Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339670 | AES67610.1 | 96.503 | 286 | 10 | 0 | 1 | 286 | 1 | 286 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021980 | Msa0339670 | 0.841157 | 5.633853e-58 | -8.615850e-47 |
| Msa0041780 | Msa0339670 | 0.834526 | 2.848094e-56 | -8.615850e-47 |
| Msa0045620 | Msa0339670 | -0.818248 | 2.164329e-52 | -8.615850e-47 |
| Msa0050320 | Msa0339670 | 0.810324 | 1.219883e-50 | -8.615850e-47 |
| Msa0085580 | Msa0339670 | 0.815860 | 7.445836e-52 | -8.615850e-47 |
| Msa0091090 | Msa0339670 | 0.823748 | 1.172140e-53 | -8.615850e-47 |
| Msa0096570 | Msa0339670 | 0.813764 | 2.169787e-51 | -8.615850e-47 |
| Msa0117300 | Msa0339670 | 0.824160 | 9.381377e-54 | -8.615850e-47 |
| Msa0154720 | Msa0339670 | 0.809445 | 1.885586e-50 | -8.615850e-47 |
| Msa0160650 | Msa0339670 | 0.844621 | 6.749645e-59 | -8.615850e-47 |
| Msa0183200 | Msa0339670 | 0.815147 | 1.072938e-51 | -8.615850e-47 |
| Msa0188500 | Msa0339670 | 0.880850 | 3.906280e-70 | -8.615850e-47 |
| Msa0200840 | Msa0339670 | 0.808976 | 2.376600e-50 | -8.615850e-47 |
| Msa0200870 | Msa0339670 | 0.818938 | 1.509756e-52 | -8.615850e-47 |
| Msa0216550 | Msa0339670 | 0.805739 | 1.154464e-49 | -8.615850e-47 |
| Msa0223190 | Msa0339670 | 0.990470 | 8.729887e-183 | -8.615850e-47 |
| Msa0225880 | Msa0339670 | 0.838812 | 2.301956e-57 | -8.615850e-47 |
| Msa0229750 | Msa0339670 | 0.807569 | 4.741603e-50 | -8.615850e-47 |
| Msa0230980 | Msa0339670 | 0.858951 | 5.789430e-63 | -8.615850e-47 |
| Msa0243470 | Msa0339670 | 0.807564 | 4.753413e-50 | -8.615850e-47 |
| Msa0243820 | Msa0339670 | 0.829044 | 6.415667e-55 | -8.615850e-47 |
| Msa0256410 | Msa0339670 | 0.819618 | 1.056815e-52 | -8.615850e-47 |
| Msa0260470 | Msa0339670 | 0.836502 | 9.011357e-57 | -8.615850e-47 |
| Msa0264240 | Msa0339670 | 0.835703 | 1.437684e-56 | -8.615850e-47 |
| Msa0264420 | Msa0339670 | 0.996246 | 3.905300e-225 | -8.615850e-47 |
| Msa0270460 | Msa0339670 | 0.861501 | 9.812929e-64 | -8.615850e-47 |
| Msa0274950 | Msa0339670 | -0.807279 | 5.462799e-50 | -8.615850e-47 |
| Msa0295850 | Msa0339670 | 0.802828 | 4.660687e-49 | -8.615850e-47 |
| Msa0298270 | Msa0339670 | -0.800410 | 1.460458e-48 | -8.615850e-47 |
| Msa0302310 | Msa0339670 | 0.991545 | 3.194715e-188 | -8.615850e-47 |
| Msa0304110 | Msa0339670 | 0.830393 | 3.012557e-55 | -8.615850e-47 |
| Msa0309060 | Msa0339670 | 0.844638 | 6.677031e-59 | -8.615850e-47 |
| Msa0338680 | Msa0339670 | -0.805089 | 1.579590e-49 | -8.615850e-47 |
| Msa0339560 | Msa0339670 | 0.849916 | 2.377962e-60 | -8.615850e-47 |
| Msa0339670 | Msa0341190 | 0.820870 | 5.457902e-53 | -8.615850e-47 |
| Msa0339670 | Msa0352640 | 0.832375 | 9.798229e-56 | -8.615850e-47 |
| Msa0339670 | Msa0364010 | 0.837696 | 4.463492e-57 | -8.615850e-47 |
| Msa0339670 | Msa0372990 | 0.822910 | 1.839842e-53 | -8.615850e-47 |
| Msa0339670 | Msa0378670 | 0.827874 | 1.229417e-54 | -8.615850e-47 |
| Msa0339670 | Msa0378700 | 0.827535 | 1.482823e-54 | -8.615850e-47 |
| Msa0339670 | Msa0379500 | 0.813397 | 2.613768e-51 | -8.615850e-47 |
| Msa0339670 | Msa0387740 | 0.800634 | 1.314386e-48 | -8.615850e-47 |
| Msa0339670 | Msa0403720 | 0.854155 | 1.485346e-61 | -8.615850e-47 |
| Msa0339670 | Msa0404180 | 0.822148 | 2.766552e-53 | -8.615850e-47 |
| Msa0339670 | Msa0408160 | 0.816763 | 4.676537e-52 | -8.615850e-47 |
| Msa0339670 | Msa0416390 | -0.815985 | 6.983788e-52 | -8.615850e-47 |
| Msa0339670 | Msa0421390 | 0.843651 | 1.228991e-58 | -8.615850e-47 |
| Msa0339670 | Msa0428330 | 0.820191 | 7.813811e-53 | -8.615850e-47 |
| Msa0339670 | Msa0431940 | 0.834694 | 2.584920e-56 | -8.615850e-47 |
| Msa0339670 | Msa0436600 | 0.827327 | 1.663126e-54 | -8.615850e-47 |
| Msa0339670 | Msa0436610 | 0.811504 | 6.772469e-51 | -8.615850e-47 |
| Msa0339670 | Msa0448400 | 0.835017 | 2.142635e-56 | -8.615850e-47 |
| Msa0339670 | Msa0456480 | 0.821211 | 4.554421e-53 | -8.615850e-47 |
| Msa0339670 | Msa0462980 | -0.824379 | 8.334519e-54 | -8.615850e-47 |
| Msa0339670 | Msa0481050 | 0.800248 | 1.575760e-48 | -8.615850e-47 |
| Msa0339670 | Msa0496460 | 0.863076 | 3.222916e-64 | -8.615850e-47 |
| Msa0339670 | Msa0496470 | 0.854254 | 1.390839e-61 | -8.615850e-47 |
| Msa0339670 | Msa0496570 | 0.860394 | 2.129490e-63 | -8.615850e-47 |
| Msa0339670 | Msa0500490 | 0.808949 | 2.408334e-50 | -8.615850e-47 |
| Msa0339670 | Msa0508580 | -0.825832 | 3.779930e-54 | -8.615850e-47 |
| Msa0339670 | Msa0520810 | 0.843701 | 1.191508e-58 | -8.615850e-47 |
| Msa0339670 | Msa0521940 | -0.819891 | 9.150926e-53 | -8.615850e-47 |
| Msa0339670 | Msa0546370 | 0.865039 | 7.882384e-65 | -8.615850e-47 |
