Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427180 | AES67610.1 | 96.503 | 286 | 10 | 0 | 1 | 286 | 1 | 286 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427180 | G7IHP7 | 96.503 | 286 | 10 | 0 | 1 | 286 | 1 | 286 | 0.0 | 575 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016440 | Msa1427180 | -0.802260 | 6.103555e-49 | -8.615850e-47 |
| Msa0021980 | Msa1427180 | 0.836521 | 8.911043e-57 | -8.615850e-47 |
| Msa0041780 | Msa1427180 | 0.822406 | 2.409057e-53 | -8.615850e-47 |
| Msa0045620 | Msa1427180 | -0.821217 | 4.540081e-53 | -8.615850e-47 |
| Msa0050320 | Msa1427180 | 0.810207 | 1.292543e-50 | -8.615850e-47 |
| Msa0085580 | Msa1427180 | 0.815982 | 6.992836e-52 | -8.615850e-47 |
| Msa0091090 | Msa1427180 | 0.822245 | 2.625865e-53 | -8.615850e-47 |
| Msa0096570 | Msa1427180 | 0.803783 | 2.956486e-49 | -8.615850e-47 |
| Msa0117300 | Msa1427180 | 0.821578 | 3.748627e-53 | -8.615850e-47 |
| Msa1347610 | Msa1427180 | -0.814156 | 1.778480e-51 | -8.615850e-47 |
| Msa1353280 | Msa1427180 | 0.808289 | 3.332769e-50 | -8.615850e-47 |
| Msa1357720 | Msa1427180 | 0.803327 | 3.675130e-49 | -8.615850e-47 |
| Msa1368660 | Msa1427180 | 0.826936 | 2.063839e-54 | -8.615850e-47 |
| Msa1370630 | Msa1427180 | 0.822469 | 2.329257e-53 | -8.615850e-47 |
| Msa1370930 | Msa1427180 | -0.802759 | 4.816961e-49 | -8.615850e-47 |
| Msa1371800 | Msa1427180 | -0.822237 | 2.636901e-53 | -8.615850e-47 |
| Msa1376310 | Msa1427180 | -0.821208 | 4.561527e-53 | -8.615850e-47 |
| Msa1388270 | Msa1427180 | 0.819026 | 1.441369e-52 | -8.615850e-47 |
| Msa1401000 | Msa1427180 | 0.836006 | 1.204796e-56 | -8.615850e-47 |
| Msa1403950 | Msa1427180 | 0.811438 | 6.999715e-51 | -8.615850e-47 |
| Msa1407200 | Msa1427180 | 0.829389 | 5.290827e-55 | -8.615850e-47 |
| Msa1409050 | Msa1427180 | 0.832045 | 1.182454e-55 | -8.615850e-47 |
| Msa1409760 | Msa1427180 | 0.831718 | 1.424368e-55 | -8.615850e-47 |
| Msa1413900 | Msa1427180 | 0.801804 | 7.573863e-49 | -8.615850e-47 |
| Msa1427180 | Msa1428560 | 0.813793 | 2.138143e-51 | -8.615850e-47 |
| Msa1427180 | Msa1446220 | 0.807731 | 4.379459e-50 | -8.615850e-47 |
| Msa1427180 | Msa1450630 | 0.810191 | 1.303112e-50 | -8.615850e-47 |
| Msa1427180 | Msa1452200 | 0.846875 | 1.649708e-59 | -8.615850e-47 |
| Msa1427180 | Msa1452790 | 0.811648 | 6.301882e-51 | -8.615850e-47 |
| Msa1427180 | Msa1459630 | 0.822438 | 2.368223e-53 | -8.615850e-47 |
| Msa1427180 | Msa1460970 | -0.830922 | 2.235611e-55 | -8.615850e-47 |
| Msa0604640 | Msa1427180 | 0.840567 | 8.046964e-58 | -8.615850e-47 |
| Msa0608940 | Msa1427180 | 0.811086 | 8.344836e-51 | -8.615850e-47 |
| Msa0621780 | Msa1427180 | 0.810423 | 1.161075e-50 | -8.615850e-47 |
| Msa0623310 | Msa1427180 | -0.817704 | 2.871840e-52 | -8.615850e-47 |
| Msa0623360 | Msa1427180 | 0.844291 | 8.278457e-59 | -8.615850e-47 |
| Msa0630850 | Msa1427180 | 0.850480 | 1.652779e-60 | -8.615850e-47 |
| Msa0643020 | Msa1427180 | -0.824176 | 9.301174e-54 | -8.615850e-47 |
| Msa0655610 | Msa1427180 | 0.803653 | 3.145598e-49 | -8.615850e-47 |
| Msa0681880 | Msa1427180 | 0.847088 | 1.442526e-59 | -8.615850e-47 |
| Msa0682730 | Msa1427180 | -0.805097 | 1.573849e-49 | -8.615850e-47 |
| Msa0685390 | Msa1427180 | 0.800403 | 1.465388e-48 | -8.615850e-47 |
| Msa0697600 | Msa1427180 | 0.811042 | 8.532953e-51 | -8.615850e-47 |
| Msa0702310 | Msa1427180 | 0.810105 | 1.359641e-50 | -8.615850e-47 |
| Msa0702620 | Msa1427180 | 0.802846 | 4.622462e-49 | -8.615850e-47 |
| Msa0704780 | Msa1427180 | 0.883643 | 3.773075e-71 | -8.615850e-47 |
| Msa0705050 | Msa1427180 | 0.843473 | 1.370991e-58 | -8.615850e-47 |
| Msa0714060 | Msa1427180 | 0.818696 | 1.712953e-52 | -8.615850e-47 |
| Msa0714200 | Msa1427180 | 0.816595 | 5.099960e-52 | -8.615850e-47 |
| Msa0715510 | Msa1427180 | -0.801467 | 8.882590e-49 | -8.615850e-47 |
| Msa0756440 | Msa1427180 | 0.844413 | 7.677984e-59 | -8.615850e-47 |
| Msa0770020 | Msa1427180 | 0.802261 | 6.099892e-49 | -8.615850e-47 |
| Msa0775420 | Msa1427180 | 0.828844 | 7.171529e-55 | -8.615850e-47 |
| Msa0795710 | Msa1427180 | 0.810873 | 9.282130e-51 | -8.615850e-47 |
| Msa0796460 | Msa1427180 | 0.801195 | 1.009511e-48 | -8.615850e-47 |
| Msa0807980 | Msa1427180 | 0.817984 | 2.483038e-52 | -8.615850e-47 |
| Msa0812800 | Msa1427180 | 0.821066 | 4.918569e-53 | -8.615850e-47 |
| Msa0813630 | Msa1427180 | 0.812910 | 3.341815e-51 | -8.615850e-47 |
| Msa0815590 | Msa1427180 | -0.801668 | 8.076511e-49 | -8.615850e-47 |
| Msa0815950 | Msa1427180 | 0.800442 | 1.438797e-48 | -8.615850e-47 |
