Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347660 | XP_003598311.1 | 97.647 | 170 | 4 | 0 | 1 | 170 | 1 | 170 | 5.06e-119 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347660 | sp|Q9FKT1|LLG1_ARATH | 61.702 | 141 | 50 | 2 | 34 | 170 | 28 | 168 | 2.97e-59 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347660 | G7J0F7 | 97.647 | 170 | 4 | 0 | 1 | 170 | 1 | 170 | 2.42e-119 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0347660 | Msa0404070 | -0.800099 | 1.689349e-48 | -8.615850e-47 |
| Msa0347660 | Msa0442260 | 0.999006 | 1.092855e-285 | -8.615850e-47 |
| Msa0347660 | Msa0510120 | 0.805020 | 1.633182e-49 | -8.615850e-47 |
| Msa0347660 | Msa0575380 | 0.811073 | 8.402729e-51 | -8.615850e-47 |
| Msa0347660 | Msa0644830 | 0.800794 | 1.219236e-48 | -8.615850e-47 |
| Msa0347660 | Msa0684340 | 0.860833 | 1.568231e-63 | -8.615850e-47 |
| Msa0347660 | Msa0930210 | 0.809891 | 1.511979e-50 | -8.615850e-47 |
| Msa0347660 | Msa1089100 | 0.850093 | 2.121537e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347660 | MtrunA17_Chr3g0080031 | 97.647 | 170 | 4 | 0 | 1 | 170 | 1 | 170 | 4.66e-123 | 343 |
| Msa0347660 | MtrunA17_Chr6g0457591 | 50.610 | 164 | 77 | 2 | 9 | 170 | 3 | 164 | 8.89e-54 | 168 |
| Msa0347660 | MtrunA17_Chr6g0460101 | 54.887 | 133 | 59 | 1 | 2 | 134 | 25 | 156 | 1.16e-47 | 153 |
| Msa0347660 | MtrunA17_Chr6g0457601 | 58.678 | 121 | 49 | 1 | 14 | 134 | 17 | 136 | 5.50e-47 | 151 |
| Msa0347660 | MtrunA17_Chr6g0452621 | 58.140 | 129 | 49 | 3 | 9 | 134 | 3 | 129 | 1.44e-46 | 148 |
| Msa0347660 | MtrunA17_Chr6g0460111 | 47.692 | 65 | 34 | 0 | 106 | 170 | 1 | 65 | 1.56e-16 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347660 | AT5G56170.1 | 61.702 | 141 | 50 | 2 | 34 | 170 | 28 | 168 | 3.02e-60 | 184 |
| Msa0347660 | AT4G26466.1 | 51.064 | 141 | 64 | 3 | 34 | 170 | 25 | 164 | 2.94e-48 | 154 |
| Msa0347660 | AT2G20700.1 | 54.478 | 134 | 61 | 0 | 37 | 170 | 27 | 160 | 9.38e-48 | 153 |
| Msa0347660 | AT4G28280.3 | 56.061 | 132 | 55 | 1 | 37 | 168 | 10 | 138 | 2.02e-46 | 149 |
| Msa0347660 | AT4G28280.2 | 56.061 | 132 | 55 | 1 | 37 | 168 | 31 | 159 | 3.20e-46 | 149 |
| Msa0347660 | AT4G28280.1 | 65.934 | 91 | 31 | 0 | 53 | 143 | 21 | 111 | 3.24e-41 | 135 |
Find 42 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGCTACATTAATCTTTA+TGG | 0.084552 | 3_1:-8851816 | Msa0347660:CDS |
| TTTGATGCTGAGACACTTAC+TGG | 0.273135 | 3_1:-8853556 | Msa0347660:CDS |