| Msa0339670 | Msa0547200 | -0.806168 | 9.375722e-50 | -8.615850e-47 |
| Msa0339670 | Msa0549330 | 0.817814 | 2.712594e-52 | -8.615850e-47 |
| Msa0339670 | Msa0555510 | 0.807348 | 5.280577e-50 | -8.615850e-47 |
| Msa0339670 | Msa0560370 | 0.823241 | 1.540089e-53 | -8.615850e-47 |
| Msa0339670 | Msa0580540 | 0.812713 | 3.690772e-51 | -8.615850e-47 |
| Msa0339670 | Msa0601920 | -0.815948 | 7.116120e-52 | -8.615850e-47 |
| Msa0339670 | Msa0604640 | 0.836958 | 6.895050e-57 | -8.615850e-47 |
| Msa0339670 | Msa0608940 | 0.815282 | 1.001458e-51 | -8.615850e-47 |
| Msa0339670 | Msa0621780 | 0.804465 | 2.132275e-49 | -8.615850e-47 |
| Msa0339670 | Msa0623310 | -0.814689 | 1.355581e-51 | -8.615850e-47 |
| Msa0339670 | Msa0623360 | 0.848836 | 4.754218e-60 | -8.615850e-47 |
| Msa0339670 | Msa0630850 | 0.865587 | 5.300163e-65 | -8.615850e-47 |
| Msa0339670 | Msa0643020 | -0.821077 | 4.891913e-53 | -8.615850e-47 |
| Msa0339670 | Msa0648200 | 0.804187 | 2.436087e-49 | -8.615850e-47 |
| Msa0339670 | Msa0655610 | 0.803233 | 3.844881e-49 | -8.615850e-47 |
| Msa0339670 | Msa0659020 | 0.807430 | 5.073666e-50 | -8.615850e-47 |
| Msa0339670 | Msa0681880 | 0.862228 | 5.879445e-64 | -8.615850e-47 |
| Msa0339670 | Msa0682730 | -0.804414 | 2.185299e-49 | -8.615850e-47 |
| Msa0339670 | Msa0691740 | 0.800541 | 1.373172e-48 | -8.615850e-47 |
| Msa0339670 | Msa0697600 | 0.807670 | 4.512237e-50 | -8.615850e-47 |
| Msa0339670 | Msa0702310 | 0.810016 | 1.421041e-50 | -8.615850e-47 |
| Msa0339670 | Msa0702620 | 0.801141 | 1.035819e-48 | -8.615850e-47 |
| Msa0339670 | Msa0704780 | 0.874834 | 4.954025e-68 | -8.615850e-47 |
| Msa0339670 | Msa0705050 | 0.842557 | 2.405202e-58 | -8.615850e-47 |
| Msa0339670 | Msa0705130 | 0.809350 | 1.976535e-50 | -8.615850e-47 |
| Msa0339670 | Msa0714060 | 0.828297 | 9.722705e-55 | -8.615850e-47 |
| Msa0339670 | Msa0714200 | 0.827019 | 1.971231e-54 | -8.615850e-47 |
| Msa0339670 | Msa0756440 | 0.850035 | 2.202277e-60 | -8.615850e-47 |
| Msa0339670 | Msa0770020 | 0.800498 | 1.401045e-48 | -8.615850e-47 |
| Msa0339670 | Msa0775420 | 0.831004 | 2.134270e-55 | -8.615850e-47 |
| Msa0339670 | Msa0795710 | 0.804890 | 1.738744e-49 | -8.615850e-47 |
| Msa0339670 | Msa0796460 | 0.805868 | 1.084398e-49 | -8.615850e-47 |
| Msa0339670 | Msa0796610 | 0.808374 | 3.196482e-50 | -8.615850e-47 |
| Msa0339670 | Msa0807980 | 0.812580 | 3.946159e-51 | -8.615850e-47 |
| Msa0339670 | Msa0812800 | 0.826519 | 2.594363e-54 | -8.615850e-47 |
| Msa0339670 | Msa0813630 | 0.816633 | 5.000266e-52 | -8.615850e-47 |
| Msa0339670 | Msa0815950 | 0.802795 | 4.735445e-49 | -8.615850e-47 |
| Msa0339670 | Msa0833910 | 0.801209 | 1.002964e-48 | -8.615850e-47 |
| Msa0339670 | Msa0834200 | 0.833985 | 3.893757e-56 | -8.615850e-47 |
| Msa0339670 | Msa0834240 | 0.836936 | 6.987574e-57 | -8.615850e-47 |
| Msa0339670 | Msa0835550 | 0.860848 | 1.551745e-63 | -8.615850e-47 |
| Msa0339670 | Msa0846300 | 0.815914 | 7.241551e-52 | -8.615850e-47 |
| Msa0339670 | Msa0853150 | 0.805523 | 1.281466e-49 | -8.615850e-47 |
| Msa0339670 | Msa0861480 | 0.827394 | 1.602966e-54 | -8.615850e-47 |
| Msa0339670 | Msa0861560 | 0.832879 | 7.347976e-56 | -8.615850e-47 |
| Msa0339670 | Msa0871310 | 0.822948 | 1.802747e-53 | -8.615850e-47 |
| Msa0339670 | Msa0899730 | 0.807749 | 4.341839e-50 | -8.615850e-47 |
| Msa0339670 | Msa0927890 | 0.809739 | 1.630587e-50 | -8.615850e-47 |
| Msa0339670 | Msa0967250 | 0.803132 | 4.033826e-49 | -8.615850e-47 |
| Msa0339670 | Msa0975560 | 0.837553 | 4.856385e-57 | -8.615850e-47 |
| Msa0339670 | Msa0986560 | 0.830404 | 2.993521e-55 | -8.615850e-47 |
| Msa0339670 | Msa0995660 | 0.803230 | 3.849217e-49 | -8.615850e-47 |
| Msa0339670 | Msa0998940 | 0.805503 | 1.293873e-49 | -8.615850e-47 |
| Msa0339670 | Msa0999590 | 0.848604 | 5.511998e-60 | -8.615850e-47 |
| Msa0339670 | Msa1026710 | -0.803306 | 3.713292e-49 | -8.615850e-47 |
| Msa0339670 | Msa1031530 | 0.811115 | 8.227501e-51 | -8.615850e-47 |
| Msa0339670 | Msa1035040 | -0.801863 | 7.364677e-49 | -8.615850e-47 |
| Msa0339670 | Msa1038110 | 0.850465 | 1.669011e-60 | -8.615850e-47 |
| Msa0339670 | Msa1041550 | 0.802715 | 4.918942e-49 | -8.615850e-47 |
| Msa0339670 | Msa1052030 | 0.807993 | 3.852191e-50 | -8.615850e-47 |
| Msa0339670 | Msa1071310 | 0.830603 | 2.675974e-55 | -8.615850e-47 |
| Msa0339670 | Msa1081530 | 0.807688 | 4.472696e-50 | -8.615850e-47 |
| Msa0339670 | Msa1101300 | 0.809640 | 1.712514e-50 | -8.615850e-47 |
| Msa0339670 | Msa1101610 | 0.813307 | 2.735072e-51 | -8.615850e-47 |
| Msa0339670 | Msa1129660 | 0.841219 | 5.425992e-58 | -8.615850e-47 |
