AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1086220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086220 MtrunA17_Chr4g0016641 94.344 884 6 1 1 840 192 1075 0.0 1699
Msa1086220 MtrunA17_CPg0493041 94.344 884 6 1 1 840 192 1075 0.0 1699
Msa1086220 MtrunA17_Chr4g0015531 78.804 368 4 3 110 477 1 294 0.0 561
Msa1086220 MtrunA17_Chr1g0159041 69.289 394 41 3 280 665 1 322 1.03e-179 519
Msa1086220 MtrunA17_Chr4g0015541 87.619 210 2 1 631 840 1 186 5.05e-120 365
Msa1086220 MtrunA17_Chr1g0159051 94.286 105 6 0 83 187 12 116 2.25e-61 202
Msa1086220 MtrunA17_Chr7g0247561 96.154 78 3 0 434 511 1 78 1.19e-47 163
Msa1086220 MtrunA17_Chr8g0345421 27.696 408 235 7 462 821 728 1123 1.41e-35 145
Msa1086220 MtrunA17_Chr1g0155911 26.836 354 210 6 462 781 782 1120 4.83e-35 144
Msa1086220 MtrunA17_Chr3g0136911 25.314 478 287 14 396 823 724 1181 3.18e-28 122
Msa1086220 MtrunA17_Chr8g0375171 25.105 478 288 14 396 823 722 1179 8.19e-28 121
Msa1086220 MtrunA17_Chr4g0069391 26.005 373 232 8 462 806 786 1142 5.86e-27 118
Msa1086220 MtrunA17_Chr3g0142431 27.381 252 146 6 594 823 2 238 7.14e-18 84.0
Msa1086220 MtrunA17_Chr4g0015521 96.552 29 1 0 1 29 81 109 8.19e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086220 ATCG00190.1 85.553 886 82 2 1 840 187 1072 0.0 1563
Msa1086220 AT4G21710.1 26.406 409 237 8 462 821 779 1172 7.39e-36 147
Msa1086220 AT5G45140.2 26.650 409 237 8 462 819 754 1150 2.56e-33 139
Msa1086220 AT5G45140.1 26.650 409 237 8 462 819 754 1150 2.56e-33 139
Msa1086220 AT3G23780.1 24.939 413 241 9 466 824 769 1166 1.03e-25 114
Msa1086220 AT3G23780.2 24.939 413 241 9 466 824 769 1166 1.03e-25 114
Msa1086220 AT3G18090.1 24.877 406 251 8 466 824 651 1049 3.82e-25 112
Msa1086220 AT1G29940.1 25.706 354 208 11 466 782 756 1091 5.89e-24 109
Msa1086220 AT3G18090.2 25.888 197 125 2 466 641 651 847 1.12e-13 75.9
Msa1086220 AT3G18090.3 25.758 198 126 2 466 642 651 848 1.28e-13 75.5

Find 194 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGAGAAAATTGAGTTATT+TGG 0.135693 7_2:-87241356 Msa1086220:CDS
TGTCTAAATTTCGGAGTAAA+TGG 0.137285 7_2:+87240381 None:intergenic
CATTTGATTGGAATGAAATT+TGG 0.153768 7_2:-87241649 Msa1086220:CDS
CTTGTTTCGCCCTTCCTTTA+AGG 0.204769 7_2:+87239606 None:intergenic
GTTACACAACAACCCCTTAA+AGG 0.212213 7_2:-87239620 Msa1086220:CDS
TTTCAACAAAGATGTGAATT+AGG 0.219138 7_2:-87241769 Msa1086220:CDS
TGGATTCGATGTTTGTTTAC+TGG 0.222331 7_2:+87239805 None:intergenic
ACATAAAGATTCAGGAAATA+TGG 0.234879 7_2:+87241813 None:intergenic
GTCAAAAGAAAATGCCATTT+TGG 0.238441 7_2:-87241872 Msa1086220:CDS
GAACGTTGATATCTAATTAA+TGG 0.244746 7_2:+87240704 None:intergenic
TTTGAACAGCCTGTTATAAT+AGG 0.245428 7_2:-87239719 Msa1086220:CDS
TGAATTAATTTCAAGATATA+AGG 0.248171 7_2:+87239692 None:intergenic
GGAATCAATGTAGGACTTAT+TGG 0.263649 7_2:-87241238 Msa1086220:CDS
ACGAGCTATACTTGGGATTC+AGG 0.269809 7_2:-87240246 Msa1086220:intron
AGCACTGAATCGAGGTATTC+AGG 0.270037 7_2:-87241068 Msa1086220:CDS
GATCTATTACAAGATCAATT+TGG 0.270369 7_2:-87241568 Msa1086220:CDS
GATTCATAAGTGGTTGTTAA+TGG 0.270524 7_2:+87241445 None:intergenic
CGATCTAAAACTTGAGATAA+TGG 0.281648 7_2:+87241406 None:intergenic
GGTCTTCCATCTTGCAAATA+AGG 0.291965 7_2:+87240007 None:intergenic
TTGTTTCGCCCTTCCTTTAA+GGG 0.292882 7_2:+87239607 None:intergenic
ATAATTCGAGGAACTATATC+TGG 0.305120 7_2:-87241520 Msa1086220:CDS
GCATCATTATGCTCGATAAA+AGG 0.305503 7_2:+87240929 None:intergenic
ATTCGTGAGGGTACCCCTAA+TGG 0.306675 7_2:+87239965 None:intergenic
GGGAGAAAATTGAGTTATTT+GGG 0.307341 7_2:-87241355 Msa1086220:CDS
TCAAATATTCCGCTCTTTCC+CGG 0.314064 7_2:+87239761 None:intergenic
AATTCCGTACATAAAGATTC+AGG 0.323867 7_2:+87241805 None:intergenic
CGCCAAGTGGCCTTAGATTC+AGG 0.326928 7_2:-87240818 Msa1086220:CDS
TGTTGGCGGTGAACTCGCTT+TGG 0.329325 7_2:-87240591 Msa1086220:CDS
CGCATTTACCTTTATGAACC+TGG 0.329782 7_2:+87240651 None:intergenic
AACGATCTTTCCTGCGTGTT+CGG 0.330632 7_2:+87240781 None:intergenic
GGAATATTTGATGGAAGAAC+AGG 0.334674 7_2:-87239749 Msa1086220:CDS
AATGAATGTAGGACAGATAT+TGG 0.340082 7_2:-87239945 Msa1086220:CDS
AAACTTCCTTCCTTTGAATC+TGG 0.340714 7_2:+87239336 None:intergenic
TCTGGAGCATCCACAGGTTT+AGG 0.340865 7_2:+87239437 None:intergenic
TCACGCAAGGATTGGTCCTT+GGG 0.341088 7_2:-87241203 Msa1086220:CDS
ACGAGCAATCGAAAAGATTC+TGG 0.342745 7_2:+87239419 None:intergenic
ATATGGTCTTCAACCCATTA+GGG 0.343228 7_2:-87239979 Msa1086220:CDS
GTCAAGCAGTTCCTCTTTCT+CGG 0.344262 7_2:-87240874 Msa1086220:CDS
CTGGGATCTTGGGTAGAAAC+AGG 0.344385 7_2:-87240341 Msa1086220:CDS
TCAGTCTTCGGTTCATATTT+CGG 0.349155 7_2:+87241734 None:intergenic
CCATGAACTATTTGGGTCAA+TGG 0.354074 7_2:+87241376 None:intergenic
GTACTCGGAACTACGATTAT+TGG 0.356639 7_2:-87239470 Msa1086220:CDS