| TCATTTATCACATCAGTATA+AGG | 0.287486 | 3_1:+8851867 | None:intergenic |
| CTATACGGTAACTATATATA+AGG | 0.291152 | 3_1:+8851484 | None:intergenic |
| TTCTTCACTTCTTCTCATCA+TGG | 0.345119 | 3_1:-8853756 | Msa0347660:CDS |
| AAATGCTCCACAACATTCCT+TGG | 0.377041 | 3_1:+8851905 | None:intergenic |
| TTATTCAACAAATCTATAAC+TGG | 0.408997 | 3_1:-8853856 | Msa0347660:five_prime_UTR |
| GAGTTACTAGGAAGAAAAGT+TGG | 0.427866 | 3_1:+8853710 | None:intergenic |
| CATTCCTTGGGAGGGTACTT+AGG | 0.429542 | 3_1:+8851918 | None:intergenic |
| ATACAACATAGGTAACTATA+CGG | 0.442461 | 3_1:+8851469 | None:intergenic |
| TTAATCATCCATTCCTCAAA+AGG | 0.448455 | 3_1:-8853947 | Msa0347660:five_prime_UTR |
| AACTTAATATTTGACAATTG+AGG | 0.454715 | 3_1:-8853922 | Msa0347660:five_prime_UTR |
| AATGCTCCACAACATTCCTT+GGG | 0.478717 | 3_1:+8851906 | None:intergenic |
| CATTTATCACATCAGTATAA+GGG | 0.483862 | 3_1:+8851868 | None:intergenic |
| TATACGGTAACTATATATAA+GGG | 0.487341 | 3_1:+8851485 | None:intergenic |
| CACTCGCTCGCAAAGAGGCC+AGG | 0.497941 | 3_1:+8851783 | None:intergenic |
| CACGTTCGTTATTGTTGATG+CGG | 0.503903 | 3_1:-8851540 | Msa0347660:three_prime_UTR |
| CACGACACTCGCTCGCAAAG+AGG | 0.542743 | 3_1:+8851778 | None:intergenic |
| ACGTTCGTTATTGTTGATGC+GGG | 0.543625 | 3_1:-8851539 | Msa0347660:three_prime_UTR |
| ACATACTCCATCTCTAGTGC+TGG | 0.553326 | 3_1:-8851682 | Msa0347660:CDS |
| TATTAAAATTAAGAAGATGC+AGG | 0.556222 | 3_1:+8851650 | None:intergenic |
| CGCTCGCAAAGAGGCCAGGA+GGG | 0.563412 | 3_1:+8851787 | None:intergenic |
| GAGCGAGTGTCGTGAAGGGA+AGG | 0.564311 | 3_1:-8851769 | Msa0347660:CDS |
| GATTTGATTTGCAGTATCAT+CGG | 0.571086 | 3_1:+8851707 | None:intergenic |
| ACAACACTCAAATACAACAT+AGG | 0.579101 | 3_1:+8851458 | None:intergenic |
| GTGAGCACCAGCACTAGAGA+TGG | 0.582002 | 3_1:+8851675 | None:intergenic |
| GTATCATCGGCGGACACTGA+TGG | 0.584167 | 3_1:+8851720 | None:intergenic |
| CTTTATGGAAGATACCCTCC+TGG | 0.585291 | 3_1:-8851801 | Msa0347660:CDS |
| TACCCTCCCAAGGAATGTTG+TGG | 0.591187 | 3_1:-8851912 | Msa0347660:CDS |
| ACATCATAGAACAAACATCA+TGG | 0.591577 | 3_1:-8853813 | Msa0347660:exon |
| TTTGCGAGCGAGTGTCGTGA+AGG | 0.593755 | 3_1:-8851774 | Msa0347660:CDS |
| CTCCACAACATTCCTTGGGA+GGG | 0.609435 | 3_1:+8851910 | None:intergenic |
| TTGCGAGCGAGTGTCGTGAA+GGG | 0.616291 | 3_1:-8851773 | Msa0347660:CDS |
| GCTCCACAACATTCCTTGGG+AGG | 0.623412 | 3_1:+8851909 | None:intergenic |
| GAGTGTCGTGAAGGGAAGGA+AGG | 0.628790 | 3_1:-8851765 | Msa0347660:CDS |
