Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344130 | YP_009656514.1 | 84.483 | 870 | 25 | 6 | 1 | 760 | 187 | 1056 | 0.0 | 1446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344130 | sp|Q9BBS9|RPOB_LOTJA | 79.080 | 870 | 72 | 5 | 1 | 760 | 187 | 1056 | 0.0 | 1368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344130 | A0A6B9QAJ8 | 77.241 | 870 | 88 | 5 | 1 | 760 | 187 | 1056 | 0.0 | 1341 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0139830 | Msa0344130 | 0.840958 | 6.352313e-58 | -8.615850e-47 |
| Msa0268610 | Msa0344130 | 0.814705 | 1.344902e-51 | -8.615850e-47 |
| Msa0269030 | Msa0344130 | 0.827644 | 1.395789e-54 | -8.615850e-47 |
| Msa0344130 | Msa0484000 | 0.801389 | 9.215726e-49 | -8.615850e-47 |
| Msa0344130 | Msa0582670 | 0.811661 | 6.261539e-51 | -8.615850e-47 |
| Msa0344130 | Msa0582790 | 0.803452 | 3.463323e-49 | -8.615850e-47 |
| Msa0344130 | Msa1086110 | 0.822029 | 2.947423e-53 | -8.615850e-47 |
| Msa0344130 | Msa1086130 | 0.817373 | 3.410585e-52 | -8.615850e-47 |
| Msa0344130 | Msa1086220 | 0.826928 | 2.072895e-54 | -8.615850e-47 |
| Msa0344130 | Msa1143110 | 0.807196 | 5.687692e-50 | -8.615850e-47 |
| Msa0344130 | Msa1305150 | 0.830239 | 3.283791e-55 | -8.615850e-47 |
| Msa0344130 | Msa1354940 | 0.807649 | 4.558261e-50 | -8.615850e-47 |
| Msa0344130 | Msa1355110 | 0.821296 | 4.352941e-53 | -8.615850e-47 |
| Msa0344130 | Msa1380630 | 0.800651 | 1.303818e-48 | -8.615850e-47 |
| Msa0344130 | Msa1380700 | 0.807004 | 6.247418e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344130 | MtrunA17_Chr4g0016641 | 83.678 | 870 | 32 | 6 | 1 | 760 | 192 | 1061 | 0.0 | 1430 |
| Msa0344130 | MtrunA17_CPg0493041 | 83.678 | 870 | 32 | 6 | 1 | 760 | 192 | 1061 | 0.0 | 1430 |
| Msa0344130 | MtrunA17_Chr4g0015531 | 77.844 | 334 | 33 | 4 | 110 | 442 | 1 | 294 | 6.77e-173 | 499 |
| Msa0344130 | MtrunA17_Chr1g0159041 | 66.784 | 283 | 74 | 5 | 335 | 597 | 7 | 289 | 1.90e-111 | 341 |
| Msa0344130 | MtrunA17_Chr1g0159041 | 60.870 | 69 | 21 | 1 | 273 | 341 | 35 | 97 | 1.68e-15 | 78.6 |
| Msa0344130 | MtrunA17_Chr4g0015541 | 84.146 | 164 | 2 | 1 | 597 | 760 | 33 | 172 | 2.05e-84 | 270 |
| Msa0344130 | MtrunA17_Chr1g0159051 | 94.286 | 105 | 6 | 0 | 83 | 187 | 12 | 116 | 1.77e-61 | 202 |
| Msa0344130 | MtrunA17_Chr7g0247561 | 96.154 | 78 | 3 | 0 | 399 | 476 | 1 | 78 | 4.32e-48 | 164 |
| Msa0344130 | MtrunA17_Chr8g0345421 | 27.778 | 342 | 193 | 5 | 427 | 715 | 728 | 1068 | 2.22e-30 | 129 |
| Msa0344130 | MtrunA17_Chr1g0155911 | 26.254 | 339 | 200 | 7 | 427 | 715 | 782 | 1120 | 1.34e-27 | 120 |
| Msa0344130 | MtrunA17_Chr3g0136911 | 23.890 | 473 | 269 | 14 | 361 | 757 | 724 | 1181 | 3.46e-22 | 102 |
| Msa0344130 | MtrunA17_Chr8g0375171 | 23.830 | 470 | 273 | 13 | 361 | 757 | 722 | 1179 | 1.22e-21 | 100 |
| Msa0344130 | MtrunA17_Chr4g0015521 | 96.552 | 29 | 1 | 0 | 1 | 29 | 81 | 109 | 8.22e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0344130 | ATCG00190.1 | 76.491 | 872 | 93 | 5 | 1 | 760 | 187 | 1058 | 0.0 | 1328 |
| Msa0344130 | AT4G21710.1 | 25.888 | 394 | 227 | 9 | 427 | 755 | 779 | 1172 | 2.94e-28 | 122 |
| Msa0344130 | AT5G45140.2 | 26.065 | 399 | 221 | 10 | 427 | 753 | 754 | 1150 | 1.49e-27 | 120 |
| Msa0344130 | AT5G45140.1 | 26.065 | 399 | 221 | 10 | 427 | 753 | 754 | 1150 | 1.49e-27 | 120 |
| Msa0344130 | AT3G23780.1 | 23.869 | 398 | 233 | 8 | 431 | 758 | 769 | 1166 | 1.70e-22 | 104 |
| Msa0344130 | AT3G23780.2 | 23.869 | 398 | 233 | 8 | 431 | 758 | 769 | 1166 | 1.70e-22 | 104 |
| Msa0344130 | AT3G18090.1 | 24.060 | 399 | 232 | 9 | 431 | 758 | 651 | 1049 | 1.81e-21 | 100 |
| Msa0344130 | AT3G18090.2 | 24.731 | 186 | 119 | 2 | 431 | 595 | 651 | 836 | 5.16e-11 | 67.0 |
| Msa0344130 | AT3G18090.3 | 24.731 | 186 | 119 | 2 | 431 | 595 | 651 | 836 | 5.94e-11 | 66.6 |
Find 178 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAGAAAATTGAGTTATT+TGG | 0.135693 | 3_1:+2690049 | Msa0344130:CDS |
| TGTCTAAATTTCGGAGTAAA+TGG | 0.137285 | 3_1:-2691021 | None:intergenic |
| CATTTGATTGGAATGAAATT+TGG | 0.153768 | 3_1:+2689756 | Msa0344130:CDS |
| CTTGTTTCGCCCTTCCTTTA+AGG | 0.204769 | 3_1:-2691797 | None:intergenic |
| GTTACACAACAACCCCTTAA+AGG | 0.212213 | 3_1:+2691783 | Msa0344130:CDS |
| TTTCAACAAAGATGTGAATT+AGG | 0.219138 | 3_1:+2689636 | Msa0344130:CDS |
| TGGATTCGATGTTTGTTTAC+TGG | 0.222331 | 3_1:-2691598 | None:intergenic |
| ACATAAAGATTCAGGAAATA+TGG | 0.234879 | 3_1:-2689592 | None:intergenic |
| GTCAAAAGAAAATGCCATTT+TGG | 0.238441 | 3_1:+2689533 | Msa0344130:CDS |
| GAACGTTGATATCTAATTAA+TGG | 0.244746 | 3_1:-2690698 | None:intergenic |
| TTTGAACAGCCTGTTATAAT+AGG | 0.245428 | 3_1:+2691684 | Msa0344130:CDS |
| TGAATTAATTTCAAGATATA+AGG | 0.248171 | 3_1:-2691711 | None:intergenic |
| GGAATCAATGTAGGACTTAT+TGG | 0.263649 | 3_1:+2690167 | Msa0344130:CDS |
| ACGAGCTATACTTGGGATTC+AGG | 0.269809 | 3_1:+2691156 | Msa0344130:CDS |
| GATCTATTACAAGATCAATT+TGG | 0.270369 | 3_1:+2689837 | Msa0344130:CDS |
