Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089100 | XP_003597603.1 | 94.318 | 264 | 10 | 2 | 1 | 263 | 1 | 260 | 5.35e-145 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089100 | sp|Q9ZVD2|NHL13_ARATH | 31.557 | 244 | 142 | 7 | 1 | 227 | 1 | 236 | 1.52e-29 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089100 | A2Q440 | 94.318 | 264 | 10 | 2 | 1 | 263 | 1 | 260 | 2.56e-145 | 416 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071370 | Msa1089100 | 0.806308 | 8.761102e-50 | -8.615850e-47 |
| Msa0690930 | Msa1089100 | 0.827791 | 1.287316e-54 | -8.615850e-47 |
| Msa0404070 | Msa1089100 | -0.804219 | 2.399788e-49 | -8.615850e-47 |
| Msa0442260 | Msa1089100 | 0.844853 | 5.846289e-59 | -8.615850e-47 |
| Msa1041410 | Msa1089100 | 0.822330 | 2.510078e-53 | -8.615850e-47 |
| Msa1089100 | Msa1166600 | 0.823296 | 1.495339e-53 | -8.615850e-47 |
| Msa1089100 | Msa1255020 | -0.803200 | 3.905317e-49 | -8.615850e-47 |
| Msa1089100 | Msa1295470 | -0.803526 | 3.342594e-49 | -8.615850e-47 |
| Msa0253160 | Msa1089100 | -0.822019 | 2.963724e-53 | -8.615850e-47 |
| Msa0291940 | Msa1089100 | -0.823783 | 1.150054e-53 | -8.615850e-47 |
| Msa0347660 | Msa1089100 | 0.850093 | 2.121537e-60 | -8.615850e-47 |
| Msa0553950 | Msa1089100 | 0.803719 | 3.048677e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089100 | MtrunA17_Chr2g0330241 | 94.318 | 264 | 10 | 2 | 1 | 263 | 1 | 260 | 4.92e-149 | 416 |
| Msa1089100 | MtrunA17_Chr8g0342091 | 47.104 | 259 | 97 | 6 | 5 | 263 | 7 | 225 | 4.85e-71 | 218 |
| Msa1089100 | MtrunA17_Chr3g0135711 | 42.481 | 266 | 133 | 8 | 7 | 262 | 4 | 259 | 2.84e-66 | 206 |
| Msa1089100 | MtrunA17_Chr5g0440571 | 30.041 | 243 | 142 | 7 | 1 | 227 | 1 | 231 | 1.36e-29 | 112 |
| Msa1089100 | MtrunA17_Chr5g0433201 | 34.343 | 198 | 121 | 4 | 31 | 226 | 47 | 237 | 5.26e-24 | 97.4 |
| Msa1089100 | MtrunA17_Chr2g0281401 | 29.864 | 221 | 134 | 6 | 18 | 230 | 40 | 247 | 4.49e-23 | 95.1 |
| Msa1089100 | MtrunA17_Chr3g0118371 | 28.750 | 240 | 147 | 6 | 1 | 227 | 1 | 229 | 2.98e-22 | 92.8 |
| Msa1089100 | MtrunA17_Chr7g0267281 | 28.947 | 228 | 145 | 9 | 34 | 253 | 7 | 225 | 2.58e-20 | 86.7 |
| Msa1089100 | MtrunA17_Chr3g0109121 | 32.867 | 143 | 92 | 3 | 86 | 226 | 86 | 226 | 4.85e-19 | 84.0 |
| Msa1089100 | MtrunA17_Chr1g0188801 | 30.000 | 190 | 130 | 2 | 61 | 249 | 60 | 247 | 4.16e-18 | 81.3 |
| Msa1089100 | MtrunA17_Chr7g0267231 | 29.245 | 212 | 126 | 10 | 53 | 254 | 29 | 226 | 1.50e-15 | 73.6 |
| Msa1089100 | MtrunA17_Chr4g0067041 | 27.805 | 205 | 127 | 5 | 41 | 227 | 11 | 212 | 2.52e-14 | 70.5 |
| Msa1089100 | MtrunA17_Chr7g0276371 | 27.895 | 190 | 127 | 4 | 69 | 254 | 46 | 229 | 5.44e-14 | 69.3 |