| TCGCTCGCAAAGAGGCCAGG+AGG | 0.631835 | 3_1:+8851786 | None:intergenic |
| AAGATTAATGTAGCTAAACA+TGG | 0.635506 | 3_1:+8851821 | None:intergenic |
| ATAATCACAAGCAAATGCAA+AGG | 0.641999 | 3_1:-8851942 | Msa0347660:CDS |
| AATGTAGCTAAACATGGTTG+AGG | 0.646232 | 3_1:+8851827 | None:intergenic |
| TCATCGGCGGACACTGATGG+TGG | 0.646590 | 3_1:+8851723 | None:intergenic |
| AGGACCTAAGTACCCTCCCA+AGG | 0.651427 | 3_1:-8851922 | Msa0347660:CDS |
| TTGATTTGCAGTATCATCGG+CGG | 0.696584 | 3_1:+8851710 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTCAAATTTTTATATC+TGG | - | chr3_1:8851798-8851817 | Msa0347660:CDS | 15.0% |
| !!! | AAGTTCAAATTTTTATATCT+GGG | - | chr3_1:8851799-8851818 | Msa0347660:CDS | 15.0% |
| !! | TAAATTGAAAACAACTTAAT+GGG | + | chr3_1:8852454-8852473 | None:intergenic | 15.0% |
| !! | ATAAATTGAAAACAACTTAA+TGG | + | chr3_1:8852455-8852474 | None:intergenic | 15.0% |
| !! | AAAAGAAAGAAAAAAGAATT+AGG | - | chr3_1:8852925-8852944 | Msa0347660:intron | 15.0% |
| !!! | AGTAATATTTTATGTAGAAT+AGG | - | chr3_1:8854019-8854038 | Msa0347660:five_prime_UTR | 15.0% |
| !!! | TTTTTCTTGTCTTTGAAAAA+TGG | + | chr3_1:8851407-8851426 | None:intergenic | 20.0% |
| !!! | AATATTAAGTTTTCCTTTTG+AGG | + | chr3_1:8851476-8851495 | None:intergenic | 20.0% |
| !! | AACTTAATATTTGACAATTG+AGG | - | chr3_1:8851485-8851504 | Msa0347660:three_prime_UTR | 20.0% |
| !! | TTATTCAACAAATCTATAAC+TGG | - | chr3_1:8851551-8851570 | Msa0347660:three_prime_UTR | 20.0% |
| !! | ATTATTATTGTTTGTAGTTG+TGG | - | chr3_1:8852077-8852096 | Msa0347660:intron | 20.0% |
| !! | TATTTCAGTTATCTATGTTT+AGG | - | chr3_1:8852997-8853016 | Msa0347660:intron | 20.0% |
| !! | TTATTGTATAATACATGTAC+TGG | - | chr3_1:8853326-8853345 | Msa0347660:intron | 20.0% |
| !! | TTTAGCTACATTAATCTTTA+TGG | - | chr3_1:8853591-8853610 | Msa0347660:intron | 20.0% |
| !! | TATTAAAATTAAGAAGATGC+AGG | + | chr3_1:8853760-8853779 | None:intergenic | 20.0% |
| !! | TATACGGTAACTATATATAA+GGG | + | chr3_1:8853925-8853944 | None:intergenic | 20.0% |
| !!! | TCTTTTTTCTTCTATGCTTT+TGG | - | chr3_1:8851917-8851936 | Msa0347660:CDS | 25.0% |
| !! | AGTTTTTCCAATATTTGAAG+TGG | - | chr3_1:8852192-8852211 | Msa0347660:intron | 25.0% |
| !!! | GTTTTTCCAATATTTGAAGT+GGG | - | chr3_1:8852193-8852212 | Msa0347660:intron | 25.0% |
| !! | GATTTGAAGTCACATAAAAA+TGG | + | chr3_1:8852264-8852283 | None:intergenic | 25.0% |
| ! | TTTATGTGACTTCAAATCTT+TGG | - | chr3_1:8852266-8852285 | Msa0347660:intron | 25.0% |