| GATTCATAAGTGGTTGTTAA+TGG | 0.270524 | 3_1:-2689960 | None:intergenic |
| CGATCTAAAACTTGAGATAA+TGG | 0.281648 | 3_1:-2689999 | None:intergenic |
| GGTCTTCCATCTTGCAAATA+AGG | 0.291965 | 3_1:-2691397 | None:intergenic |
| TTGTTTCGCCCTTCCTTTAA+GGG | 0.292882 | 3_1:-2691796 | None:intergenic |
| ATAATTCGAGGAACTATATC+TGG | 0.305120 | 3_1:+2689885 | Msa0344130:CDS |
| GCATCATTATGCTCGATAAA+AGG | 0.305503 | 3_1:-2690473 | None:intergenic |
| ATTCGTGAGGGTACCCCTAA+TGG | 0.306675 | 3_1:-2691439 | None:intergenic |
| GGGAGAAAATTGAGTTATTT+GGG | 0.307341 | 3_1:+2690050 | Msa0344130:CDS |
| TCAAATATTCCGCTCTTTCC+CGG | 0.314064 | 3_1:-2691642 | None:intergenic |
| AATTCCGTACATAAAGATTC+AGG | 0.323867 | 3_1:-2689600 | None:intergenic |
| CGCCAAGTGGCCTTAGATTC+AGG | 0.326928 | 3_1:+2690584 | Msa0344130:CDS |
| TGTTGGCGGTGAACTCGCTT+TGG | 0.329325 | 3_1:+2690811 | Msa0344130:CDS |
| CGCATTTACCTTTATGAACC+TGG | 0.329782 | 3_1:-2690751 | None:intergenic |
| AACGATCTTTCCTGCGTGTT+CGG | 0.330632 | 3_1:-2690621 | None:intergenic |
| GGAATATTTGATGGAAGAAC+AGG | 0.334674 | 3_1:+2691654 | Msa0344130:CDS |
| TCTGGAGCATCCACAGGTTT+AGG | 0.340865 | 3_1:-2691966 | None:intergenic |
| TCACGCAAGGATTGGTCCTT+GGG | 0.341088 | 3_1:+2690202 | Msa0344130:CDS |
| ACGAGCAATCGAAAAGATTC+TGG | 0.342745 | 3_1:-2691984 | None:intergenic |
| ATATGGTCTTCAACCCATTA+GGG | 0.343228 | 3_1:+2691425 | Msa0344130:CDS |
| GTCAAGCAGTTCCTCTTTCT+CGG | 0.344262 | 3_1:+2690528 | Msa0344130:CDS |
| CTGGGATCTTGGGTAGAAAC+AGG | 0.344385 | 3_1:+2691061 | Msa0344130:CDS |
| TCAGTCTTCGGTTCATATTT+CGG | 0.349155 | 3_1:-2689671 | None:intergenic |
| CCATGAACTATTTGGGTCAA+TGG | 0.354074 | 3_1:-2690029 | None:intergenic |
| GTACTCGGAACTACGATTAT+TGG | 0.356639 | 3_1:+2691933 | Msa0344130:CDS |
| CGGTCCGAAAAGTGCATTGT+TGG | 0.359288 | 3_1:+2690548 | Msa0344130:CDS |
| AGCGGGAACTCCTGAATCTA+AGG | 0.364603 | 3_1:-2690594 | None:intergenic |
| CGTTCGAGAACTACGATCTT+TGG | 0.364953 | 3_1:+2692004 | Msa0344130:CDS |
| TATGCTCGATAAAAGGAATC+AGG | 0.367331 | 3_1:-2690466 | None:intergenic |
| TTGTCGATAAAACTCCAAAA+TGG | 0.374690 | 3_1:-2689547 | None:intergenic |
| GAAGCTCCAATAGAAAATAT+TGG | 0.378418 | 3_1:-2690443 | None:intergenic |
| TCCGCTCTTTCCCGGATACT+CGG | 0.379405 | 3_1:-2691634 | None:intergenic |
| TTGGGTCCTGGAGGATTGAC+GGG | 0.382208 | 3_1:+2690068 | Msa0344130:CDS |
| ACAGCTGCGGATCATTTGAT+TGG | 0.389432 | 3_1:+2689744 | Msa0344130:CDS |
| GATATTTGAACCCGAGTATC+CGG | 0.389575 | 3_1:+2691623 | Msa0344130:CDS |
| GATATGGTCTTCAACCCATT+AGG | 0.395616 | 3_1:+2691424 | Msa0344130:CDS |
| GTTTGGGCGCTCGAGGGGTT+CGG | 0.396040 | 3_1:+2691846 | Msa0344130:CDS |
| GTTGGCGGTGAACTCGCTTT+GGG | 0.396452 | 3_1:+2690812 | Msa0344130:CDS |
| AGATGGAAGACCCGTTGATA+TGG | 0.398344 | 3_1:+2691408 | Msa0344130:CDS |
| ATTCCTTCCGAGGTGTCAAT+TGG | 0.403361 | 3_1:-2690149 | None:intergenic |
| AGATTATTACGAGCTATACT+TGG | 0.409704 | 3_1:+2691148 | Msa0344130:CDS |
| TGTAGGACTTATTGGATCCT+TGG | 0.411030 | 3_1:+2690175 | Msa0344130:CDS |
| GAAAAGTGCATTGTTGGAAC+TGG | 0.419529 | 3_1:+2690554 | Msa0344130:CDS |
| TTCACGCAAGGATTGGTCCT+TGG | 0.420745 | 3_1:+2690201 | Msa0344130:CDS |
| TTTGGGTCCTGGAGGATTGA+CGG | 0.423824 | 3_1:+2690067 | Msa0344130:CDS |
| GAATTGTGATTCTGGGATCT+TGG | 0.426630 | 3_1:+2691050 | Msa0344130:CDS |
| ATGGAGGTTTGGGCGCTCGA+GGG | 0.426714 | 3_1:+2691840 | Msa0344130:CDS |
| GTCTAAATTTCGGAGTAAAT+GGG | 0.428736 | 3_1:-2691020 | None:intergenic |
| TATGTCTTTCCTCAATGAAA+AGG | 0.429238 | 3_1:+2689494 | Msa0344130:CDS |
| AACTATTTGGGTCAATGGAT+TGG | 0.429624 | 3_1:-2690024 | None:intergenic |
| GCCGGGAGACATGGAAATAA+AGG | 0.429982 | 3_1:+2691340 | Msa0344130:CDS |
| GTATATCAATGTTCAGTCTT+CGG | 0.430453 | 3_1:-2689683 | None:intergenic |
| CCATTGACCCAAATAGTTCA+TGG | 0.431227 | 3_1:+2690029 | Msa0344130:CDS |
| AAGTAGAGATGAATACTATA+TGG | 0.431841 | 3_1:+2690294 | Msa0344130:CDS |
| TTCGTGAGGGTACCCCTAAT+GGG | 0.434009 | 3_1:-2691438 | None:intergenic |
| ATTATAACAGGCTGTTCAAA+AGG | 0.436541 | 3_1:-2691681 | None:intergenic |
| AGGACAACGGGTAGGCGAAA+TGG | 0.436703 | 3_1:+2691821 | Msa0344130:CDS |
| GAGGATTCTTTCGCCATTTG+AGG | 0.441108 | 3_1:-2691109 | None:intergenic |
| CATAAAGATTCAGGAAATAT+GGG | 0.442441 | 3_1:-2689591 | None:intergenic |
| GATATCCATCCTAGTCACTA+TGG | 0.449002 | 3_1:+2690116 | Msa0344130:CDS |
| ACCTTTATTTCCATGTCTCC+CGG | 0.449391 | 3_1:-2691341 | None:intergenic |
| AAATTGAGTTATTTGGGTCC+TGG | 0.453699 | 3_1:+2690056 | Msa0344130:CDS |
| AATGGAGGTTTGGGCGCTCG+AGG | 0.461267 | 3_1:+2691839 | Msa0344130:CDS |
| GCTCGTAATAATCTATCTTC+CGG | 0.462719 | 3_1:-2691139 | None:intergenic |
| GGTAGGCGAAATGGAGGTTT+GGG | 0.465784 | 3_1:+2691830 | Msa0344130:CDS |
| GGGTAGGCGAAATGGAGGTT+TGG | 0.465926 | 3_1:+2691829 | Msa0344130:CDS |
| GGGTAAATTAACGCCTCAAA+TGG | 0.467677 | 3_1:+2691096 | Msa0344130:CDS |
| GATCTAAAACTTGAGATAAT+GGG | 0.468332 | 3_1:-2689998 | None:intergenic |
| GGAAAGAGCGGAATATTTGA+TGG | 0.469164 | 3_1:+2691645 | Msa0344130:CDS |
