATGCTTTC+TGG | 0.070129 | 8_1:+33032777 | None:intergenic |
| CATATGCTTTCTTAATAAAA+AGG | 0.188552 | 8_1:+33032725 | None:intergenic |
| TCAGAACTAAACTTGAAAAT+TGG | 0.205980 | 8_1:+33032064 | None:intergenic |
| GAGAAGGAATCTGTACAATT+TGG | 0.211853 | 8_1:-33031248 | Msa1190160:CDS |
| ATTATTCCTTGCTTCAAGTT+TGG | 0.225846 | 8_1:-33031136 | Msa1190160:three_prime_UTR |
| CAAGCAAAGCACATTTAAAA+TGG | 0.244916 | 8_1:+33030993 | None:intergenic |
| TTATTCCTTGCTTCAAGTTT+GGG | 0.252486 | 8_1:-33031135 | Msa1190160:three_prime_UTR |
| ATTTGGTGGAGCCTTCTTTC+AGG | 0.258400 | 8_1:+33032118 | None:intergenic |
| TTCTGAGGTGTTTGCTGTAT+TGG | 0.260105 | 8_1:-33032350 | Msa1190160:CDS |
| TGTCTCATAACCGTCGTTTC+AGG | 0.268965 | 8_1:-33033539 | Msa1190160:five_prime_UTR |
| TGAGAAGGAATAGGAGAGTT+TGG | 0.278470 | 8_1:-33033689 | Msa1190160:five_prime_UTR |
| CAGAAAGCATGGAATTCTTT+TGG | 0.281447 | 8_1:-33032776 | Msa1190160:CDS |
| TACCTTGACTATAGTTGAAT+TGG | 0.284936 | 8_1:+33032902 | None:intergenic |
| TTTCATGTTACCGATCAAAA+TGG | 0.291087 | 8_1:-33032589 | Msa1190160:CDS |
| CGCTCCGGTTCTGAACTAAT+TGG | 0.301964 | 8_1:+33031744 | None:intergenic |
| GCTCCGGTTCTGAACTAATT+GGG | 0.318294 | 8_1:+33031745 | None:intergenic |
| TGAATCTTTCTATGTATAGA+AGG | 0.325840 | 8_1:+33033588 | None:intergenic |
| TTGGTTGGATTGGATTCATT+TGG | 0.330750 | 8_1:-33031060 | Msa1190160:three_prime_UTR |
| AGGTAGAGGGAGGAACAATT+TGG | 0.330947 | 8_1:-33030869 | Msa1190160:three_prime_UTR |
| GAATGTAGAATATGATTCTT+TGG | 0.337577 | 8_1:-33030911 | Msa1190160:three_prime_UTR |
| TTTCTTGAATGCAGGGTGTT+AGG | 0.338412 | 8_1:-33031579 | Msa1190160:intron |
| AGAAGGAATCTGTACAATTT+GGG | 0.351653 | 8_1:-33031247 | Msa1190160:CDS |
| CGGTAGTGACTGTACAGAAT+TGG | 0.353447 | 8_1:-33032036 | Msa1190160:CDS |
| TACAAGGAGATAGTGATATT+AGG | 0.356042 | 8_1:-33032177 | Msa1190160:CDS |
| TATGTTAAAGACAGCATCTC+TGG | 0.364796 | 8_1:-33032259 | Msa1190160:CDS |
| CCATCCCTCCAGCTGGATAA+AGG | 0.365406 | 8_1:+33031023 | None:intergenic |
| GCTGTCTTTAACATAAATTA+AGG | 0.381361 | 8_1:+33032267 | None:intergenic |
| AGGATTCTCAGAAAATTAAT+CGG | 0.384316 | 8_1:-33032225 | Msa1190160:CDS |
| CACGGTCTGCAAACATCATT+TGG | 0.388010 | 8_1:+33032101 | None:intergenic |
| CAGAGAGAGTGAGAAGGAAT+AGG | 0.402611 | 8_1:-33033698 | Msa1190160:five_prime_UTR |
| ATCTGATGGAAGATGGTTCA+TGG | 0.410749 | 8_1:-33032698 | Msa1190160:CDS |
| GGGGCAGTGTTATTGTCTCT+TGG | 0.420031 | 8_1:-33031280 | Msa1190160:CDS |
| TAGGAGAGTTTGGTAAGAGT+GGG | 0.425429 | 8_1:-33033679 | Msa1190160:five_prime_UTR |
| ATCTTTCATGAGCGTGCATA+AGG | 0.427436 | 8_1:+33030740 | None:intergenic |
| TTCTTAAAGCAGAAAGATAA+GGG | 0.434943 | 8_1:-33031209 | Msa1190160:exon |
| TGCTTTGCTTGAAGAAAAGA+AGG | 0.436855 | 8_1:-33030981 | Msa1190160:three_prime_UTR |
| ATCCATAGTAGGTTGTGAAA+AGG | 0.442398 | 8_1:-33030934 | Msa1190160:three_prime_UTR |
| GTTAAGCAATTTAAAAGTAA+AGG | 0.442529 | 8_1:-33031362 | Msa1190160:CDS |
| AGGGAGGAACAATTTGGATT+GGG | 0.445622 | 8_1:-33030863 | Msa1190160:three_prime_UTR |
| CTAATTCTTACGTAAATTGT+GGG | 0.449440 | 8_1:-33030670 | Msa1190160:three_prime_UTR |
| TGTACAGAATTGGGCAGAAA+GGG | 0.454717 | 8_1:-33032026 | Msa1190160:CDS |
| AATAGGTTGTTATCCATAGT+AGG | 0.455518 | 8_1:-33030945 | Msa1190160:three_prime_UTR |
| GTTCTTAAAGCAGAAAGATA+AGG | 0.456386 | 8_1:-33031210 | Msa1190160:exon |
| ATCAAGGCGAGGATTGCGTT+TGG | 0.457398 | 8_1:-33033747 | Msa1190160:five_prime_UTR |
| TCTCACTGCCTTGGAATTGA+AGG | 0.460594 | 8_1:-33032395 | Msa1190160:CDS |
| AAAGCATATGTTTCATCTGA+TGG | 0.461288 | 8_1:-33032712 | Msa1190160:CDS |
| GATTGGATTCATTTGGTATG+TGG | 0.463686 | 8_1:-33031053 | Msa1190160:three_prime_UTR |
| ACTAATTCTTACGTAAATTG+TGG | 0.463801 | 8_1:-33030671 | Msa1190160:three_prime_UTR |
| GGTAGTGACTGTACAGAATT+GGG | 0.466583 | 8_1:-33032035 | Msa1190160:CDS |
| GAGGGAGGAACAATTTGGAT+TGG | 0.467021 | 8_1:-33030864 | Msa1190160:three_prime_UTR |
| CATAACTACCACCGGAGACT+TGG | 0.467944 | 8_1:-33031467 | Msa1190160:CDS |
| GTGGCACAGAAAGGAAGATT+AGG | 0.467978 | 8_1:-33030889 | Msa1190160:three_prime_UTR |
| CATAAATTAAGGAGGCTGTT+CGG | 0.469802 | 8_1:+33032278 | None:intergenic |