| ! | TAGGATCAAAATGATAACTT+AGG | - | chr3_1:8852348-8852367 | Msa0347660:intron | 25.0% |
| ! | AGGATCAAAATGATAACTTA+GGG | - | chr3_1:8852349-8852368 | Msa0347660:intron | 25.0% |
| ! | AGATTGTTTGAGAGAATATA+TGG | - | chr3_1:8852411-8852430 | Msa0347660:intron | 25.0% |
| ! | TATTTCCATAAGCTCTATAT+AGG | - | chr3_1:8852472-8852491 | Msa0347660:intron | 25.0% |
| ! | TTACACACATACATTAGTAT+TGG | - | chr3_1:8852626-8852645 | Msa0347660:intron | 25.0% |
| ! | TACACACATACATTAGTATT+GGG | - | chr3_1:8852627-8852646 | Msa0347660:intron | 25.0% |
| ! | TGATAATTCAACAAGATACA+TGG | + | chr3_1:8852727-8852746 | None:intergenic | 25.0% |
| ! | TACACACTATAGTATTTATG+TGG | + | chr3_1:8852880-8852899 | None:intergenic | 25.0% |
| ! | ATACTATAGTGTGTAGAATT+TGG | - | chr3_1:8852885-8852904 | Msa0347660:intron | 25.0% |
| ! | CATTTATCACATCAGTATAA+GGG | + | chr3_1:8853542-8853561 | None:intergenic | 25.0% |
| ! | TCATTTATCACATCAGTATA+AGG | + | chr3_1:8853543-8853562 | None:intergenic | 25.0% |
| ! | AAGATTAATGTAGCTAAACA+TGG | + | chr3_1:8853589-8853608 | None:intergenic | 25.0% |
| ! | CTATACGGTAACTATATATA+AGG | + | chr3_1:8853926-8853945 | None:intergenic | 25.0% |
| ! | ATACAACATAGGTAACTATA+CGG | + | chr3_1:8853941-8853960 | None:intergenic | 25.0% |
| TTAATCATCCATTCCTCAAA+AGG | - | chr3_1:8851460-8851479 | Msa0347660:three_prime_UTR | 30.0% | |
| !! | TAAGTTTTCCTTTTGAGGAA+TGG | + | chr3_1:8851471-8851490 | None:intergenic | 30.0% |
| ! | GTTTGTTCTATGATGTTTTG+TGG | + | chr3_1:8851590-8851609 | None:intergenic | 30.0% |
| ACATCATAGAACAAACATCA+TGG | - | chr3_1:8851594-8851613 | Msa0347660:three_prime_UTR | 30.0% | |
| AAAAAGTTGTGAAGTGAAGA+AGG | + | chr3_1:8851729-8851748 | None:intergenic | 30.0% | |
| !!! | CTTTTTTAGCTTGAAGAAGA+TGG | + | chr3_1:8851880-8851899 | None:intergenic | 30.0% |
| CATCTTCTTCAAGCTAAAAA+AGG | - | chr3_1:8851878-8851897 | Msa0347660:CDS | 30.0% | |
| TTTAGTCCCACTTCAAATAT+TGG | + | chr3_1:8852202-8852221 | None:intergenic | 30.0% | |
| ! | TATTTGAAGTGGGACTAAAA+TGG | - | chr3_1:8852203-8852222 | Msa0347660:intron | 30.0% |
| TGATCTCACATAAAGCTTAA+TGG | + | chr3_1:8852234-8852253 | None:intergenic | 30.0% | |
| TGACTTCAAATCTTTGGATT+TGG | - | chr3_1:8852272-8852291 | Msa0347660:intron | 30.0% | |
| CTATACTTTAGACCTCAATT+TGG | + | chr3_1:8852331-8852350 | None:intergenic | 30.0% | |
| ! | CAAATTGAGGTCTAAAGTAT+AGG | - | chr3_1:8852329-8852348 | Msa0347660:intron | 30.0% |