| Msa0834200 | Msa1427180 | 0.826347 | 2.851092e-54 | -8.615850e-47 |
| Msa0834240 | Msa1427180 | 0.830895 | 2.269258e-55 | -8.615850e-47 |
| Msa0835550 | Msa1427180 | 0.853696 | 2.014042e-61 | -8.615850e-47 |
| Msa0154720 | Msa1427180 | 0.809194 | 2.134693e-50 | -8.615850e-47 |
| Msa0160650 | Msa1427180 | 0.837655 | 4.571822e-57 | -8.615850e-47 |
| Msa0183200 | Msa1427180 | 0.811006 | 8.687275e-51 | -8.615850e-47 |
| Msa0188500 | Msa1427180 | 0.881457 | 2.361872e-70 | -8.615850e-47 |
| Msa0200840 | Msa1427180 | 0.800666 | 1.295071e-48 | -8.615850e-47 |
| Msa0200870 | Msa1427180 | 0.810127 | 1.344892e-50 | -8.615850e-47 |
| Msa0216550 | Msa1427180 | 0.801390 | 9.211444e-49 | -8.615850e-47 |
| Msa0220410 | Msa1427180 | 0.805974 | 1.029954e-49 | -8.615850e-47 |
| Msa0223190 | Msa1427180 | 0.993506 | 3.273924e-200 | -8.615850e-47 |
| Msa0225880 | Msa1427180 | 0.834302 | 3.242162e-56 | -8.615850e-47 |
| Msa0229750 | Msa1427180 | 0.804505 | 2.092219e-49 | -8.615850e-47 |
| Msa0230980 | Msa1427180 | 0.859870 | 3.065564e-63 | -8.615850e-47 |
| Msa1229770 | Msa1427180 | 0.811783 | 5.889194e-51 | -8.615850e-47 |
| Msa1237260 | Msa1427180 | 0.811578 | 6.527218e-51 | -8.615850e-47 |
| Msa1240060 | Msa1427180 | -0.862704 | 4.196700e-64 | -8.615850e-47 |
| Msa1242990 | Msa1427180 | 0.839229 | 1.795491e-57 | -8.615850e-47 |
| Msa1263610 | Msa1427180 | 0.841085 | 5.885421e-58 | -8.615850e-47 |
| Msa1264140 | Msa1427180 | 0.815264 | 1.010536e-51 | -8.615850e-47 |
| Msa1266720 | Msa1427180 | 0.834252 | 3.337878e-56 | -8.615850e-47 |
| Msa1281370 | Msa1427180 | -0.849841 | 2.495332e-60 | -8.615850e-47 |
| Msa1302780 | Msa1427180 | 0.810608 | 1.059249e-50 | -8.615850e-47 |
| Msa1306700 | Msa1427180 | 0.832656 | 8.346851e-56 | -8.615850e-47 |
| Msa1320530 | Msa1427180 | -0.869500 | 2.955478e-66 | -8.615850e-47 |
| Msa1323920 | Msa1427180 | 0.821272 | 4.408998e-53 | -8.615850e-47 |
| Msa1328630 | Msa1427180 | 0.839567 | 1.467194e-57 | -8.615850e-47 |
| Msa1328720 | Msa1427180 | 0.838808 | 2.307141e-57 | -8.615850e-47 |
| Msa1342400 | Msa1427180 | 0.852287 | 5.096903e-61 | -8.615850e-47 |
| Msa1343480 | Msa1427180 | 0.818346 | 2.056492e-52 | -8.615850e-47 |
| Msa0372990 | Msa1427180 | 0.819185 | 1.326470e-52 | -8.615850e-47 |
| Msa0378670 | Msa1427180 | 0.821738 | 3.442366e-53 | -8.615850e-47 |
| Msa0378700 | Msa1427180 | 0.822048 | 2.918269e-53 | -8.615850e-47 |
| Msa0379500 | Msa1427180 | 0.806023 | 1.005925e-49 | -8.615850e-47 |
| Msa0380590 | Msa1427180 | -0.804862 | 1.761754e-49 | -8.615850e-47 |
| Msa0401570 | Msa1427180 | 0.800950 | 1.132908e-48 | -8.615850e-47 |
| Msa0403720 | Msa1427180 | 0.847044 | 1.483310e-59 | -8.615850e-47 |
| Msa0404180 | Msa1427180 | 0.811495 | 6.803599e-51 | -8.615850e-47 |
| Msa0408160 | Msa1427180 | 0.815418 | 9.339425e-52 | -8.615850e-47 |
| Msa0416390 | Msa1427180 | -0.820366 | 7.124228e-53 | -8.615850e-47 |
| Msa0421390 | Msa1427180 | 0.837833 | 4.115671e-57 | -8.615850e-47 |
| Msa0428330 | Msa1427180 | 0.812384 | 4.356825e-51 | -8.615850e-47 |
| Msa0431940 | Msa1427180 | 0.828627 | 8.093308e-55 | -8.615850e-47 |
| Msa0436600 | Msa1427180 | 0.825868 | 3.706691e-54 | -8.615850e-47 |
| Msa0436610 | Msa1427180 | 0.806869 | 6.671417e-50 | -8.615850e-47 |
| Msa0448400 | Msa1427180 | 0.835594 | 1.532039e-56 | -8.615850e-47 |
| Msa0456480 | Msa1427180 | 0.819100 | 1.386842e-52 | -8.615850e-47 |
| Msa0462980 | Msa1427180 | -0.833376 | 5.525101e-56 | -8.615850e-47 |
| Msa0481050 | Msa1427180 | 0.800032 | 1.742965e-48 | -8.615850e-47 |
| Msa0986560 | Msa1427180 | 0.824541 | 7.635025e-54 | -8.615850e-47 |
| Msa0995220 | Msa1427180 | 0.804702 | 1.903277e-49 | -8.615850e-47 |
| Msa0999590 | Msa1427180 | 0.841312 | 5.128208e-58 | -8.615850e-47 |
| Msa1026710 | Msa1427180 | -0.805827 | 1.106101e-49 | -8.615850e-47 |
| Msa1031530 | Msa1427180 | 0.800970 | 1.122549e-48 | -8.615850e-47 |
| Msa1035040 | Msa1427180 | -0.804452 | 2.146029e-49 | -8.615850e-47 |
| Msa1038110 | Msa1427180 | 0.843494 | 1.354103e-58 | -8.615850e-47 |
| Msa1071310 | Msa1427180 | 0.831334 | 1.771045e-55 | -8.615850e-47 |
| Msa1081530 | Msa1427180 | 0.803897 | 2.799111e-49 | -8.615850e-47 |
| Msa1101610 | Msa1427180 | 0.808481 | 3.032800e-50 | -8.615850e-47 |
| Msa0243820 | Msa1427180 | 0.818542 | 1.856107e-52 | -8.615850e-47 |
| Msa0256410 | Msa1427180 | 0.818032 | 2.421756e-52 | -8.615850e-47 |
| Msa0260470 | Msa1427180 | 0.833957 | 3.956438e-56 | -8.615850e-47 |
| Msa0264240 | Msa1427180 | 0.833497 | 5.154917e-56 | -8.615850e-47 |