CGGTCCGAAAAGTGCATTGT+TGG 0.359288 7_2:-87240854 Msa1086220:CDS
AGCGGGAACTCCTGAATCTA+AGG 0.364603 7_2:+87240808 None:intergenic
CGTTCGAGAACTACGATCTT+TGG 0.364953 7_2:-87239399 Msa1086220:CDS
TATGCTCGATAAAAGGAATC+AGG 0.367331 7_2:+87240936 None:intergenic
TTGTCGATAAAACTCCAAAA+TGG 0.374690 7_2:+87241858 None:intergenic
TCCGCTCTTTCCCGGATACT+CGG 0.379405 7_2:+87239769 None:intergenic
TTGGGTCCTGGAGGATTGAC+GGG 0.382208 7_2:-87241337 Msa1086220:CDS
GAATGTTCACTCGGATTAGC+TGG 0.386652 7_2:-87239923 Msa1086220:CDS
ACAGCTGCGGATCATTTGAT+TGG 0.389432 7_2:-87241661 Msa1086220:CDS
GATATTTGAACCCGAGTATC+CGG 0.389575 7_2:-87239780 Msa1086220:CDS
GATATGGTCTTCAACCCATT+AGG 0.395616 7_2:-87239980 Msa1086220:CDS
GTTTGGGCGCTCGAGGGGTT+CGG 0.396040 7_2:-87239557 Msa1086220:CDS
GTTGGCGGTGAACTCGCTTT+GGG 0.396452 7_2:-87240590 Msa1086220:CDS
AGATGGAAGACCCGTTGATA+TGG 0.398344 7_2:-87239996 Msa1086220:CDS
ATTCCTTCCGAGGTGTCAAT+TGG 0.403361 7_2:+87241256 None:intergenic
AGATTATTACGAGCTATACT+TGG 0.409704 7_2:-87240254 Msa1086220:CDS
TGTAGGACTTATTGGATCCT+TGG 0.411030 7_2:-87241230 Msa1086220:CDS
TCTAACTATTGCATGGGAAC+AGG 0.414074 7_2:-87241008 Msa1086220:CDS
GAAAAGTGCATTGTTGGAAC+TGG 0.419529 7_2:-87240848 Msa1086220:CDS
TTCACGCAAGGATTGGTCCT+TGG 0.420745 7_2:-87241204 Msa1086220:CDS
TTTGGGTCCTGGAGGATTGA+CGG 0.423824 7_2:-87241338 Msa1086220:CDS
GAATTGTGATTCTGGGATCT+TGG 0.426630 7_2:-87240352 Msa1086220:CDS
ATGGAGGTTTGGGCGCTCGA+GGG 0.426714 7_2:-87239563 Msa1086220:CDS
GTCTAAATTTCGGAGTAAAT+GGG 0.428736 7_2:+87240382 None:intergenic
TATGTCTTTCCTCAATGAAA+AGG 0.429238 7_2:-87241911 Msa1086220:CDS
AACTATTTGGGTCAATGGAT+TGG 0.429624 7_2:+87241381 None:intergenic
GCCGGGAGACATGGAAATAA+AGG 0.429982 7_2:-87240064 Msa1086220:CDS
GTATATCAATGTTCAGTCTT+CGG 0.430453 7_2:+87241722 None:intergenic
CCATTGACCCAAATAGTTCA+TGG 0.431227 7_2:-87241376 Msa1086220:CDS
AAGTAGAGATGAATACTATA+TGG 0.431841 7_2:-87241110 Msa1086220:CDS
TTCGTGAGGGTACCCCTAAT+GGG 0.434009 7_2:+87239966 None:intergenic
ATTATAACAGGCTGTTCAAA+AGG 0.436541 7_2:+87239722 None:intergenic
AGGACAACGGGTAGGCGAAA+TGG 0.436703 7_2:-87239582 Msa1086220:CDS
GAGGATTCTTTCGCCATTTG+AGG 0.441108 7_2:+87240293 None:intergenic
CATAAAGATTCAGGAAATAT+GGG 0.442441 7_2:+87241814 None:intergenic
GATATCCATCCTAGTCACTA+TGG 0.449002 7_2:-87241289 Msa1086220:CDS
ACCTTTATTTCCATGTCTCC+CGG 0.449391 7_2:+87240063 None:intergenic
AAATTGAGTTATTTGGGTCC+TGG 0.453699 7_2:-87241349 Msa1086220:CDS
AATGGAGGTTTGGGCGCTCG+AGG 0.461267 7_2:-87239564 Msa1086220:CDS
GCTCGTAATAATCTATCTTC+CGG 0.462719 7_2:+87240263 None:intergenic
GGTAGGCGAAATGGAGGTTT+GGG 0.465784 7_2:-87239573 Msa1086220:CDS
GGGTAGGCGAAATGGAGGTT+TGG 0.465926 7_2:-87239574 Msa1086220:CDS
GGGTAAATTAACGCCTCAAA+TGG 0.467677 7_2:-87240306 Msa1086220:CDS
GATCTAAAACTTGAGATAAT+GGG 0.468332 7_2:+87241407 None:intergenic
GGAAAGAGCGGAATATTTGA+TGG 0.469164 7_2:-87239758 Msa1086220:CDS
ATTACAAGATCAATTTGGAT+TGG 0.471878 7_2:-87241563 Msa1086220:CDS
CCGCTCTTTCCCGGATACTC+GGG 0.478316 7_2:+87239770 None:intergenic
AAGAATTTCTAACTATTGCA+TGG 0.481440 7_2:-87241015 Msa1086220:CDS
GGCGAAACAAGGAGGACAAC+GGG 0.481846 7_2:-87239594 Msa1086220:CDS
CCTGCGTGTTCGGCTATAGC+GGG 0.483049 7_2:+87240791 None:intergenic
CGTTTAGAAAATATAATTCG+AGG 0.485783 7_2:-87241532 Msa1086220:CDS
AATTGTGATTCTGGGATCTT+GGG 0.486220 7_2:-87240351 Msa1086220:CDS
AGATGTGAATTAGGAGGGAT+TGG 0.486416 7_2:-87241760 Msa1086220:CDS
ATTGGAATGAAATTTGGAAT+GGG 0.491267 7_2:-87241643 Msa1086220:CDS
TGTTCATATCTCTCATCAAA+AGG 0.491842 7_2:+87239869 None:intergenic
CAACAAAGATGTGAATTAGG+AGG 0.492034 7_2:-87241766 Msa1086220:CDS
ATTTCCTGAATCTTTATGTA+CGG 0.495836 7_2:-87241809 Msa1086220:CDS
TTGGCAATTCACGCAAGGAT+TGG 0.498707 7_2:-87241211 Msa1086220:CDS
GATTGGAATGAAATTTGGAA+TGG 0.498930 7_2:-87241644 Msa1086220:CDS
CAAGTTGATGATAAAATACA+TGG 0.502523 7_2:-87239668 Msa1086220:CDS
GTGCATTGTTGGAACTGGAT+TGG 0.504759 7_2:-87240843 Msa1086220:CDS
TGGAGGTTTGGGCGCTCGAG+GGG 0.505858 7_2:-87239562 Msa1086220:CDS
CTCCTGAATCTAAGGCCACT+TGG 0.506387 7_2:+87240816 None:intergenic
TGTACTCATTAGTGAACGTC+TGG 0.512500 7_2:-87240513 Msa1086220:CDS
AACAAAGATGTGAATTAGGA+GGG 0.512939 7_2:-87241765 Msa1086220:CDS
AGAACTACGATCTTTGGCTC+TGG 0.513829 7_2:-87239393 Msa1086220:CDS
GTTCGCCCCGTCAATCCTCC+AGG 0.515843 7_2:+87241331 None:intergenic
GATATGCCTTATTTGCAAGA+TGG 0.518600 7_2:-87240013 Msa1086220:CDS
TATTAGTAGCTTATATGCCA+TGG 0.519177 7_2:-87240559 Msa1086220:CDS
GTAAACAAACATCGAATCCA+TGG 0.519391 7_2:-87239802 Msa1086220:CDS
CAGAAACGTGAAATTAAAGT+AGG 0.520965 7_2:-87240097 Msa1086220:CDS
ATATAGTATTCATCTCTACT+TGG 0.523407 7_2:+87241112 None:intergenic
CGACAATTTGCTTGTGTAGG+CGG 0.527978 7_2:-87241841 Msa1086220:CDS