| ATGATAACTTAGGGCTTATT+TGG | - | chr3_1:8852358-8852377 | Msa0347660:intron | 30.0% | |
| TGATAACTTAGGGCTTATTT+GGG | - | chr3_1:8852359-8852378 | Msa0347660:intron | 30.0% | |
| ACACACATACATTAGTATTG+GGG | - | chr3_1:8852628-8852647 | Msa0347660:intron | 30.0% | |
| ! | ACAGCAATTTTTCCAGAATT+TGG | + | chr3_1:8852677-8852696 | None:intergenic | 30.0% |
| GATAAAATATACCGTCTTTG+TGG | - | chr3_1:8852698-8852717 | Msa0347660:intron | 30.0% | |
| GATCTAATCATGTTCAAAGT+TGG | + | chr3_1:8852795-8852814 | None:intergenic | 30.0% | |
| TGATTAGATCTTCGTATTCT+TGG | - | chr3_1:8852805-8852824 | Msa0347660:intron | 30.0% | |
| AACAGCTATTATCTAGAGAA+CGG | + | chr3_1:8852833-8852852 | None:intergenic | 30.0% | |
| ! | AGAATTAGGCTCTTTCTTTT+TGG | - | chr3_1:8852939-8852958 | Msa0347660:intron | 30.0% |
| ATTCATTACTGAACTCATGT+AGG | - | chr3_1:8853034-8853053 | Msa0347660:intron | 30.0% | |
| ACTACAATGCTATAACATAG+TGG | - | chr3_1:8853122-8853141 | Msa0347660:intron | 30.0% | |
| ATAATCACAAGCAAATGCAA+AGG | - | chr3_1:8853465-8853484 | Msa0347660:intron | 30.0% | |
| !! | GATTTGATTTGCAGTATCAT+CGG | + | chr3_1:8853703-8853722 | None:intergenic | 30.0% |
| ACAACACTCAAATACAACAT+AGG | + | chr3_1:8853952-8853971 | None:intergenic | 30.0% | |
| !! | TTAGAGATTGCAAGTTTTGT+TGG | - | chr3_1:8853972-8853991 | Msa0347660:five_prime_UTR | 30.0% |
| !!! | AGTTTTGTTGAGAAGAAGCT+TGG | + | chr3_1:8851431-8851450 | None:intergenic | 35.0% |
| TTCTTCACTTCTTCTCATCA+TGG | - | chr3_1:8851651-8851670 | Msa0347660:CDS | 35.0% | |
| GAGTTACTAGGAAGAAAAGT+TGG | + | chr3_1:8851700-8851719 | None:intergenic | 35.0% | |
| AGAAGGAAAAGAGAGTTACT+AGG | + | chr3_1:8851712-8851731 | None:intergenic | 35.0% | |
| !!! | AATTTTGAAGCGCCAAATTG+AGG | - | chr3_1:8852316-8852335 | Msa0347660:intron | 35.0% |
| GCTATCCTATATAGAGCTTA+TGG | + | chr3_1:8852480-8852499 | None:intergenic | 35.0% | |
| ACTAATGTATGTGTGTAACC+TGG | + | chr3_1:8852624-8852643 | None:intergenic | 35.0% | |
| ! | ACATACATTAGTATTGGGGA+TGG | - | chr3_1:8852632-8852651 | Msa0347660:intron | 35.0% |
| ATAGCTGTTTGAGAAAGATC+TGG | - | chr3_1:8852844-8852863 | Msa0347660:intron | 35.0% | |
| TTGCATTGAATCAATGCAAC+TGG | + | chr3_1:8852968-8852987 | None:intergenic | 35.0% | |
| TACACCATGTTGTCAAATAC+AGG | - | chr3_1:8853186-8853205 | Msa0347660:intron | 35.0% | |
| ACAACCTGTATTTGACAACA+TGG | + | chr3_1:8853193-8853212 | None:intergenic | 35.0% | |
| TTGTCAAATACAGGTTGTAG+CGG | - | chr3_1:8853195-8853214 | Msa0347660:intron | 35.0% | |