| Msa1089100 | MtrunA17_Chr3g0118391 | 29.078 | 141 | 99 | 1 | 87 | 227 | 44 | 183 | 7.81e-14 | 68.6 |
| Msa1089100 | MtrunA17_Chr1g0177471 | 25.824 | 182 | 123 | 6 | 84 | 259 | 72 | 247 | 1.16e-13 | 68.9 |
| Msa1089100 | MtrunA17_Chr6g0479071 | 25.786 | 159 | 113 | 4 | 61 | 215 | 2 | 159 | 9.20e-13 | 65.9 |
| Msa1089100 | MtrunA17_Chr2g0280851 | 23.429 | 175 | 127 | 2 | 80 | 254 | 35 | 202 | 9.36e-13 | 65.5 |
| Msa1089100 | MtrunA17_Chr3g0108271 | 22.905 | 179 | 132 | 4 | 62 | 238 | 66 | 240 | 4.26e-12 | 64.3 |
| Msa1089100 | MtrunA17_Chr7g0275351 | 26.829 | 205 | 129 | 5 | 30 | 229 | 33 | 221 | 4.31e-12 | 64.3 |
| Msa1089100 | MtrunA17_Chr6g0478671 | 27.160 | 162 | 99 | 5 | 60 | 215 | 9 | 157 | 7.16e-12 | 63.2 |
| Msa1089100 | MtrunA17_Chr3g0115651 | 21.827 | 197 | 138 | 4 | 37 | 227 | 36 | 222 | 1.68e-11 | 62.8 |
| Msa1089100 | MtrunA17_Chr6g0479081 | 26.882 | 186 | 116 | 8 | 62 | 235 | 2 | 179 | 2.16e-11 | 62.0 |
| Msa1089100 | MtrunA17_Chr7g0267301 | 26.887 | 212 | 133 | 9 | 54 | 252 | 27 | 229 | 3.31e-11 | 61.6 |
| Msa1089100 | MtrunA17_Chr3g0127951 | 26.619 | 139 | 99 | 3 | 92 | 229 | 49 | 185 | 5.85e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1089100 | AT1G17620.1 | 47.015 | 268 | 126 | 4 | 3 | 262 | 4 | 263 | 4.96e-64 | 201 |
| Msa1089100 | AT5G11890.1 | 35.254 | 295 | 149 | 9 | 1 | 262 | 1 | 286 | 8.58e-45 | 152 |
| Msa1089100 | AT2G27080.1 | 31.557 | 244 | 142 | 7 | 1 | 227 | 1 | 236 | 1.55e-30 | 115 |
| Msa1089100 | AT2G27080.2 | 31.557 | 244 | 142 | 7 | 1 | 227 | 1 | 236 | 1.55e-30 | 115 |
| Msa1089100 | AT1G65690.1 | 31.056 | 161 | 107 | 3 | 68 | 226 | 68 | 226 | 5.33e-21 | 89.4 |
| Msa1089100 | AT5G36970.1 | 27.586 | 261 | 173 | 8 | 1 | 258 | 1 | 248 | 3.13e-19 | 84.7 |
| Msa1089100 | AT2G35980.1 | 27.982 | 218 | 151 | 5 | 40 | 253 | 11 | 226 | 1.18e-17 | 79.7 |
| Msa1089100 | AT5G21130.1 | 26.437 | 174 | 126 | 2 | 54 | 226 | 84 | 256 | 3.24e-17 | 79.7 |
| Msa1089100 | AT3G11650.1 | 26.131 | 199 | 139 | 6 | 60 | 254 | 45 | 239 | 3.14e-16 | 76.3 |
| Msa1089100 | AT1G54540.1 | 28.037 | 214 | 149 | 3 | 37 | 249 | 27 | 236 | 5.59e-16 | 75.5 |
| Msa1089100 | AT5G06320.1 | 27.660 | 188 | 126 | 5 | 70 | 253 | 49 | 230 | 2.64e-14 | 70.9 |
| Msa1089100 | AT4G01410.1 | 23.737 | 198 | 138 | 5 | 59 | 254 | 41 | 227 | 8.52e-13 | 66.6 |
| Msa1089100 | AT4G01110.1 | 25.888 | 197 | 122 | 5 | 75 | 261 | 74 | 256 | 2.79e-12 | 65.5 |
| Msa1089100 | AT5G22870.1 | 23.158 | 190 | 133 | 3 | 68 | 254 | 28 | 207 | 4.49e-12 | 63.9 |
| Msa1089100 | AT2G46300.1 | 28.662 | 157 | 103 | 4 | 84 | 232 | 77 | 232 | 1.69e-11 | 63.2 |