AAAGTAGGTGATAAAGTGGC+CGG 0.529519 7_2:-87240082 Msa1086220:CDS
GCATTTACCTTTATGAACCT+GGG 0.530323 7_2:+87240652 None:intergenic
AAAGATTCTGGAGCATCCAC+AGG 0.531781 7_2:+87239431 None:intergenic
GCAGATGGTGCTGCTACTGT+TGG 0.531919 7_2:-87240608 Msa1086220:CDS
GATAAAGTGGCCGGGAGACA+TGG 0.532845 7_2:-87240073 Msa1086220:CDS
AGAAAGACTTCCAGATTCAA+AGG 0.533242 7_2:-87239346 Msa1086220:CDS
GGGTTGAAGACCATATCAAC+GGG 0.535156 7_2:+87239986 None:intergenic
CACAACAACCCCTTAAAGGA+AGG 0.535519 7_2:-87239616 Msa1086220:CDS
AATTCTTGACGGTATCGAGC+TGG 0.536702 7_2:+87241031 None:intergenic
CAATAGTTAGAAATTCTTGA+CGG 0.539101 7_2:+87241020 None:intergenic
TAATCTATCTTCCGGAGCAT+AGG 0.540322 7_2:+87240271 None:intergenic
TCTATCTTCCGGAGCATAGG+AGG 0.540370 7_2:+87240274 None:intergenic
TACTCGGGTTCAAATATCCA+TGG 0.546454 7_2:+87239785 None:intergenic
TCCTGCGTGTTCGGCTATAG+CGG 0.549505 7_2:+87240790 None:intergenic
AGAATTTCTAACTATTGCAT+GGG 0.549733 7_2:-87241014 Msa1086220:CDS
CAGATATTGGAATGTTCACT+CGG 0.551609 7_2:-87239932 Msa1086220:CDS
TAGTGATTCTTTCAGGACCA+TGG 0.551937 7_2:+87240426 None:intergenic
GAATACTATATGGTAGCGAC+GGG 0.553560 7_2:-87241100 Msa1086220:CDS
GATGGTGCTGCTACTGTTGG+CGG 0.553778 7_2:-87240605 Msa1086220:CDS
TATCGACAATTTGCTTGTGT+AGG 0.554239 7_2:-87241844 Msa1086220:CDS
CATTGACCCAAATAGTTCAT+GGG 0.556065 7_2:-87241375 Msa1086220:CDS
GATTATTACGAGCTATACTT+GGG 0.558504 7_2:-87240253 Msa1086220:CDS
CTCGGAACTACGATTATTGG+AGG 0.559077 7_2:-87239467 Msa1086220:CDS
ATCTTGTAATAGATCTGCTA+CGG 0.559735 7_2:+87241576 None:intergenic
AGACTTCCAGATTCAAAGGA+AGG 0.563377 7_2:-87239342 Msa1086220:CDS
GTCACTAAATTCTGAGGAGT+AGG 0.563396 7_2:+87241475 None:intergenic
GGAAGTCTTTCTCAGATACA+AGG 0.565963 7_2:+87239357 None:intergenic
AACAAGTGCATAATGTCCAC+TGG 0.566338 7_2:+87239640 None:intergenic
TGTTTCGCCCTTCCTTTAAG+GGG 0.567625 7_2:+87239608 None:intergenic
AATGTTCACTCGGATTAGCT+GGG 0.569063 7_2:-87239922 Msa1086220:CDS
GAAAGAATCCTCCTATGCTC+CGG 0.570879 7_2:-87240282 Msa1086220:CDS
TGAATACTATATGGTAGCGA+CGG 0.571395 7_2:-87241101 Msa1086220:CDS
TCCTACATTGATTCCTTCCG+AGG 0.572209 7_2:+87241246 None:intergenic
CAAATGCGTCCATAGTGACT+AGG 0.573493 7_2:+87241280 None:intergenic
CTTAAAGGAAGGGCGAAACA+AGG 0.579473 7_2:-87239605 Msa1086220:CDS
AATTAAAGTAGGTGATAAAG+TGG 0.581077 7_2:-87240086 Msa1086220:CDS
ATATTTGAACCCGAGTATCC+GGG 0.581389 7_2:-87239779 Msa1086220:CDS
CAGACTCATGTGACAAGCCA+TGG 0.581560 7_2:-87240443 Msa1086220:CDS
CTGTCCTACATTCATTCGTG+AGG 0.583153 7_2:+87239952 None:intergenic
AGTAAATGGGCTTCTAGATG+TGG 0.584284 7_2:+87240395 None:intergenic
CCCGAGTATCCGGGAAAGAG+CGG 0.584519 7_2:-87239770 Msa1086220:CDS
TGTCCAATTGACACCTCGGA+AGG 0.584582 7_2:-87241259 Msa1086220:CDS
GTCTTTCCTCAATGAAAAGG+AGG 0.586724 7_2:-87241908 Msa1086220:CDS
ATGCTCGATAAAAGGAATCA+GGG 0.587469 7_2:+87240937 None:intergenic
TGGGATCTTGGGTAGAAACA+GGG 0.592045 7_2:-87240340 Msa1086220:CDS
TCAGAATTGTAACCTTCCCA+TGG 0.596416 7_2:+87240542 None:intergenic
ATTAGTAGCTTATATGCCAT+GGG 0.596673 7_2:-87240558 Msa1086220:CDS
AAGTAGGTGATAAAGTGGCC+GGG 0.597954 7_2:-87240081 Msa1086220:CDS
GGGCGAAACAAGGAGGACAA+CGG 0.598993 7_2:-87239595 Msa1086220:CDS
CACGCAAGGATTGGTCCTTG+GGG 0.608804 7_2:-87241202 Msa1086220:CDS
GTAGCTTATATGCCATGGGA+AGG 0.611195 7_2:-87240554 Msa1086220:CDS
TGTCCTACATTCATTCGTGA+GGG 0.611498 7_2:+87239953 None:intergenic
GATCCTTGGCAATTCACGCA+AGG 0.614349 7_2:-87241216 Msa1086220:CDS
AAAATACATGGACGTTCCAG+TGG 0.614997 7_2:-87239656 Msa1086220:CDS
AACTGGATTGGAACGCCAAG+TGG 0.615266 7_2:-87240831 Msa1086220:CDS
GTTGAAGTCACTAAATTCTG+AGG 0.617323 7_2:+87241469 None:intergenic
TGATGAGAGATATGAACAGG+AGG 0.620223 7_2:-87239864 Msa1086220:CDS
AATCCTTGCGTGAATTGCCA+AGG 0.621341 7_2:+87241213 None:intergenic
CATTTGTCCAATTGACACCT+CGG 0.622149 7_2:-87241263 Msa1086220:CDS
GTACCCTCACGAATGAATGT+AGG 0.622385 7_2:-87239956 Msa1086220:CDS
TGGGTTGAAGACCATATCAA+CGG 0.622611 7_2:+87239985 None:intergenic
TGCGTCCATAGTGACTAGGA+TGG 0.626242 7_2:+87241284 None:intergenic
AAACAAGGAGGACAACGGGT+AGG 0.626804 7_2:-87239590 Msa1086220:CDS
ACGCAAGGATTGGTCCTTGG+GGG 0.629421 7_2:-87241201 Msa1086220:CDS
TTGAGTTATTTGGGTCCTGG+AGG 0.630319 7_2:-87241346 Msa1086220:CDS
TGGGTCCTGGAGGATTGACG+GGG 0.631061 7_2:-87241336 Msa1086220:CDS
GGGATCTTGGGTAGAAACAG+GGG 0.635116 7_2:-87240339 Msa1086220:CDS
ACAACAACCCCTTAAAGGAA+GGG 0.636584 7_2:-87239615 Msa1086220:CDS
ACCTCGGAAGGAATCAATGT+AGG 0.642821 7_2:-87241247 Msa1086220:CDS
AGGAACAATACCTAAACCTG+TGG 0.656849 7_2:-87239447 Msa1086220:CDS
AAAGCTCGTCAAGAAGTACT+CGG 0.659322 7_2:-87239485 Msa1086220:CDS
ACAACGGGTAGGCGAAATGG+AGG 0.659407 7_2:-87239579 Msa1086220:CDS
TATGGTCTTCAACCCATTAG+GGG 0.670295 7_2:-87239978 Msa1086220:CDS