| ATTACAAGATCAATTTGGAT+TGG | 0.471878 | 3_1:+2689842 | Msa0344130:CDS |
| CCGCTCTTTCCCGGATACTC+GGG | 0.478316 | 3_1:-2691633 | None:intergenic |
| GGCGAAACAAGGAGGACAAC+GGG | 0.481846 | 3_1:+2691809 | Msa0344130:CDS |
| CCTGCGTGTTCGGCTATAGC+GGG | 0.483049 | 3_1:-2690611 | None:intergenic |
| CGTTTAGAAAATATAATTCG+AGG | 0.485783 | 3_1:+2689873 | Msa0344130:CDS |
| AATTGTGATTCTGGGATCTT+GGG | 0.486220 | 3_1:+2691051 | Msa0344130:CDS |
| AGATGTGAATTAGGAGGGAT+TGG | 0.486416 | 3_1:+2689645 | Msa0344130:CDS |
| ATTGGAATGAAATTTGGAAT+GGG | 0.491267 | 3_1:+2689762 | Msa0344130:CDS |
| CAACAAAGATGTGAATTAGG+AGG | 0.492034 | 3_1:+2689639 | Msa0344130:CDS |
| ATTTCCTGAATCTTTATGTA+CGG | 0.495836 | 3_1:+2689596 | Msa0344130:CDS |
| TTGGCAATTCACGCAAGGAT+TGG | 0.498707 | 3_1:+2690194 | Msa0344130:CDS |
| GATTGGAATGAAATTTGGAA+TGG | 0.498930 | 3_1:+2689761 | Msa0344130:CDS |
| CAAGTTGATGATAAAATACA+TGG | 0.502523 | 3_1:+2691735 | Msa0344130:CDS |
| GTGCATTGTTGGAACTGGAT+TGG | 0.504759 | 3_1:+2690559 | Msa0344130:CDS |
| TGGAGGTTTGGGCGCTCGAG+GGG | 0.505858 | 3_1:+2691841 | Msa0344130:CDS |
| CTCCTGAATCTAAGGCCACT+TGG | 0.506387 | 3_1:-2690586 | None:intergenic |
| TGTACTCATTAGTGAACGTC+TGG | 0.512500 | 3_1:+2690889 | Msa0344130:CDS |
| AACAAAGATGTGAATTAGGA+GGG | 0.512939 | 3_1:+2689640 | Msa0344130:CDS |
| AGAACTACGATCTTTGGCTC+TGG | 0.513829 | 3_1:+2692010 | Msa0344130:CDS |
| GTTCGCCCCGTCAATCCTCC+AGG | 0.515843 | 3_1:-2690074 | None:intergenic |
| GATATGCCTTATTTGCAAGA+TGG | 0.518600 | 3_1:+2691391 | Msa0344130:CDS |
| TATTAGTAGCTTATATGCCA+TGG | 0.519177 | 3_1:+2690843 | Msa0344130:CDS |
| GTAAACAAACATCGAATCCA+TGG | 0.519391 | 3_1:+2691601 | Msa0344130:CDS |
| CAGAAACGTGAAATTAAAGT+AGG | 0.520965 | 3_1:+2691307 | Msa0344130:intron |
| ATATAGTATTCATCTCTACT+TGG | 0.523407 | 3_1:-2690292 | None:intergenic |
| CGACAATTTGCTTGTGTAGG+CGG | 0.527978 | 3_1:+2689564 | Msa0344130:CDS |
| AAAGTAGGTGATAAAGTGGC+CGG | 0.529519 | 3_1:+2691322 | Msa0344130:CDS |
| GCATTTACCTTTATGAACCT+GGG | 0.530323 | 3_1:-2690750 | None:intergenic |
| AAAGATTCTGGAGCATCCAC+AGG | 0.531781 | 3_1:-2691972 | None:intergenic |
| GCAGATGGTGCTGCTACTGT+TGG | 0.531919 | 3_1:+2690794 | Msa0344130:CDS |
| GATAAAGTGGCCGGGAGACA+TGG | 0.532845 | 3_1:+2691331 | Msa0344130:CDS |
| GGGTTGAAGACCATATCAAC+GGG | 0.535156 | 3_1:-2691418 | None:intergenic |
| CACAACAACCCCTTAAAGGA+AGG | 0.535519 | 3_1:+2691787 | Msa0344130:CDS |
| TAATCTATCTTCCGGAGCAT+AGG | 0.540322 | 3_1:-2691131 | None:intergenic |
| TCTATCTTCCGGAGCATAGG+AGG | 0.540370 | 3_1:-2691128 | None:intergenic |
| TACTCGGGTTCAAATATCCA+TGG | 0.546454 | 3_1:-2691618 | None:intergenic |
| TCCTGCGTGTTCGGCTATAG+CGG | 0.549505 | 3_1:-2690612 | None:intergenic |
| TAGTGATTCTTTCAGGACCA+TGG | 0.551937 | 3_1:-2690976 | None:intergenic |
| GATGGTGCTGCTACTGTTGG+CGG | 0.553778 | 3_1:+2690797 | Msa0344130:CDS |
| TATCGACAATTTGCTTGTGT+AGG | 0.554239 | 3_1:+2689561 | Msa0344130:CDS |
| CTCCAATAGAAAATATTGGA+AGG | 0.555677 | 3_1:-2690439 | None:intergenic |
| CATTGACCCAAATAGTTCAT+GGG | 0.556065 | 3_1:+2690030 | Msa0344130:CDS |
| GATTATTACGAGCTATACTT+GGG | 0.558504 | 3_1:+2691149 | Msa0344130:CDS |
| CTCGGAACTACGATTATTGG+AGG | 0.559077 | 3_1:+2691936 | Msa0344130:CDS |
| ATCTTGTAATAGATCTGCTA+CGG | 0.559735 | 3_1:-2689829 | None:intergenic |
| GTCACTAAATTCTGAGGAGT+AGG | 0.563396 | 3_1:-2689930 | None:intergenic |
| GGAAGTCTTTCTCAGATACA+AGG | 0.565963 | 3_1:-2692047 | None:intergenic |
| AACAAGTGCATAATGTCCAC+TGG | 0.566338 | 3_1:-2691763 | None:intergenic |
| TGTTTCGCCCTTCCTTTAAG+GGG | 0.567625 | 3_1:-2691795 | None:intergenic |
| GAAAGAATCCTCCTATGCTC+CGG | 0.570879 | 3_1:+2691120 | Msa0344130:CDS |
| TCCTACATTGATTCCTTCCG+AGG | 0.572209 | 3_1:-2690159 | None:intergenic |
| CAAATGCGTCCATAGTGACT+AGG | 0.573493 | 3_1:-2690125 | None:intergenic |
| TCCAATAGAAAATATTGGAA+GGG | 0.576425 | 3_1:-2690438 | None:intergenic |
| CTTAAAGGAAGGGCGAAACA+AGG | 0.579473 | 3_1:+2691798 | Msa0344130:CDS |
| AATTAAAGTAGGTGATAAAG+TGG | 0.581077 | 3_1:+2691318 | Msa0344130:CDS |
| ATATTTGAACCCGAGTATCC+GGG | 0.581389 | 3_1:+2691624 | Msa0344130:CDS |
| CAGACTCATGTGACAAGCCA+TGG | 0.581560 | 3_1:+2690959 | Msa0344130:CDS |
| CTGTCCTACATTCATTCGTG+AGG | 0.583153 | 3_1:-2691452 | None:intergenic |
| AGTAAATGGGCTTCTAGATG+TGG | 0.584284 | 3_1:-2691007 | None:intergenic |
| CCCGAGTATCCGGGAAAGAG+CGG | 0.584519 | 3_1:+2691633 | Msa0344130:CDS |
| TGTCCAATTGACACCTCGGA+AGG | 0.584582 | 3_1:+2690146 | Msa0344130:CDS |
| GTCTTTCCTCAATGAAAAGG+AGG | 0.586724 | 3_1:+2689497 | Msa0344130:CDS |
| ATGCTCGATAAAAGGAATCA+GGG | 0.587469 | 3_1:-2690465 | None:intergenic |
| TGGGATCTTGGGTAGAAACA+GGG | 0.592045 | 3_1:+2691062 | Msa0344130:CDS |
| TCAGAATTGTAACCTTCCCA+TGG | 0.596416 | 3_1:-2690860 | None:intergenic |
| ATTAGTAGCTTATATGCCAT+GGG | 0.596673 | 3_1:+2690844 | Msa0344130:CDS |
| AAGTAGGTGATAAAGTGGCC+GGG | 0.597954 | 3_1:+2691323 | Msa0344130:CDS |
| GGGCGAAACAAGGAGGACAA+CGG | 0.598993 | 3_1:+2691808 | Msa0344130:CDS |