| Msa0339670 | Msa1133440 | 0.800207 | 1.605796e-48 | -8.615850e-47 |
| Msa0339670 | Msa1188820 | 0.810172 | 1.315347e-50 | -8.615850e-47 |
| Msa0339670 | Msa1199580 | 0.843924 | 1.038511e-58 | -8.615850e-47 |
| Msa0339670 | Msa1211260 | 0.806475 | 8.077406e-50 | -8.615850e-47 |
| Msa0339670 | Msa1211390 | 0.807184 | 5.720651e-50 | -8.615850e-47 |
| Msa0339670 | Msa1216700 | 0.804066 | 2.582396e-49 | -8.615850e-47 |
| Msa0339670 | Msa1223510 | 0.811929 | 5.473721e-51 | -8.615850e-47 |
| Msa0339670 | Msa1229770 | 0.811035 | 8.560858e-51 | -8.615850e-47 |
| Msa0339670 | Msa1237260 | 0.813664 | 2.282921e-51 | -8.615850e-47 |
| Msa0339670 | Msa1240060 | -0.861860 | 7.622115e-64 | -8.615850e-47 |
| Msa0339670 | Msa1242990 | 0.830288 | 3.195463e-55 | -8.615850e-47 |
| Msa0339670 | Msa1263610 | 0.845779 | 3.281571e-59 | -8.615850e-47 |
| Msa0339670 | Msa1264140 | 0.815927 | 7.194842e-52 | -8.615850e-47 |
| Msa0339670 | Msa1266720 | 0.833633 | 4.766818e-56 | -8.615850e-47 |
| Msa0339670 | Msa1281370 | -0.851142 | 1.075751e-60 | -8.615850e-47 |
| Msa0339670 | Msa1282210 | 0.800718 | 1.263742e-48 | -8.615850e-47 |
| Msa0339670 | Msa1302780 | 0.816240 | 6.123150e-52 | -8.615850e-47 |
| Msa0339670 | Msa1306700 | 0.827539 | 1.479730e-54 | -8.615850e-47 |
| Msa0339670 | Msa1320530 | -0.871325 | 7.447697e-67 | -8.615850e-47 |
| Msa0339670 | Msa1323920 | 0.816493 | 5.376431e-52 | -8.615850e-47 |
| Msa0339670 | Msa1328630 | 0.844676 | 6.522391e-59 | -8.615850e-47 |
| Msa0339670 | Msa1328720 | 0.844023 | 9.774161e-59 | -8.615850e-47 |
| Msa0339670 | Msa1329660 | 0.804365 | 2.236728e-49 | -8.615850e-47 |
| Msa0339670 | Msa1342400 | 0.858761 | 6.598121e-63 | -8.615850e-47 |
| Msa0339670 | Msa1343480 | 0.803628 | 3.183681e-49 | -8.615850e-47 |
| Msa0339670 | Msa1347610 | -0.812312 | 4.516967e-51 | -8.615850e-47 |
| Msa0339670 | Msa1353280 | 0.813953 | 1.971407e-51 | -8.615850e-47 |
| Msa0339670 | Msa1357720 | 0.809097 | 2.238610e-50 | -8.615850e-47 |
| Msa0339670 | Msa1368660 | 0.833642 | 4.742712e-56 | -8.615850e-47 |
| Msa0339670 | Msa1370630 | 0.819405 | 1.181562e-52 | -8.615850e-47 |
| Msa0339670 | Msa1370930 | -0.800482 | 1.411850e-48 | -8.615850e-47 |
| Msa0339670 | Msa1371800 | -0.819856 | 9.321053e-53 | -8.615850e-47 |
| Msa0339670 | Msa1376310 | -0.819677 | 1.024486e-52 | -8.615850e-47 |
| Msa0339670 | Msa1388070 | 0.803266 | 3.784271e-49 | -8.615850e-47 |
| Msa0339670 | Msa1388270 | 0.828488 | 8.741627e-55 | -8.615850e-47 |
| Msa0339670 | Msa1401000 | 0.843966 | 1.012216e-58 | -8.615850e-47 |
| Msa0339670 | Msa1403950 | 0.804471 | 2.126297e-49 | -8.615850e-47 |
| Msa0339670 | Msa1407200 | 0.833529 | 5.062050e-56 | -8.615850e-47 |
| Msa0339670 | Msa1409050 | 0.834827 | 2.392512e-56 | -8.615850e-47 |
| Msa0339670 | Msa1409760 | 0.835739 | 1.408000e-56 | -8.615850e-47 |
| Msa0339670 | Msa1413900 | 0.805897 | 1.069342e-49 | -8.615850e-47 |
| Msa0339670 | Msa1427180 | 0.989994 | 1.422902e-180 | -8.615850e-47 |
| Msa0339670 | Msa1428560 | 0.824332 | 8.547483e-54 | -8.615850e-47 |
| Msa0339670 | Msa1431180 | 0.811587 | 6.499622e-51 | -8.615850e-47 |
| Msa0339670 | Msa1446220 | 0.810890 | 9.203984e-51 | -8.615850e-47 |
| Msa0339670 | Msa1450630 | 0.813550 | 2.418477e-51 | -8.615850e-47 |
| Msa0339670 | Msa1452200 | 0.840863 | 6.731024e-58 | -8.615850e-47 |
| Msa0339670 | Msa1452790 | 0.806390 | 8.419851e-50 | -8.615850e-47 |
| Msa0339670 | Msa1459630 | 0.825399 | 4.788199e-54 | -8.615850e-47 |
| Msa0339670 | Msa1460970 | -0.825119 | 5.575783e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339670 | MtrunA17_Chr2g0328301 | 96.503 | 286 | 10 | 0 | 1 | 286 | 1 | 286 | 0.0 | 575 |
| Msa0339670 | MtrunA17_Chr4g0031681 | 46.667 | 210 | 47 | 5 | 96 | 286 | 261 | 424 | 3.45e-51 | 173 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339670 | AT5G59400.1 | 57.931 | 290 | 111 | 4 | 7 | 285 | 6 | 295 | 7.72e-117 | 338 |
| Msa0339670 | AT5G59400.2 | 54.237 | 236 | 97 | 4 | 7 | 231 | 6 | 241 | 1.14e-81 | 247 |
Find 81 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAACGGTTGTTTCTGATTT+TGG | 0.096153 | 2_4:-60923843 | None:intergenic |
| TATCAAAATGCATTTAATTT+AGG | 0.174239 | 2_4:+60925056 | Msa0339670:CDS |
| TTTGGTAGACAATGGGTTTA+TGG | 0.211478 | 2_4:+60926277 | Msa0339670:CDS |
| ACACATGGCACTTTGCTCTA+TGG | 0.252132 | 2_4:-60925755 | None:intergenic |
| CTAACCTCTTCTCCACAATT+TGG | 0.256151 | 2_4:-60925351 | None:intergenic |
| CCATGTGTGTGAATGCTTAT+TGG | 0.266944 | 2_4:+60925770 | Msa0339670:CDS |
| AAAGAGCTTCAAGGGTTTCT+TGG | 0.284671 | 2_4:-60923961 | None:intergenic |
| CAGCAATCAACTTCAAGATT+TGG | 0.317400 | 2_4:+60926259 | Msa0339670:intron |