CCCGCTATAGCCGAACACGC+AGG 0.684746 7_2:-87240791 Msa1086220:CDS
GAATATTTGATGGAAGAACA+GGG 0.689025 7_2:-87239748 Msa1086220:CDS
GCGAGATATATTGACAGCTG+CGG 0.702124 7_2:-87241674 Msa1086220:CDS
GCAGCTGTCAATATATCTCG+CGG 0.702925 7_2:+87241676 None:intergenic
AAAGGAAGGGCGAAACAAGG+AGG 0.708508 7_2:-87239602 Msa1086220:CDS
ACTGAATCGAGGTATTCAGG+AGG 0.734798 7_2:-87241065 Msa1086220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATTAATTTCAAGATATA+AGG + chr7_2:87241609-87241628 None:intergenic 15.0%
!! AAAAGGAGGAAAAAAAAATA+GGG - chr7_2:87239404-87239423 Msa1086220:CDS 20.0%
!! TAACAAAAATGTATTGTTCT+CGG + chr7_2:87239602-87239621 None:intergenic 20.0%
!!! AAGATCATTTTATTTGGAAA+TGG - chr7_2:87240555-87240574 Msa1086220:CDS 20.0%
!!! AGATCATTTTATTTGGAAAT+GGG - chr7_2:87240556-87240575 Msa1086220:CDS 20.0%
!!! ATTTTATTAGTGATTCTTTC+AGG + chr7_2:87240882-87240901 None:intergenic 20.0%
!!! TTCCATTTTTGTCTAAATTT+CGG + chr7_2:87240929-87240948 None:intergenic 20.0%
!! ATATATATATGAATCGTTTC+TGG + chr7_2:87241177-87241196 None:intergenic 20.0%
! AGGAAAGACATAAAAATTTC+GGG + chr7_2:87239379-87239398 None:intergenic 25.0%
! GAGGAAAGACATAAAAATTT+CGG + chr7_2:87239380-87239399 None:intergenic 25.0%
! GAAAAGGAGGAAAAAAAAAT+AGG - chr7_2:87239403-87239422 Msa1086220:CDS 25.0%
! CATAAAGATTCAGGAAATAT+GGG + chr7_2:87239487-87239506 None:intergenic 25.0%
! ACATAAAGATTCAGGAAATA+TGG + chr7_2:87239488-87239507 None:intergenic 25.0%
! ATTTCCTGAATCTTTATGTA+CGG - chr7_2:87239489-87239508 Msa1086220:CDS 25.0%
! TTTCAACAAAGATGTGAATT+AGG - chr7_2:87239529-87239548 Msa1086220:CDS 25.0%
! AACAAAAATGTATTGTTCTC+GGG + chr7_2:87239601-87239620 None:intergenic 25.0%
! CATTTGATTGGAATGAAATT+TGG - chr7_2:87239649-87239668 Msa1086220:CDS 25.0%
!! ATTGGAATGAAATTTGGAAT+GGG - chr7_2:87239655-87239674 Msa1086220:CDS 25.0%
! GATCTATTACAAGATCAATT+TGG - chr7_2:87239730-87239749 Msa1086220:CDS 25.0%
! ATTACAAGATCAATTTGGAT+TGG - chr7_2:87239735-87239754 Msa1086220:CDS 25.0%
! CGTTTAGAAAATATAATTCG+AGG - chr7_2:87239766-87239785 Msa1086220:CDS 25.0%
!! GATCTAAAACTTGAGATAAT+GGG + chr7_2:87239894-87239913 None:intergenic 25.0%
! CTCTCAGAAATTTCAAAAAA+TGG + chr7_2:87240135-87240154 None:intergenic 25.0%
! ATATAGTATTCATCTCTACT+TGG + chr7_2:87240189-87240208 None:intergenic 25.0%
! AAGTAGAGATGAATACTATA+TGG - chr7_2:87240188-87240207 Msa1086220:intron 25.0%
! CAATAGTTAGAAATTCTTGA+CGG + chr7_2:87240281-87240300 None:intergenic 25.0%
! AAGAATTTCTAACTATTGCA+TGG - chr7_2:87240283-87240302 Msa1086220:CDS 25.0%
! AGAATTTCTAACTATTGCAT+GGG - chr7_2:87240284-87240303 Msa1086220:CDS 25.0%
! CCAATAGAAAAATATTGGAA+GGG + chr7_2:87240336-87240355 None:intergenic 25.0%
! TCCAATAGAAAAATATTGGA+AGG + chr7_2:87240337-87240356 None:intergenic 25.0%
! AAGCTCCAATAGAAAAATAT+TGG + chr7_2:87240341-87240360 None:intergenic 25.0%
!! ACTGACAAGATCATTTTATT+TGG - chr7_2:87240549-87240568 Msa1086220:CDS 25.0%
! GAACGTTGATATCTAATTAA+TGG + chr7_2:87240597-87240616 None:intergenic 25.0%
! TAAAGGTAAATGCGTAAAAA+AGG - chr7_2:87240656-87240675 Msa1086220:CDS 25.0%
! AAAGGTAAATGCGTAAAAAA+GGG - chr7_2:87240657-87240676 Msa1086220:CDS 25.0%
! AAAAATGGAATTGTGATTCT+GGG - chr7_2:87240939-87240958 Msa1086220:CDS 25.0%
!!! ATAGCTAGAAACCTTTTTTT+TGG + chr7_2:87241151-87241170 None:intergenic 25.0%
! AATTAAAGTAGGTGATAAAG+TGG - chr7_2:87241212-87241231 Msa1086220:CDS 25.0%
!! TAAGGTTTTCCTATTATAAC+AGG + chr7_2:87241591-87241610 None:intergenic 25.0%
!!! CAAGTTGATGATAAAATACA+TGG - chr7_2:87241630-87241649 Msa1086220:CDS 25.0%
GGAAAGACATAAAAATTTCG+GGG + chr7_2:87239378-87239397 None:intergenic 30.0%
TATGTCTTTCCTCAATGAAA+AGG - chr7_2:87239387-87239406 Msa1086220:CDS 30.0%
!!! TTTTTTCCTCCTTTTCATTG+AGG + chr7_2:87239399-87239418 None:intergenic 30.0%
!! GTCAAAAGAAAATGCCATTT+TGG - chr7_2:87239426-87239445 Msa1086220:CDS 30.0%
TTGTCGATAAAACTCCAAAA+TGG + chr7_2:87239443-87239462 None:intergenic 30.0%
AATTCCGTACATAAAGATTC+AGG + chr7_2:87239496-87239515 None:intergenic 30.0%
AACAAAGATGTGAATTAGGA+GGG - chr7_2:87239533-87239552 Msa1086220:CDS 30.0%
GTATATCAATGTTCAGTCTT+CGG + chr7_2:87239579-87239598 None:intergenic 30.0%
GATTGGAATGAAATTTGGAA+TGG - chr7_2:87239654-87239673 Msa1086220:CDS 30.0%
ATCTTGTAATAGATCTGCTA+CGG + chr7_2:87239725-87239744 None:intergenic 30.0%
ATAATTCGAGGAACTATATC+TGG - chr7_2:87239778-87239797 Msa1086220:CDS 30.0%
GATTCATAAGTGGTTGTTAA+TGG + chr7_2:87239856-87239875 None:intergenic 30.0%
!!! ACCACTTATGAATCGTTTTT+TGG - chr7_2:87239862-87239881 Msa1086220:CDS 30.0%
TCCAAAAAACGATTCATAAG+TGG + chr7_2:87239866-87239885 None:intergenic 30.0%
! CGATCTAAAACTTGAGATAA+TGG + chr7_2:87239895-87239914 None:intergenic 30.0%
! TTTTCTCCCATGAACTATTT+GGG + chr7_2:87239932-87239951 None:intergenic 30.0%