| Msa1089100 | AT2G27260.1 | 25.926 | 216 | 149 | 4 | 31 | 244 | 31 | 237 | 7.75e-11 | 61.2 |
| Msa1089100 | AT5G53730.1 | 25.269 | 186 | 126 | 5 | 72 | 254 | 38 | 213 | 8.46e-11 | 60.5 |
Find 85 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGAAGTTGACGCCGTTAC+TGG | 0.277675 | 7_3:-2431992 | None:intergenic |
| GCTGCTGCACCTTCTTCTTC+TGG | 0.279365 | 7_3:+2431456 | Msa1089100:CDS |
| CTTCTCCTCCTCGGCGTAAC+GGG | 0.331250 | 7_3:+2431503 | Msa1089100:CDS |
| ACGAAGGTGATATGTTTGTT+AGG | 0.332211 | 7_3:-2431659 | None:intergenic |
| TGCTTGACCAGTACTCAAAA+TGG | 0.356336 | 7_3:-2431789 | None:intergenic |
| TTGGTCATGGGTTTGGCGGC+GGG | 0.359331 | 7_3:-2431293 | None:intergenic |
| CGAAGGTGATATGTTTGTTA+GGG | 0.379442 | 7_3:-2431658 | None:intergenic |
| AGCAGCAACGGCGGCGGGTA+CGG | 0.382447 | 7_3:-2431439 | None:intergenic |
| CTTCATCAATTAAATTTAAA+CGG | 0.385881 | 7_3:-2432059 | None:intergenic |
| GACACCGTTGCCGTTGGTCA+TGG | 0.391670 | 7_3:-2431306 | None:intergenic |
| GTTGCCGTTGGTCATGGGTT+TGG | 0.392896 | 7_3:-2431300 | None:intergenic |
| TGGAGGAGGAGGTGAGGTTG+AGG | 0.394091 | 7_3:-2431595 | None:intergenic |
| TGAGTTGAGGGTGGAGGAGG+AGG | 0.397719 | 7_3:-2431606 | None:intergenic |
| GGTGCAGCAGCAACGGCGGC+GGG | 0.411032 | 7_3:-2431444 | None:intergenic |
| GTTGGTCATGGGTTTGGCGG+CGG | 0.419990 | 7_3:-2431294 | None:intergenic |
| TACAAAAGTGAAGGCTAAAG+TGG | 0.436063 | 7_3:+2431889 | Msa1089100:CDS |
| TTGATGTTAGGTTTAAGATC+TGG | 0.438319 | 7_3:+2432029 | Msa1089100:CDS |
| CCTTCTCCTCCTCGGCGTAA+CGG | 0.438746 | 7_3:+2431502 | Msa1089100:CDS |
| TGAGGGTGGAGGAGGAGGTG+AGG | 0.440148 | 7_3:-2431601 | None:intergenic |
| TTAAGTGTGATGTTGATGTT+AGG | 0.446188 | 7_3:+2432017 | Msa1089100:CDS |
| GGAAAGTTTGAGAGATGTTA+CGG | 0.447386 | 7_3:-2431570 | None:intergenic |
| ACACCGTTGCCGTTGGTCAT+GGG | 0.448685 | 7_3:-2431305 | None:intergenic |
| GGAGGAGGTGAGGTTGAGGT+AGG | 0.450411 | 7_3:-2431591 | None:intergenic |
| GAAGGAGGATGAGAAGTATG+AGG | 0.450998 | 7_3:-2431484 | None:intergenic |
| TTTAGCGTTGAAAGTGAAGT+TGG | 0.454211 | 7_3:+2431865 | Msa1089100:CDS |
| TGAGGTTGTGGACGGTAGGT+AGG | 0.457022 | 7_3:-2431410 | None:intergenic |
| AACGGCGGCGGGTACGGCGG+TGG | 0.458183 | 7_3:-2431433 | None:intergenic |
| GTACGGCGGTGGTGAGGTTG+TGG | 0.465045 | 7_3:-2431422 | None:intergenic |
| GTAACTCTTATTCCAACGTT+AGG | 0.471241 | 7_3:-2431926 | None:intergenic |
| GGCTGGAAATGATGGGTTTG+CGG | 0.475941 | 7_3:-2431357 | None:intergenic |
| AGGTGCAGCAGCAACGGCGG+CGG | 0.477876 | 7_3:-2431445 | None:intergenic |
| AGAAGAAGGTGCAGCAGCAA+CGG | 0.479402 | 7_3:-2431451 | None:intergenic |
| TTAGGTTTAAGATCTGGAAA+TGG | 0.481195 | 7_3:+2432035 | Msa1089100:CDS |
| TTCTTGCCATGTGTGAAAGT+TGG | 0.485690 | 7_3:-2431743 | None:intergenic |