| TAGACATTTAAATGTAATCT+TGG | 0.329454 | 2_4:+60926554 | Msa0339670:three_prime_UTR |
| CCGACAGTTAAAACACTTCA+AGG | 0.341879 | 2_4:+60925288 | Msa0339670:intron |
| TTACAGCTCCCTTTGGCGTC+TGG | 0.345446 | 2_4:-60926323 | None:intergenic |
| TTGGTAGACAATGGGTTTAT+GGG | 0.350926 | 2_4:+60926278 | Msa0339670:CDS |
| TTTCATCTTCCTTCTCTCTT+CGG | 0.366302 | 2_4:+60923867 | Msa0339670:CDS |
| GGTGAATACCATTATCTTCA+TGG | 0.383957 | 2_4:+60925124 | Msa0339670:CDS |
| CCTTGAAGCTCTTTATTCTC+AGG | 0.389886 | 2_4:+60923970 | Msa0339670:CDS |
| CACATGGCACTTTGCTCTAT+GGG | 0.391842 | 2_4:-60925754 | None:intergenic |
| AAGAGCTTCAAGGGTTTCTT+GGG | 0.410172 | 2_4:-60923960 | None:intergenic |
| ACCGAGTGCCATGAAGATAA+TGG | 0.411246 | 2_4:-60925132 | None:intergenic |
| CCTGAGAATAAAGAGCTTCA+AGG | 0.416387 | 2_4:-60923970 | None:intergenic |
| AGAAAATTTACAGCTCCCTT+TGG | 0.418396 | 2_4:-60926330 | None:intergenic |
| GAATGACTTGGCAGCACTAA+AGG | 0.426467 | 2_4:+60925320 | Msa0339670:CDS |
| TCAAACATAAACCAACTTGT+AGG | 0.432749 | 2_4:+60926587 | Msa0339670:three_prime_UTR |
| TTACCTGAGGCAGAAGCAAC+CGG | 0.444107 | 2_4:-60925170 | None:intergenic |
| AGCAACAGCAGCACCGCTTT+AGG | 0.444700 | 2_4:+60923797 | Msa0339670:CDS |
| TATCCGGTTGCTTCTGCCTC+AGG | 0.446058 | 2_4:+60925167 | Msa0339670:CDS |
| TTGGTAGTTCAGCAATGGTT+GGG | 0.456189 | 2_4:+60925006 | Msa0339670:CDS |
| TTCAAGATTTGGTAGACAAT+GGG | 0.459540 | 2_4:+60926270 | Msa0339670:CDS |
| TTTGGTAGTTCAGCAATGGT+TGG | 0.463462 | 2_4:+60925005 | Msa0339670:CDS |
| GAGGACTTAGTTGTGATGCT+TGG | 0.477149 | 2_4:-60925094 | None:intergenic |
| TGCATTTGGTAGTTCAGCAA+TGG | 0.480534 | 2_4:+60925001 | Msa0339670:CDS |
| GGTAACAGTTGAAGCTTAAG+TGG | 0.481788 | 2_4:+60924338 | Msa0339670:intron |
| TTTAATTTAGGATTATCATA+TGG | 0.482685 | 2_4:+60925068 | Msa0339670:CDS |
| CTTCAAGATTTGGTAGACAA+TGG | 0.486758 | 2_4:+60926269 | Msa0339670:CDS |
| CAGTTGAAGCTTAAGTGGTA+TGG | 0.493314 | 2_4:+60924343 | Msa0339670:intron |
| AGGGCAGGAAGATCTGTCTA+TGG | 0.493392 | 2_4:+60924944 | Msa0339670:intron |
| CTGAGAATAAAGAGCTTCAA+GGG | 0.499082 | 2_4:-60923969 | None:intergenic |
| ACCATTATCTTCATGGCACT+CGG | 0.500659 | 2_4:+60925131 | Msa0339670:CDS |
| GCGTAAATCCAGACGCCAAA+GGG | 0.509490 | 2_4:+60926315 | Msa0339670:CDS |
| AATGACTTGGCAGCACTAAA+GGG | 0.512532 | 2_4:+60925321 | Msa0339670:CDS |
| GGTCCATCTTGTATATATGT+TGG | 0.512587 | 2_4:+60923920 | Msa0339670:CDS |
| TTAAAACACTTCAAGGCTTG+TGG | 0.533051 | 2_4:+60925295 | Msa0339670:CDS |
| GGAGTTGATATGTCAATCAC+TGG | 0.535633 | 2_4:+60926471 | Msa0339670:three_prime_UTR |
| TTATGTTATTACCTCAACTT+CGG | 0.535679 | 2_4:-60925802 | None:intergenic |
| AGGATACTTCACAACTGACT+TGG | 0.542875 | 2_4:-60924368 | None:intergenic |
| TCTTGGGTGGCAGTTTGAAG+AGG | 0.543205 | 2_4:-60923944 | None:intergenic |
| AGGCTTGTGGAGGAATGACT+TGG | 0.547292 | 2_4:+60925308 | Msa0339670:CDS |
| GGAATTTCGCACCGAAGTTG+AGG | 0.547885 | 2_4:+60925791 | Msa0339670:CDS |
| ACCTGCGACGACCGTCCTCA+TGG | 0.549456 | 2_4:+60923899 | Msa0339670:CDS |
| AACATGTCATCAACTATCAA+AGG | 0.550328 | 2_4:-60924218 | None:intergenic |
| GGCAGAGATCCGAAGAGAGA+AGG | 0.551019 | 2_4:-60923876 | None:intergenic |
| ACCATGAGGACGGTCGTCGC+AGG | 0.551432 | 2_4:-60923900 | None:intergenic |
| GCAGCACCGCTTTAGGTGGA+TGG | 0.553063 | 2_4:+60923804 | Msa0339670:CDS |
| GGACCAACATATATACAAGA+TGG | 0.557422 | 2_4:-60923923 | None:intergenic |
| AGCTTCAAGGGTTTCTTGGG+TGG | 0.559365 | 2_4:-60923957 | None:intergenic |
| ATGGTATTCACCATGAAAAG+AGG | 0.559608 | 2_4:-60925113 | None:intergenic |
| ATGTCCAAATTGTGGAGAAG+AGG | 0.561187 | 2_4:+60925347 | Msa0339670:CDS |
| AAGGGTTCATGTCCAAATTG+TGG | 0.563160 | 2_4:+60925339 | Msa0339670:CDS |
| CACCGTCCATCCACCTAAAG+CGG | 0.577414 | 2_4:-60923810 | None:intergenic |
| CACCGCTTTAGGTGGATGGA+CGG | 0.580229 | 2_4:+60923808 | Msa0339670:CDS |
| ACACTTATAGTTAGCAAGGA+AGG | 0.581147 | 2_4:+60926450 | Msa0339670:three_prime_UTR |
| TGCGTAAATCCAGACGCCAA+AGG | 0.585411 | 2_4:+60926314 | Msa0339670:CDS |
| ACAAACACATATGAACATGT+TGG | 0.585580 | 2_4:+60923766 | Msa0339670:exon |
| TGCATTTGTAAGAACAGACA+AGG | 0.588695 | 2_4:+60925719 | Msa0339670:CDS |
| TTGTACACTTATAGTTAGCA+AGG | 0.588786 | 2_4:+60926446 | Msa0339670:three_prime_UTR |
| AAACACTTCAAGGCTTGTGG+AGG | 0.598739 | 2_4:+60925298 | Msa0339670:CDS |
| ATGAGGACGGTCGTCGCAGG+TGG | 0.602794 | 2_4:-60923897 | None:intergenic |
| AAGTTGATGCTGCAAAACAT+TGG | 0.603833 | 2_4:-60925029 | None:intergenic |
| AACAGCAGCACCGCTTTAGG+TGG | 0.608229 | 2_4:+60923800 | Msa0339670:CDS |
| CTAACTATAAGTGTACAAGT+TGG | 0.614393 | 2_4:-60926441 | None:intergenic |