| ATAGGAGAGTTTGGTAAGAG+TGG | 0.469805 | 8_1:-33033680 | Msa1190160:five_prime_UTR |
| TGAATTACACGATGGCGCTC+CGG | 0.474232 | 8_1:+33031729 | None:intergenic |
| TTACATTCAACCCGTTCTCT+CGG | 0.476911 | 8_1:+33031500 | None:intergenic |
| CAGAAAGGAAGATTAGGTAG+AGG | 0.477546 | 8_1:-33030883 | Msa1190160:three_prime_UTR |
| TATAGTTGAATTGGAACAAA+CGG | 0.479069 | 8_1:+33032911 | None:intergenic |
| TAGAAATGGTCTCACTGCCT+TGG | 0.483190 | 8_1:-33032404 | Msa1190160:CDS |
| TCCATAGTAGGTTGTGAAAA+GGG | 0.484251 | 8_1:-33030933 | Msa1190160:three_prime_UTR |
| AACCCCAATTAGTTCAGAAC+CGG | 0.487755 | 8_1:-33031748 | Msa1190160:CDS |
| GGATAACAACCTATTACAAA+AGG | 0.489223 | 8_1:+33030953 | None:intergenic |
| GATCAATCAGTTGGAGTTGG+AGG | 0.489723 | 8_1:-33031301 | Msa1190160:CDS |
| TTCTATGCAACAGATGCCAT+TGG | 0.489734 | 8_1:-33031433 | Msa1190160:CDS |
| ATGTGGTGGAGGCTAAAGTA+TGG | 0.495423 | 8_1:-33032312 | Msa1190160:CDS |
| AACATTTGCAGCCAAGTCTC+CGG | 0.500842 | 8_1:+33031456 | None:intergenic |
| CTGTACAGAATTGGGCAGAA+AGG | 0.501383 | 8_1:-33032027 | Msa1190160:CDS |
| TTGGTCAGCTGGGTATCCAA+TGG | 0.501529 | 8_1:+33031417 | None:intergenic |
| ATCAAGCTACTAAGATAAGA+TGG | 0.502245 | 8_1:-33033463 | Msa1190160:exon |
| ATGTTTCATCTGATGGAAGA+TGG | 0.504319 | 8_1:-33032705 | Msa1190160:CDS |
| TGAGAACATTCCGAGAGAAC+GGG | 0.510017 | 8_1:-33031510 | Msa1190160:CDS |
| GAGAGTGGGAAGATAGAGAA+AGG | 0.510802 | 8_1:-33033722 | Msa1190160:five_prime_UTR |
| AAGAGGGAGAGTTAAGATCA+AGG | 0.511157 | 8_1:-33033763 | None:intergenic |
| ATGCATTAAAAGCCACCGCT+TGG | 0.514841 | 8_1:-33033627 | Msa1190160:five_prime_UTR |
| TTCCAATTCAACTATAGTCA+AGG | 0.517688 | 8_1:-33032904 | Msa1190160:intron |
| ATGAGAACATTCCGAGAGAA+CGG | 0.522763 | 8_1:-33031511 | Msa1190160:CDS |
| GAAGATCAATCAGTTGGAGT+TGG | 0.523868 | 8_1:-33031304 | Msa1190160:CDS |
| AGCACAGCTTCCTGAAACGA+CGG | 0.523884 | 8_1:+33033529 | None:intergenic |
| TGTACAGATTCCTTCTCACT+AGG | 0.528667 | 8_1:+33031254 | None:intergenic |
| TTTGATAGTGCCAGAAAGCA+TGG | 0.529161 | 8_1:-33032787 | Msa1190160:CDS |
| TCGCGTTGGTCTTCTTTCTG+AGG | 0.530642 | 8_1:-33032365 | Msa1190160:CDS |
| CTCCGGTTCTGAACTAATTG+GGG | 0.530984 | 8_1:+33031746 | None:intergenic |
| TGTTGTTAATGTTCAGTGCA+AGG | 0.531806 | 8_1:-33031996 | Msa1190160:CDS |
| AGAGGGTCCATCCCTCCAGC+TGG | 0.533239 | 8_1:+33031016 | None:intergenic |
| CCTTTATCCAGCTGGAGGGA+TGG | 0.539543 | 8_1:-33031023 | Msa1190160:three_prime_UTR |
| GAAAATGACCTTTATCCAGC+TGG | 0.541468 | 8_1:-33031031 | Msa1190160:three_prime_UTR |
| AAGGGTTGACCAAGCATACA+TGG | 0.542021 | 8_1:-33031894 | Msa1190160:intron |
| AAAGGACAGAGAGAGTGAGA+AGG | 0.542628 | 8_1:-33033704 | Msa1190160:five_prime_UTR |
| GTCTCCGGTGGTAGTTATGT+CGG | 0.542647 | 8_1:+33031471 | None:intergenic |
| GAGAGGGAAGATCAATCAGT+TGG | 0.543799 | 8_1:-33031310 | Msa1190160:CDS |
| CTGTTATACATCCTGAAAGA+AGG | 0.544238 | 8_1:-33032129 | Msa1190160:CDS |
| GATTCTTTGGTGGCACAGAA+AGG | 0.549018 | 8_1:-33030898 | Msa1190160:three_prime_UTR |
| GATGGAATGGTCTTCATGTA+CGG | 0.550387 | 8_1:-33033445 | Msa1190160:CDS |
| ATCAATCAGTTGGAGTTGGA+GGG | 0.550430 | 8_1:-33031300 | Msa1190160:CDS |
| ATCTGTGCCCTTCAATTCCA+AGG | 0.552997 | 8_1:+33032387 | None:intergenic |
| AAGTAATTACCATGTATGCT+TGG | 0.554876 | 8_1:+33031885 | None:intergenic |
| CATCTCTGGGACATCTATTG+AGG | 0.555516 | 8_1:-33032245 | Msa1190160:CDS |
| CAAGTTTAGTTCTGAAACGC+CGG | 0.562418 | 8_1:-33032056 | Msa1190160:CDS |
| ATGTTAAAGACAGCATCTCT+GGG | 0.565140 | 8_1:-33032258 | Msa1190160:CDS |
| CACCACATCACATTGCAGCT+CGG | 0.565793 | 8_1:+33032327 | None:intergenic |
| GCTACTAAGATAAGATGGAA+TGG | 0.566013 | 8_1:-33033458 | Msa1190160:exon |
| CAATTCTGTACAGTCACTAC+CGG | 0.573952 | 8_1:+33032037 | None:intergenic |
| TGTAGAATATGATTCTTTGG+TGG | 0.574287 | 8_1:-33030908 | Msa1190160:three_prime_UTR |
| CGTAAGAATTAGTATTTGCG+TGG | 0.575573 | 8_1:+33030681 | None:intergenic |
| ATGTATAACAGCATCAGAGA+TGG | 0.579130 | 8_1:+33032141 | None:intergenic |
| AAGTCATCAAAAGGTAGAGA+GGG | 0.580764 | 8_1:-33031326 | Msa1190160:CDS |
| CAAGTCATCAAAAGGTAGAG+AGG | 0.580801 | 8_1:-33031327 | Msa1190160:CDS |