| Msa0264420 | Msa1427180 | 0.992058 | 4.611730e-191 | -8.615850e-47 |
| Msa0270460 | Msa1427180 | 0.860901 | 1.495383e-63 | -8.615850e-47 |
| Msa0274950 | Msa1427180 | -0.816760 | 4.683272e-52 | -8.615850e-47 |
| Msa0302310 | Msa1427180 | 0.985004 | 3.092050e-162 | -8.615850e-47 |
| Msa0304110 | Msa1427180 | 0.825457 | 4.639429e-54 | -8.615850e-47 |
| Msa0309060 | Msa1427180 | 0.844869 | 5.787141e-59 | -8.615850e-47 |
| Msa0338680 | Msa1427180 | -0.808933 | 2.427842e-50 | -8.615850e-47 |
| Msa0339560 | Msa1427180 | 0.848316 | 6.624071e-60 | -8.615850e-47 |
| Msa0339670 | Msa1427180 | 0.989994 | 1.422902e-180 | -8.615850e-47 |
| Msa0341190 | Msa1427180 | 0.815089 | 1.105195e-51 | -8.615850e-47 |
| Msa0352640 | Msa1427180 | 0.827206 | 1.777826e-54 | -8.615850e-47 |
| Msa0364010 | Msa1427180 | 0.837081 | 6.413488e-57 | -8.615850e-47 |
| Msa1129660 | Msa1427180 | 0.831728 | 1.416242e-55 | -8.615850e-47 |
| Msa1188820 | Msa1427180 | 0.815206 | 1.040889e-51 | -8.615850e-47 |
| Msa1194170 | Msa1427180 | -0.804949 | 1.689594e-49 | -8.615850e-47 |
| Msa1199580 | Msa1427180 | 0.839487 | 1.538539e-57 | -8.615850e-47 |
| Msa1211260 | Msa1427180 | 0.803546 | 3.310247e-49 | -8.615850e-47 |
| Msa1211390 | Msa1427180 | 0.805404 | 1.357071e-49 | -8.615850e-47 |
| Msa1216700 | Msa1427180 | 0.802084 | 6.634319e-49 | -8.615850e-47 |
| Msa1223510 | Msa1427180 | 0.808739 | 2.670423e-50 | -8.615850e-47 |
| Msa0496460 | Msa1427180 | 0.860287 | 2.294349e-63 | -8.615850e-47 |
| Msa0496470 | Msa1427180 | 0.849664 | 2.797291e-60 | -8.615850e-47 |
| Msa0496570 | Msa1427180 | 0.856704 | 2.687157e-62 | -8.615850e-47 |
| Msa0500420 | Msa1427180 | -0.801526 | 8.637897e-49 | -8.615850e-47 |
| Msa0500490 | Msa1427180 | 0.805615 | 1.225258e-49 | -8.615850e-47 |
| Msa0508580 | Msa1427180 | -0.833797 | 4.338263e-56 | -8.615850e-47 |
| Msa0520810 | Msa1427180 | 0.839437 | 1.585606e-57 | -8.615850e-47 |
| Msa0521940 | Msa1427180 | -0.824278 | 8.801746e-54 | -8.615850e-47 |
| Msa0546370 | Msa1427180 | 0.847916 | 8.544672e-60 | -8.615850e-47 |
| Msa0547200 | Msa1427180 | -0.810097 | 1.365651e-50 | -8.615850e-47 |
| Msa0549330 | Msa1427180 | 0.823505 | 1.336022e-53 | -8.615850e-47 |
| Msa0555510 | Msa1427180 | 0.804386 | 2.214548e-49 | -8.615850e-47 |
| Msa0560370 | Msa1427180 | 0.822143 | 2.773072e-53 | -8.615850e-47 |
| Msa0568290 | Msa1427180 | 0.801450 | 8.951471e-49 | -8.615850e-47 |
| Msa0580540 | Msa1427180 | 0.818233 | 2.181331e-52 | -8.615850e-47 |
| Msa0601920 | Msa1427180 | -0.814516 | 1.480618e-51 | -8.615850e-47 |
| Msa0846300 | Msa1427180 | 0.809464 | 1.867716e-50 | -8.615850e-47 |
| Msa0853150 | Msa1427180 | 0.800393 | 1.471876e-48 | -8.615850e-47 |
| Msa0861480 | Msa1427180 | 0.825527 | 4.464364e-54 | -8.615850e-47 |
| Msa0861560 | Msa1427180 | 0.830597 | 2.685489e-55 | -8.615850e-47 |
| Msa0871310 | Msa1427180 | 0.822513 | 2.275659e-53 | -8.615850e-47 |
| Msa0899730 | Msa1427180 | 0.805093 | 1.576717e-49 | -8.615850e-47 |
| Msa0927890 | Msa1427180 | 0.804109 | 2.529543e-49 | -8.615850e-47 |
| Msa0975560 | Msa1427180 | 0.825872 | 3.699537e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427180 | MtrunA17_Chr2g0328301 | 96.503 | 286 | 10 | 0 | 1 | 286 | 1 | 286 | 0.0 | 575 |
| Msa1427180 | MtrunA17_Chr4g0031681 | 46.667 | 210 | 47 | 5 | 96 | 286 | 261 | 424 | 3.45e-51 | 173 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427180 | AT5G59400.1 | 57.931 | 290 | 111 | 4 | 7 | 285 | 6 | 295 | 7.72e-117 | 338 |
| Msa1427180 | AT5G59400.2 | 54.237 | 236 | 97 | 4 | 7 | 231 | 6 | 241 | 1.14e-81 | 247 |
Find 81 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACGGTTGTTTCTGATTT+TGG | 0.096153 | tig0026171:+25935 | None:intergenic |
| TATCAAAATGCATTTAATTT+AGG | 0.174239 | tig0026171:-24739 | Msa1427180:CDS |
| TTTGGTAGACAATGGGTTTA+TGG | 0.211478 | tig0026171:-23518 | Msa1427180:CDS |
| ACACATGGCACTTTGCTCTA+TGG | 0.252132 | tig0026171:+24040 | None:intergenic |
| CTAACCTCTTCTCCACAATT+TGG | 0.256151 | tig0026171:+24444 | None:intergenic |
| CCATGTGTGTGAATGCTTAT+TGG | 0.266944 | tig0026171:-24025 | Msa1427180:CDS |
| AAAGAGCTTCAAGGGTTTCT+TGG | 0.284671 | tig0026171:+25817 | None:intergenic |
| CAGCAATCAACTTCAAGATT+TGG | 0.317400 | tig0026171:-23536 | Msa1427180:CDS |
| TAGACATTTAAATGTAATCT+TGG | 0.329454 | tig0026171:-23241 | Msa1427180:three_prime_UTR |
| CCGACAGTTAAAACACTTCA+AGG | 0.341879 | tig0026171:-24507 | Msa1427180:intron |
| TTACAGCTCCCTTTGGCGTC+TGG | 0.345446 | tig0026171:+23472 | None:intergenic |
| TTGGTAGACAATGGGTTTAT+GGG | 0.350926 | tig0026171:-23517 | Msa1427180:CDS |