| ATCCTCGTTGCAGTATCAGA+AGG | 0.615303 | 2_4:+60924386 | Msa0339670:CDS |
| CCAATAAGCATTCACACACA+TGG | 0.617576 | 2_4:-60925770 | None:intergenic |
| AATCACCTCAGCATCAGCAT+AGG | 0.620614 | 2_4:-60924416 | None:intergenic |
| TGACATGTTTGATAGAGTAG+AGG | 0.624434 | 2_4:+60924232 | Msa0339670:CDS |
| GCAAGGGATGCATATTACAA+AGG | 0.629849 | 2_4:+60924191 | Msa0339670:CDS |
| GGCGTCTGGATTTACGCACA+AGG | 0.641633 | 2_4:-60926309 | None:intergenic |
| TACAAGATGGACCATGAGGA+CGG | 0.641757 | 2_4:-60923910 | None:intergenic |
| ATCAACCTATGCTGATGCTG+AGG | 0.651620 | 2_4:+60924411 | Msa0339670:CDS |
| ACATGGCACTTTGCTCTATG+GGG | 0.653009 | 2_4:-60925753 | None:intergenic |
| AGAAGGAAGATGAAACAGAA+CGG | 0.670572 | 2_4:-60923859 | None:intergenic |
| TATATACAAGATGGACCATG+AGG | 0.716840 | 2_4:-60923914 | None:intergenic |
| TGCCTTCTGATACTGCAACG+AGG | 0.764708 | 2_4:-60924388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATAAAACTATTTTC+AGG | - | chr2_4:60924686-60924705 | None:intergenic | 10.0% |
| !!! | GAAAATAGTTTTATTAAAAT+TGG | + | chr2_4:60924686-60924705 | Msa0339670:intron | 10.0% |
| !! | ATAAAAAGTTAAAATTTGTA+AGG | - | chr2_4:60925227-60925246 | None:intergenic | 10.0% |
| !! | TTAAAGAAAAAATAATACTT+TGG | + | chr2_4:60925956-60925975 | Msa0339670:intron | 10.0% |
| !! | TAATAATATGTGAAATTAAT+TGG | - | chr2_4:60926161-60926180 | None:intergenic | 10.0% |
| !!! | ATTGAGAATTATTTTAAACA+TGG | + | chr2_4:60924147-60924166 | Msa0339670:intron | 15.0% |
| !! | ATCTTATGTTATTCATATTA+TGG | + | chr2_4:60924317-60924336 | Msa0339670:intron | 15.0% |
| !!! | TTTTATTAAAATTGGTTTTG+CGG | + | chr2_4:60924694-60924713 | Msa0339670:intron | 15.0% |
| !! | TAATAAATATTACATTCATC+TGG | + | chr2_4:60924833-60924852 | Msa0339670:intron | 15.0% |
| !!! | TATCAAAATGCATTTAATTT+AGG | + | chr2_4:60925056-60925075 | Msa0339670:CDS | 15.0% |
| !!! | TTTAATTTAGGATTATCATA+TGG | + | chr2_4:60925068-60925087 | Msa0339670:CDS | 15.0% |
| !! | TGTAACATAATATATATTGA+AGG | + | chr2_4:60925985-60926004 | Msa0339670:intron | 15.0% |
| !! | GTAACATAATATATATTGAA+GGG | + | chr2_4:60925986-60926005 | Msa0339670:intron | 15.0% |
| !!! | TCATTTTGAAACAATTTTTT+TGG | + | chr2_4:60926059-60926078 | Msa0339670:intron | 15.0% |
| !! | GAATAACATAAGATTAAGAT+CGG | - | chr2_4:60924311-60924330 | None:intergenic | 20.0% |
| !!! | GTTGTTTGTTTTATTGAAAA+AGG | + | chr2_4:60925512-60925531 | Msa0339670:intron | 20.0% |
| !! | AATAGTTGATTAGGATAATT+TGG | - | chr2_4:60925923-60925942 | None:intergenic | 20.0% |
| !! | AAATTATCCTAATCAACTAT+TGG | + | chr2_4:60925922-60925941 | Msa0339670:intron | 20.0% |
| !!! | ACTATGATTTTTCAATAGTA+AGG | + | chr2_4:60926356-60926375 | Msa0339670:three_prime_UTR | 20.0% |
| !! | TAGACATTTAAATGTAATCT+TGG | + | chr2_4:60926554-60926573 | Msa0339670:three_prime_UTR | 20.0% |
| !!! | GAATTATTTTAAACATGGCA+TGG | + | chr2_4:60924152-60924171 | Msa0339670:intron | 25.0% |
| !! | TGGTGAATTTTCATCAATAA+GGG | - | chr2_4:60924488-60924507 | None:intergenic | 25.0% |
| !! | TTGGTGAATTTTCATCAATA+AGG | - | chr2_4:60924489-60924508 | None:intergenic | 25.0% |
| ! | TAAGTATAAGCAACTGAAAT+TGG | - | chr2_4:60924508-60924527 | None:intergenic | 25.0% |
| !!! | ATACTTAAGTTTTAGTTGCA+TGG | + | chr2_4:60924521-60924540 | Msa0339670:intron | 25.0% |
| ! | ATAATGCAAAGAATGCATAT+TGG | + | chr2_4:60924586-60924605 | Msa0339670:intron | 25.0% |
| ! | TAATGCAAAGAATGCATATT+GGG | + | chr2_4:60924587-60924606 | Msa0339670:intron | 25.0% |
| !!! | GAATGTTTTTGTTTTCGAAA+AGG | + | chr2_4:60924745-60924764 | Msa0339670:intron | 25.0% |
| ! | ACTACCAAATGCAAAAAATA+AGG | - | chr2_4:60924994-60925013 | None:intergenic | 25.0% |
| ! | TATGAAAGACTACAAAGTTT+GGG | - | chr2_4:60925385-60925404 | None:intergenic | 25.0% |
| ! | TTATGTTATTACCTCAACTT+CGG | - | chr2_4:60925805-60925824 | None:intergenic | 25.0% |
| !!! | TTCAAAATGAATGTCACTTT+CGG | - | chr2_4:60926049-60926068 | None:intergenic | 25.0% |
| !!! | ATTGTTTTACTTCTTGCAAA+AGG | + | chr2_4:60926115-60926134 | Msa0339670:intron | 25.0% |
| !!! | GATTTTTCAATAGTAAGGAA+AGG | + | chr2_4:60926361-60926380 | Msa0339670:three_prime_UTR | 25.0% |
| ACAAACACATATGAACATGT+TGG | + | chr2_4:60923766-60923785 | Msa0339670:exon | 30.0% | |
| AACATGTCATCAACTATCAA+AGG | - | chr2_4:60924221-60924240 | None:intergenic | 30.0% | |
| ! | AAGAAGTTAAGAAGCATATG+TGG | - | chr2_4:60924279-60924298 | None:intergenic | 30.0% |
| GCATTCTTTGCATTATTAAG+AGG | - | chr2_4:60924582-60924601 | None:intergenic | 30.0% | |
| AATGCAAAGAATGCATATTG+GGG | + | chr2_4:60924588-60924607 | Msa0339670:intron | 30.0% | |
| !!! | TTTTCAGGTCTAATCAATGT+AGG | - | chr2_4:60924671-60924690 | None:intergenic | 30.0% |