| GAGAGAATTGTGATGGTGGT+TGG | 0.496275 | 7_3:-2431689 | None:intergenic |
| CTCATCCTCCTTCTCCTCCT+CGG | 0.497763 | 7_3:+2431494 | Msa1089100:CDS |
| GCCGTTGGTCATGGGTTTGG+CGG | 0.502360 | 7_3:-2431297 | None:intergenic |
| GAGGTTGTGGACGGTAGGTA+GGG | 0.503122 | 7_3:-2431409 | None:intergenic |
| TTTGAGAGATGTTACGGTGA+AGG | 0.503461 | 7_3:-2431564 | None:intergenic |
| CCGTTACGCCGAGGAGGAGA+AGG | 0.513542 | 7_3:-2431502 | None:intergenic |
| ACTGGTTTCTTATTACCGAC+AGG | 0.516093 | 7_3:-2431974 | None:intergenic |
| GTTTGAGAGAATTGTGATGG+TGG | 0.523617 | 7_3:-2431693 | None:intergenic |
| TTGTGGACGGTAGGTAGGGC+GGG | 0.525214 | 7_3:-2431405 | None:intergenic |
| AGCAACGGCGGCGGGTACGG+CGG | 0.526300 | 7_3:-2431436 | None:intergenic |
| CGGCGGGTACGGCGGTGGTG+AGG | 0.527713 | 7_3:-2431428 | None:intergenic |
| GCCATGTGTGAAAGTTGGTA+TGG | 0.529809 | 7_3:-2431738 | None:intergenic |
| GTTGTGGACGGTAGGTAGGG+CGG | 0.531506 | 7_3:-2431406 | None:intergenic |
| GCCACAAAAGCTCAACTCTA+CGG | 0.539658 | 7_3:+2431377 | Msa1089100:CDS |
| GTGGTGAGGTTGTGGACGGT+AGG | 0.539763 | 7_3:-2431414 | None:intergenic |
| GTTGTTTGAGAGAATTGTGA+TGG | 0.543870 | 7_3:-2431696 | None:intergenic |
| TACGGTGAAGGAAGGACGGT+GGG | 0.551852 | 7_3:-2431552 | None:intergenic |
| TGAAGGAAGGACGGTGGGGA+CGG | 0.553633 | 7_3:-2431547 | None:intergenic |
| AACGGTGTCACCAACGGTAA+CGG | 0.557429 | 7_3:+2431320 | Msa1089100:CDS |
| AGAGATGTTACGGTGAAGGA+AGG | 0.565773 | 7_3:-2431560 | None:intergenic |
| GTCACCAACGGTAACGGTAA+CGG | 0.571662 | 7_3:+2431326 | Msa1089100:CDS |
| GTTGGTGACACCGTTGCCGT+TGG | 0.575232 | 7_3:-2431312 | None:intergenic |
| GACGGTGGGGACGGTAGATG+AGG | 0.578731 | 7_3:-2431538 | None:intergenic |
| AACGGCAACGGTGTCACCAA+CGG | 0.582278 | 7_3:+2431314 | Msa1089100:CDS |
| AGAAGGTGCAGCAGCAACGG+CGG | 0.583077 | 7_3:-2431448 | None:intergenic |
| GAAGTTGGATACAAAAGTGA+AGG | 0.584664 | 7_3:+2431880 | Msa1089100:CDS |
| ATTAGAATCAGACGCTTCCA+CGG | 0.587238 | 7_3:+2431811 | Msa1089100:CDS |
| GAATTGTGATGGTGGTTGGT+TGG | 0.587560 | 7_3:-2431685 | None:intergenic |
| CATGTTCTTCTTCAGCTCCG+TGG | 0.589253 | 7_3:-2431828 | None:intergenic |
| GTTAGAGTTCATGTTCCTGT+CGG | 0.590463 | 7_3:+2431959 | Msa1089100:CDS |
| AAACCCATGACCAACGGCAA+CGG | 0.592031 | 7_3:+2431302 | Msa1089100:CDS |
| GAGGAAGAACCAGAAGAAGA+AGG | 0.593450 | 7_3:-2431465 | None:intergenic |
| AACAACATCAACATCGGTGA+AGG | 0.594037 | 7_3:+2431713 | Msa1089100:CDS |
| GCCGCCAAACCCATGACCAA+CGG | 0.597855 | 7_3:+2431296 | Msa1089100:CDS |
| AAAATGAAAACACCTAACGT+TGG | 0.600696 | 7_3:+2431914 | Msa1089100:CDS |
| TGGACGGTAGGTAGGGCGGG+TGG | 0.609236 | 7_3:-2431402 | None:intergenic |