| CACGCAAGGATTGGTCCTTG+GGG | 0.608804 | 3_1:+2690203 | Msa0344130:CDS |
| GTAGCTTATATGCCATGGGA+AGG | 0.611195 | 3_1:+2690848 | Msa0344130:CDS |
| TGTCCTACATTCATTCGTGA+GGG | 0.611498 | 3_1:-2691451 | None:intergenic |
| GATCCTTGGCAATTCACGCA+AGG | 0.614349 | 3_1:+2690189 | Msa0344130:CDS |
| AAAATACATGGACGTTCCAG+TGG | 0.614997 | 3_1:+2691747 | Msa0344130:CDS |
| AACTGGATTGGAACGCCAAG+TGG | 0.615266 | 3_1:+2690571 | Msa0344130:CDS |
| GTTGAAGTCACTAAATTCTG+AGG | 0.617323 | 3_1:-2689936 | None:intergenic |
| AATCCTTGCGTGAATTGCCA+AGG | 0.621341 | 3_1:-2690192 | None:intergenic |
| CATTTGTCCAATTGACACCT+CGG | 0.622149 | 3_1:+2690142 | Msa0344130:CDS |
| TGGGTTGAAGACCATATCAA+CGG | 0.622611 | 3_1:-2691419 | None:intergenic |
| TGCGTCCATAGTGACTAGGA+TGG | 0.626242 | 3_1:-2690121 | None:intergenic |
| AAACAAGGAGGACAACGGGT+AGG | 0.626804 | 3_1:+2691813 | Msa0344130:CDS |
| ACGCAAGGATTGGTCCTTGG+GGG | 0.629421 | 3_1:+2690204 | Msa0344130:CDS |
| TTGAGTTATTTGGGTCCTGG+AGG | 0.630319 | 3_1:+2690059 | Msa0344130:CDS |
| TGGGTCCTGGAGGATTGACG+GGG | 0.631061 | 3_1:+2690069 | Msa0344130:CDS |
| GGGATCTTGGGTAGAAACAG+GGG | 0.635116 | 3_1:+2691063 | Msa0344130:CDS |
| ACAACAACCCCTTAAAGGAA+GGG | 0.636584 | 3_1:+2691788 | Msa0344130:CDS |
| ACCTCGGAAGGAATCAATGT+AGG | 0.642821 | 3_1:+2690158 | Msa0344130:CDS |
| AGGAACAATACCTAAACCTG+TGG | 0.656849 | 3_1:+2691956 | Msa0344130:CDS |
| AAAGCTCGTCAAGAAGTACT+CGG | 0.659322 | 3_1:+2691918 | Msa0344130:CDS |
| ACAACGGGTAGGCGAAATGG+AGG | 0.659407 | 3_1:+2691824 | Msa0344130:CDS |
| TATGGTCTTCAACCCATTAG+GGG | 0.670295 | 3_1:+2691426 | Msa0344130:CDS |
| CCCGCTATAGCCGAACACGC+AGG | 0.684746 | 3_1:+2690611 | Msa0344130:CDS |
| GAATATTTGATGGAAGAACA+GGG | 0.689025 | 3_1:+2691655 | Msa0344130:CDS |
| GCGAGATATATTGACAGCTG+CGG | 0.702124 | 3_1:+2689731 | Msa0344130:CDS |
| GCAGCTGTCAATATATCTCG+CGG | 0.702925 | 3_1:-2689729 | None:intergenic |
| AAAGGAAGGGCGAAACAAGG+AGG | 0.708508 | 3_1:+2691801 | Msa0344130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTAATTTCAAGATATA+AGG | - | chr3_1:2691714-2691733 | None:intergenic | 15.0% |
| !! | AAAAGGAGGAAAAAAAAATA+GGG | + | chr3_1:2689511-2689530 | Msa0344130:CDS | 20.0% |
| !! | TAACAAAAATGTATTGTTCT+CGG | - | chr3_1:2689709-2689728 | None:intergenic | 20.0% |
| !!! | AAGATCATTTTATTTGGAAA+TGG | + | chr3_1:2690659-2690678 | Msa0344130:CDS | 20.0% |
| !!! | AGATCATTTTATTTGGAAAT+GGG | + | chr3_1:2690660-2690679 | Msa0344130:CDS | 20.0% |
| !!! | ATTTTATTAGTGATTCTTTC+AGG | - | chr3_1:2690986-2691005 | None:intergenic | 20.0% |
| !!! | TTCCATTTTTGTCTAAATTT+CGG | - | chr3_1:2691033-2691052 | None:intergenic | 20.0% |
| !! | ATATATATATGAATCGTTTC+TGG | - | chr3_1:2691283-2691302 | None:intergenic | 20.0% |
| ! | AGGAAAGACATAAAAATTTC+GGG | - | chr3_1:2689486-2689505 | None:intergenic | 25.0% |
| ! | GAGGAAAGACATAAAAATTT+CGG | - | chr3_1:2689487-2689506 | None:intergenic | 25.0% |
| ! | GAAAAGGAGGAAAAAAAAAT+AGG | + | chr3_1:2689510-2689529 | Msa0344130:CDS | 25.0% |
| ! | CATAAAGATTCAGGAAATAT+GGG | - | chr3_1:2689594-2689613 | None:intergenic | 25.0% |
| ! | ACATAAAGATTCAGGAAATA+TGG | - | chr3_1:2689595-2689614 | None:intergenic | 25.0% |
| ! | ATTTCCTGAATCTTTATGTA+CGG | + | chr3_1:2689596-2689615 | Msa0344130:CDS | 25.0% |
| ! | TTTCAACAAAGATGTGAATT+AGG | + | chr3_1:2689636-2689655 | Msa0344130:CDS | 25.0% |
| ! | AACAAAAATGTATTGTTCTC+GGG | - | chr3_1:2689708-2689727 | None:intergenic | 25.0% |
| ! | CATTTGATTGGAATGAAATT+TGG | + | chr3_1:2689756-2689775 | Msa0344130:CDS | 25.0% |
| !! | ATTGGAATGAAATTTGGAAT+GGG | + | chr3_1:2689762-2689781 | Msa0344130:CDS | 25.0% |
| ! | GATCTATTACAAGATCAATT+TGG | + | chr3_1:2689837-2689856 | Msa0344130:CDS | 25.0% |
| ! | ATTACAAGATCAATTTGGAT+TGG | + | chr3_1:2689842-2689861 | Msa0344130:CDS | 25.0% |
| ! | CGTTTAGAAAATATAATTCG+AGG | + | chr3_1:2689873-2689892 | Msa0344130:CDS | 25.0% |
| !! | GATCTAAAACTTGAGATAAT+GGG | - | chr3_1:2690001-2690020 | None:intergenic | 25.0% |
| ! | TCTCTCAGAAATTTCAAAAA+TGG | - | chr3_1:2690242-2690261 | None:intergenic | 25.0% |
| ! | ATATAGTATTCATCTCTACT+TGG | - | chr3_1:2690295-2690314 | None:intergenic | 25.0% |
| ! | AAGTAGAGATGAATACTATA+TGG | + | chr3_1:2690294-2690313 | Msa0344130:CDS | 25.0% |
| ! | CAATAGTTAGAAATTCTTGA+CGG | - | chr3_1:2690387-2690406 | None:intergenic | 25.0% |
| ! | AAGAATTTCTAACTATTGCA+TGG | + | chr3_1:2690389-2690408 | Msa0344130:intron | 25.0% |
| ! | AGAATTTCTAACTATTGCAT+GGG | + | chr3_1:2690390-2690409 | Msa0344130:intron | 25.0% |
| ! | TCCAATAGAAAATATTGGAA+GGG | - | chr3_1:2690441-2690460 | None:intergenic | 25.0% |
| !! | ACTGACAAGATCATTTTATT+TGG | + | chr3_1:2690653-2690672 | Msa0344130:CDS | 25.0% |
| ! | GAACGTTGATATCTAATTAA+TGG | - | chr3_1:2690701-2690720 | None:intergenic | 25.0% |
| ! | TAAAGGTAAATGCGTAAAAA+AGG | + | chr3_1:2690760-2690779 | Msa0344130:CDS | 25.0% |
| ! | AAAGGTAAATGCGTAAAAAA+GGG | + | chr3_1:2690761-2690780 | Msa0344130:CDS | 25.0% |