| CAAGAATAGAGAAAAGAGAA+GGG | - | chr2_4:60924890-60924909 | None:intergenic | 30.0% | |
| CGTCTTAATATTGAATGATG+TGG | + | chr2_4:60924917-60924936 | Msa0339670:intron | 30.0% | |
| ATATTGAATGATGTGGATGT+AGG | + | chr2_4:60924924-60924943 | Msa0339670:intron | 30.0% | |
| TATTGAATGATGTGGATGTA+GGG | + | chr2_4:60924925-60924944 | Msa0339670:intron | 30.0% | |
| !!! | TGGACCTTATTTTTTGCATT+TGG | + | chr2_4:60924987-60925006 | Msa0339670:CDS | 30.0% |
| ATATGAAAAGTAGCAGCAAA+AGG | - | chr2_4:60925200-60925219 | None:intergenic | 30.0% | |
| !!! | TGTTTTAACTGTCGGAAAAA+AGG | - | chr2_4:60925283-60925302 | None:intergenic | 30.0% |
| ATGAAAGACTACAAAGTTTG+GGG | - | chr2_4:60925384-60925403 | None:intergenic | 30.0% | |
| CTATGAAAGACTACAAAGTT+TGG | - | chr2_4:60925386-60925405 | None:intergenic | 30.0% | |
| CTTTGACTAATGATCTTGTT+TGG | + | chr2_4:60925427-60925446 | Msa0339670:intron | 30.0% | |
| TTGCTTATCGAATAAGTGTT+CGG | - | chr2_4:60925466-60925485 | None:intergenic | 30.0% | |
| TTAAAATTGTCTGAGTGAGT+TGG | + | chr2_4:60925675-60925694 | Msa0339670:intron | 30.0% | |
| TTCTTACAAATGCAAATACC+TGG | - | chr2_4:60925713-60925732 | None:intergenic | 30.0% | |
| !! | AAGCGACACTCATTTTTAAA+CGG | - | chr2_4:60925840-60925859 | None:intergenic | 30.0% |
| TTCATTAATCTGTGTGCAAT+TGG | - | chr2_4:60925866-60925885 | None:intergenic | 30.0% | |
| CAACAAACCAATAGTTGATT+AGG | - | chr2_4:60925932-60925951 | None:intergenic | 30.0% | |
| AAAAGGCAGTTCATAACATT+AGG | + | chr2_4:60926132-60926151 | Msa0339670:intron | 30.0% | |
| ! | TTCAAGATTTGGTAGACAAT+GGG | + | chr2_4:60926270-60926289 | Msa0339670:CDS | 30.0% |
| CTAACTATAAGTGTACAAGT+TGG | - | chr2_4:60926444-60926463 | None:intergenic | 30.0% | |
| TTGTACACTTATAGTTAGCA+AGG | + | chr2_4:60926446-60926465 | Msa0339670:three_prime_UTR | 30.0% | |
| !!! | AGAACGGTTGTTTCTGATTT+TGG | - | chr2_4:60923846-60923865 | None:intergenic | 35.0% |
| AGAAGGAAGATGAAACAGAA+CGG | - | chr2_4:60923862-60923881 | None:intergenic | 35.0% | |
| TTTCATCTTCCTTCTCTCTT+CGG | + | chr2_4:60923867-60923886 | Msa0339670:CDS | 35.0% | |
| TATATACAAGATGGACCATG+AGG | - | chr2_4:60923917-60923936 | None:intergenic | 35.0% | |
| GGTCCATCTTGTATATATGT+TGG | + | chr2_4:60923920-60923939 | Msa0339670:CDS | 35.0% | |
| GGACCAACATATATACAAGA+TGG | - | chr2_4:60923926-60923945 | None:intergenic | 35.0% | |
| CTGAGAATAAAGAGCTTCAA+GGG | - | chr2_4:60923972-60923991 | None:intergenic | 35.0% | |
| GCGCTTATGCTTAATTAAGT+TGG | + | chr2_4:60924074-60924093 | Msa0339670:intron | 35.0% | |
| TGATCTTTGCTAATAGGCAA+GGG | + | chr2_4:60924175-60924194 | Msa0339670:intron | 35.0% | |
| TGACATGTTTGATAGAGTAG+AGG | + | chr2_4:60924232-60924251 | Msa0339670:CDS | 35.0% | |
| ! | AGAAGCATATGTGGTGAATT+GGG | - | chr2_4:60924270-60924289 | None:intergenic | 35.0% |
| ! | AAGAAGCATATGTGGTGAAT+TGG | - | chr2_4:60924271-60924290 | None:intergenic | 35.0% |
| AATGATGTTGGATCTTCATG+TGG | + | chr2_4:60924613-60924632 | Msa0339670:intron | 35.0% | |
| ! | TTCATCTGGTTAGAGTGTTA+AGG | + | chr2_4:60924847-60924866 | Msa0339670:intron | 35.0% |
| AGAAAAGAGAAGGGAAAAAG+GGG | - | chr2_4:60924881-60924900 | None:intergenic | 35.0% | |
| GAGAAAAGAGAAGGGAAAAA+GGG | - | chr2_4:60924882-60924901 | None:intergenic | 35.0% | |
| AGAGAAAAGAGAAGGGAAAA+AGG | - | chr2_4:60924883-60924902 | None:intergenic | 35.0% | |
| CCAAGAATAGAGAAAAGAGA+AGG | - | chr2_4:60924891-60924910 | None:intergenic | 35.0% | |
| ! | CCTTCTCTTTTCTCTATTCT+TGG | + | chr2_4:60924888-60924907 | Msa0339670:intron | 35.0% |
| !! | AAGTTGATGCTGCAAAACAT+TGG | - | chr2_4:60925032-60925051 | None:intergenic | 35.0% |
| ! | AATGTTTTGCAGCATCAACT+TGG | + | chr2_4:60925031-60925050 | Msa0339670:CDS | 35.0% |
| ! | ACAACTAAGTCCTCTTTTCA+TGG | + | chr2_4:60925103-60925122 | Msa0339670:CDS | 35.0% |
| ATGGTATTCACCATGAAAAG+AGG | - | chr2_4:60925116-60925135 | None:intergenic | 35.0% | |
| GGTGAATACCATTATCTTCA+TGG | + | chr2_4:60925124-60925143 | Msa0339670:CDS | 35.0% | |
| ! | AGCAAAAGGATTTTTACCTG+AGG | - | chr2_4:60925186-60925205 | None:intergenic | 35.0% |
| !!! | CCTTGAAGTGTTTTAACTGT+CGG | - | chr2_4:60925291-60925310 | None:intergenic | 35.0% |
| TTAAAACACTTCAAGGCTTG+TGG | + | chr2_4:60925295-60925314 | Msa0339670:CDS | 35.0% | |
| TGAAAGACTACAAAGTTTGG+GGG | - | chr2_4:60925383-60925402 | None:intergenic | 35.0% | |
| CATAGTCTCCTTAACTTCTT+TGG | + | chr2_4:60925401-60925420 | Msa0339670:intron | 35.0% | |
| CAAAGAAGCCAAAGAAGTTA+AGG | - | chr2_4:60925412-60925431 | None:intergenic | 35.0% | |
| TATGACAGTTAGCAATCTAG+AGG | + | chr2_4:60925570-60925589 | Msa0339670:intron | 35.0% | |