| ACAAAAGTGAAGGCTAAAGT+GGG | 0.615350 | 7_3:+2431890 | Msa1089100:CDS |
| CTCTCAAACAACATCAACAT+CGG | 0.615638 | 7_3:+2431707 | Msa1089100:CDS |
| GACACCGTTACCGTTACCGT+TGG | 0.628131 | 7_3:-2431330 | None:intergenic |
| GGAATAAGAGTTACATGTGA+CGG | 0.629815 | 7_3:+2431935 | Msa1089100:CDS |
| TTACGCCGAGGAGGAGAAGG+AGG | 0.630487 | 7_3:-2431499 | None:intergenic |
| GGCGGTGGTGAGGTTGTGGA+CGG | 0.633011 | 7_3:-2431418 | None:intergenic |
| TGGAAATGATGGGTTTGCGG+CGG | 0.637844 | 7_3:-2431354 | None:intergenic |
| ACCATACCAACTTTCACACA+TGG | 0.645797 | 7_3:+2431737 | Msa1089100:CDS |
| CGGTGCCCGTTACGCCGAGG+AGG | 0.646188 | 7_3:-2431508 | None:intergenic |
| ATGTTACGGTGAAGGAAGGA+CGG | 0.655102 | 7_3:-2431556 | None:intergenic |
| TTACGGTGAAGGAAGGACGG+TGG | 0.673058 | 7_3:-2431553 | None:intergenic |
| CGGTAATAAGAAACCAGTAA+CGG | 0.676522 | 7_3:+2431979 | Msa1089100:CDS |
| ACGGTAGATGAGGTAGAAAG+CGG | 0.681553 | 7_3:-2431528 | None:intergenic |
| GGTGGTTGGTTGGTAAACGA+AGG | 0.694931 | 7_3:-2431675 | None:intergenic |
| ACGGTGAAGGAAGGACGGTG+GGG | 0.703670 | 7_3:-2431551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTTCCATTTTGAGTAC+TGG | + | chr7_3:2431782-2431801 | Msa1089100:CDS | 30.0% |
| AAGAACATGAAGAGCAAAAA+CGG | + | chr7_3:2431842-2431861 | Msa1089100:CDS | 30.0% | |
| AAAATGAAAACACCTAACGT+TGG | + | chr7_3:2431914-2431933 | Msa1089100:CDS | 30.0% | |
| TTAAGTGTGATGTTGATGTT+AGG | + | chr7_3:2432017-2432036 | Msa1089100:CDS | 30.0% | |
| ! | TTGATGTTAGGTTTAAGATC+TGG | + | chr7_3:2432029-2432048 | Msa1089100:CDS | 30.0% |
| ! | TTAGGTTTAAGATCTGGAAA+TGG | + | chr7_3:2432035-2432054 | Msa1089100:CDS | 30.0% |
| !! | AAATCTTCCATTTTGAGTAC+TGG | + | chr7_3:2431782-2431801 | Msa1089100:CDS | 30.0% |
| AAGAACATGAAGAGCAAAAA+CGG | + | chr7_3:2431842-2431861 | Msa1089100:CDS | 30.0% | |
| AAAATGAAAACACCTAACGT+TGG | + | chr7_3:2431914-2431933 | Msa1089100:CDS | 30.0% | |
| TTAAGTGTGATGTTGATGTT+AGG | + | chr7_3:2432017-2432036 | Msa1089100:CDS | 30.0% | |
| ! | TTGATGTTAGGTTTAAGATC+TGG | + | chr7_3:2432029-2432048 | Msa1089100:CDS | 30.0% |
| ! | TTAGGTTTAAGATCTGGAAA+TGG | + | chr7_3:2432035-2432054 | Msa1089100:CDS | 30.0% |
| GGAAAGTTTGAGAGATGTTA+CGG | - | chr7_3:2431573-2431592 | None:intergenic | 35.0% | |
| !!! | GACGTTGAATTTTGAGTTGA+GGG | - | chr7_3:2431621-2431640 | None:intergenic | 35.0% |
| !!! | TGACGTTGAATTTTGAGTTG+AGG | - | chr7_3:2431622-2431641 | None:intergenic | 35.0% |
| ! | CGAAGGTGATATGTTTGTTA+GGG | - | chr7_3:2431661-2431680 | None:intergenic | 35.0% |
| ACGAAGGTGATATGTTTGTT+AGG | - | chr7_3:2431662-2431681 | None:intergenic | 35.0% | |