! ATTTTCTCCCATGAACTATT+TGG + chr7_2:87239933-87239952 None:intergenic 30.0%
TGGGAGAAAATTGAGTTATT+TGG - chr7_2:87239942-87239961 Msa1086220:CDS 30.0%
GGGAGAAAATTGAGTTATTT+GGG - chr7_2:87239943-87239962 Msa1086220:CDS 30.0%
!!! AATTTTTTAGCACTGAATCG+AGG - chr7_2:87240222-87240241 Msa1086220:intron 30.0%
! CCCTTCCAATATTTTTCTAT+TGG - chr7_2:87240333-87240352 Msa1086220:CDS 30.0%
!! ATGCATGCAAGTATTTTTGT+TGG + chr7_2:87240619-87240638 None:intergenic 30.0%
TATTAGTAGCTTATATGCCA+TGG - chr7_2:87240739-87240758 Msa1086220:CDS 30.0%
ATTAGTAGCTTATATGCCAT+GGG - chr7_2:87240740-87240759 Msa1086220:CDS 30.0%
GTCTAAATTTCGGAGTAAAT+GGG + chr7_2:87240919-87240938 None:intergenic 30.0%
TGTCTAAATTTCGGAGTAAA+TGG + chr7_2:87240920-87240939 None:intergenic 30.0%
CTCCGAAATTTAGACAAAAA+TGG - chr7_2:87240924-87240943 Msa1086220:CDS 30.0%
CAAAAATGGAATTGTGATTC+TGG - chr7_2:87240938-87240957 Msa1086220:CDS 30.0%
AGATTATTACGAGCTATACT+TGG - chr7_2:87241044-87241063 Msa1086220:CDS 30.0%
GATTATTACGAGCTATACTT+GGG - chr7_2:87241045-87241064 Msa1086220:CDS 30.0%
! TTTTAGACAAGTTTCCTTTG+AGG + chr7_2:87241084-87241103 None:intergenic 30.0%
! ACTTGTCTAAAACTACCTAT+AGG - chr7_2:87241092-87241111 Msa1086220:CDS 30.0%
CAGAAACGTGAAATTAAAGT+AGG - chr7_2:87241201-87241220 Msa1086220:CDS 30.0%
! TTCAAAGATTTTGTCTAGAC+AGG - chr7_2:87241263-87241282 Msa1086220:CDS 30.0%
AATGAATGTAGGACAGATAT+TGG - chr7_2:87241353-87241372 Msa1086220:CDS 30.0%
TGTTCATATCTCTCATCAAA+AGG + chr7_2:87241432-87241451 None:intergenic 30.0%
! TTTTGATGAGAGATATGAAC+AGG - chr7_2:87241431-87241450 Msa1086220:CDS 30.0%
! TTCAGAAAACACAAGTTTTC+TGG + chr7_2:87241463-87241482 None:intergenic 30.0%
GAATATTTGATGGAAGAACA+GGG - chr7_2:87241550-87241569 Msa1086220:CDS 30.0%
ATTATAACAGGCTGTTCAAA+AGG + chr7_2:87241579-87241598 None:intergenic 30.0%
TTTGAACAGCCTGTTATAAT+AGG - chr7_2:87241579-87241598 Msa1086220:CDS 30.0%
! TATCGACAATTTGCTTGTGT+AGG - chr7_2:87239454-87239473 Msa1086220:CDS 35.0%
CAACAAAGATGTGAATTAGG+AGG - chr7_2:87239532-87239551 Msa1086220:CDS 35.0%
TCAGTCTTCGGTTCATATTT+CGG + chr7_2:87239567-87239586 None:intergenic 35.0%
GTTGAAGTCACTAAATTCTG+AGG + chr7_2:87239832-87239851 None:intergenic 35.0%
AACTATTTGGGTCAATGGAT+TGG + chr7_2:87239920-87239939 None:intergenic 35.0%
CATTGACCCAAATAGTTCAT+GGG - chr7_2:87239923-87239942 Msa1086220:CDS 35.0%
AAATTGAGTTATTTGGGTCC+TGG - chr7_2:87239949-87239968 Msa1086220:CDS 35.0%
GGAATCAATGTAGGACTTAT+TGG - chr7_2:87240060-87240079 Msa1086220:CDS 35.0%
! TGAATACTATATGGTAGCGA+CGG - chr7_2:87240197-87240216 Msa1086220:intron 35.0%
ATGCTCGATAAAAGGAATCA+GGG + chr7_2:87240364-87240383 None:intergenic 35.0%
TATGCTCGATAAAAGGAATC+AGG + chr7_2:87240365-87240384 None:intergenic 35.0%
GCATCATTATGCTCGATAAA+AGG + chr7_2:87240372-87240391 None:intergenic 35.0%
! AGTTCCAACAATGCACTTTT+CGG + chr7_2:87240451-87240470 None:intergenic 35.0%
CAAAAATCCCAGGTTCATAA+AGG - chr7_2:87240639-87240658 Msa1086220:CDS 35.0%
GCATTTACCTTTATGAACCT+GGG + chr7_2:87240649-87240668 None:intergenic 35.0%
!! AAGGGACAAATTTTAGCAGA+TGG - chr7_2:87240675-87240694 Msa1086220:CDS 35.0%
!! AATTGTGATTCTGGGATCTT+GGG - chr7_2:87240947-87240966 Msa1086220:CDS 35.0%
!! AGAAACAGGGGATATTTTAG+TGG - chr7_2:87240971-87240990 Msa1086220:CDS 35.0%
!!! GAAACAGGGGATATTTTAGT+GGG - chr7_2:87240972-87240991 Msa1086220:CDS 35.0%
GCTCGTAATAATCTATCTTC+CGG + chr7_2:87241038-87241057 None:intergenic 35.0%
! TGTCTAAAACTACCTATAGG+TGG - chr7_2:87241095-87241114 Msa1086220:CDS 35.0%
TAAAACTACCTATAGGTGGT+AGG - chr7_2:87241099-87241118 Msa1086220:CDS 35.0%
AAAACTACCTATAGGTGGTA+GGG - chr7_2:87241100-87241119 Msa1086220:CDS 35.0%
TCCATCTCACATCAATAACT+CGG + chr7_2:87241127-87241146 None:intergenic 35.0%
GTGAGATGGATCCAAAAAAA+AGG - chr7_2:87241137-87241156 Msa1086220:CDS 35.0%
!! GATATGCCTTATTTGCAAGA+TGG - chr7_2:87241285-87241304 Msa1086220:CDS 35.0%
ATATGGTCTTCAACCCATTA+GGG - chr7_2:87241319-87241338 Msa1086220:CDS 35.0%
CAGATATTGGAATGTTCACT+CGG - chr7_2:87241366-87241385 Msa1086220:CDS 35.0%
TGGATTCGATGTTTGTTTAC+TGG + chr7_2:87241496-87241515 None:intergenic 35.0%
GTAAACAAACATCGAATCCA+TGG - chr7_2:87241496-87241515 Msa1086220:CDS 35.0%
GGAATATTTGATGGAAGAAC+AGG - chr7_2:87241549-87241568 Msa1086220:CDS 35.0%
AGAAAGACTTCCAGATTCAA+AGG - chr7_2:87241952-87241971 Msa1086220:CDS 35.0%
AAACTTCCTTCCTTTGAATC+TGG + chr7_2:87241965-87241984 None:intergenic 35.0%
GTCTTTCCTCAATGAAAAGG+AGG - chr7_2:87239390-87239409 Msa1086220:CDS 40.0%
AGATGTGAATTAGGAGGGAT+TGG - chr7_2:87239538-87239557 Msa1086220:CDS 40.0%
! GTCACTAAATTCTGAGGAGT+AGG + chr7_2:87239826-87239845 None:intergenic 40.0%
CCATGAACTATTTGGGTCAA+TGG + chr7_2:87239925-87239944 None:intergenic 40.0%
CCATTGACCCAAATAGTTCA+TGG - chr7_2:87239922-87239941 Msa1086220:CDS 40.0%