| ATGCAAATACCTGGAAGATA+AGG | - | chr2_4:60925704-60925723 | None:intergenic | 35.0% | |
| TGCATTTGTAAGAACAGACA+AGG | + | chr2_4:60925719-60925738 | Msa0339670:CDS | 35.0% | |
| !! | GACACTCATTTTTAAACGGA+GGG | - | chr2_4:60925836-60925855 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr2_4:60926085-60926104 | Msa0339670:intron | 35.0% |
| CAGCAATCAACTTCAAGATT+TGG | + | chr2_4:60926259-60926278 | Msa0339670:intron | 35.0% | |
| ! | CTTCAAGATTTGGTAGACAA+TGG | + | chr2_4:60926269-60926288 | Msa0339670:CDS | 35.0% |
| ! | TTTGGTAGACAATGGGTTTA+TGG | + | chr2_4:60926277-60926296 | Msa0339670:CDS | 35.0% |
| ! | TTGGTAGACAATGGGTTTAT+GGG | + | chr2_4:60926278-60926297 | Msa0339670:CDS | 35.0% |
| AGAAAATTTACAGCTCCCTT+TGG | - | chr2_4:60926333-60926352 | None:intergenic | 35.0% | |
| ACACTTATAGTTAGCAAGGA+AGG | + | chr2_4:60926450-60926469 | Msa0339670:three_prime_UTR | 35.0% | |
| AAGAGCTTCAAGGGTTTCTT+GGG | - | chr2_4:60923963-60923982 | None:intergenic | 40.0% | |
| AAAGAGCTTCAAGGGTTTCT+TGG | - | chr2_4:60923964-60923983 | None:intergenic | 40.0% | |
| CCTGAGAATAAAGAGCTTCA+AGG | - | chr2_4:60923973-60923992 | None:intergenic | 40.0% | |
| CCTTGAAGCTCTTTATTCTC+AGG | + | chr2_4:60923970-60923989 | Msa0339670:CDS | 40.0% | |
| GCATGGTGATCTTTGCTAAT+AGG | + | chr2_4:60924169-60924188 | Msa0339670:intron | 40.0% | |
| GTGATCTTTGCTAATAGGCA+AGG | + | chr2_4:60924174-60924193 | Msa0339670:intron | 40.0% | |
| GCAAGGGATGCATATTACAA+AGG | + | chr2_4:60924191-60924210 | Msa0339670:CDS | 40.0% | |
| AAGCATATGTGGTGAATTGG+GGG | - | chr2_4:60924268-60924287 | None:intergenic | 40.0% | |
| GAAGCATATGTGGTGAATTG+GGG | - | chr2_4:60924269-60924288 | None:intergenic | 40.0% | |
| GGTAACAGTTGAAGCTTAAG+TGG | + | chr2_4:60924338-60924357 | Msa0339670:intron | 40.0% | |
| CAGTTGAAGCTTAAGTGGTA+TGG | + | chr2_4:60924343-60924362 | Msa0339670:intron | 40.0% | |
| AGGATACTTCACAACTGACT+TGG | - | chr2_4:60924371-60924390 | None:intergenic | 40.0% | |
| ATCAATAAGGGTGATAGCCA+AGG | - | chr2_4:60924476-60924495 | None:intergenic | 40.0% | |
| CATATTGGGGAGAATGATGT+TGG | + | chr2_4:60924601-60924620 | Msa0339670:intron | 40.0% | |
| ! | TTTTTACATTAGCGAGTGCG+TGG | + | chr2_4:60924967-60924986 | Msa0339670:CDS | 40.0% |
| ! | TGCATTTGGTAGTTCAGCAA+TGG | + | chr2_4:60925001-60925020 | Msa0339670:CDS | 40.0% |
| ! | TTTGGTAGTTCAGCAATGGT+TGG | + | chr2_4:60925005-60925024 | Msa0339670:CDS | 40.0% |
| ! | TTGGTAGTTCAGCAATGGTT+GGG | + | chr2_4:60925006-60925025 | Msa0339670:CDS | 40.0% |
| ACCATTATCTTCATGGCACT+CGG | + | chr2_4:60925131-60925150 | Msa0339670:CDS | 40.0% | |
| !! | CGGTTTTGTCATAGGATATC+CGG | + | chr2_4:60925151-60925170 | Msa0339670:CDS | 40.0% |
| CCGACAGTTAAAACACTTCA+AGG | + | chr2_4:60925288-60925307 | Msa0339670:intron | 40.0% | |
| ! | AATGACTTGGCAGCACTAAA+GGG | + | chr2_4:60925321-60925340 | Msa0339670:CDS | 40.0% |
| AAGGGTTCATGTCCAAATTG+TGG | + | chr2_4:60925339-60925358 | Msa0339670:CDS | 40.0% | |
| ATGTCCAAATTGTGGAGAAG+AGG | + | chr2_4:60925347-60925366 | Msa0339670:CDS | 40.0% | |
| CTAACCTCTTCTCCACAATT+TGG | - | chr2_4:60925354-60925373 | None:intergenic | 40.0% | |
| AGTTGGATTCCTTATCTTCC+AGG | + | chr2_4:60925692-60925711 | Msa0339670:intron | 40.0% | |
| CCAATAAGCATTCACACACA+TGG | - | chr2_4:60925773-60925792 | None:intergenic | 40.0% | |
| CCATGTGTGTGAATGCTTAT+TGG | + | chr2_4:60925770-60925789 | Msa0339670:CDS | 40.0% | |
| !! | CGACACTCATTTTTAAACGG+AGG | - | chr2_4:60925837-60925856 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr2_4:60926089-60926108 | Msa0339670:intron | 40.0% |
| !! | GGAGTTGATATGTCAATCAC+TGG | + | chr2_4:60926471-60926490 | Msa0339670:three_prime_UTR | 40.0% |
| TACAAGATGGACCATGAGGA+CGG | - | chr2_4:60923913-60923932 | None:intergenic | 45.0% | |
| ATCCTCGTTGCAGTATCAGA+AGG | + | chr2_4:60924386-60924405 | Msa0339670:CDS | 45.0% | |
| ATCAACCTATGCTGATGCTG+AGG | + | chr2_4:60924411-60924430 | Msa0339670:CDS | 45.0% | |
| AATCACCTCAGCATCAGCAT+AGG | - | chr2_4:60924419-60924438 | None:intergenic | 45.0% | |
| ACTTCTTCTTTGCTCTGCCT+TGG | + | chr2_4:60924456-60924475 | Msa0339670:intron | 45.0% | |
| !! | TGGTTTTGCGGCGTTGAATT+AGG | + | chr2_4:60924706-60924725 | Msa0339670:intron | 45.0% |
| AGAGAAGGGAAAAAGGGGTA+GGG | - | chr2_4:60924876-60924895 | None:intergenic | 45.0% | |
| AAGAGAAGGGAAAAAGGGGT+AGG | - | chr2_4:60924877-60924896 | None:intergenic | 45.0% | |
| GAGGACTTAGTTGTGATGCT+TGG | - | chr2_4:60925097-60925116 | None:intergenic | 45.0% | |
| ACCGAGTGCCATGAAGATAA+TGG | - | chr2_4:60925135-60925154 | None:intergenic | 45.0% | |
| !! | ATGGCACTCGGTTTTGTCAT+AGG | + | chr2_4:60925143-60925162 | Msa0339670:CDS | 45.0% |