| AGAAAGGAAGATTAGGTAGA+GGG | 0.587395 | 8_1:-33030882 | Msa1190160:three_prime_UTR |
| TCAATCAGTTGGAGTTGGAG+GGG | 0.591152 | 8_1:-33031299 | Msa1190160:CDS |
| CTCTTGGAAGCCTAGTGAGA+AGG | 0.591708 | 8_1:-33031264 | Msa1190160:CDS |
| TAATAATCTTCAATAATCCT+CGG | 0.593923 | 8_1:+33033485 | None:intergenic |
| GCTGCAATGTGATGTGGTGG+AGG | 0.598200 | 8_1:-33032323 | Msa1190160:CDS |
| CTCACTGCCTTGGAATTGAA+GGG | 0.602145 | 8_1:-33032394 | Msa1190160:CDS |
| GTCTTTAACATAAATTAAGG+AGG | 0.602985 | 8_1:+33032270 | None:intergenic |
| TTACTAGAAATTCCAAGCGG+TGG | 0.604680 | 8_1:+33033615 | None:intergenic |
| CCCTTGTGTTGATAGTTGCA+TGG | 0.605571 | 8_1:+33031912 | None:intergenic |
| GATTGCGTTTGGAAGAGAGT+GGG | 0.607067 | 8_1:-33033736 | Msa1190160:five_prime_UTR |
| GCAGAAAGATAAGGGCGTGA+GGG | 0.608985 | 8_1:-33031201 | Msa1190160:three_prime_UTR |
| AAAGCACATTTAAAATGGAG+AGG | 0.609825 | 8_1:+33030998 | None:intergenic |
| TCACTTAGTAGCATTTACAA+TGG | 0.611593 | 8_1:-33032439 | Msa1190160:CDS |
| GAATCTTTCTATGTATAGAA+GGG | 0.611652 | 8_1:+33033589 | None:intergenic |
| CAAAGCCCAAACTTGAAGCA+AGG | 0.617938 | 8_1:+33031130 | None:intergenic |
| GGTCTGCAAACATCATTTGG+TGG | 0.620069 | 8_1:+33032104 | None:intergenic |
| TTGGATTCATCTGATAATCA+CGG | 0.620667 | 8_1:+33032083 | None:intergenic |
| AAGCACATTTAAAATGGAGA+GGG | 0.627278 | 8_1:+33030999 | None:intergenic |
| AGCAGAAAGATAAGGGCGTG+AGG | 0.630544 | 8_1:-33031202 | Msa1190160:three_prime_UTR |
| AAGGAAGATTAGGTAGAGGG+AGG | 0.632537 | 8_1:-33030879 | Msa1190160:three_prime_UTR |
| TTGAAGGGCACAGATCGCGT+TGG | 0.633204 | 8_1:-33032379 | Msa1190160:CDS |
| TGTGTGCAATTTAACAGACA+TGG | 0.633650 | 8_1:-33031948 | Msa1190160:CDS |
| CGAGCTGCAATGTGATGTGG+TGG | 0.634692 | 8_1:-33032326 | Msa1190160:CDS |
| CTATGCACTGAAGACAGACA+AGG | 0.636939 | 8_1:-33031550 | Msa1190160:CDS |
| AATGACCTTTATCCAGCTGG+AGG | 0.638358 | 8_1:-33031028 | Msa1190160:three_prime_UTR |
| GGCCGAGCTGCAATGTGATG+TGG | 0.638970 | 8_1:-33032329 | Msa1190160:CDS |
| CGTGCCGACATAACTACCAC+CGG | 0.642054 | 8_1:-33031475 | Msa1190160:CDS |
| TCCATGCAACTATCAACACA+AGG | 0.643713 | 8_1:-33031913 | Msa1190160:CDS |
| GGATTGCGTTTGGAAGAGAG+TGG | 0.648149 | 8_1:-33033737 | Msa1190160:five_prime_UTR |
| CAGACAAGGGCTTCTCGCCG+AGG | 0.655196 | 8_1:-33031536 | Msa1190160:CDS |
| GTACAGAATTGGGCAGAAAG+GGG | 0.660005 | 8_1:-33032025 | Msa1190160:CDS |
| ATGACCTTTATCCAGCTGGA+GGG | 0.662517 | 8_1:-33031027 | Msa1190160:three_prime_UTR |
| GATGGAAGATGGTTCATGGA+TGG | 0.664920 | 8_1:-33032694 | Msa1190160:intron |
| TCGGAATGTTCTCATCACCT+CGG | 0.665865 | 8_1:+33031519 | None:intergenic |
| GGAGAGTTAAGATCAAGGCG+AGG | 0.672892 | 8_1:-33033758 | Msa1190160:five_prime_UTR |
| GCAAGCATTGAATTACACGA+TGG | 0.673003 | 8_1:+33031721 | None:intergenic |
| TAATCTTCAATAATCCTCGG+TGG | 0.688570 | 8_1:+33033488 | None:intergenic |
| ATTTGCAGCCAAGTCTCCGG+TGG | 0.688653 | 8_1:+33031459 | None:intergenic |
| GCTAAAGTATGGACTCACAA+TGG | 0.689830 | 8_1:-33032301 | Msa1190160:CDS |
| TATGCACTGAAGACAGACAA+GGG | 0.701710 | 8_1:-33031549 | Msa1190160:CDS |
| AGTAGAGAGAAGATCATGCG+AGG | 0.712972 | 8_1:-33031691 | Msa1190160:intron |
| CCATGCAACTATCAACACAA+GGG | 0.731496 | 8_1:-33031912 | Msa1190160:CDS |
| TTACTACTTTAAAACCACCG+AGG | 0.761305 | 8_1:-33033502 | Msa1190160:five_prime_UTR |
| AAGTTACTAGAAATTCCAAG+CGG | 0.792461 | 8_1:+33033612 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTAAAAATAATTTTGT+CGG | + | chr8_1:33031404-33031423 | None:intergenic | 10.0% |
| !!! | ATAATAATGCAATTATTTTT+TGG | - | chr8_1:33032542-33032561 | Msa1190160:intron | 10.0% |
| !!! | ATTTGCATTTAACTTTTTTA+TGG | - | chr8_1:33031087-33031106 | Msa1190160:three_prime_UTR | 15.0% |
| !! | AAATCAATTATAGAAAAAGT+TGG | + | chr8_1:33031378-33031397 | None:intergenic | 15.0% |
| !! | AGAAAATTCCTTAATTAATT+TGG | - | chr8_1:33031523-33031542 | Msa1190160:CDS | 15.0% |
| !! | GAAAATTCCTTAATTAATTT+GGG | - | chr8_1:33031524-33031543 | Msa1190160:CDS | 15.0% |
| !! | CATTAAACAACAAAAAATTA+GGG | + | chr8_1:33031777-33031796 | None:intergenic | 15.0% |
| !! | ACATTAAACAACAAAAAATT+AGG | + | chr8_1:33031778-33031797 | None:intergenic | 15.0% |