!!! GAACTGCTAGTTTTCGGATA+CGG - chr7_2:87239986-87240005 Msa1086220:CDS 40.0%
!!! AACTGCTAGTTTTCGGATAC+GGG - chr7_2:87239987-87240006 Msa1086220:CDS 40.0%
GATATCCATCCTAGTCACTA+TGG - chr7_2:87240009-87240028 Msa1086220:CDS 40.0%
CATTTGTCCAATTGACACCT+CGG - chr7_2:87240035-87240054 Msa1086220:CDS 40.0%
TGTAGGACTTATTGGATCCT+TGG - chr7_2:87240068-87240087 Msa1086220:CDS 40.0%
! GAATACTATATGGTAGCGAC+GGG - chr7_2:87240198-87240217 Msa1086220:intron 40.0%
TCTAACTATTGCATGGGAAC+AGG - chr7_2:87240290-87240309 Msa1086220:CDS 40.0%
! GAAAAGTGCATTGTTGGAAC+TGG - chr7_2:87240450-87240469 Msa1086220:CDS 40.0%
TTGCATGCATCAAAAATCCC+AGG - chr7_2:87240629-87240648 Msa1086220:CDS 40.0%
CGCATTTACCTTTATGAACC+TGG + chr7_2:87240650-87240669 None:intergenic 40.0%
TCAGAATTGTAACCTTCCCA+TGG + chr7_2:87240759-87240778 None:intergenic 40.0%
TGTACTCATTAGTGAACGTC+TGG - chr7_2:87240785-87240804 Msa1086220:CDS 40.0%
TAGTGATTCTTTCAGGACCA+TGG + chr7_2:87240875-87240894 None:intergenic 40.0%
! AGTAAATGGGCTTCTAGATG+TGG + chr7_2:87240906-87240925 None:intergenic 40.0%
!! GAATTGTGATTCTGGGATCT+TGG - chr7_2:87240946-87240965 Msa1086220:CDS 40.0%
GGGTAAATTAACGCCTCAAA+TGG - chr7_2:87240992-87241011 Msa1086220:CDS 40.0%
TAATCTATCTTCCGGAGCAT+AGG + chr7_2:87241030-87241049 None:intergenic 40.0%
AAACTACCTATAGGTGGTAG+GGG - chr7_2:87241101-87241120 Msa1086220:CDS 40.0%
AAAGTAGGTGATAAAGTGGC+CGG - chr7_2:87241216-87241235 Msa1086220:CDS 40.0%
! ACCTTTATTTCCATGTCTCC+CGG + chr7_2:87241238-87241257 None:intergenic 40.0%
GGTCTTCCATCTTGCAAATA+AGG + chr7_2:87241294-87241313 None:intergenic 40.0%
! TGGGTTGAAGACCATATCAA+CGG + chr7_2:87241316-87241335 None:intergenic 40.0%
GATATGGTCTTCAACCCATT+AGG - chr7_2:87241318-87241337 Msa1086220:CDS 40.0%
TATGGTCTTCAACCCATTAG+GGG - chr7_2:87241320-87241339 Msa1086220:CDS 40.0%
TGTCCTACATTCATTCGTGA+GGG + chr7_2:87241348-87241367 None:intergenic 40.0%
!! AATGTTCACTCGGATTAGCT+GGG - chr7_2:87241376-87241395 Msa1086220:CDS 40.0%
TGATGAGAGATATGAACAGG+AGG - chr7_2:87241434-87241453 Msa1086220:CDS 40.0%
TACTCGGGTTCAAATATCCA+TGG + chr7_2:87241516-87241535 None:intergenic 40.0%
GATATTTGAACCCGAGTATC+CGG - chr7_2:87241518-87241537 Msa1086220:CDS 40.0%
ATATTTGAACCCGAGTATCC+GGG - chr7_2:87241519-87241538 Msa1086220:CDS 40.0%
TCAAATATTCCGCTCTTTCC+CGG + chr7_2:87241540-87241559 None:intergenic 40.0%
GGAAAGAGCGGAATATTTGA+TGG - chr7_2:87241540-87241559 Msa1086220:CDS 40.0%
AAAATACATGGACGTTCCAG+TGG - chr7_2:87241642-87241661 Msa1086220:CDS 40.0%
AACAAGTGCATAATGTCCAC+TGG + chr7_2:87241661-87241680 None:intergenic 40.0%
GTTACACAACAACCCCTTAA+AGG - chr7_2:87241678-87241697 Msa1086220:CDS 40.0%
ACAACAACCCCTTAAAGGAA+GGG - chr7_2:87241683-87241702 Msa1086220:CDS 40.0%
TTGTTTCGCCCTTCCTTTAA+GGG + chr7_2:87241694-87241713 None:intergenic 40.0%
!! AAAGCTCGTCAAGAAGTACT+CGG - chr7_2:87241813-87241832 Msa1086220:CDS 40.0%
GTACTCGGAACTACGATTAT+TGG - chr7_2:87241828-87241847 Msa1086220:CDS 40.0%
AGGAACAATACCTAAACCTG+TGG - chr7_2:87241851-87241870 Msa1086220:CDS 40.0%
ACGAGCAATCGAAAAGATTC+TGG + chr7_2:87241882-87241901 None:intergenic 40.0%
GGAAGTCTTTCTCAGATACA+AGG + chr7_2:87241944-87241963 None:intergenic 40.0%
AGACTTCCAGATTCAAAGGA+AGG - chr7_2:87241956-87241975 Msa1086220:CDS 40.0%
! CGACAATTTGCTTGTGTAGG+CGG - chr7_2:87239457-87239476 Msa1086220:CDS 45.0%
GCAGCTGTCAATATATCTCG+CGG + chr7_2:87239625-87239644 None:intergenic 45.0%
GCGAGATATATTGACAGCTG+CGG - chr7_2:87239624-87239643 Msa1086220:CDS 45.0%
ACAGCTGCGGATCATTTGAT+TGG - chr7_2:87239637-87239656 Msa1086220:CDS 45.0%
TTGAGTTATTTGGGTCCTGG+AGG - chr7_2:87239952-87239971 Msa1086220:CDS 45.0%
CAAATGCGTCCATAGTGACT+AGG + chr7_2:87240021-87240040 None:intergenic 45.0%
! ATTCCTTCCGAGGTGTCAAT+TGG + chr7_2:87240045-87240064 None:intergenic 45.0%
ACCTCGGAAGGAATCAATGT+AGG - chr7_2:87240051-87240070 Msa1086220:CDS 45.0%
!! TCCTACATTGATTCCTTCCG+AGG + chr7_2:87240055-87240074 None:intergenic 45.0%
AATCCTTGCGTGAATTGCCA+AGG + chr7_2:87240088-87240107 None:intergenic 45.0%
TTGGCAATTCACGCAAGGAT+TGG - chr7_2:87240087-87240106 Msa1086220:CDS 45.0%
! AGCACTGAATCGAGGTATTC+AGG - chr7_2:87240230-87240249 Msa1086220:intron 45.0%
! ACTGAATCGAGGTATTCAGG+AGG - chr7_2:87240233-87240252 Msa1086220:intron 45.0%
! AATTCTTGACGGTATCGAGC+TGG + chr7_2:87240270-87240289 None:intergenic 45.0%
GTCAAGCAGTTCCTCTTTCT+CGG - chr7_2:87240424-87240443 Msa1086220:CDS 45.0%
GTGCATTGTTGGAACTGGAT+TGG - chr7_2:87240455-87240474 Msa1086220:CDS 45.0%
AACGATCTTTCCTGCGTGTT+CGG + chr7_2:87240520-87240539 None:intergenic 45.0%
GTAGCTTATATGCCATGGGA+AGG - chr7_2:87240744-87240763 Msa1086220:CDS 45.0%
TGGGATCTTGGGTAGAAACA+GGG - chr7_2:87240958-87240977 Msa1086220:CDS 45.0%