| GTTGTTTGAGAGAATTGTGA+TGG | - | chr7_3:2431699-2431718 | None:intergenic | 35.0% | |
| CTCTCAAACAACATCAACAT+CGG | + | chr7_3:2431707-2431726 | Msa1089100:CDS | 35.0% | |
| ! | TTTAGCGTTGAAAGTGAAGT+TGG | + | chr7_3:2431865-2431884 | Msa1089100:CDS | 35.0% |
| GAAGTTGGATACAAAAGTGA+AGG | + | chr7_3:2431880-2431899 | Msa1089100:CDS | 35.0% | |
| TACAAAAGTGAAGGCTAAAG+TGG | + | chr7_3:2431889-2431908 | Msa1089100:CDS | 35.0% | |
| ACAAAAGTGAAGGCTAAAGT+GGG | + | chr7_3:2431890-2431909 | Msa1089100:CDS | 35.0% | |
| GTAACTCTTATTCCAACGTT+AGG | - | chr7_3:2431929-2431948 | None:intergenic | 35.0% | |
| GGAATAAGAGTTACATGTGA+CGG | + | chr7_3:2431935-2431954 | Msa1089100:CDS | 35.0% | |
| CGGTAATAAGAAACCAGTAA+CGG | + | chr7_3:2431979-2431998 | Msa1089100:CDS | 35.0% | |
| GGAAAGTTTGAGAGATGTTA+CGG | - | chr7_3:2431573-2431592 | None:intergenic | 35.0% | |
| !!! | GACGTTGAATTTTGAGTTGA+GGG | - | chr7_3:2431621-2431640 | None:intergenic | 35.0% |
| !!! | TGACGTTGAATTTTGAGTTG+AGG | - | chr7_3:2431622-2431641 | None:intergenic | 35.0% |
| ! | CGAAGGTGATATGTTTGTTA+GGG | - | chr7_3:2431661-2431680 | None:intergenic | 35.0% |
| ACGAAGGTGATATGTTTGTT+AGG | - | chr7_3:2431662-2431681 | None:intergenic | 35.0% | |
| GTTGTTTGAGAGAATTGTGA+TGG | - | chr7_3:2431699-2431718 | None:intergenic | 35.0% | |
| CTCTCAAACAACATCAACAT+CGG | + | chr7_3:2431707-2431726 | Msa1089100:CDS | 35.0% | |
| ! | TTTAGCGTTGAAAGTGAAGT+TGG | + | chr7_3:2431865-2431884 | Msa1089100:CDS | 35.0% |
| GAAGTTGGATACAAAAGTGA+AGG | + | chr7_3:2431880-2431899 | Msa1089100:CDS | 35.0% | |
| TACAAAAGTGAAGGCTAAAG+TGG | + | chr7_3:2431889-2431908 | Msa1089100:CDS | 35.0% | |
| ACAAAAGTGAAGGCTAAAGT+GGG | + | chr7_3:2431890-2431909 | Msa1089100:CDS | 35.0% | |
| GTAACTCTTATTCCAACGTT+AGG | - | chr7_3:2431929-2431948 | None:intergenic | 35.0% | |
| GGAATAAGAGTTACATGTGA+CGG | + | chr7_3:2431935-2431954 | Msa1089100:CDS | 35.0% | |
| CGGTAATAAGAAACCAGTAA+CGG | + | chr7_3:2431979-2431998 | Msa1089100:CDS | 35.0% | |
| ! | CTTTTGTGGCTGGAAATGAT+GGG | - | chr7_3:2431367-2431386 | None:intergenic | 40.0% |
| TTTGAGAGATGTTACGGTGA+AGG | - | chr7_3:2431567-2431586 | None:intergenic | 40.0% | |
| !!! | GTTGAATTTTGAGTTGAGGG+TGG | - | chr7_3:2431618-2431637 | None:intergenic | 40.0% |
| GTTTGAGAGAATTGTGATGG+TGG | - | chr7_3:2431696-2431715 | None:intergenic | 40.0% | |
| AACAACATCAACATCGGTGA+AGG | + | chr7_3:2431713-2431732 | Msa1089100:CDS | 40.0% | |
| ACCATACCAACTTTCACACA+TGG | + | chr7_3:2431737-2431756 | Msa1089100:CDS | 40.0% | |
| TTCTTGCCATGTGTGAAAGT+TGG | - | chr7_3:2431746-2431765 | None:intergenic | 40.0% | |
| TGCTTGACCAGTACTCAAAA+TGG | - | chr7_3:2431792-2431811 | None:intergenic | 40.0% | |