| ! | AAAAATGGAATTGTGATTCT+GGG | + | chr3_1:2691043-2691062 | Msa0344130:CDS | 25.0% |
| ! | AATTAAAGTAGGTGATAAAG+TGG | + | chr3_1:2691318-2691337 | Msa0344130:CDS | 25.0% |
| !! | TAAGGTTTTCCTATTATAAC+AGG | - | chr3_1:2691696-2691715 | None:intergenic | 25.0% |
| !!! | CAAGTTGATGATAAAATACA+TGG | + | chr3_1:2691735-2691754 | Msa0344130:CDS | 25.0% |
| GGAAAGACATAAAAATTTCG+GGG | - | chr3_1:2689485-2689504 | None:intergenic | 30.0% | |
| TATGTCTTTCCTCAATGAAA+AGG | + | chr3_1:2689494-2689513 | Msa0344130:CDS | 30.0% | |
| !!! | TTTTTTCCTCCTTTTCATTG+AGG | - | chr3_1:2689506-2689525 | None:intergenic | 30.0% |
| !! | GTCAAAAGAAAATGCCATTT+TGG | + | chr3_1:2689533-2689552 | Msa0344130:CDS | 30.0% |
| TTGTCGATAAAACTCCAAAA+TGG | - | chr3_1:2689550-2689569 | None:intergenic | 30.0% | |
| AATTCCGTACATAAAGATTC+AGG | - | chr3_1:2689603-2689622 | None:intergenic | 30.0% | |
| AACAAAGATGTGAATTAGGA+GGG | + | chr3_1:2689640-2689659 | Msa0344130:CDS | 30.0% | |
| GTATATCAATGTTCAGTCTT+CGG | - | chr3_1:2689686-2689705 | None:intergenic | 30.0% | |
| GATTGGAATGAAATTTGGAA+TGG | + | chr3_1:2689761-2689780 | Msa0344130:CDS | 30.0% | |
| ATCTTGTAATAGATCTGCTA+CGG | - | chr3_1:2689832-2689851 | None:intergenic | 30.0% | |
| ATAATTCGAGGAACTATATC+TGG | + | chr3_1:2689885-2689904 | Msa0344130:CDS | 30.0% | |
| GATTCATAAGTGGTTGTTAA+TGG | - | chr3_1:2689963-2689982 | None:intergenic | 30.0% | |
| !!! | ACCACTTATGAATCGTTTTT+TGG | + | chr3_1:2689969-2689988 | Msa0344130:CDS | 30.0% |
| TCCAAAAAACGATTCATAAG+TGG | - | chr3_1:2689973-2689992 | None:intergenic | 30.0% | |
| ! | CGATCTAAAACTTGAGATAA+TGG | - | chr3_1:2690002-2690021 | None:intergenic | 30.0% |
| ! | TTTTCTCCCATGAACTATTT+GGG | - | chr3_1:2690039-2690058 | None:intergenic | 30.0% |
| ! | ATTTTCTCCCATGAACTATT+TGG | - | chr3_1:2690040-2690059 | None:intergenic | 30.0% |
| TGGGAGAAAATTGAGTTATT+TGG | + | chr3_1:2690049-2690068 | Msa0344130:CDS | 30.0% | |
| GGGAGAAAATTGAGTTATTT+GGG | + | chr3_1:2690050-2690069 | Msa0344130:CDS | 30.0% | |
| !!! | AATTTTTTAGCACTGAATCG+AGG | + | chr3_1:2690328-2690347 | Msa0344130:intron | 30.0% |
| ! | TCCCTTCCAATATTTTCTAT+TGG | + | chr3_1:2690437-2690456 | Msa0344130:CDS | 30.0% |
| CTCCAATAGAAAATATTGGA+AGG | - | chr3_1:2690442-2690461 | None:intergenic | 30.0% | |
| GAAGCTCCAATAGAAAATAT+TGG | - | chr3_1:2690446-2690465 | None:intergenic | 30.0% | |
| !! | ATGCATGCAAGTATTTTTGT+TGG | - | chr3_1:2690723-2690742 | None:intergenic | 30.0% |
| TATTAGTAGCTTATATGCCA+TGG | + | chr3_1:2690843-2690862 | Msa0344130:CDS | 30.0% | |
| ATTAGTAGCTTATATGCCAT+GGG | + | chr3_1:2690844-2690863 | Msa0344130:CDS | 30.0% | |
| GTCTAAATTTCGGAGTAAAT+GGG | - | chr3_1:2691023-2691042 | None:intergenic | 30.0% | |
| TGTCTAAATTTCGGAGTAAA+TGG | - | chr3_1:2691024-2691043 | None:intergenic | 30.0% | |
| CTCCGAAATTTAGACAAAAA+TGG | + | chr3_1:2691028-2691047 | Msa0344130:CDS | 30.0% | |
| CAAAAATGGAATTGTGATTC+TGG | + | chr3_1:2691042-2691061 | Msa0344130:CDS | 30.0% | |
| AGATTATTACGAGCTATACT+TGG | + | chr3_1:2691148-2691167 | Msa0344130:CDS | 30.0% | |
| GATTATTACGAGCTATACTT+GGG | + | chr3_1:2691149-2691168 | Msa0344130:CDS | 30.0% | |
| ! | TTTTAGACAAGTTTCCTTTG+AGG | - | chr3_1:2691188-2691207 | None:intergenic | 30.0% |
| ! | ACTTGTCTAAAACTACCTAT+AGG | + | chr3_1:2691196-2691215 | Msa0344130:intron | 30.0% |
| CAGAAACGTGAAATTAAAGT+AGG | + | chr3_1:2691307-2691326 | Msa0344130:intron | 30.0% | |
| ! | TTCAAAGATTTTGTCTAGAC+AGG | + | chr3_1:2691369-2691388 | Msa0344130:CDS | 30.0% |
| AATGAATGTAGGACAGATAT+TGG | + | chr3_1:2691459-2691478 | Msa0344130:intron | 30.0% | |
| ! | TTCAGAAAACACAAGTTTTC+TGG | - | chr3_1:2691568-2691587 | None:intergenic | 30.0% |
| GAATATTTGATGGAAGAACA+GGG | + | chr3_1:2691655-2691674 | Msa0344130:CDS | 30.0% | |
| ATTATAACAGGCTGTTCAAA+AGG | - | chr3_1:2691684-2691703 | None:intergenic | 30.0% | |
| TTTGAACAGCCTGTTATAAT+AGG | + | chr3_1:2691684-2691703 | Msa0344130:CDS | 30.0% | |
| ! | TATCGACAATTTGCTTGTGT+AGG | + | chr3_1:2689561-2689580 | Msa0344130:CDS | 35.0% |
| CAACAAAGATGTGAATTAGG+AGG | + | chr3_1:2689639-2689658 | Msa0344130:CDS | 35.0% | |
| TCAGTCTTCGGTTCATATTT+CGG | - | chr3_1:2689674-2689693 | None:intergenic | 35.0% | |
| GTTGAAGTCACTAAATTCTG+AGG | - | chr3_1:2689939-2689958 | None:intergenic | 35.0% | |
| AACTATTTGGGTCAATGGAT+TGG | - | chr3_1:2690027-2690046 | None:intergenic | 35.0% | |
| CATTGACCCAAATAGTTCAT+GGG | + | chr3_1:2690030-2690049 | Msa0344130:CDS | 35.0% | |
| AAATTGAGTTATTTGGGTCC+TGG | + | chr3_1:2690056-2690075 | Msa0344130:CDS | 35.0% | |
| GGAATCAATGTAGGACTTAT+TGG | + | chr3_1:2690167-2690186 | Msa0344130:CDS | 35.0% | |
| ! | TGAATACTATATGGTAGCGA+CGG | + | chr3_1:2690303-2690322 | Msa0344130:intron | 35.0% |
| ATGCTCGATAAAAGGAATCA+GGG | - | chr3_1:2690468-2690487 | None:intergenic | 35.0% | |
| TATGCTCGATAAAAGGAATC+AGG | - | chr3_1:2690469-2690488 | None:intergenic | 35.0% | |
| GCATCATTATGCTCGATAAA+AGG | - | chr3_1:2690476-2690495 | None:intergenic | 35.0% | |