| !! | AAACAAAGAATTTAGATTTA+TGG | + | chr8_1:33031922-33031941 | None:intergenic | 15.0% |
| !!! | TAATTTTCACATCATTAATT+AGG | + | chr8_1:33032587-33032606 | None:intergenic | 15.0% |
| !!! | GTGAAAATTATTTTTATTTC+AGG | - | chr8_1:33032597-33032616 | Msa1190160:intron | 15.0% |
| !! | ATCTTAATATATTCATATCA+CGG | + | chr8_1:33032780-33032799 | None:intergenic | 15.0% |
| !! | TGTACATATTAAAAAAGTAA+AGG | - | chr8_1:33033286-33033305 | Msa1190160:intron | 15.0% |
| !! | GTACATATTAAAAAAGTAAA+GGG | - | chr8_1:33033287-33033306 | Msa1190160:intron | 15.0% |
| !! | TAATAATCTTCAATAATCCT+CGG | + | chr8_1:33030911-33030930 | None:intergenic | 20.0% |
| !! | ATTCAGAAAAATTTGATTGA+AGG | + | chr8_1:33031134-33031153 | None:intergenic | 20.0% |
| !! | AAACCAGATATTAATTTCAA+GGG | - | chr8_1:33031182-33031201 | Msa1190160:three_prime_UTR | 20.0% |
| !! | CATATGCTTTCTTAATAAAA+AGG | + | chr8_1:33031671-33031690 | None:intergenic | 20.0% |
| !!! | AATTTTTCAATCTTGTTCAT+TGG | - | chr8_1:33031728-33031747 | Msa1190160:CDS | 20.0% |
| !!! | CGTTTTAAAATATATTGAAC+AGG | - | chr8_1:33031848-33031867 | Msa1190160:intron | 20.0% |
| !! | GTTAAGCAATTTAAAAGTAA+AGG | - | chr8_1:33033031-33033050 | Msa1190160:intron | 20.0% |
| !!! | TTTTGGTGATCTAATTTAAT+AGG | - | chr8_1:33033685-33033704 | Msa1190160:five_prime_UTR | 20.0% |
| ! | GAATCTTTCTATGTATAGAA+GGG | + | chr8_1:33030807-33030826 | None:intergenic | 25.0% |
| ! | TGAATCTTTCTATGTATAGA+AGG | + | chr8_1:33030808-33030827 | None:intergenic | 25.0% |
| ! | AAACATTGAAAAGAGAAAGA+AGG | + | chr8_1:33031025-33031044 | None:intergenic | 25.0% |
| ! | AAGTTAAATGCAAATGAATC+AGG | + | chr8_1:33031082-33031101 | None:intergenic | 25.0% |
| !! | ATATCTGGTTTCAAAACTAA+GGG | + | chr8_1:33031173-33031192 | None:intergenic | 25.0% |
| !! | AATATCTGGTTTCAAAACTA+AGG | + | chr8_1:33031174-33031193 | None:intergenic | 25.0% |
| ! | GAAACCAGATATTAATTTCA+AGG | - | chr8_1:33031181-33031200 | Msa1190160:three_prime_UTR | 25.0% |
| ! | AAACCCTTGAAATTAATATC+TGG | + | chr8_1:33031188-33031207 | None:intergenic | 25.0% |
| ! | TCAATTATAGAAAAAGTTGG+TGG | + | chr8_1:33031375-33031394 | None:intergenic | 25.0% |
| !! | TTTTCGTGTTTGAAAAAAAC+AGG | - | chr8_1:33031443-33031462 | Msa1190160:CDS | 25.0% |
| ! | TTTCGTGTTTGAAAAAAACA+GGG | - | chr8_1:33031444-33031463 | Msa1190160:CDS | 25.0% |
| ! | TATAGTTGAATTGGAACAAA+CGG | + | chr8_1:33031485-33031504 | None:intergenic | 25.0% |
| ! | GTGTAAACCCAAATTAATTA+AGG | + | chr8_1:33031534-33031553 | None:intergenic | 25.0% |
| !!! | TAACTTGTTTCCATTTTGAT+CGG | + | chr8_1:33031817-33031836 | None:intergenic | 25.0% |
| ! | ATATATTGAACAGGTACTAA+TGG | - | chr8_1:33031857-33031876 | Msa1190160:intron | 25.0% |
| ! | GGAAAAACAAATCATAGAAA+TGG | - | chr8_1:33031975-33031994 | Msa1190160:CDS | 25.0% |
| ! | GTCTTTAACATAAATTAAGG+AGG | + | chr8_1:33032126-33032145 | None:intergenic | 25.0% |
| ! | GCTGTCTTTAACATAAATTA+AGG | + | chr8_1:33032129-33032148 | None:intergenic | 25.0% |
| ! | AGGATTCTCAGAAAATTAAT+CGG | - | chr8_1:33032168-33032187 | Msa1190160:CDS | 25.0% |
| !!! | CGTTTAAGATATGTTTTACA+AGG | - | chr8_1:33032200-33032219 | Msa1190160:CDS | 25.0% |
| ! | TCAGAACTAAACTTGAAAAT+TGG | + | chr8_1:33032332-33032351 | None:intergenic | 25.0% |
| !! | TTTTACATTAGACATAAGGA+TGG | - | chr8_1:33032622-33032641 | Msa1190160:intron | 25.0% |
| ! | ATTGTTAATTTCTTGAATGC+AGG | - | chr8_1:33032806-33032825 | Msa1190160:intron | 25.0% |
| ! | TTGTTAATTTCTTGAATGCA+GGG | - | chr8_1:33032807-33032826 | Msa1190160:intron | 25.0% |
| ! | AATCAGTTCGTCAAAAAATT+GGG | - | chr8_1:33033009-33033028 | Msa1190160:intron | 25.0% |
| ! | TTCTTAAAGCAGAAAGATAA+GGG | - | chr8_1:33033184-33033203 | Msa1190160:intron | 25.0% |
| !!! | AAGTTGTTTTTTTCTTCACT+TGG | - | chr8_1:33033314-33033333 | Msa1190160:intron | 25.0% |
| ! | GAATGTAGAATATGATTCTT+TGG | - | chr8_1:33033482-33033501 | Msa1190160:five_prime_UTR | 25.0% |
| !!! | TGAAAGATTACTGTGTTTTT+TGG | - | chr8_1:33033668-33033687 | Msa1190160:five_prime_UTR | 25.0% |
| ! | ACTAATTCTTACGTAAATTG+TGG | - | chr8_1:33033722-33033741 | Msa1190160:five_prime_UTR | 25.0% |
| ! | CTAATTCTTACGTAAATTGT+GGG | - | chr8_1:33033723-33033742 | Msa1190160:five_prime_UTR | 25.0% |