| ATTAGAATCAGACGCTTCCA+CGG | + | chr7_3:2431811-2431830 | Msa1089100:CDS | 40.0% | |
| GTTAGAGTTCATGTTCCTGT+CGG | + | chr7_3:2431959-2431978 | Msa1089100:CDS | 40.0% | |
| ! | ACTGGTTTCTTATTACCGAC+AGG | - | chr7_3:2431977-2431996 | None:intergenic | 40.0% |
| ! | CTTTTGTGGCTGGAAATGAT+GGG | - | chr7_3:2431367-2431386 | None:intergenic | 40.0% |
| TTTGAGAGATGTTACGGTGA+AGG | - | chr7_3:2431567-2431586 | None:intergenic | 40.0% | |
| !!! | GTTGAATTTTGAGTTGAGGG+TGG | - | chr7_3:2431618-2431637 | None:intergenic | 40.0% |
| GTTTGAGAGAATTGTGATGG+TGG | - | chr7_3:2431696-2431715 | None:intergenic | 40.0% | |
| AACAACATCAACATCGGTGA+AGG | + | chr7_3:2431713-2431732 | Msa1089100:CDS | 40.0% | |
| ACCATACCAACTTTCACACA+TGG | + | chr7_3:2431737-2431756 | Msa1089100:CDS | 40.0% | |
| TTCTTGCCATGTGTGAAAGT+TGG | - | chr7_3:2431746-2431765 | None:intergenic | 40.0% | |
| TGCTTGACCAGTACTCAAAA+TGG | - | chr7_3:2431792-2431811 | None:intergenic | 40.0% | |
| ATTAGAATCAGACGCTTCCA+CGG | + | chr7_3:2431811-2431830 | Msa1089100:CDS | 40.0% | |
| GTTAGAGTTCATGTTCCTGT+CGG | + | chr7_3:2431959-2431978 | Msa1089100:CDS | 40.0% | |
| ! | ACTGGTTTCTTATTACCGAC+AGG | - | chr7_3:2431977-2431996 | None:intergenic | 40.0% |
| ! | GCTTTTGTGGCTGGAAATGA+TGG | - | chr7_3:2431368-2431387 | None:intergenic | 45.0% |
| ! | TAGAGTTGAGCTTTTGTGGC+TGG | - | chr7_3:2431377-2431396 | None:intergenic | 45.0% |
| GCCACAAAAGCTCAACTCTA+CGG | + | chr7_3:2431377-2431396 | Msa1089100:CDS | 45.0% | |
| ! | ACCGTAGAGTTGAGCTTTTG+TGG | - | chr7_3:2431381-2431400 | None:intergenic | 45.0% |
| GAGGAAGAACCAGAAGAAGA+AGG | - | chr7_3:2431468-2431487 | None:intergenic | 45.0% | |
| ! | GAAGGAGGATGAGAAGTATG+AGG | - | chr7_3:2431487-2431506 | None:intergenic | 45.0% |
| ACGGTAGATGAGGTAGAAAG+CGG | - | chr7_3:2431531-2431550 | None:intergenic | 45.0% | |
| ATGTTACGGTGAAGGAAGGA+CGG | - | chr7_3:2431559-2431578 | None:intergenic | 45.0% | |
| AGAGATGTTACGGTGAAGGA+AGG | - | chr7_3:2431563-2431582 | None:intergenic | 45.0% | |
| !!! | GAATTTTGAGTTGAGGGTGG+AGG | - | chr7_3:2431615-2431634 | None:intergenic | 45.0% |
| !! | GAATTGTGATGGTGGTTGGT+TGG | - | chr7_3:2431688-2431707 | None:intergenic | 45.0% |
| !! | GAGAGAATTGTGATGGTGGT+TGG | - | chr7_3:2431692-2431711 | None:intergenic | 45.0% |
| !! | GCCATGTGTGAAAGTTGGTA+TGG | - | chr7_3:2431741-2431760 | None:intergenic | 45.0% |
| ! | GCTTTTGTGGCTGGAAATGA+TGG | - | chr7_3:2431368-2431387 | None:intergenic | 45.0% |
| ! | TAGAGTTGAGCTTTTGTGGC+TGG | - | chr7_3:2431377-2431396 | None:intergenic | 45.0% |
| GCCACAAAAGCTCAACTCTA+CGG | + | chr7_3:2431377-2431396 | Msa1089100:CDS | 45.0% | |