| ! | AGTTCCAACAATGCACTTTT+CGG | - | chr3_1:2690555-2690574 | None:intergenic | 35.0% |
| CAAAAATCCCAGGTTCATAA+AGG | + | chr3_1:2690743-2690762 | Msa0344130:CDS | 35.0% | |
| GCATTTACCTTTATGAACCT+GGG | - | chr3_1:2690753-2690772 | None:intergenic | 35.0% | |
| !! | AAGGGACAAATTTTAGCAGA+TGG | + | chr3_1:2690779-2690798 | Msa0344130:CDS | 35.0% |
| !! | AATTGTGATTCTGGGATCTT+GGG | + | chr3_1:2691051-2691070 | Msa0344130:CDS | 35.0% |
| !! | AGAAACAGGGGATATTTTAG+TGG | + | chr3_1:2691075-2691094 | Msa0344130:CDS | 35.0% |
| !!! | GAAACAGGGGATATTTTAGT+GGG | + | chr3_1:2691076-2691095 | Msa0344130:CDS | 35.0% |
| GCTCGTAATAATCTATCTTC+CGG | - | chr3_1:2691142-2691161 | None:intergenic | 35.0% | |
| ! | TGTCTAAAACTACCTATAGG+TGG | + | chr3_1:2691199-2691218 | Msa0344130:intron | 35.0% |
| TAAAACTACCTATAGGTGGT+AGG | + | chr3_1:2691203-2691222 | Msa0344130:intron | 35.0% | |
| AAAACTACCTATAGGTGGTA+GGG | + | chr3_1:2691204-2691223 | Msa0344130:intron | 35.0% | |
| TCCATCTCACATCAATAACT+CGG | - | chr3_1:2691231-2691250 | None:intergenic | 35.0% | |
| AGATGGATCCAAAAAAAAGC+AGG | + | chr3_1:2691244-2691263 | Msa0344130:intron | 35.0% | |
| !!! | AGCTAGAACCTGCTTTTTTT+TGG | - | chr3_1:2691255-2691274 | None:intergenic | 35.0% |
| !! | GATATGCCTTATTTGCAAGA+TGG | + | chr3_1:2691391-2691410 | Msa0344130:CDS | 35.0% |
| ATATGGTCTTCAACCCATTA+GGG | + | chr3_1:2691425-2691444 | Msa0344130:CDS | 35.0% | |
| CAGATATTGGAATGTTCACT+CGG | + | chr3_1:2691472-2691491 | Msa0344130:intron | 35.0% | |
| CTGTTCATATCTCTCATCAA+AGG | - | chr3_1:2691538-2691557 | None:intergenic | 35.0% | |
| CTTTGATGAGAGATATGAAC+AGG | + | chr3_1:2691536-2691555 | Msa0344130:intron | 35.0% | |
| TGGATTCGATGTTTGTTTAC+TGG | - | chr3_1:2691601-2691620 | None:intergenic | 35.0% | |
| GTAAACAAACATCGAATCCA+TGG | + | chr3_1:2691601-2691620 | Msa0344130:CDS | 35.0% | |
| GGAATATTTGATGGAAGAAC+AGG | + | chr3_1:2691654-2691673 | Msa0344130:CDS | 35.0% | |
| GTCTTTCCTCAATGAAAAGG+AGG | + | chr3_1:2689497-2689516 | Msa0344130:CDS | 40.0% | |
| AGATGTGAATTAGGAGGGAT+TGG | + | chr3_1:2689645-2689664 | Msa0344130:CDS | 40.0% | |
| ! | GTCACTAAATTCTGAGGAGT+AGG | - | chr3_1:2689933-2689952 | None:intergenic | 40.0% |
| CCATGAACTATTTGGGTCAA+TGG | - | chr3_1:2690032-2690051 | None:intergenic | 40.0% | |
| CCATTGACCCAAATAGTTCA+TGG | + | chr3_1:2690029-2690048 | Msa0344130:CDS | 40.0% | |
| !!! | GAACTGCTAGTTTTCGGATA+CGG | + | chr3_1:2690093-2690112 | Msa0344130:CDS | 40.0% |
| !!! | AACTGCTAGTTTTCGGATAC+GGG | + | chr3_1:2690094-2690113 | Msa0344130:CDS | 40.0% |
| GATATCCATCCTAGTCACTA+TGG | + | chr3_1:2690116-2690135 | Msa0344130:CDS | 40.0% | |
| CATTTGTCCAATTGACACCT+CGG | + | chr3_1:2690142-2690161 | Msa0344130:CDS | 40.0% | |
| TGTAGGACTTATTGGATCCT+TGG | + | chr3_1:2690175-2690194 | Msa0344130:CDS | 40.0% | |
| ! | GAATACTATATGGTAGCGAC+GGG | + | chr3_1:2690304-2690323 | Msa0344130:intron | 40.0% |
| TCTAACTATTGCATGGGAAC+AGG | + | chr3_1:2690396-2690415 | Msa0344130:intron | 40.0% | |
| ! | GAAAAGTGCATTGTTGGAAC+TGG | + | chr3_1:2690554-2690573 | Msa0344130:CDS | 40.0% |
| TTGCATGCATCAAAAATCCC+AGG | + | chr3_1:2690733-2690752 | Msa0344130:CDS | 40.0% | |
| CGCATTTACCTTTATGAACC+TGG | - | chr3_1:2690754-2690773 | None:intergenic | 40.0% | |
| TCAGAATTGTAACCTTCCCA+TGG | - | chr3_1:2690863-2690882 | None:intergenic | 40.0% | |
| TGTACTCATTAGTGAACGTC+TGG | + | chr3_1:2690889-2690908 | Msa0344130:CDS | 40.0% | |
| TAGTGATTCTTTCAGGACCA+TGG | - | chr3_1:2690979-2690998 | None:intergenic | 40.0% | |
| ! | AGTAAATGGGCTTCTAGATG+TGG | - | chr3_1:2691010-2691029 | None:intergenic | 40.0% |
| !! | GAATTGTGATTCTGGGATCT+TGG | + | chr3_1:2691050-2691069 | Msa0344130:CDS | 40.0% |
| GGGTAAATTAACGCCTCAAA+TGG | + | chr3_1:2691096-2691115 | Msa0344130:CDS | 40.0% | |
| TAATCTATCTTCCGGAGCAT+AGG | - | chr3_1:2691134-2691153 | None:intergenic | 40.0% | |
| AAACTACCTATAGGTGGTAG+GGG | + | chr3_1:2691205-2691224 | Msa0344130:intron | 40.0% | |
| AAAGTAGGTGATAAAGTGGC+CGG | + | chr3_1:2691322-2691341 | Msa0344130:CDS | 40.0% | |
| ! | ACCTTTATTTCCATGTCTCC+CGG | - | chr3_1:2691344-2691363 | None:intergenic | 40.0% |
| GGTCTTCCATCTTGCAAATA+AGG | - | chr3_1:2691400-2691419 | None:intergenic | 40.0% | |
| ! | TGGGTTGAAGACCATATCAA+CGG | - | chr3_1:2691422-2691441 | None:intergenic | 40.0% |
| GATATGGTCTTCAACCCATT+AGG | + | chr3_1:2691424-2691443 | Msa0344130:CDS | 40.0% | |
| TATGGTCTTCAACCCATTAG+GGG | + | chr3_1:2691426-2691445 | Msa0344130:CDS | 40.0% | |
| TGTCCTACATTCATTCGTGA+GGG | - | chr3_1:2691454-2691473 | None:intergenic | 40.0% | |
| !! | AATGTTCACTCGGATTAGCT+GGG | + | chr3_1:2691482-2691501 | Msa0344130:intron | 40.0% |
| TGATGAGAGATATGAACAGG+AGG | + | chr3_1:2691539-2691558 | Msa0344130:intron | 40.0% | |
| TACTCGGGTTCAAATATCCA+TGG | - | chr3_1:2691621-2691640 | None:intergenic | 40.0% | |
| GATATTTGAACCCGAGTATC+CGG | + | chr3_1:2691623-2691642 | Msa0344130:CDS | 40.0% | |