| ! | TTTTATGACGATTTGATCGA+AGG | - | chr8_1:33030737-33030756 | Msa1190160:three_prime_UTR | 30.0% |
| AAGTTACTAGAAATTCCAAG+CGG | + | chr8_1:33030784-33030803 | None:intergenic | 30.0% | |
| ATCAAGCTACTAAGATAAGA+TGG | - | chr8_1:33030930-33030949 | Msa1190160:three_prime_UTR | 30.0% | |
| TGATTGAAGGATGAAGAAAA+TGG | + | chr8_1:33031121-33031140 | None:intergenic | 30.0% | |
| TTCTCTTGAGATTTCTTCTA+AGG | - | chr8_1:33031227-33031246 | Msa1190160:CDS | 30.0% | |
| AAGCAAAAAGAGGTTTGAAT+CGG | + | chr8_1:33031255-33031274 | None:intergenic | 30.0% | |
| !! | AGAAAAAGTTGGTGGAAATT+AGG | + | chr8_1:33031367-33031386 | None:intergenic | 30.0% |
| TTCCAATTCAACTATAGTCA+AGG | - | chr8_1:33031489-33031508 | Msa1190160:CDS | 30.0% | |
| TACCTTGACTATAGTTGAAT+TGG | + | chr8_1:33031494-33031513 | None:intergenic | 30.0% | |
| AAAGCATATGTTTCATCTGA+TGG | - | chr8_1:33031681-33031700 | Msa1190160:intron | 30.0% | |
| TTTCATGTTACCGATCAAAA+TGG | - | chr8_1:33031804-33031823 | Msa1190160:intron | 30.0% | |
| TCACTTAGTAGCATTTACAA+TGG | - | chr8_1:33031954-33031973 | Msa1190160:CDS | 30.0% | |
| TACAAGGAGATAGTGATATT+AGG | - | chr8_1:33032216-33032235 | Msa1190160:CDS | 30.0% | |
| TTGGATTCATCTGATAATCA+CGG | + | chr8_1:33032313-33032332 | None:intergenic | 30.0% | |
| AAGTAATTACCATGTATGCT+TGG | + | chr8_1:33032511-33032530 | None:intergenic | 30.0% | |
| ! | GGAGTTTTACATTAGACATA+AGG | - | chr8_1:33032618-33032637 | Msa1190160:intron | 30.0% |
| !!! | GAACTGATTCGATGATTTTT+TGG | + | chr8_1:33032998-33033017 | None:intergenic | 30.0% |
| GAATCAGTTCGTCAAAAAAT+TGG | - | chr8_1:33033008-33033027 | Msa1190160:intron | 30.0% | |
| AGAAGGAATCTGTACAATTT+GGG | - | chr8_1:33033146-33033165 | Msa1190160:intron | 30.0% | |
| GTTCTTAAAGCAGAAAGATA+AGG | - | chr8_1:33033183-33033202 | Msa1190160:intron | 30.0% | |
| ! | ATTATTCCTTGCTTCAAGTT+TGG | - | chr8_1:33033257-33033276 | Msa1190160:intron | 30.0% |
| ! | TTATTCCTTGCTTCAAGTTT+GGG | - | chr8_1:33033258-33033277 | Msa1190160:intron | 30.0% |
| !!! | TGTTTTTTTCTTCACTTGGT+TGG | - | chr8_1:33033318-33033337 | Msa1190160:intron | 30.0% |
| ! | AAGCACATTTAAAATGGAGA+GGG | + | chr8_1:33033397-33033416 | None:intergenic | 30.0% |
| ! | AAAGCACATTTAAAATGGAG+AGG | + | chr8_1:33033398-33033417 | None:intergenic | 30.0% |
| CAAGCAAAGCACATTTAAAA+TGG | + | chr8_1:33033403-33033422 | None:intergenic | 30.0% | |
| ! | AAGGATTTGCCTTTTGTAAT+AGG | - | chr8_1:33033431-33033450 | Msa1190160:CDS | 30.0% |
| GGATAACAACCTATTACAAA+AGG | + | chr8_1:33033443-33033462 | None:intergenic | 30.0% | |
| AATAGGTTGTTATCCATAGT+AGG | - | chr8_1:33033448-33033467 | Msa1190160:exon | 30.0% | |
| TGTAGAATATGATTCTTTGG+TGG | - | chr8_1:33033485-33033504 | Msa1190160:five_prime_UTR | 30.0% | |
| !! | TTACTACTTTAAAACCACCG+AGG | - | chr8_1:33030891-33030910 | Msa1190160:three_prime_UTR | 35.0% |
| TAATCTTCAATAATCCTCGG+TGG | + | chr8_1:33030908-33030927 | None:intergenic | 35.0% | |
| GCTACTAAGATAAGATGGAA+TGG | - | chr8_1:33030935-33030954 | Msa1190160:three_prime_UTR | 35.0% | |
| CAAAAGAATTCCATGCTTTC+TGG | + | chr8_1:33031619-33031638 | None:intergenic | 35.0% | |
| !! | CAGAAAGCATGGAATTCTTT+TGG | - | chr8_1:33031617-33031636 | Msa1190160:intron | 35.0% |
| ATGTTTCATCTGATGGAAGA+TGG | - | chr8_1:33031688-33031707 | Msa1190160:intron | 35.0% | |
| CATAAATTAAGGAGGCTGTT+CGG | + | chr8_1:33032118-33032137 | None:intergenic | 35.0% | |
| TATGTTAAAGACAGCATCTC+TGG | - | chr8_1:33032134-33032153 | Msa1190160:CDS | 35.0% | |
| ATGTTAAAGACAGCATCTCT+GGG | - | chr8_1:33032135-33032154 | Msa1190160:CDS | 35.0% | |
| ATGTATAACAGCATCAGAGA+TGG | + | chr8_1:33032255-33032274 | None:intergenic | 35.0% | |
| CTGTTATACATCCTGAAAGA+AGG | - | chr8_1:33032264-33032283 | Msa1190160:CDS | 35.0% | |
| TGTTGTTAATGTTCAGTGCA+AGG | - | chr8_1:33032397-33032416 | Msa1190160:CDS | 35.0% | |
| TGTGTGCAATTTAACAGACA+TGG | - | chr8_1:33032445-33032464 | Msa1190160:intron | 35.0% | |
| !! | ACCTTTTGATGACTTGCAAA+AGG | + | chr8_1:33033062-33033081 | None:intergenic | 35.0% |
| AAGTCATCAAAAGGTAGAGA+GGG | - | chr8_1:33033067-33033086 | Msa1190160:intron | 35.0% | |