GAGGATTCTTTCGCCATTTG+AGG + chr7_2:87241008-87241027 None:intergenic 45.0%
GAAAGAATCCTCCTATGCTC+CGG - chr7_2:87241016-87241035 Msa1086220:CDS 45.0%
ACGAGCTATACTTGGGATTC+AGG - chr7_2:87241052-87241071 Msa1086220:CDS 45.0%
!! GATTCAGGTATCGACCTCAA+AGG - chr7_2:87241067-87241086 Msa1086220:CDS 45.0%
GCCGAGTTATTGATGTGAGA+TGG - chr7_2:87241123-87241142 Msa1086220:CDS 45.0%
AAGTAGGTGATAAAGTGGCC+GGG - chr7_2:87241217-87241236 Msa1086220:CDS 45.0%
AGATGGAAGACCCGTTGATA+TGG - chr7_2:87241302-87241321 Msa1086220:CDS 45.0%
GGGTTGAAGACCATATCAAC+GGG + chr7_2:87241315-87241334 None:intergenic 45.0%
GTACCCTCACGAATGAATGT+AGG - chr7_2:87241342-87241361 Msa1086220:CDS 45.0%
CTGTCCTACATTCATTCGTG+AGG + chr7_2:87241349-87241368 None:intergenic 45.0%
!! GAATGTTCACTCGGATTAGC+TGG - chr7_2:87241375-87241394 Msa1086220:CDS 45.0%
CACAACAACCCCTTAAAGGA+AGG - chr7_2:87241682-87241701 Msa1086220:CDS 45.0%
TGTTTCGCCCTTCCTTTAAG+GGG + chr7_2:87241693-87241712 None:intergenic 45.0%
CTTGTTTCGCCCTTCCTTTA+AGG + chr7_2:87241695-87241714 None:intergenic 45.0%
CTTAAAGGAAGGGCGAAACA+AGG - chr7_2:87241693-87241712 Msa1086220:CDS 45.0%
CTCGGAACTACGATTATTGG+AGG - chr7_2:87241831-87241850 Msa1086220:CDS 45.0%
!! AAAGATTCTGGAGCATCCAC+AGG + chr7_2:87241870-87241889 None:intergenic 45.0%
CGTTCGAGAACTACGATCTT+TGG - chr7_2:87241899-87241918 Msa1086220:CDS 45.0%
! AGAACTACGATCTTTGGCTC+TGG - chr7_2:87241905-87241924 Msa1086220:CDS 45.0%
TTTGGGTCCTGGAGGATTGA+CGG - chr7_2:87239960-87239979 Msa1086220:CDS 50.0%
TGCGTCCATAGTGACTAGGA+TGG + chr7_2:87240017-87240036 None:intergenic 50.0%
TGTCCAATTGACACCTCGGA+AGG - chr7_2:87240039-87240058 Msa1086220:CDS 50.0%
GATCCTTGGCAATTCACGCA+AGG - chr7_2:87240082-87240101 Msa1086220:CDS 50.0%
!! TTCACGCAAGGATTGGTCCT+TGG - chr7_2:87240094-87240113 Msa1086220:CDS 50.0%
!! TCACGCAAGGATTGGTCCTT+GGG - chr7_2:87240095-87240114 Msa1086220:CDS 50.0%
GGACTTTCTATAGACCCCCA+AGG + chr7_2:87240114-87240133 None:intergenic 50.0%
! CACTTTTCGGACCGAGAAAG+AGG + chr7_2:87240438-87240457 None:intergenic 50.0%
! CGGTCCGAAAAGTGCATTGT+TGG - chr7_2:87240444-87240463 Msa1086220:CDS 50.0%
! AACTGGATTGGAACGCCAAG+TGG - chr7_2:87240467-87240486 Msa1086220:CDS 50.0%
! CTCCTGAATCTAAGGCCACT+TGG + chr7_2:87240485-87240504 None:intergenic 50.0%
AGCGGGAACTCCTGAATCTA+AGG + chr7_2:87240493-87240512 None:intergenic 50.0%
CAGACTCATGTGACAAGCCA+TGG - chr7_2:87240855-87240874 Msa1086220:CDS 50.0%
CTGGGATCTTGGGTAGAAAC+AGG - chr7_2:87240957-87240976 Msa1086220:CDS 50.0%
GGGATCTTGGGTAGAAACAG+GGG - chr7_2:87240959-87240978 Msa1086220:CDS 50.0%
TCTATCTTCCGGAGCATAGG+AGG + chr7_2:87241027-87241046 None:intergenic 50.0%
GCCGGGAGACATGGAAATAA+AGG - chr7_2:87241234-87241253 Msa1086220:CDS 50.0%
!! TTCGTGAGGGTACCCCTAAT+GGG + chr7_2:87241335-87241354 None:intergenic 50.0%
!! ATTCGTGAGGGTACCCCTAA+TGG + chr7_2:87241336-87241355 None:intergenic 50.0%
AAAGGAAGGGCGAAACAAGG+AGG - chr7_2:87241696-87241715 Msa1086220:CDS 50.0%
AAACAAGGAGGACAACGGGT+AGG - chr7_2:87241708-87241727 Msa1086220:CDS 50.0%
GGTAGGCGAAATGGAGGTTT+GGG - chr7_2:87241725-87241744 Msa1086220:CDS 50.0%
! TCTGGAGCATCCACAGGTTT+AGG + chr7_2:87241864-87241883 None:intergenic 50.0%
TTGGGTCCTGGAGGATTGAC+GGG - chr7_2:87239961-87239980 Msa1086220:CDS 55.0%
!!! CGGGGCGAACTGCTAGTTTT+CGG - chr7_2:87239980-87239999 Msa1086220:CDS 55.0%
!! CACGCAAGGATTGGTCCTTG+GGG - chr7_2:87240096-87240115 Msa1086220:CDS 55.0%
!! ACGCAAGGATTGGTCCTTGG+GGG - chr7_2:87240097-87240116 Msa1086220:CDS 55.0%
! CGCCAAGTGGCCTTAGATTC+AGG - chr7_2:87240480-87240499 Msa1086220:CDS 55.0%
TCCTGCGTGTTCGGCTATAG+CGG + chr7_2:87240511-87240530 None:intergenic 55.0%
!! GCAGATGGTGCTGCTACTGT+TGG - chr7_2:87240690-87240709 Msa1086220:CDS 55.0%
!! GATGGTGCTGCTACTGTTGG+CGG - chr7_2:87240693-87240712 Msa1086220:CDS 55.0%
TGTTGGCGGTGAACTCGCTT+TGG - chr7_2:87240707-87240726 Msa1086220:CDS 55.0%
GTTGGCGGTGAACTCGCTTT+GGG - chr7_2:87240708-87240727 Msa1086220:CDS 55.0%
GATAAAGTGGCCGGGAGACA+TGG - chr7_2:87241225-87241244 Msa1086220:CDS 55.0%
TCCGCTCTTTCCCGGATACT+CGG + chr7_2:87241532-87241551 None:intergenic 55.0%
GGGCGAAACAAGGAGGACAA+CGG - chr7_2:87241703-87241722 Msa1086220:CDS 55.0%
GGCGAAACAAGGAGGACAAC+GGG - chr7_2:87241704-87241723 Msa1086220:CDS 55.0%
AGGACAACGGGTAGGCGAAA+TGG - chr7_2:87241716-87241735 Msa1086220:CDS 55.0%
ACAACGGGTAGGCGAAATGG+AGG - chr7_2:87241719-87241738 Msa1086220:CDS 55.0%
GGGTAGGCGAAATGGAGGTT+TGG - chr7_2:87241724-87241743 Msa1086220:CDS 55.0%
TGGGTCCTGGAGGATTGACG+GGG - chr7_2:87239962-87239981 Msa1086220:CDS 60.0%
CCTGCGTGTTCGGCTATAGC+GGG + chr7_2:87240510-87240529 None:intergenic 60.0%
ACTCGGCCCCTACCACCTAT+AGG + chr7_2:87241110-87241129 None:intergenic 60.0%
CCGCTCTTTCCCGGATACTC+GGG + chr7_2:87241531-87241550 None:intergenic 60.0%