| TTTCATCTTCCTTCTCTCTT+CGG | 0.366302 | tig0026171:-25911 | Msa1427180:CDS |
| GGTGAATACCATTATCTTCA+TGG | 0.383957 | tig0026171:-24671 | Msa1427180:CDS |
| CCTTGAAGCTCTTTATTCTC+AGG | 0.389886 | tig0026171:-25808 | Msa1427180:intron |
| CACATGGCACTTTGCTCTAT+GGG | 0.391842 | tig0026171:+24041 | None:intergenic |
| AAGAGCTTCAAGGGTTTCTT+GGG | 0.410172 | tig0026171:+25818 | None:intergenic |
| ACCGAGTGCCATGAAGATAA+TGG | 0.411246 | tig0026171:+24663 | None:intergenic |
| CCTGAGAATAAAGAGCTTCA+AGG | 0.416387 | tig0026171:+25808 | None:intergenic |
| AGAAAATTTACAGCTCCCTT+TGG | 0.418396 | tig0026171:+23465 | None:intergenic |
| GAATGACTTGGCAGCACTAA+AGG | 0.426467 | tig0026171:-24475 | Msa1427180:CDS |
| TCAAACATAAACCAACTTGT+AGG | 0.432749 | tig0026171:-23208 | None:intergenic |
| TTACCTGAGGCAGAAGCAAC+CGG | 0.444107 | tig0026171:+24625 | None:intergenic |
| AGCAACAGCAGCACCGCTTT+AGG | 0.444700 | tig0026171:-25981 | Msa1427180:CDS |
| TATCCGGTTGCTTCTGCCTC+AGG | 0.446058 | tig0026171:-24628 | Msa1427180:intron |
| TTGGTAGTTCAGCAATGGTT+GGG | 0.456189 | tig0026171:-24789 | Msa1427180:CDS |
| TTCAAGATTTGGTAGACAAT+GGG | 0.459540 | tig0026171:-23525 | Msa1427180:CDS |
| TTTGGTAGTTCAGCAATGGT+TGG | 0.463462 | tig0026171:-24790 | Msa1427180:CDS |
| GAGGACTTAGTTGTGATGCT+TGG | 0.477149 | tig0026171:+24701 | None:intergenic |
| TGCATTTGGTAGTTCAGCAA+TGG | 0.480534 | tig0026171:-24794 | Msa1427180:CDS |
| GGTAACAGTTGAAGCTTAAG+TGG | 0.481788 | tig0026171:-25454 | Msa1427180:intron |
| TTTAATTTAGGATTATCATA+TGG | 0.482685 | tig0026171:-24727 | Msa1427180:CDS |
| CTTCAAGATTTGGTAGACAA+TGG | 0.486758 | tig0026171:-23526 | Msa1427180:CDS |
| CAGTTGAAGCTTAAGTGGTA+TGG | 0.493314 | tig0026171:-25449 | Msa1427180:CDS |
| AGGGCAGGAAGATCTGTCTA+TGG | 0.493392 | tig0026171:-24851 | Msa1427180:intron |
| CTGAGAATAAAGAGCTTCAA+GGG | 0.499082 | tig0026171:+25809 | None:intergenic |
| ACCATTATCTTCATGGCACT+CGG | 0.500659 | tig0026171:-24664 | Msa1427180:CDS |
| GCGTAAATCCAGACGCCAAA+GGG | 0.509490 | tig0026171:-23480 | Msa1427180:CDS |
| AATGACTTGGCAGCACTAAA+GGG | 0.512532 | tig0026171:-24474 | Msa1427180:CDS |
| GGTCCATCTTGTATATATGT+TGG | 0.512587 | tig0026171:-25858 | Msa1427180:CDS |
| TTAAAACACTTCAAGGCTTG+TGG | 0.533051 | tig0026171:-24500 | Msa1427180:CDS |
| GGAGTTGATATGTCAATCAC+TGG | 0.535633 | tig0026171:-23324 | Msa1427180:three_prime_UTR |
| TTATGTTATTACCTCAACTT+CGG | 0.535679 | tig0026171:+23993 | None:intergenic |
| AGGATACTTCACAACTGACT+TGG | 0.542875 | tig0026171:+25424 | None:intergenic |
| TCTTGGGTGGCAGTTTGAAG+AGG | 0.543205 | tig0026171:+25834 | None:intergenic |
| AGGCTTGTGGAGGAATGACT+TGG | 0.547292 | tig0026171:-24487 | Msa1427180:CDS |
| GGAATTTCGCACCGAAGTTG+AGG | 0.547885 | tig0026171:-24004 | Msa1427180:intron |
| ACCTGCGACGACCGTCCTCA+TGG | 0.549456 | tig0026171:-25879 | Msa1427180:CDS |
| AACATGTCATCAACTATCAA+AGG | 0.550328 | tig0026171:+25574 | None:intergenic |
| GGCAGAGATCCGAAGAGAGA+AGG | 0.551019 | tig0026171:+25902 | None:intergenic |
| ACCATGAGGACGGTCGTCGC+AGG | 0.551432 | tig0026171:+25878 | None:intergenic |
| GCAGCACCGCTTTAGGTGGA+TGG | 0.553063 | tig0026171:-25974 | Msa1427180:CDS |
| GGACCAACATATATACAAGA+TGG | 0.557422 | tig0026171:+25855 | None:intergenic |
| AGCTTCAAGGGTTTCTTGGG+TGG | 0.559365 | tig0026171:+25821 | None:intergenic |
| ATGGTATTCACCATGAAAAG+AGG | 0.559608 | tig0026171:+24682 | None:intergenic |
| ATGTCCAAATTGTGGAGAAG+AGG | 0.561187 | tig0026171:-24448 | Msa1427180:intron |
| AAGGGTTCATGTCCAAATTG+TGG | 0.563160 | tig0026171:-24456 | Msa1427180:CDS |
| CACCGTCCATCCACCTAAAG+CGG | 0.577414 | tig0026171:+25968 | None:intergenic |
| CACCGCTTTAGGTGGATGGA+CGG | 0.580229 | tig0026171:-25970 | Msa1427180:CDS |
| ACACTTATAGTTAGCAAGGA+AGG | 0.581147 | tig0026171:-23345 | Msa1427180:three_prime_UTR |
| TGCGTAAATCCAGACGCCAA+AGG | 0.585411 | tig0026171:-23481 | Msa1427180:CDS |
| ACAAACACATATGAACATGT+TGG | 0.585580 | tig0026171:-26012 | Msa1427180:exon |
| TGCATTTGTAAGAACAGACA+AGG | 0.588695 | tig0026171:-24076 | Msa1427180:CDS |
| TTGTACACTTATAGTTAGCA+AGG | 0.588786 | tig0026171:-23349 | Msa1427180:three_prime_UTR |
| AAACACTTCAAGGCTTGTGG+AGG | 0.598739 | tig0026171:-24497 | Msa1427180:CDS |
| ATGAGGACGGTCGTCGCAGG+TGG | 0.602794 | tig0026171:+25881 | None:intergenic |
| AAGTTGATGCTGCAAAACAT+TGG | 0.603833 | tig0026171:+24766 | None:intergenic |
| AACAGCAGCACCGCTTTAGG+TGG | 0.608229 | tig0026171:-25978 | Msa1427180:CDS |
| CTAACTATAAGTGTACAAGT+TGG | 0.614393 | tig0026171:+23354 | None:intergenic |