| GAGAAGGAATCTGTACAATT+TGG | - | chr8_1:33033145-33033164 | Msa1190160:intron | 35.0% | |
| ! | TTTTCTTCACTTGGTTGGAT+TGG | - | chr8_1:33033323-33033342 | Msa1190160:intron | 35.0% |
| ! | TTGGTTGGATTGGATTCATT+TGG | - | chr8_1:33033333-33033352 | Msa1190160:intron | 35.0% |
| GATTGGATTCATTTGGTATG+TGG | - | chr8_1:33033340-33033359 | Msa1190160:intron | 35.0% | |
| TGCTTTGCTTGAAGAAAAGA+AGG | - | chr8_1:33033412-33033431 | Msa1190160:CDS | 35.0% | |
| ATCCATAGTAGGTTGTGAAA+AGG | - | chr8_1:33033459-33033478 | Msa1190160:exon | 35.0% | |
| TCCATAGTAGGTTGTGAAAA+GGG | - | chr8_1:33033460-33033479 | Msa1190160:exon | 35.0% | |
| AGAAAGGAAGATTAGGTAGA+GGG | - | chr8_1:33033511-33033530 | Msa1190160:five_prime_UTR | 35.0% | |
| CGTAAGAATTAGTATTTGCG+TGG | + | chr8_1:33033715-33033734 | None:intergenic | 35.0% | |
| TGAGAAGGAATAGGAGAGTT+TGG | - | chr8_1:33030704-33030723 | Msa1190160:three_prime_UTR | 40.0% | |
| ATAGGAGAGTTTGGTAAGAG+TGG | - | chr8_1:33030713-33030732 | Msa1190160:three_prime_UTR | 40.0% | |
| TAGGAGAGTTTGGTAAGAGT+GGG | - | chr8_1:33030714-33030733 | Msa1190160:three_prime_UTR | 40.0% | |
| TTACTAGAAATTCCAAGCGG+TGG | + | chr8_1:33030781-33030800 | None:intergenic | 40.0% | |
| GATGGAATGGTCTTCATGTA+CGG | - | chr8_1:33030948-33030967 | Msa1190160:three_prime_UTR | 40.0% | |
| GGTTTCAAAACTAAGGGATC+TGG | + | chr8_1:33031167-33031186 | None:intergenic | 40.0% | |
| !! | TTTGATAGTGCCAGAAAGCA+TGG | - | chr8_1:33031606-33031625 | Msa1190160:intron | 40.0% |
| ATCTGATGGAAGATGGTTCA+TGG | - | chr8_1:33031695-33031714 | Msa1190160:CDS | 40.0% | |
| !! | TTCTGAGGTGTTTGCTGTAT+TGG | - | chr8_1:33032043-33032062 | Msa1190160:CDS | 40.0% |
| GCTAAAGTATGGACTCACAA+TGG | - | chr8_1:33032092-33032111 | Msa1190160:CDS | 40.0% | |
| !! | CAAGTTTAGTTCTGAAACGC+CGG | - | chr8_1:33032337-33032356 | Msa1190160:CDS | 40.0% |
| CAATTCTGTACAGTCACTAC+CGG | + | chr8_1:33032359-33032378 | None:intergenic | 40.0% | |
| GGTAGTGACTGTACAGAATT+GGG | - | chr8_1:33032358-33032377 | Msa1190160:CDS | 40.0% | |
| TGTACAGAATTGGGCAGAAA+GGG | - | chr8_1:33032367-33032386 | Msa1190160:CDS | 40.0% | |
| TCCATGCAACTATCAACACA+AGG | - | chr8_1:33032480-33032499 | Msa1190160:intron | 40.0% | |
| CCATGCAACTATCAACACAA+GGG | - | chr8_1:33032481-33032500 | Msa1190160:intron | 40.0% | |
| AACCCCAATTAGTTCAGAAC+CGG | - | chr8_1:33032645-33032664 | Msa1190160:intron | 40.0% | |
| !! | GCAAGCATTGAATTACACGA+TGG | + | chr8_1:33032675-33032694 | None:intergenic | 40.0% |
| ! | TTTCTTGAATGCAGGGTGTT+AGG | - | chr8_1:33032814-33032833 | Msa1190160:intron | 40.0% |
| TATGCACTGAAGACAGACAA+GGG | - | chr8_1:33032844-33032863 | Msa1190160:intron | 40.0% | |
| ATGAGAACATTCCGAGAGAA+CGG | - | chr8_1:33032882-33032901 | Msa1190160:intron | 40.0% | |
| TTACATTCAACCCGTTCTCT+CGG | + | chr8_1:33032896-33032915 | None:intergenic | 40.0% | |
| TTCTATGCAACAGATGCCAT+TGG | - | chr8_1:33032960-33032979 | Msa1190160:intron | 40.0% | |
| !!! | CGATGATTTTTTGGTCAGCT+GGG | + | chr8_1:33032989-33033008 | None:intergenic | 40.0% |
| !!! | TCGATGATTTTTTGGTCAGC+TGG | + | chr8_1:33032990-33033009 | None:intergenic | 40.0% |
| ! | GCCTTTTGCAAGTCATCAAA+AGG | - | chr8_1:33033058-33033077 | Msa1190160:intron | 40.0% |
| CAAGTCATCAAAAGGTAGAG+AGG | - | chr8_1:33033066-33033085 | Msa1190160:intron | 40.0% | |
| GAAGATCAATCAGTTGGAGT+TGG | - | chr8_1:33033089-33033108 | Msa1190160:intron | 40.0% | |
| ATCAATCAGTTGGAGTTGGA+GGG | - | chr8_1:33033093-33033112 | Msa1190160:intron | 40.0% | |
| TGTACAGATTCCTTCTCACT+AGG | + | chr8_1:33033142-33033161 | None:intergenic | 40.0% | |
| !!! | GTGAGGGAATTTTTTGAGTG+TGG | - | chr8_1:33033208-33033227 | Msa1190160:intron | 40.0% |
| GAAAATGACCTTTATCCAGC+TGG | - | chr8_1:33033362-33033381 | Msa1190160:intron | 40.0% | |
| ! | TCCCTTTTCACAACCTACTA+TGG | + | chr8_1:33033464-33033483 | None:intergenic | 40.0% |
| CAGAAAGGAAGATTAGGTAG+AGG | - | chr8_1:33033510-33033529 | Msa1190160:five_prime_UTR | 40.0% | |
| AGGGAGGAACAATTTGGATT+GGG | - | chr8_1:33033530-33033549 | Msa1190160:five_prime_UTR | 40.0% | |
| ATCTTTCATGAGCGTGCATA+AGG | + | chr8_1:33033656-33033675 | None:intergenic | 40.0% | |