| !!! | ACGTTATTTTTCACAATCCG+CGG | - | chr3_1:8853255-8853274 | Msa0347660:intron | 35.0% |
| ! | ACTGATCTATAGCAGAGTTT+TGG | - | chr3_1:8853286-8853305 | Msa0347660:intron | 35.0% |
| AATGTAGCTAAACATGGTTG+AGG | + | chr3_1:8853583-8853602 | None:intergenic | 35.0% | |
| TTTGATGCTGAGACACTTAC+TGG | - | chr3_1:8851851-8851870 | Msa0347660:CDS | 40.0% | |
| AAGTTTATCGAAACACAGCC+AGG | - | chr3_1:8852603-8852622 | Msa0347660:intron | 40.0% | |
| !! | GGATGGACTATAGAGAAGTA+TGG | - | chr3_1:8852649-8852668 | Msa0347660:intron | 40.0% |
| ! | AGAAGTATGGCTCCAAATTC+TGG | - | chr3_1:8852662-8852681 | Msa0347660:intron | 40.0% |
| ATACATGGAAGCCACAAAGA+CGG | + | chr3_1:8852712-8852731 | None:intergenic | 40.0% | |
| TGTCAAATACAGGTTGTAGC+GGG | - | chr3_1:8853196-8853215 | Msa0347660:intron | 40.0% | |
| !!! | ATAGCAGAGTTTTGGTTGTG+TGG | - | chr3_1:8853294-8853313 | Msa0347660:intron | 40.0% |
| ! | ATCAGCAAACGCTTCTCTTT+TGG | + | chr3_1:8853384-8853403 | None:intergenic | 40.0% |
| AATGCTCCACAACATTCCTT+GGG | + | chr3_1:8853504-8853523 | None:intergenic | 40.0% | |
| AAATGCTCCACAACATTCCT+TGG | + | chr3_1:8853505-8853524 | None:intergenic | 40.0% | |
| !! | TTGATTTGCAGTATCATCGG+CGG | + | chr3_1:8853700-8853719 | None:intergenic | 40.0% |
| CACGTTCGTTATTGTTGATG+CGG | - | chr3_1:8853867-8853886 | Msa0347660:five_prime_UTR | 40.0% | |
| ACGTTCGTTATTGTTGATGC+GGG | - | chr3_1:8853868-8853887 | Msa0347660:five_prime_UTR | 40.0% | |
| ACTATGACACTGTTGCGTAG+CGG | - | chr3_1:8853220-8853239 | Msa0347660:intron | 45.0% | |
| ! | TTTTCACAATCCGCGGTTGA+CGG | - | chr3_1:8853262-8853281 | Msa0347660:intron | 45.0% |
| !! | CATGTACTGGTTTGTGTGTG+TGG | - | chr3_1:8853339-8853358 | Msa0347660:intron | 45.0% |
| TTGTTTCACATTGCACCTGC+AGG | - | chr3_1:8853408-8853427 | Msa0347660:intron | 45.0% | |
| AAATTCACAGAACAGCCTGC+AGG | + | chr3_1:8853426-8853445 | None:intergenic | 45.0% | |
| CTTTATGGAAGATACCCTCC+TGG | - | chr3_1:8853606-8853625 | Msa0347660:intron | 45.0% | |
| ACATACTCCATCTCTAGTGC+TGG | - | chr3_1:8853725-8853744 | Msa0347660:CDS | 45.0% | |
| ! | GTGTTGTTACATAGCCGCTG+TGG | - | chr3_1:8853095-8853114 | Msa0347660:intron | 50.0% |
| !! | CATTCCTTGGGAGGGTACTT+AGG | + | chr3_1:8853492-8853511 | None:intergenic | 50.0% |
| TACCCTCCCAAGGAATGTTG+TGG | - | chr3_1:8853495-8853514 | Msa0347660:intron | 50.0% | |
| CTCCACAACATTCCTTGGGA+GGG | + | chr3_1:8853500-8853519 | None:intergenic | 50.0% | |