| AAACACTTCAAGGCTTGTGG+AGG | + | chr2_4:60925298-60925317 | Msa0339670:CDS | 45.0% | |
| ! | GAATGACTTGGCAGCACTAA+AGG | + | chr2_4:60925320-60925339 | Msa0339670:CDS | 45.0% |
| ACATGGCACTTTGCTCTATG+GGG | - | chr2_4:60925756-60925775 | None:intergenic | 45.0% | |
| CACATGGCACTTTGCTCTAT+GGG | - | chr2_4:60925757-60925776 | None:intergenic | 45.0% | |
| ACACATGGCACTTTGCTCTA+TGG | - | chr2_4:60925758-60925777 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr2_4:60926088-60926107 | Msa0339670:intron | 45.0% |
| TCTTGGGTGGCAGTTTGAAG+AGG | - | chr2_4:60923947-60923966 | None:intergenic | 50.0% | |
| AGCTTCAAGGGTTTCTTGGG+TGG | - | chr2_4:60923960-60923979 | None:intergenic | 50.0% | |
| TGCCTTCTGATACTGCAACG+AGG | - | chr2_4:60924391-60924410 | None:intergenic | 50.0% | |
| GAGAAGGGAAAAAGGGGTAG+GGG | - | chr2_4:60924875-60924894 | None:intergenic | 50.0% | |
| GAATGATGTGGATGTAGGGC+AGG | + | chr2_4:60924929-60924948 | Msa0339670:intron | 50.0% | |
| AGGGCAGGAAGATCTGTCTA+TGG | + | chr2_4:60924944-60924963 | Msa0339670:intron | 50.0% | |
| TTACCTGAGGCAGAAGCAAC+CGG | - | chr2_4:60925173-60925192 | None:intergenic | 50.0% | |
| AGGCTTGTGGAGGAATGACT+TGG | + | chr2_4:60925308-60925327 | Msa0339670:CDS | 50.0% | |
| GGAATTTCGCACCGAAGTTG+AGG | + | chr2_4:60925791-60925810 | Msa0339670:CDS | 50.0% | |
| TGCGTAAATCCAGACGCCAA+AGG | + | chr2_4:60926314-60926333 | Msa0339670:CDS | 50.0% | |
| GCGTAAATCCAGACGCCAAA+GGG | + | chr2_4:60926315-60926334 | Msa0339670:CDS | 50.0% | |
| AGCAACAGCAGCACCGCTTT+AGG | + | chr2_4:60923797-60923816 | Msa0339670:CDS | 55.0% | |
| ! | AACAGCAGCACCGCTTTAGG+TGG | + | chr2_4:60923800-60923819 | Msa0339670:CDS | 55.0% |
| ! | CACCGCTTTAGGTGGATGGA+CGG | + | chr2_4:60923808-60923827 | Msa0339670:CDS | 55.0% |
| CACCGTCCATCCACCTAAAG+CGG | - | chr2_4:60923813-60923832 | None:intergenic | 55.0% | |
| GGCAGAGATCCGAAGAGAGA+AGG | - | chr2_4:60923879-60923898 | None:intergenic | 55.0% | |
| TATCCGGTTGCTTCTGCCTC+AGG | + | chr2_4:60925167-60925186 | Msa0339670:CDS | 55.0% | |
| GGCGTCTGGATTTACGCACA+AGG | - | chr2_4:60926312-60926331 | None:intergenic | 55.0% | |
| TTACAGCTCCCTTTGGCGTC+TGG | - | chr2_4:60926326-60926345 | None:intergenic | 55.0% | |
| ! | GCAGCACCGCTTTAGGTGGA+TGG | + | chr2_4:60923804-60923823 | Msa0339670:CDS | 60.0% |
| ATGAGGACGGTCGTCGCAGG+TGG | - | chr2_4:60923900-60923919 | None:intergenic | 65.0% | |
| ACCTGCGACGACCGTCCTCA+TGG | + | chr2_4:60923899-60923918 | Msa0339670:CDS | 65.0% | |
| ACCATGAGGACGGTCGTCGC+AGG | - | chr2_4:60923903-60923922 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 60923748 | 60926608 | 60923748 | ID=Msa0339670;Name=Msa0339670 |
| chr2_4 | mRNA | 60923748 | 60926608 | 60923748 | ID=Msa0339670-mRNA-1;Parent=Msa0339670;Name=Msa0339670-mRNA-1;_AED=0.19;_eAED=0.19;_QI=28|1|1|1|1|1|7|263|286 |
| chr2_4 | exon | 60923748 | 60923991 | 60923748 | ID=Msa0339670-mRNA-1:exon:18991;Parent=Msa0339670-mRNA-1 |
| chr2_4 | exon | 60924191 | 60924253 | 60924191 | ID=Msa0339670-mRNA-1:exon:18992;Parent=Msa0339670-mRNA-1 |
| chr2_4 | exon | 60924346 | 60924432 | 60924346 | ID=Msa0339670-mRNA-1:exon:18993;Parent=Msa0339670-mRNA-1 |
| chr2_4 | exon | 60924951 | 60925188 | 60924951 | ID=Msa0339670-mRNA-1:exon:18994;Parent=Msa0339670-mRNA-1 |
| chr2_4 | exon | 60925295 | 60925368 | 60925295 | ID=Msa0339670-mRNA-1:exon:18995;Parent=Msa0339670-mRNA-1 |
| chr2_4 | exon | 60925714 | 60925812 | 60925714 | ID=Msa0339670-mRNA-1:exon:18996;Parent=Msa0339670-mRNA-1 |
| chr2_4 | exon | 60926262 | 60926608 | 60926262 | ID=Msa0339670-mRNA-1:exon:18997;Parent=Msa0339670-mRNA-1 |
| chr2_4 | five_prime_UTR | 60923748 | 60923775 | 60923748 | ID=Msa0339670-mRNA-1:five_prime_utr;Parent=Msa0339670-mRNA-1 |
| chr2_4 | CDS | 60923776 | 60923991 | 60923776 | ID=Msa0339670-mRNA-1:cds;Parent=Msa0339670-mRNA-1 |
| chr2_4 | CDS | 60924191 | 60924253 | 60924191 | ID=Msa0339670-mRNA-1:cds;Parent=Msa0339670-mRNA-1 |
| chr2_4 | CDS | 60924346 | 60924432 | 60924346 | ID=Msa0339670-mRNA-1:cds;Parent=Msa0339670-mRNA-1 |
| chr2_4 | CDS | 60924951 | 60925188 | 60924951 | ID=Msa0339670-mRNA-1:cds;Parent=Msa0339670-mRNA-1 |
| chr2_4 | CDS | 60925295 | 60925368 | 60925295 | ID=Msa0339670-mRNA-1:cds;Parent=Msa0339670-mRNA-1 |
| chr2_4 | CDS | 60925714 | 60925812 | 60925714 | ID=Msa0339670-mRNA-1:cds;Parent=Msa0339670-mRNA-1 |
| chr2_4 | CDS | 60926262 | 60926345 | 60926262 | ID=Msa0339670-mRNA-1:cds;Parent=Msa0339670-mRNA-1 |
| chr2_4 | three_prime_UTR | 60926346 | 60926608 | 60926346 | ID=Msa0339670-mRNA-1:three_prime_utr;Parent=Msa0339670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