| GATTGCGTTTGGAAGAGAGT+GGG | - | chr8_1:33030657-33030676 | Msa1190160:three_prime_UTR | 45.0% | |
| GAGAGTGGGAAGATAGAGAA+AGG | - | chr8_1:33030671-33030690 | Msa1190160:three_prime_UTR | 45.0% | |
| AAAGGACAGAGAGAGTGAGA+AGG | - | chr8_1:33030689-33030708 | Msa1190160:three_prime_UTR | 45.0% | |
| CAGAGAGAGTGAGAAGGAAT+AGG | - | chr8_1:33030695-33030714 | Msa1190160:three_prime_UTR | 45.0% | |
| ATGCATTAAAAGCCACCGCT+TGG | - | chr8_1:33030766-33030785 | Msa1190160:three_prime_UTR | 45.0% | |
| TGTCTCATAACCGTCGTTTC+AGG | - | chr8_1:33030854-33030873 | Msa1190160:three_prime_UTR | 45.0% | |
| ! | TTTTTCGCATGAGCACTCCT+AGG | - | chr8_1:33030989-33031008 | Msa1190160:three_prime_UTR | 45.0% |
| AAGAAGGAAGACACGAACCT+AGG | + | chr8_1:33031009-33031028 | None:intergenic | 45.0% | |
| TGAGGTACGCAAGCAAAAAG+AGG | + | chr8_1:33031265-33031284 | None:intergenic | 45.0% | |
| GATGGAAGATGGTTCATGGA+TGG | - | chr8_1:33031699-33031718 | Msa1190160:CDS | 45.0% | |
| TAGAAATGGTCTCACTGCCT+TGG | - | chr8_1:33031989-33032008 | Msa1190160:CDS | 45.0% | |
| TCTCACTGCCTTGGAATTGA+AGG | - | chr8_1:33031998-33032017 | Msa1190160:CDS | 45.0% | |
| CTCACTGCCTTGGAATTGAA+GGG | - | chr8_1:33031999-33032018 | Msa1190160:CDS | 45.0% | |
| ATCTGTGCCCTTCAATTCCA+AGG | + | chr8_1:33032009-33032028 | None:intergenic | 45.0% | |
| ! | ATGTGGTGGAGGCTAAAGTA+TGG | - | chr8_1:33032081-33032100 | Msa1190160:CDS | 45.0% |
| !! | CATCTCTGGGACATCTATTG+AGG | - | chr8_1:33032148-33032167 | Msa1190160:CDS | 45.0% |
| ! | ATTTGGTGGAGCCTTCTTTC+AGG | + | chr8_1:33032278-33032297 | None:intergenic | 45.0% |
| GGTCTGCAAACATCATTTGG+TGG | + | chr8_1:33032292-33032311 | None:intergenic | 45.0% | |
| CACGGTCTGCAAACATCATT+TGG | + | chr8_1:33032295-33032314 | None:intergenic | 45.0% | |
| CGGTAGTGACTGTACAGAAT+TGG | - | chr8_1:33032357-33032376 | Msa1190160:CDS | 45.0% | |
| CTGTACAGAATTGGGCAGAA+AGG | - | chr8_1:33032366-33032385 | Msa1190160:CDS | 45.0% | |
| GTACAGAATTGGGCAGAAAG+GGG | - | chr8_1:33032368-33032387 | Msa1190160:CDS | 45.0% | |
| !! | CCCTTGTGTTGATAGTTGCA+TGG | + | chr8_1:33032484-33032503 | None:intergenic | 45.0% |
| AAGGGTTGACCAAGCATACA+TGG | - | chr8_1:33032499-33032518 | Msa1190160:intron | 45.0% | |
| !! | CTCCGGTTCTGAACTAATTG+GGG | + | chr8_1:33032650-33032669 | None:intergenic | 45.0% |
| !! | GCTCCGGTTCTGAACTAATT+GGG | + | chr8_1:33032651-33032670 | None:intergenic | 45.0% |
| AGTAGAGAGAAGATCATGCG+AGG | - | chr8_1:33032702-33032721 | Msa1190160:CDS | 45.0% | |
| AGAGAAGATCATGCGAGGTA+TGG | - | chr8_1:33032707-33032726 | Msa1190160:CDS | 45.0% | |
| CTATGCACTGAAGACAGACA+AGG | - | chr8_1:33032843-33032862 | Msa1190160:intron | 45.0% | |
| TCGGAATGTTCTCATCACCT+CGG | + | chr8_1:33032877-33032896 | None:intergenic | 45.0% | |
| TGAGAACATTCCGAGAGAAC+GGG | - | chr8_1:33032883-33032902 | Msa1190160:intron | 45.0% | |
| AACATTTGCAGCCAAGTCTC+CGG | + | chr8_1:33032940-33032959 | None:intergenic | 45.0% | |
| GAGAGGGAAGATCAATCAGT+TGG | - | chr8_1:33033083-33033102 | Msa1190160:intron | 45.0% | |
| GATCAATCAGTTGGAGTTGG+AGG | - | chr8_1:33033092-33033111 | Msa1190160:intron | 45.0% | |
| TCAATCAGTTGGAGTTGGAG+GGG | - | chr8_1:33033094-33033113 | Msa1190160:intron | 45.0% | |
| CAAAGCCCAAACTTGAAGCA+AGG | + | chr8_1:33033266-33033285 | None:intergenic | 45.0% | |
| AATGACCTTTATCCAGCTGG+AGG | - | chr8_1:33033365-33033384 | Msa1190160:intron | 45.0% | |
| ATGACCTTTATCCAGCTGGA+GGG | - | chr8_1:33033366-33033385 | Msa1190160:intron | 45.0% | |
| ! | GATTCTTTGGTGGCACAGAA+AGG | - | chr8_1:33033495-33033514 | Msa1190160:five_prime_UTR | 45.0% |
| GTGGCACAGAAAGGAAGATT+AGG | - | chr8_1:33033504-33033523 | Msa1190160:five_prime_UTR | 45.0% | |
| AAGGAAGATTAGGTAGAGGG+AGG | - | chr8_1:33033514-33033533 | Msa1190160:five_prime_UTR | 45.0% | |
| AGGTAGAGGGAGGAACAATT+TGG | - | chr8_1:33033524-33033543 | Msa1190160:five_prime_UTR | 45.0% | |
| GAGGGAGGAACAATTTGGAT+TGG | - | chr8_1:33033529-33033548 | Msa1190160:five_prime_UTR | 45.0% | |
| !! | TTTAAATTAATTAAAATTTG+AGG | + | chr8_1:33031283-33031302 | None:intergenic | 5.0% |
| ATCAAGGCGAGGATTGCGTT+TGG | - | chr8_1:33030646-33030665 | Msa1190160:three_prime_UTR | 50.0% | |