| ATCCTCGTTGCAGTATCAGA+AGG | 0.615303 | tig0026171:-25406 | Msa1427180:CDS |
| CCAATAAGCATTCACACACA+TGG | 0.617576 | tig0026171:+24025 | None:intergenic |
| AATCACCTCAGCATCAGCAT+AGG | 0.620614 | tig0026171:+25376 | None:intergenic |
| TGACATGTTTGATAGAGTAG+AGG | 0.624434 | tig0026171:-25560 | Msa1427180:intron |
| GCAAGGGATGCATATTACAA+AGG | 0.629849 | tig0026171:-25601 | Msa1427180:CDS |
| GGCGTCTGGATTTACGCACA+AGG | 0.641633 | tig0026171:+23486 | None:intergenic |
| TACAAGATGGACCATGAGGA+CGG | 0.641757 | tig0026171:+25868 | None:intergenic |
| ATCAACCTATGCTGATGCTG+AGG | 0.651620 | tig0026171:-25381 | Msa1427180:intron |
| ACATGGCACTTTGCTCTATG+GGG | 0.653009 | tig0026171:+24042 | None:intergenic |
| AGAAGGAAGATGAAACAGAA+CGG | 0.670572 | tig0026171:+25919 | None:intergenic |
| TATATACAAGATGGACCATG+AGG | 0.716840 | tig0026171:+25864 | None:intergenic |
| TGCCTTCTGATACTGCAACG+AGG | 0.764708 | tig0026171:+25404 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATAAAACTATTTTC+AGG | + | tig0026171:24130-24149 | None:intergenic | 10.0% |
| !!! | GAAAATAGTTTTATTAAAAT+TGG | - | tig0026171:24130-24149 | Msa1427180:intron | 10.0% |
| !! | ATAAAAAGTTAAAATTTGTA+AGG | + | tig0026171:24671-24690 | None:intergenic | 10.0% |
| !! | TTAAAGAAAAAATAATACTT+TGG | - | tig0026171:25400-25419 | Msa1427180:CDS | 10.0% |
| !! | TAATAATATGTGAAATTAAT+TGG | + | tig0026171:25605-25624 | None:intergenic | 10.0% |
| !!! | ATTGAGAATTATTTTAAACA+TGG | - | tig0026171:23594-23613 | Msa1427180:intron | 15.0% |
| !! | ATCTTATGTTATTCATATTA+TGG | - | tig0026171:23764-23783 | Msa1427180:intron | 15.0% |
| !!! | TTTTATTAAAATTGGTTTTG+CGG | - | tig0026171:24138-24157 | Msa1427180:intron | 15.0% |
| !! | TAATAAATATTACATTCATC+TGG | - | tig0026171:24277-24296 | Msa1427180:intron | 15.0% |
| !!! | TATCAAAATGCATTTAATTT+AGG | - | tig0026171:24500-24519 | Msa1427180:CDS | 15.0% |
| !!! | TTTAATTTAGGATTATCATA+TGG | - | tig0026171:24512-24531 | Msa1427180:intron | 15.0% |
| !! | TGTAACATAATATTAATTGA+AGG | - | tig0026171:25429-25448 | Msa1427180:CDS | 15.0% |
| !! | GTAACATAATATTAATTGAA+GGG | - | tig0026171:25430-25449 | Msa1427180:CDS | 15.0% |
| !!! | TCATTTTGAAACAATTTTTT+TGG | - | tig0026171:25503-25522 | Msa1427180:intron | 15.0% |
| !! | GAATAACATAAGATTAAGAT+CGG | + | tig0026171:23758-23777 | None:intergenic | 20.0% |
| !!! | GTTGTTTGTTTTATTGAAAA+AGG | - | tig0026171:24956-24975 | Msa1427180:intron | 20.0% |
| !! | AATAGTTGATTAGGATAATT+TGG | + | tig0026171:25367-25386 | None:intergenic | 20.0% |
| !! | AAATTATCCTAATCAACTAT+TGG | - | tig0026171:25366-25385 | Msa1427180:intron | 20.0% |
| !!! | ACTATGATTTTTCAATAGTA+AGG | - | tig0026171:25800-25819 | Msa1427180:intron | 20.0% |
| !! | TAGACATTTAAATGTAATCT+TGG | - | tig0026171:25998-26017 | Msa1427180:CDS | 20.0% |
| !!! | GAATTATTTTAAACATGGCA+TGG | - | tig0026171:23599-23618 | Msa1427180:intron | 25.0% |
| !! | TGGTGAATTTTCATCAATAA+GGG | + | tig0026171:23935-23954 | None:intergenic | 25.0% |
| !! | TTGGTGAATTTTCATCAATA+AGG | + | tig0026171:23936-23955 | None:intergenic | 25.0% |
| ! | TAAGTATAAGCAACTGAAAT+TGG | + | tig0026171:23955-23974 | None:intergenic | 25.0% |
| !!! | ATACTTAAGTTTTAGTTGCA+TGG | - | tig0026171:23968-23987 | Msa1427180:intron | 25.0% |
| ! | ATAATGCAAAGAATGCATAT+TGG | - | tig0026171:24030-24049 | Msa1427180:CDS | 25.0% |
| ! | TAATGCAAAGAATGCATATT+GGG | - | tig0026171:24031-24050 | Msa1427180:CDS | 25.0% |
| !!! | GAATGTTTTTGTTTTCGAAA+AGG | - | tig0026171:24189-24208 | Msa1427180:intron | 25.0% |
| ! | ACTACCAAATGCAAAAAATA+AGG | + | tig0026171:24438-24457 | None:intergenic | 25.0% |
| ! | TATGAAAGACTACAAAGTTT+GGG | + | tig0026171:24829-24848 | None:intergenic | 25.0% |
| ! | TTATGTTATTACCTCAACTT+CGG | + | tig0026171:25249-25268 | None:intergenic | 25.0% |
| !!! | TTCAAAATGAATGTCACTTT+CGG | + | tig0026171:25493-25512 | None:intergenic | 25.0% |
| !!! | ATTGTTTTACTTCTTGCAAA+AGG | - | tig0026171:25559-25578 | Msa1427180:intron | 25.0% |
| !!! | GATTTTTCAATAGTAAGGAA+AGG | - | tig0026171:25805-25824 | Msa1427180:intron | 25.0% |
| ACAAACACATATGAACATGT+TGG | - | tig0026171:23227-23246 | Msa1427180:three_prime_UTR | 30.0% | |
| AACATGTCATCAACTATCAA+AGG | + | tig0026171:23668-23687 | None:intergenic | 30.0% | |
| ! | AAGAAGTTAAGAAGCATATG+TGG | + | tig0026171:23726-23745 | None:intergenic | 30.0% |
| GCATTCTTTGCATTATTAAG+AGG | + | tig0026171:24026-24045 | None:intergenic | 30.0% | |
| AATGCAAAGAATGCATATTG+GGG | - | tig0026171:24032-24051 | Msa1427180:CDS | 30.0% | |
| !!! | TTTTCAGGTCTAATCAATGT+AGG | + | tig0026171:24115-24134 | None:intergenic | 30.0% |