| GCATTGTAGTGCTGCCACAG+CGG | + | chr3_1:8853112-8853131 | None:intergenic | 55.0% | |
| TAGATCAGTGCCGTCAACCG+CGG | + | chr3_1:8853275-8853294 | None:intergenic | 55.0% | |
| AGGACCTAAGTACCCTCCCA+AGG | - | chr3_1:8853485-8853504 | Msa0347660:intron | 55.0% | |
| GCTCCACAACATTCCTTGGG+AGG | + | chr3_1:8853501-8853520 | None:intergenic | 55.0% | |
| ! | TTTGCGAGCGAGTGTCGTGA+AGG | - | chr3_1:8853633-8853652 | Msa0347660:intron | 55.0% |
| ! | TTGCGAGCGAGTGTCGTGAA+GGG | - | chr3_1:8853634-8853653 | Msa0347660:intron | 55.0% |
| ! | GAGTGTCGTGAAGGGAAGGA+AGG | - | chr3_1:8853642-8853661 | Msa0347660:intron | 55.0% |
| GTATCATCGGCGGACACTGA+TGG | + | chr3_1:8853690-8853709 | None:intergenic | 55.0% | |
| GTGAGCACCAGCACTAGAGA+TGG | + | chr3_1:8853735-8853754 | None:intergenic | 55.0% | |
| CACGACACTCGCTCGCAAAG+AGG | + | chr3_1:8853632-8853651 | None:intergenic | 60.0% | |
| ! | GAGCGAGTGTCGTGAAGGGA+AGG | - | chr3_1:8853638-8853657 | Msa0347660:intron | 60.0% |
| TCATCGGCGGACACTGATGG+TGG | + | chr3_1:8853687-8853706 | None:intergenic | 60.0% | |
| CGCTCGCAAAGAGGCCAGGA+GGG | + | chr3_1:8853623-8853642 | None:intergenic | 65.0% | |
| TCGCTCGCAAAGAGGCCAGG+AGG | + | chr3_1:8853624-8853643 | None:intergenic | 65.0% | |
| CACTCGCTCGCAAAGAGGCC+AGG | + | chr3_1:8853627-8853646 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 8851387 | 8854042 | 8851387 | ID=Msa0347660;Name=Msa0347660 |
| chr3_1 | mRNA | 8851387 | 8854042 | 8851387 | ID=Msa0347660-mRNA-1;Parent=Msa0347660;Name=Msa0347660-mRNA-1;_AED=0.03;_eAED=0.03;_QI=226|1|1|1|1|1|3|257|170 |
| chr3_1 | exon | 8851387 | 8851999 | 8851387 | ID=Msa0347660-mRNA-1:exon:2557;Parent=Msa0347660-mRNA-1 |
| chr3_1 | exon | 8853530 | 8853586 | 8853530 | ID=Msa0347660-mRNA-1:exon:2556;Parent=Msa0347660-mRNA-1 |
| chr3_1 | exon | 8853717 | 8854042 | 8853717 | ID=Msa0347660-mRNA-1:exon:2555;Parent=Msa0347660-mRNA-1 |
| chr3_1 | five_prime_UTR | 8853817 | 8854042 | 8853817 | ID=Msa0347660-mRNA-1:five_prime_utr;Parent=Msa0347660-mRNA-1 |
| chr3_1 | CDS | 8853717 | 8853816 | 8853717 | ID=Msa0347660-mRNA-1:cds;Parent=Msa0347660-mRNA-1 |
| chr3_1 | CDS | 8853530 | 8853586 | 8853530 | ID=Msa0347660-mRNA-1:cds;Parent=Msa0347660-mRNA-1 |
| chr3_1 | CDS | 8851644 | 8851999 | 8851644 | ID=Msa0347660-mRNA-1:cds;Parent=Msa0347660-mRNA-1 |
| chr3_1 | three_prime_UTR | 8851387 | 8851643 | 8851387 | ID=Msa0347660-mRNA-1:three_prime_utr;Parent=Msa0347660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