| GGATTGCGTTTGGAAGAGAG+TGG | - | chr8_1:33030656-33030675 | Msa1190160:three_prime_UTR | 50.0% | |
| AGCACAGCTTCCTGAAACGA+CGG | + | chr8_1:33030867-33030886 | None:intergenic | 50.0% | |
| !! | TCGCGTTGGTCTTCTTTCTG+AGG | - | chr8_1:33032028-33032047 | Msa1190160:CDS | 50.0% |
| CACCACATCACATTGCAGCT+CGG | + | chr8_1:33032069-33032088 | None:intergenic | 50.0% | |
| !! | CGCTCCGGTTCTGAACTAAT+TGG | + | chr8_1:33032652-33032671 | None:intergenic | 50.0% |
| TGAATTACACGATGGCGCTC+CGG | + | chr8_1:33032667-33032686 | None:intergenic | 50.0% | |
| GTCTCCGGTGGTAGTTATGT+CGG | + | chr8_1:33032925-33032944 | None:intergenic | 50.0% | |
| CATAACTACCACCGGAGACT+TGG | - | chr8_1:33032926-33032945 | Msa1190160:CDS | 50.0% | |
| TTGGTCAGCTGGGTATCCAA+TGG | + | chr8_1:33032979-33032998 | None:intergenic | 50.0% | |
| ! | GGGGCAGTGTTATTGTCTCT+TGG | - | chr8_1:33033113-33033132 | Msa1190160:intron | 50.0% |
| CTCTTGGAAGCCTAGTGAGA+AGG | - | chr8_1:33033129-33033148 | Msa1190160:intron | 50.0% | |
| ! | AGCAGAAAGATAAGGGCGTG+AGG | - | chr8_1:33033191-33033210 | Msa1190160:intron | 50.0% |
| ! | GCAGAAAGATAAGGGCGTGA+GGG | - | chr8_1:33033192-33033211 | Msa1190160:intron | 50.0% |
| ! | TTGAAGGGCACAGATCGCGT+TGG | - | chr8_1:33032014-33032033 | Msa1190160:CDS | 55.0% |
| CGAGCTGCAATGTGATGTGG+TGG | - | chr8_1:33032067-33032086 | Msa1190160:CDS | 55.0% | |
| GCTGCAATGTGATGTGGTGG+AGG | - | chr8_1:33032070-33032089 | Msa1190160:CDS | 55.0% | |
| ! | CGTGCCGACATAACTACCAC+CGG | - | chr8_1:33032918-33032937 | Msa1190160:CDS | 55.0% |
| ATTTGCAGCCAAGTCTCCGG+TGG | + | chr8_1:33032937-33032956 | None:intergenic | 55.0% | |
| CCATCCCTCCAGCTGGATAA+AGG | + | chr8_1:33033373-33033392 | None:intergenic | 55.0% | |
| CCTTTATCCAGCTGGAGGGA+TGG | - | chr8_1:33033370-33033389 | Msa1190160:intron | 55.0% | |
| GGCCGAGCTGCAATGTGATG+TGG | - | chr8_1:33032064-33032083 | Msa1190160:CDS | 60.0% | |
| CAGACAAGGGCTTCTCGCCG+AGG | - | chr8_1:33032857-33032876 | Msa1190160:intron | 65.0% | |
| AGAGGGTCCATCCCTCCAGC+TGG | + | chr8_1:33033380-33033399 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 33030638 | 33033777 | 33030638 | ID=Msa1190160;Name=Msa1190160 |
| chr8_1 | mRNA | 33030638 | 33033777 | 33030638 | ID=Msa1190160-mRNA-1;Parent=Msa1190160;Name=Msa1190160-mRNA-1;_AED=0.07;_eAED=0.07;_QI=311|1|1|1|1|1|7|587|441 |
| chr8_1 | exon | 33030638 | 33031587 | 33030638 | ID=Msa1190160-mRNA-1:exon:11142;Parent=Msa1190160-mRNA-1 |
| chr8_1 | exon | 33031692 | 33031796 | 33031692 | ID=Msa1190160-mRNA-1:exon:11141;Parent=Msa1190160-mRNA-1 |
| chr8_1 | exon | 33031895 | 33032461 | 33031895 | ID=Msa1190160-mRNA-1:exon:11140;Parent=Msa1190160-mRNA-1 |
| chr8_1 | exon | 33032546 | 33032613 | 33032546 | ID=Msa1190160-mRNA-1:exon:11139;Parent=Msa1190160-mRNA-1 |
| chr8_1 | exon | 33032695 | 33032809 | 33032695 | ID=Msa1190160-mRNA-1:exon:11138;Parent=Msa1190160-mRNA-1 |
| chr8_1 | exon | 33032905 | 33032950 | 33032905 | ID=Msa1190160-mRNA-1:exon:11137;Parent=Msa1190160-mRNA-1 |
| chr8_1 | exon | 33033405 | 33033777 | 33033405 | ID=Msa1190160-mRNA-1:exon:11136;Parent=Msa1190160-mRNA-1 |
| chr8_1 | five_prime_UTR | 33033467 | 33033777 | 33033467 | ID=Msa1190160-mRNA-1:five_prime_utr;Parent=Msa1190160-mRNA-1 |
| chr8_1 | CDS | 33033405 | 33033466 | 33033405 | ID=Msa1190160-mRNA-1:cds;Parent=Msa1190160-mRNA-1 |
| chr8_1 | CDS | 33032905 | 33032950 | 33032905 | ID=Msa1190160-mRNA-1:cds;Parent=Msa1190160-mRNA-1 |
| chr8_1 | CDS | 33032695 | 33032809 | 33032695 | ID=Msa1190160-mRNA-1:cds;Parent=Msa1190160-mRNA-1 |
| chr8_1 | CDS | 33032546 | 33032613 | 33032546 | ID=Msa1190160-mRNA-1:cds;Parent=Msa1190160-mRNA-1 |
| chr8_1 | CDS | 33031895 | 33032461 | 33031895 | ID=Msa1190160-mRNA-1:cds;Parent=Msa1190160-mRNA-1 |
| chr8_1 | CDS | 33031692 | 33031796 | 33031692 | ID=Msa1190160-mRNA-1:cds;Parent=Msa1190160-mRNA-1 |
| chr8_1 | CDS | 33031225 | 33031587 | 33031225 | ID=Msa1190160-mRNA-1:cds;Parent=Msa1190160-mRNA-1 |
| chr8_1 | three_prime_UTR | 33030638 | 33031224 | 33030638 | ID=Msa1190160-mRNA-1:three_prime_utr;Parent=Msa1190160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