| CAAGAATAGAGAAAAGAGAA+GGG | + | tig0026171:24334-24353 | None:intergenic | 30.0% | |
| CGTCTTAATATTGAATGATG+TGG | - | tig0026171:24361-24380 | Msa1427180:intron | 30.0% | |
| ATATTGAATGATGTGGATGT+AGG | - | tig0026171:24368-24387 | Msa1427180:intron | 30.0% | |
| TATTGAATGATGTGGATGTA+GGG | - | tig0026171:24369-24388 | Msa1427180:intron | 30.0% | |
| !!! | TGGACCTTATTTTTTGCATT+TGG | - | tig0026171:24431-24450 | Msa1427180:intron | 30.0% |
| ATATGAAAAGTAGCAGCAAA+AGG | + | tig0026171:24644-24663 | None:intergenic | 30.0% | |
| !!! | TGTTTTAACTGTCGGAAAAA+AGG | + | tig0026171:24727-24746 | None:intergenic | 30.0% |
| ATGAAAGACTACAAAGTTTG+GGG | + | tig0026171:24828-24847 | None:intergenic | 30.0% | |
| CTATGAAAGACTACAAAGTT+TGG | + | tig0026171:24830-24849 | None:intergenic | 30.0% | |
| CTTTGACTAATGATCTTGTT+TGG | - | tig0026171:24871-24890 | Msa1427180:intron | 30.0% | |
| TTGCTTATCGAATAAGTGTT+CGG | + | tig0026171:24910-24929 | None:intergenic | 30.0% | |
| TTAAAATTGTCTGAGTGAGT+TGG | - | tig0026171:25119-25138 | Msa1427180:intron | 30.0% | |
| TTCTTACAAATGCAAATACC+TGG | + | tig0026171:25157-25176 | None:intergenic | 30.0% | |
| !! | AAGCGACACTCATTTTTAAA+CGG | + | tig0026171:25284-25303 | None:intergenic | 30.0% |
| TTCATTAATCTGTGTGCAAT+TGG | + | tig0026171:25310-25329 | None:intergenic | 30.0% | |
| CAACAAACCAATAGTTGATT+AGG | + | tig0026171:25376-25395 | None:intergenic | 30.0% | |
| AAAAGGCAGTTCATAACATT+AGG | - | tig0026171:25576-25595 | Msa1427180:CDS | 30.0% | |
| ! | TTCAAGATTTGGTAGACAAT+GGG | - | tig0026171:25714-25733 | Msa1427180:intron | 30.0% |
| CTAACTATAAGTGTACAAGT+TGG | + | tig0026171:25888-25907 | None:intergenic | 30.0% | |
| TTGTACACTTATAGTTAGCA+AGG | - | tig0026171:25890-25909 | Msa1427180:CDS | 30.0% | |
| !!! | AGAACGGTTGTTTCTGATTT+TGG | + | tig0026171:23307-23326 | None:intergenic | 35.0% |
| AGAAGGAAGATGAAACAGAA+CGG | + | tig0026171:23323-23342 | None:intergenic | 35.0% | |
| TTTCATCTTCCTTCTCTCTT+CGG | - | tig0026171:23328-23347 | Msa1427180:three_prime_UTR | 35.0% | |
| TATATACAAGATGGACCATG+AGG | + | tig0026171:23378-23397 | None:intergenic | 35.0% | |
| GGTCCATCTTGTATATATGT+TGG | - | tig0026171:23381-23400 | Msa1427180:three_prime_UTR | 35.0% | |
| GGACCAACATATATACAAGA+TGG | + | tig0026171:23387-23406 | None:intergenic | 35.0% | |
| CTGAGAATAAAGAGCTTCAA+GGG | + | tig0026171:23433-23452 | None:intergenic | 35.0% | |
| GCGCTTATGCTTAATTAAGT+TGG | - | tig0026171:23521-23540 | Msa1427180:CDS | 35.0% | |
| TGATCTTTGCTAATAGGCAA+GGG | - | tig0026171:23622-23641 | Msa1427180:intron | 35.0% | |
| TGACATGTTTGATAGAGTAG+AGG | - | tig0026171:23679-23698 | Msa1427180:intron | 35.0% | |
| ! | AGAAGCATATGTGGTGAATT+GGG | + | tig0026171:23717-23736 | None:intergenic | 35.0% |
| ! | AAGAAGCATATGTGGTGAAT+TGG | + | tig0026171:23718-23737 | None:intergenic | 35.0% |
| AATGATGTTGGATCTTCATG+TGG | - | tig0026171:24057-24076 | Msa1427180:CDS | 35.0% | |
| ! | TTCATCTGGTTAGAGTGTTA+AGG | - | tig0026171:24291-24310 | Msa1427180:intron | 35.0% |
| AGAAAAGAGAAGGGAAAAAG+GGG | + | tig0026171:24325-24344 | None:intergenic | 35.0% | |
| GAGAAAAGAGAAGGGAAAAA+GGG | + | tig0026171:24326-24345 | None:intergenic | 35.0% | |
| AGAGAAAAGAGAAGGGAAAA+AGG | + | tig0026171:24327-24346 | None:intergenic | 35.0% | |
| CCAAGAATAGAGAAAAGAGA+AGG | + | tig0026171:24335-24354 | None:intergenic | 35.0% | |
| ! | CCTTCTCTTTTCTCTATTCT+TGG | - | tig0026171:24332-24351 | Msa1427180:intron | 35.0% |
| !! | AAGTTGATGCTGCAAAACAT+TGG | + | tig0026171:24476-24495 | None:intergenic | 35.0% |
| ! | AATGTTTTGCAGCATCAACT+TGG | - | tig0026171:24475-24494 | Msa1427180:CDS | 35.0% |
| ! | ACAACTAAGTCCTCTTTTCA+TGG | - | tig0026171:24547-24566 | Msa1427180:intron | 35.0% |
| ATGGTATTCACCATGAAAAG+AGG | + | tig0026171:24560-24579 | None:intergenic | 35.0% | |
| GGTGAATACCATTATCTTCA+TGG | - | tig0026171:24568-24587 | Msa1427180:intron | 35.0% | |
| ! | AGCAAAAGGATTTTTACCTG+AGG | + | tig0026171:24630-24649 | None:intergenic | 35.0% |
| !!! | CCTTGAAGTGTTTTAACTGT+CGG | + | tig0026171:24735-24754 | None:intergenic | 35.0% |
| TTAAAACACTTCAAGGCTTG+TGG | - | tig0026171:24739-24758 | Msa1427180:CDS | 35.0% | |
| TGAAAGACTACAAAGTTTGG+GGG | + | tig0026171:24827-24846 | None:intergenic | 35.0% | |
| CATAGTCTCCTTAACTTCTT+TGG | - | tig0026171:24845-24864 | Msa1427180:CDS | 35.0% | |
| CAAAGAAGCCAAAGAAGTTA+AGG | + | tig0026171:24856-24875 | None:intergenic | 35.0% | |
| TATGACAGTTAGCAATCTAG+AGG | - | tig0026171:25014-25033 | Msa1427180:intron | 35.0% | |