| ATATTTGAACCCGAGTATCC+GGG | + | chr3_1:2691624-2691643 | Msa0344130:CDS | 40.0% | |
| TCAAATATTCCGCTCTTTCC+CGG | - | chr3_1:2691645-2691664 | None:intergenic | 40.0% | |
| GGAAAGAGCGGAATATTTGA+TGG | + | chr3_1:2691645-2691664 | Msa0344130:CDS | 40.0% | |
| AAAATACATGGACGTTCCAG+TGG | + | chr3_1:2691747-2691766 | Msa0344130:CDS | 40.0% | |
| AACAAGTGCATAATGTCCAC+TGG | - | chr3_1:2691766-2691785 | None:intergenic | 40.0% | |
| GTTACACAACAACCCCTTAA+AGG | + | chr3_1:2691783-2691802 | Msa0344130:CDS | 40.0% | |
| ACAACAACCCCTTAAAGGAA+GGG | + | chr3_1:2691788-2691807 | Msa0344130:CDS | 40.0% | |
| TTGTTTCGCCCTTCCTTTAA+GGG | - | chr3_1:2691799-2691818 | None:intergenic | 40.0% | |
| !! | AAAGCTCGTCAAGAAGTACT+CGG | + | chr3_1:2691918-2691937 | Msa0344130:CDS | 40.0% |
| GTACTCGGAACTACGATTAT+TGG | + | chr3_1:2691933-2691952 | Msa0344130:CDS | 40.0% | |
| AGGAACAATACCTAAACCTG+TGG | + | chr3_1:2691956-2691975 | Msa0344130:CDS | 40.0% | |
| ACGAGCAATCGAAAAGATTC+TGG | - | chr3_1:2691987-2692006 | None:intergenic | 40.0% | |
| ! | CGACAATTTGCTTGTGTAGG+CGG | + | chr3_1:2689564-2689583 | Msa0344130:CDS | 45.0% |
| GCAGCTGTCAATATATCTCG+CGG | - | chr3_1:2689732-2689751 | None:intergenic | 45.0% | |
| GCGAGATATATTGACAGCTG+CGG | + | chr3_1:2689731-2689750 | Msa0344130:CDS | 45.0% | |
| ACAGCTGCGGATCATTTGAT+TGG | + | chr3_1:2689744-2689763 | Msa0344130:CDS | 45.0% | |
| TTGAGTTATTTGGGTCCTGG+AGG | + | chr3_1:2690059-2690078 | Msa0344130:CDS | 45.0% | |
| CAAATGCGTCCATAGTGACT+AGG | - | chr3_1:2690128-2690147 | None:intergenic | 45.0% | |
| ! | ATTCCTTCCGAGGTGTCAAT+TGG | - | chr3_1:2690152-2690171 | None:intergenic | 45.0% |
| ACCTCGGAAGGAATCAATGT+AGG | + | chr3_1:2690158-2690177 | Msa0344130:CDS | 45.0% | |
| !! | TCCTACATTGATTCCTTCCG+AGG | - | chr3_1:2690162-2690181 | None:intergenic | 45.0% |
| AATCCTTGCGTGAATTGCCA+AGG | - | chr3_1:2690195-2690214 | None:intergenic | 45.0% | |
| TTGGCAATTCACGCAAGGAT+TGG | + | chr3_1:2690194-2690213 | Msa0344130:CDS | 45.0% | |
| ! | AGCACTGAATCGAGGTATTC+AGG | + | chr3_1:2690336-2690355 | Msa0344130:intron | 45.0% |
| ! | ACTGAATCGAGGTATTCAGG+AGG | + | chr3_1:2690339-2690358 | Msa0344130:intron | 45.0% |
| ! | AATTCTTGACGGTATCGAGC+TGG | - | chr3_1:2690376-2690395 | None:intergenic | 45.0% |
| GTCAAGCAGTTCCTCTTTCT+CGG | + | chr3_1:2690528-2690547 | Msa0344130:CDS | 45.0% | |
| GTGCATTGTTGGAACTGGAT+TGG | + | chr3_1:2690559-2690578 | Msa0344130:CDS | 45.0% | |
| AACGATCTTTCCTGCGTGTT+CGG | - | chr3_1:2690624-2690643 | None:intergenic | 45.0% | |
| GTAGCTTATATGCCATGGGA+AGG | + | chr3_1:2690848-2690867 | Msa0344130:CDS | 45.0% | |
| TGGGATCTTGGGTAGAAACA+GGG | + | chr3_1:2691062-2691081 | Msa0344130:CDS | 45.0% | |
| GAGGATTCTTTCGCCATTTG+AGG | - | chr3_1:2691112-2691131 | None:intergenic | 45.0% | |
| GAAAGAATCCTCCTATGCTC+CGG | + | chr3_1:2691120-2691139 | Msa0344130:CDS | 45.0% | |
| ACGAGCTATACTTGGGATTC+AGG | + | chr3_1:2691156-2691175 | Msa0344130:CDS | 45.0% | |
| !! | GATTCAGGTATCGACCTCAA+AGG | + | chr3_1:2691171-2691190 | Msa0344130:intron | 45.0% |
| GCCGAGTTATTGATGTGAGA+TGG | + | chr3_1:2691227-2691246 | Msa0344130:intron | 45.0% | |
| AAGTAGGTGATAAAGTGGCC+GGG | + | chr3_1:2691323-2691342 | Msa0344130:CDS | 45.0% | |
| AGATGGAAGACCCGTTGATA+TGG | + | chr3_1:2691408-2691427 | Msa0344130:CDS | 45.0% | |
| GGGTTGAAGACCATATCAAC+GGG | - | chr3_1:2691421-2691440 | None:intergenic | 45.0% | |
| GTACCCTCACGAATGAATGT+AGG | + | chr3_1:2691448-2691467 | Msa0344130:intron | 45.0% | |
| CTGTCCTACATTCATTCGTG+AGG | - | chr3_1:2691455-2691474 | None:intergenic | 45.0% | |
| !! | GAATGTTCACTCGGATTAGC+TGG | + | chr3_1:2691481-2691500 | Msa0344130:intron | 45.0% |
| CACAACAACCCCTTAAAGGA+AGG | + | chr3_1:2691787-2691806 | Msa0344130:CDS | 45.0% | |
| TGTTTCGCCCTTCCTTTAAG+GGG | - | chr3_1:2691798-2691817 | None:intergenic | 45.0% | |
| CTTGTTTCGCCCTTCCTTTA+AGG | - | chr3_1:2691800-2691819 | None:intergenic | 45.0% | |
| CTTAAAGGAAGGGCGAAACA+AGG | + | chr3_1:2691798-2691817 | Msa0344130:CDS | 45.0% | |
| CTCGGAACTACGATTATTGG+AGG | + | chr3_1:2691936-2691955 | Msa0344130:CDS | 45.0% | |
| !! | AAAGATTCTGGAGCATCCAC+AGG | - | chr3_1:2691975-2691994 | None:intergenic | 45.0% |
| CGTTCGAGAACTACGATCTT+TGG | + | chr3_1:2692004-2692023 | Msa0344130:CDS | 45.0% | |
| ! | AGAACTACGATCTTTGGCTC+TGG | + | chr3_1:2692010-2692029 | Msa0344130:CDS | 45.0% |
| TTTGGGTCCTGGAGGATTGA+CGG | + | chr3_1:2690067-2690086 | Msa0344130:CDS | 50.0% | |
| TGCGTCCATAGTGACTAGGA+TGG | - | chr3_1:2690124-2690143 | None:intergenic | 50.0% | |
| TGTCCAATTGACACCTCGGA+AGG | + | chr3_1:2690146-2690165 | Msa0344130:CDS | 50.0% | |
| GATCCTTGGCAATTCACGCA+AGG | + | chr3_1:2690189-2690208 | Msa0344130:CDS | 50.0% | |
| !! | TTCACGCAAGGATTGGTCCT+TGG | + | chr3_1:2690201-2690220 | Msa0344130:CDS | 50.0% |
| !! | TCACGCAAGGATTGGTCCTT+GGG | + | chr3_1:2690202-2690221 | Msa0344130:CDS | 50.0% |
| GGACTTTCTATAGACCCCCA+AGG | - | chr3_1:2690221-2690240 | None:intergenic | 50.0% | |