CCCGAGTATCCGGGAAAGAG+CGG - chr7_2:87241528-87241547 Msa1086220:CDS 60.0%
AATGGAGGTTTGGGCGCTCG+AGG - chr7_2:87241734-87241753 Msa1086220:CDS 60.0%
ATGGAGGTTTGGGCGCTCGA+GGG - chr7_2:87241735-87241754 Msa1086220:CDS 60.0%
GTTCGCCCCGTCAATCCTCC+AGG + chr7_2:87239970-87239989 None:intergenic 65.0%
CCCGCTATAGCCGAACACGC+AGG - chr7_2:87240507-87240526 Msa1086220:CDS 65.0%
TGGAGGTTTGGGCGCTCGAG+GGG - chr7_2:87241736-87241755 Msa1086220:CDS 65.0%
GTTTGGGCGCTCGAGGGGTT+CGG - chr7_2:87241741-87241760 Msa1086220:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87239334 87241986 87239334 ID=Msa1086220;Name=Msa1086220
chr7_2 mRNA 87239334 87241986 87239334 ID=Msa1086220-mRNA-1;Parent=Msa1086220;Name=Msa1086220-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|2|0|840
chr7_2 exon 87240247 87241986 87240247 ID=Msa1086220-mRNA-1:exon:23726;Parent=Msa1086220-mRNA-1
chr7_2 exon 87239334 87240116 87239334 ID=Msa1086220-mRNA-1:exon:23725;Parent=Msa1086220-mRNA-1
chr7_2 CDS 87240247 87241986 87240247 ID=Msa1086220-mRNA-1:cds;Parent=Msa1086220-mRNA-1
chr7_2 CDS 87239334 87240116 87239334 ID=Msa1086220-mRNA-1:cds;Parent=Msa1086220-mRNA-1
Gene Sequence

>Msa1086220

ATGGGTTCGAATTTAAGCGAAATTCTTGAGAACGTTTGCTACCCCGAAATTTTTATGTCTTTCCTCAATGAAAAGGAGGAAAAAAAAATAGGGTCAAAAGAAAATGCCATTTTGGAGTTTTATCGACAATTTGCTTGTGTAGGCGGAGATCCCATATTTCCTGAATCTTTATGTACGGAATTACAAAAAAAATTTTTTCAACAAAGATGTGAATTAGGAGGGATTGGTCGCCGAAATATGAACCGAAGACTGAACATTGATATACCCGAGAACAATACATTTTTGTTACCGCGAGATATATTGACAGCTGCGGATCATTTGATTGGAATGAAATTTGGAATGGGTACACTTGACGATATGAATCATTTGAAAAATAAACGTATTCGTTCCGTAGCAGATCTATTACAAGATCAATTTGGATTGGCTCTCGTTCGTTTAGAAAATATAATTCGAGGAACTATATCTGGAGCAATTAGATATAAATTGATACCTACTCCTCAGAATTTAGTGACTTCAACTCCATTAACAACCACTTATGAATCGTTTTTTGGATTACACCCATTATCTCAAGTTTTAGATCGAACCAATCCATTGACCCAAATAGTTCATGGGAGAAAATTGAGTTATTTGGGTCCTGGAGGATTGACGGGGCGAACTGCTAGTTTTCGGATACGGGATATCCATCCTAGTCACTATGGACGCATTTGTCCAATTGACACCTCGGAAGGAATCAATGTAGGACTTATTGGATCCTTGGCAATTCACGCAAGGATTGGTCCTTGGGGGTCTATAGAAAGTCCATTTTTTGAAATTTCTGAGAGATCAAAACGAATACGAATGCTTTATTTATCACCAAGTAGAGATGAATACTATATGGTAGCGACGGGAAATTTTTTAGCACTGAATCGAGGTATTCAGGAGGAGCAGATTGTTCCAGCTCGATACCGTCAAGAATTTCTAACTATTGCATGGGAACAGGTTCATCTTCGAAGTATTTTTCCCTTCCAATATTTTTCTATTGGAGCTTCCCTGATTCCTTTTATCGAGCATAATGATGCGAATCGAGCTTTAATGAGTTCTAATATGCAACGTCAAGCAGTTCCTCTTTCTCGGTCCGAAAAGTGCATTGTTGGAACTGGATTGGAACGCCAAGTGGCCTTAGATTCAGGAGTTCCCGCTATAGCCGAACACGCAGGAAAGATCGTTTATAACGATACTGACAAGATCATTTTATTTGGAAATGGGAATGCTCTAAGTATTCCATTAATTAGATATCAACGTTCCAACAAAAATACTTGCATGCATCAAAAATCCCAGGTTCATAAAGGTAAATGCGTAAAAAAGGGACAAATTTTAGCAGATGGTGCTGCTACTGTTGGCGGTGAACTCGCTTTGGGAAAAAACGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTCTGAAGATGCTGTACTCATTAGTGAACGTCTGGTCTATGAAGATATTTATACTTCTTTTCACATACGTAAATATGAAATTCAGACTCATGTGACAAGCCATGGTCCTGAAAGAATCACTAATAAAATTCCACATCTAGAAGCCCATTTACTCCGAAATTTAGACAAAAATGGAATTGTGATTCTGGGATCTTGGGTAGAAACAGGGGATATTTTAGTGGGTAAATTAACGCCTCAAATGGCGAAAGAATCCTCCTATGCTCCGGAAGATAGATTATTACGAGCTATACTTGGGATTCAGAAACGTGAAATTAAAGTAGGTGATAAAGTGGCCGGGAGACATGGAAATAAAGGTATCGTTTCAAAGATTTTGTCTAGACAGGATATGCCTTATTTGCAAGATGGAAGACCCGTTGATATGGTCTTCAACCCATTAGGGGTACCCTCACGAATGAATGTAGGACAGATATTGGAATGTTCACTCGGATTAGCTGGGAGTATGCTAAATAGACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAGGAGGCTTCCAGAAAACTTGTGTTTTCTGAATTATATGAAGCCAGTAAACAAACATCGAATCCATGGATATTTGAACCCGAGTATCCGGGAAAGAGCGGAATATTTGATGGAAGAACAGGGAATCCTTTTGAACAGCCTGTTATAATAGGAAAACCTTATATCTTGAAATTAATTCATCAAGTTGATGATAAAATACATGGACGTTCCAGTGGACATTATGCACTTGTTACACAACAACCCCTTAAAGGAAGGGCGAAACAAGGAGGACAACGGGTAGGCGAAATGGAGGTTTGGGCGCTCGAGGGGTTCGGTGTTGCTCATATTTTACAAGAGATGCTGACTTATAAATCTGATCATATTAAAGCTCGTCAAGAAGTACTCGGAACTACGATTATTGGAGGAACAATACCTAAACCTGTGGATGCTCCAGAATCTTTTCGATTGCTCGTTCGAGAACTACGATCTTTGGCTCTGGAACTGAATCATTTCCTTGTATCTGAGAAAGACTTCCAGATTCAAAGGAAGGAAGTTTAA

Protein sequence

>Msa1086220

MGSNLSEILENVCYPEIFMSFLNEKEEKKIGSKENAILEFYRQFACVGGDPIFPESLCTELQKKFFQQRCELGGIGRRNMNRRLNIDIPENNTFLLPRDILTAADHLIGMKFGMGTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENIIRGTISGAIRYKLIPTPQNLVTSTPLTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGPWGSIESPFFEISERSKRIRMLYLSPSRDEYYMVATGNFLALNRGIQEEQIVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVPAIAEHAGKIVYNDTDKIILFGNGNALSIPLIRYQRSNKNTCMHQKSQVHKGKCVKKGQILADGAATVGGELALGKNVLVAYMPWEGYNSEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSHGPERITNKIPHLEAHLLRNLDKNGIVILGSWVETGDILVGKLTPQMAKESSYAPEDRLLRAILGIQKREIKVGDKVAGRHGNKGIVSKILSRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQILECSLGLAGSMLNRHYRIAPFDERYEQEASRKLVFSELYEASKQTSNPWIFEPEYPGKSGIFDGRTGNPFEQPVIIGKPYILKLIHQVDDKIHGRSSGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVLGTTIIGGTIPKPVDAPESFRLLVRELRSLALELNHFLVSEKDFQIQRKEV*