| ATGCAAATACCTGGAAGATA+AGG | + | tig0026171:25148-25167 | None:intergenic | 35.0% | |
| TGCATTTGTAAGAACAGACA+AGG | - | tig0026171:25163-25182 | Msa1427180:intron | 35.0% | |
| !! | GACACTCATTTTTAAACGGA+GGG | + | tig0026171:25280-25299 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | tig0026171:25529-25548 | Msa1427180:intron | 35.0% |
| CAGCAATCAACTTCAAGATT+TGG | - | tig0026171:25703-25722 | Msa1427180:intron | 35.0% | |
| ! | CTTCAAGATTTGGTAGACAA+TGG | - | tig0026171:25713-25732 | Msa1427180:intron | 35.0% |
| ! | TTTGGTAGACAATGGGTTTA+TGG | - | tig0026171:25721-25740 | Msa1427180:intron | 35.0% |
| ! | TTGGTAGACAATGGGTTTAT+GGG | - | tig0026171:25722-25741 | Msa1427180:intron | 35.0% |
| AGAAAATTTACAGCTCCCTT+TGG | + | tig0026171:25777-25796 | None:intergenic | 35.0% | |
| ACACTTATAGTTAGCAAGGA+AGG | - | tig0026171:25894-25913 | Msa1427180:CDS | 35.0% | |
| AAGAGCTTCAAGGGTTTCTT+GGG | + | tig0026171:23424-23443 | None:intergenic | 40.0% | |
| AAAGAGCTTCAAGGGTTTCT+TGG | + | tig0026171:23425-23444 | None:intergenic | 40.0% | |
| CCTGAGAATAAAGAGCTTCA+AGG | + | tig0026171:23434-23453 | None:intergenic | 40.0% | |
| CCTTGAAGCTCTTTATTCTC+AGG | - | tig0026171:23431-23450 | Msa1427180:three_prime_UTR | 40.0% | |
| GCATGGTGATCTTTGCTAAT+AGG | - | tig0026171:23616-23635 | Msa1427180:intron | 40.0% | |
| GTGATCTTTGCTAATAGGCA+AGG | - | tig0026171:23621-23640 | Msa1427180:intron | 40.0% | |
| GCAAGGGATGCATATTACAA+AGG | - | tig0026171:23638-23657 | Msa1427180:intron | 40.0% | |
| AAGCATATGTGGTGAATTGG+GGG | + | tig0026171:23715-23734 | None:intergenic | 40.0% | |
| GAAGCATATGTGGTGAATTG+GGG | + | tig0026171:23716-23735 | None:intergenic | 40.0% | |
| GGTAACAGTTGAAGCTTAAG+TGG | - | tig0026171:23785-23804 | Msa1427180:intron | 40.0% | |
| CAGTTGAAGCTTAAGTGGTA+TGG | - | tig0026171:23790-23809 | Msa1427180:intron | 40.0% | |
| AGGATACTTCACAACTGACT+TGG | + | tig0026171:23818-23837 | None:intergenic | 40.0% | |
| ATCAATAAGGGTGATAGCCA+AGG | + | tig0026171:23923-23942 | None:intergenic | 40.0% | |
| CATATTGGGGAGAATGATGT+TGG | - | tig0026171:24045-24064 | Msa1427180:CDS | 40.0% | |
| ! | TTTTTACATTAGCGAGTGCG+TGG | - | tig0026171:24411-24430 | Msa1427180:intron | 40.0% |
| ! | TGCATTTGGTAGTTCAGCAA+TGG | - | tig0026171:24445-24464 | Msa1427180:intron | 40.0% |
| ! | TTTGGTAGTTCAGCAATGGT+TGG | - | tig0026171:24449-24468 | Msa1427180:CDS | 40.0% |
| ! | TTGGTAGTTCAGCAATGGTT+GGG | - | tig0026171:24450-24469 | Msa1427180:CDS | 40.0% |
| ACCATTATCTTCATGGCACT+CGG | - | tig0026171:24575-24594 | Msa1427180:intron | 40.0% | |
| !! | CGGTTTTGTCATAGGATATC+CGG | - | tig0026171:24595-24614 | Msa1427180:intron | 40.0% |
| CCGACAGTTAAAACACTTCA+AGG | - | tig0026171:24732-24751 | Msa1427180:CDS | 40.0% | |
| ! | AATGACTTGGCAGCACTAAA+GGG | - | tig0026171:24765-24784 | Msa1427180:CDS | 40.0% |
| AAGGGTTCATGTCCAAATTG+TGG | - | tig0026171:24783-24802 | Msa1427180:CDS | 40.0% | |
| ATGTCCAAATTGTGGAGAAG+AGG | - | tig0026171:24791-24810 | Msa1427180:CDS | 40.0% | |
| CTAACCTCTTCTCCACAATT+TGG | + | tig0026171:24798-24817 | None:intergenic | 40.0% | |
| AGTTGGATTCCTTATCTTCC+AGG | - | tig0026171:25136-25155 | Msa1427180:intron | 40.0% | |
| CCAATAAGCATTCACACACA+TGG | + | tig0026171:25217-25236 | None:intergenic | 40.0% | |
| CCATGTGTGTGAATGCTTAT+TGG | - | tig0026171:25214-25233 | Msa1427180:intron | 40.0% | |
| !! | CGACACTCATTTTTAAACGG+AGG | + | tig0026171:25281-25300 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | tig0026171:25533-25552 | Msa1427180:intron | 40.0% |
| !! | GGAGTTGATATGTCAATCAC+TGG | - | tig0026171:25915-25934 | Msa1427180:CDS | 40.0% |
| TACAAGATGGACCATGAGGA+CGG | + | tig0026171:23374-23393 | None:intergenic | 45.0% | |
| ATCCTCGTTGCAGTATCAGA+AGG | - | tig0026171:23833-23852 | Msa1427180:intron | 45.0% | |
| ATCAACCTATGCTGATGCTG+AGG | - | tig0026171:23858-23877 | Msa1427180:intron | 45.0% | |
| AATCACCTCAGCATCAGCAT+AGG | + | tig0026171:23866-23885 | None:intergenic | 45.0% | |
| ACTTCTTCTTTGCTCTGCCT+TGG | - | tig0026171:23903-23922 | Msa1427180:intron | 45.0% | |
| !! | TGGTTTTGCGGCGTTGAATT+AGG | - | tig0026171:24150-24169 | Msa1427180:intron | 45.0% |
| AGAGAAGGGAAAAAGGGGTA+GGG | + | tig0026171:24320-24339 | None:intergenic | 45.0% | |
| AAGAGAAGGGAAAAAGGGGT+AGG | + | tig0026171:24321-24340 | None:intergenic | 45.0% | |
| GAGGACTTAGTTGTGATGCT+TGG | + | tig0026171:24541-24560 | None:intergenic | 45.0% | |
| ACCGAGTGCCATGAAGATAA+TGG | + | tig0026171:24579-24598 | None:intergenic | 45.0% | |
| !! | ATGGCACTCGGTTTTGTCAT+AGG | - | tig0026171:24587-24606 | Msa1427180:intron | 45.0% |