| ! | CACTTTTCGGACCGAGAAAG+AGG | - | chr3_1:2690542-2690561 | None:intergenic | 50.0% |
| ! | CGGTCCGAAAAGTGCATTGT+TGG | + | chr3_1:2690548-2690567 | Msa0344130:CDS | 50.0% |
| ! | AACTGGATTGGAACGCCAAG+TGG | + | chr3_1:2690571-2690590 | Msa0344130:CDS | 50.0% |
| ! | CTCCTGAATCTAAGGCCACT+TGG | - | chr3_1:2690589-2690608 | None:intergenic | 50.0% |
| AGCGGGAACTCCTGAATCTA+AGG | - | chr3_1:2690597-2690616 | None:intergenic | 50.0% | |
| CAGACTCATGTGACAAGCCA+TGG | + | chr3_1:2690959-2690978 | Msa0344130:CDS | 50.0% | |
| CTGGGATCTTGGGTAGAAAC+AGG | + | chr3_1:2691061-2691080 | Msa0344130:CDS | 50.0% | |
| GGGATCTTGGGTAGAAACAG+GGG | + | chr3_1:2691063-2691082 | Msa0344130:CDS | 50.0% | |
| TCTATCTTCCGGAGCATAGG+AGG | - | chr3_1:2691131-2691150 | None:intergenic | 50.0% | |
| GCCGGGAGACATGGAAATAA+AGG | + | chr3_1:2691340-2691359 | Msa0344130:CDS | 50.0% | |
| !! | TTCGTGAGGGTACCCCTAAT+GGG | - | chr3_1:2691441-2691460 | None:intergenic | 50.0% |
| !! | ATTCGTGAGGGTACCCCTAA+TGG | - | chr3_1:2691442-2691461 | None:intergenic | 50.0% |
| AAAGGAAGGGCGAAACAAGG+AGG | + | chr3_1:2691801-2691820 | Msa0344130:CDS | 50.0% | |
| AAACAAGGAGGACAACGGGT+AGG | + | chr3_1:2691813-2691832 | Msa0344130:CDS | 50.0% | |
| GGTAGGCGAAATGGAGGTTT+GGG | + | chr3_1:2691830-2691849 | Msa0344130:CDS | 50.0% | |
| ! | TCTGGAGCATCCACAGGTTT+AGG | - | chr3_1:2691969-2691988 | None:intergenic | 50.0% |
| TTGGGTCCTGGAGGATTGAC+GGG | + | chr3_1:2690068-2690087 | Msa0344130:CDS | 55.0% | |
| !!! | CGGGGCGAACTGCTAGTTTT+CGG | + | chr3_1:2690087-2690106 | Msa0344130:CDS | 55.0% |
| !! | CACGCAAGGATTGGTCCTTG+GGG | + | chr3_1:2690203-2690222 | Msa0344130:CDS | 55.0% |
| !! | ACGCAAGGATTGGTCCTTGG+GGG | + | chr3_1:2690204-2690223 | Msa0344130:CDS | 55.0% |
| ! | CGCCAAGTGGCCTTAGATTC+AGG | + | chr3_1:2690584-2690603 | Msa0344130:CDS | 55.0% |
| TCCTGCGTGTTCGGCTATAG+CGG | - | chr3_1:2690615-2690634 | None:intergenic | 55.0% | |
| !! | GCAGATGGTGCTGCTACTGT+TGG | + | chr3_1:2690794-2690813 | Msa0344130:CDS | 55.0% |
| !! | GATGGTGCTGCTACTGTTGG+CGG | + | chr3_1:2690797-2690816 | Msa0344130:CDS | 55.0% |
| TGTTGGCGGTGAACTCGCTT+TGG | + | chr3_1:2690811-2690830 | Msa0344130:CDS | 55.0% | |
| GTTGGCGGTGAACTCGCTTT+GGG | + | chr3_1:2690812-2690831 | Msa0344130:CDS | 55.0% | |
| GATAAAGTGGCCGGGAGACA+TGG | + | chr3_1:2691331-2691350 | Msa0344130:CDS | 55.0% | |
| TCCGCTCTTTCCCGGATACT+CGG | - | chr3_1:2691637-2691656 | None:intergenic | 55.0% | |
| GGGCGAAACAAGGAGGACAA+CGG | + | chr3_1:2691808-2691827 | Msa0344130:CDS | 55.0% | |
| GGCGAAACAAGGAGGACAAC+GGG | + | chr3_1:2691809-2691828 | Msa0344130:CDS | 55.0% | |
| AGGACAACGGGTAGGCGAAA+TGG | + | chr3_1:2691821-2691840 | Msa0344130:CDS | 55.0% | |
| ACAACGGGTAGGCGAAATGG+AGG | + | chr3_1:2691824-2691843 | Msa0344130:CDS | 55.0% | |
| GGGTAGGCGAAATGGAGGTT+TGG | + | chr3_1:2691829-2691848 | Msa0344130:CDS | 55.0% | |
| TGGGTCCTGGAGGATTGACG+GGG | + | chr3_1:2690069-2690088 | Msa0344130:CDS | 60.0% | |
| CCTGCGTGTTCGGCTATAGC+GGG | - | chr3_1:2690614-2690633 | None:intergenic | 60.0% | |
| ACTCGGCCCCTACCACCTAT+AGG | - | chr3_1:2691214-2691233 | None:intergenic | 60.0% | |
| CCGCTCTTTCCCGGATACTC+GGG | - | chr3_1:2691636-2691655 | None:intergenic | 60.0% | |
| CCCGAGTATCCGGGAAAGAG+CGG | + | chr3_1:2691633-2691652 | Msa0344130:CDS | 60.0% | |
| AATGGAGGTTTGGGCGCTCG+AGG | + | chr3_1:2691839-2691858 | Msa0344130:CDS | 60.0% | |
| ATGGAGGTTTGGGCGCTCGA+GGG | + | chr3_1:2691840-2691859 | Msa0344130:CDS | 60.0% | |
| GTTCGCCCCGTCAATCCTCC+AGG | - | chr3_1:2690077-2690096 | None:intergenic | 65.0% | |
| CCCGCTATAGCCGAACACGC+AGG | + | chr3_1:2690611-2690630 | Msa0344130:CDS | 65.0% | |
| TGGAGGTTTGGGCGCTCGAG+GGG | + | chr3_1:2691841-2691860 | Msa0344130:CDS | 65.0% | |
| GTTTGGGCGCTCGAGGGGTT+CGG | + | chr3_1:2691846-2691865 | Msa0344130:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 2689441 | 2692058 | 2689441 | ID=Msa0344130;Name=Msa0344130 |
| chr3_1 | mRNA | 2689441 | 2692058 | 2689441 | ID=Msa0344130-mRNA-1;Parent=Msa0344130;Name=Msa0344130-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|4|0|763 |
| chr3_1 | exon | 2689441 | 2690315 | 2689441 | ID=Msa0344130-mRNA-1:exon:836;Parent=Msa0344130-mRNA-1 |
| chr3_1 | exon | 2690418 | 2691177 | 2690418 | ID=Msa0344130-mRNA-1:exon:837;Parent=Msa0344130-mRNA-1 |
| chr3_1 | exon | 2691310 | 2691465 | 2691310 | ID=Msa0344130-mRNA-1:exon:838;Parent=Msa0344130-mRNA-1 |
| chr3_1 | exon | 2691558 | 2692058 | 2691558 | ID=Msa0344130-mRNA-1:exon:839;Parent=Msa0344130-mRNA-1 |
| chr3_1 | CDS | 2689441 | 2690315 | 2689441 | ID=Msa0344130-mRNA-1:cds;Parent=Msa0344130-mRNA-1 |
| chr3_1 | CDS | 2690418 | 2691177 | 2690418 | ID=Msa0344130-mRNA-1:cds;Parent=Msa0344130-mRNA-1 |
| chr3_1 | CDS | 2691310 | 2691465 | 2691310 | ID=Msa0344130-mRNA-1:cds;Parent=Msa0344130-mRNA-1 |
| chr3_1 | CDS | 2691558 | 2692058 | 2691558 | ID=Msa0344130-mRNA-1:cds;Parent=Msa0344130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