| AAACACTTCAAGGCTTGTGG+AGG | - | tig0026171:24742-24761 | Msa1427180:CDS | 45.0% | |
| ! | GAATGACTTGGCAGCACTAA+AGG | - | tig0026171:24764-24783 | Msa1427180:CDS | 45.0% |
| ACATGGCACTTTGCTCTATG+GGG | + | tig0026171:25200-25219 | None:intergenic | 45.0% | |
| CACATGGCACTTTGCTCTAT+GGG | + | tig0026171:25201-25220 | None:intergenic | 45.0% | |
| ACACATGGCACTTTGCTCTA+TGG | + | tig0026171:25202-25221 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | tig0026171:25532-25551 | Msa1427180:intron | 45.0% |
| TCTTGGGTGGCAGTTTGAAG+AGG | + | tig0026171:23408-23427 | None:intergenic | 50.0% | |
| AGCTTCAAGGGTTTCTTGGG+TGG | + | tig0026171:23421-23440 | None:intergenic | 50.0% | |
| TGCCTTCTGATACTGCAACG+AGG | + | tig0026171:23838-23857 | None:intergenic | 50.0% | |
| GAGAAGGGAAAAAGGGGTAG+GGG | + | tig0026171:24319-24338 | None:intergenic | 50.0% | |
| GAATGATGTGGATGTAGGGC+AGG | - | tig0026171:24373-24392 | Msa1427180:intron | 50.0% | |
| AGGGCAGGAAGATCTGTCTA+TGG | - | tig0026171:24388-24407 | Msa1427180:intron | 50.0% | |
| TTACCTGAGGCAGAAGCAAC+CGG | + | tig0026171:24617-24636 | None:intergenic | 50.0% | |
| AGGCTTGTGGAGGAATGACT+TGG | - | tig0026171:24752-24771 | Msa1427180:CDS | 50.0% | |
| GGAATTTCGCACCGAAGTTG+AGG | - | tig0026171:25235-25254 | Msa1427180:intron | 50.0% | |
| TGCGTAAATCCAGACGCCAA+AGG | - | tig0026171:25758-25777 | Msa1427180:intron | 50.0% | |
| GCGTAAATCCAGACGCCAAA+GGG | - | tig0026171:25759-25778 | Msa1427180:intron | 50.0% | |
| AGCAACAGCAGCACCGCTTT+AGG | - | tig0026171:23258-23277 | Msa1427180:three_prime_UTR | 55.0% | |
| ! | AACAGCAGCACCGCTTTAGG+TGG | - | tig0026171:23261-23280 | Msa1427180:three_prime_UTR | 55.0% |
| ! | CACCGCTTTAGGTGGATGGA+CGG | - | tig0026171:23269-23288 | Msa1427180:three_prime_UTR | 55.0% |
| CACCGTCCATCCACCTAAAG+CGG | + | tig0026171:23274-23293 | None:intergenic | 55.0% | |
| GGCAGAGATCCGAAGAGAGA+AGG | + | tig0026171:23340-23359 | None:intergenic | 55.0% | |
| TATCCGGTTGCTTCTGCCTC+AGG | - | tig0026171:24611-24630 | Msa1427180:intron | 55.0% | |
| GGCGTCTGGATTTACGCACA+AGG | + | tig0026171:25756-25775 | None:intergenic | 55.0% | |
| TTACAGCTCCCTTTGGCGTC+TGG | + | tig0026171:25770-25789 | None:intergenic | 55.0% | |
| ! | GCAGCACCGCTTTAGGTGGA+TGG | - | tig0026171:23265-23284 | Msa1427180:three_prime_UTR | 60.0% |
| ATGAGGACGGTCGTCGCAGG+TGG | + | tig0026171:23361-23380 | None:intergenic | 65.0% | |
| ACCTGCGACGACCGTCCTCA+TGG | - | tig0026171:23360-23379 | Msa1427180:three_prime_UTR | 65.0% | |
| ACCATGAGGACGGTCGTCGC+AGG | + | tig0026171:23364-23383 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026171 | gene | 23209 | 26052 | 23209 | ID=Msa1427180;Name=Msa1427180 |
| tig0026171 | mRNA | 23209 | 26052 | 23209 | ID=Msa1427180-mRNA-1;Parent=Msa1427180;Name=Msa1427180-mRNA-1;_AED=0.23;_eAED=0.23;_QI=28|1|1|1|1|1|7|263|286 |
| tig0026171 | exon | 23209 | 23555 | 23209 | ID=Msa1427180-mRNA-1:exon:5325;Parent=Msa1427180-mRNA-1 |
| tig0026171 | exon | 24005 | 24103 | 24005 | ID=Msa1427180-mRNA-1:exon:5324;Parent=Msa1427180-mRNA-1 |
| tig0026171 | exon | 24449 | 24522 | 24449 | ID=Msa1427180-mRNA-1:exon:5323;Parent=Msa1427180-mRNA-1 |
| tig0026171 | exon | 24629 | 24866 | 24629 | ID=Msa1427180-mRNA-1:exon:5322;Parent=Msa1427180-mRNA-1 |
| tig0026171 | exon | 25382 | 25468 | 25382 | ID=Msa1427180-mRNA-1:exon:5321;Parent=Msa1427180-mRNA-1 |
| tig0026171 | exon | 25561 | 25623 | 25561 | ID=Msa1427180-mRNA-1:exon:5320;Parent=Msa1427180-mRNA-1 |
| tig0026171 | exon | 25809 | 26052 | 25809 | ID=Msa1427180-mRNA-1:exon:5319;Parent=Msa1427180-mRNA-1 |
| tig0026171 | five_prime_UTR | 26025 | 26052 | 26025 | ID=Msa1427180-mRNA-1:five_prime_utr;Parent=Msa1427180-mRNA-1 |
| tig0026171 | CDS | 25809 | 26024 | 25809 | ID=Msa1427180-mRNA-1:cds;Parent=Msa1427180-mRNA-1 |
| tig0026171 | CDS | 25561 | 25623 | 25561 | ID=Msa1427180-mRNA-1:cds;Parent=Msa1427180-mRNA-1 |
| tig0026171 | CDS | 25382 | 25468 | 25382 | ID=Msa1427180-mRNA-1:cds;Parent=Msa1427180-mRNA-1 |
| tig0026171 | CDS | 24629 | 24866 | 24629 | ID=Msa1427180-mRNA-1:cds;Parent=Msa1427180-mRNA-1 |
| tig0026171 | CDS | 24449 | 24522 | 24449 | ID=Msa1427180-mRNA-1:cds;Parent=Msa1427180-mRNA-1 |
| tig0026171 | CDS | 24005 | 24103 | 24005 | ID=Msa1427180-mRNA-1:cds;Parent=Msa1427180-mRNA-1 |
| tig0026171 | CDS | 23472 | 23555 | 23472 | ID=Msa1427180-mRNA-1:cds;Parent=Msa1427180-mRNA-1 |
| tig0026171 | three_prime_UTR | 23209 | 23471 | 23209 | ID=Msa1427180-mRNA-1:three_prime_utr;Parent=Msa1427180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