| ! | ACCGTAGAGTTGAGCTTTTG+TGG | - | chr7_3:2431381-2431400 | None:intergenic | 45.0% |
| GAGGAAGAACCAGAAGAAGA+AGG | - | chr7_3:2431468-2431487 | None:intergenic | 45.0% | |
| ! | GAAGGAGGATGAGAAGTATG+AGG | - | chr7_3:2431487-2431506 | None:intergenic | 45.0% |
| ACGGTAGATGAGGTAGAAAG+CGG | - | chr7_3:2431531-2431550 | None:intergenic | 45.0% | |
| ATGTTACGGTGAAGGAAGGA+CGG | - | chr7_3:2431559-2431578 | None:intergenic | 45.0% | |
| AGAGATGTTACGGTGAAGGA+AGG | - | chr7_3:2431563-2431582 | None:intergenic | 45.0% | |
| !!! | GAATTTTGAGTTGAGGGTGG+AGG | - | chr7_3:2431615-2431634 | None:intergenic | 45.0% |
| !! | GAATTGTGATGGTGGTTGGT+TGG | - | chr7_3:2431688-2431707 | None:intergenic | 45.0% |
| !! | GAGAGAATTGTGATGGTGGT+TGG | - | chr7_3:2431692-2431711 | None:intergenic | 45.0% |
| !! | GCCATGTGTGAAAGTTGGTA+TGG | - | chr7_3:2431741-2431760 | None:intergenic | 45.0% |
| AAACCCATGACCAACGGCAA+CGG | + | chr7_3:2431302-2431321 | Msa1089100:CDS | 50.0% | |
| !! | AACGGTGTCACCAACGGTAA+CGG | + | chr7_3:2431320-2431339 | Msa1089100:CDS | 50.0% |
| ! | GTCACCAACGGTAACGGTAA+CGG | + | chr7_3:2431326-2431345 | Msa1089100:CDS | 50.0% |
| !! | TGGAAATGATGGGTTTGCGG+CGG | - | chr7_3:2431357-2431376 | None:intergenic | 50.0% |
| !! | GGCTGGAAATGATGGGTTTG+CGG | - | chr7_3:2431360-2431379 | None:intergenic | 50.0% |
| ! | AGAAGAAGGTGCAGCAGCAA+CGG | - | chr7_3:2431454-2431473 | None:intergenic | 50.0% |
| !!! | TTTTGAGTTGAGGGTGGAGG+AGG | - | chr7_3:2431612-2431631 | None:intergenic | 50.0% |
| !! | GGTGGTTGGTTGGTAAACGA+AGG | - | chr7_3:2431678-2431697 | None:intergenic | 50.0% |
| CATGTTCTTCTTCAGCTCCG+TGG | - | chr7_3:2431831-2431850 | None:intergenic | 50.0% | |
| TTCGAAGTTGACGCCGTTAC+TGG | - | chr7_3:2431995-2432014 | None:intergenic | 50.0% | |
| AAACCCATGACCAACGGCAA+CGG | + | chr7_3:2431302-2431321 | Msa1089100:CDS | 50.0% | |
| !! | AACGGTGTCACCAACGGTAA+CGG | + | chr7_3:2431320-2431339 | Msa1089100:CDS | 50.0% |
| ! | GTCACCAACGGTAACGGTAA+CGG | + | chr7_3:2431326-2431345 | Msa1089100:CDS | 50.0% |
| !! | TGGAAATGATGGGTTTGCGG+CGG | - | chr7_3:2431357-2431376 | None:intergenic | 50.0% |
| !! | GGCTGGAAATGATGGGTTTG+CGG | - | chr7_3:2431360-2431379 | None:intergenic | 50.0% |
| ! | AGAAGAAGGTGCAGCAGCAA+CGG | - | chr7_3:2431454-2431473 | None:intergenic | 50.0% |
| !!! | TTTTGAGTTGAGGGTGGAGG+AGG | - | chr7_3:2431612-2431631 | None:intergenic | 50.0% |
| !! | GGTGGTTGGTTGGTAAACGA+AGG | - | chr7_3:2431678-2431697 | None:intergenic | 50.0% |
| CATGTTCTTCTTCAGCTCCG+TGG | - | chr7_3:2431831-2431850 | None:intergenic | 50.0% | |
| TTCGAAGTTGACGCCGTTAC+TGG | - | chr7_3:2431995-2432014 | None:intergenic | 50.0% | |
| GTTGCCGTTGGTCATGGGTT+TGG | - | chr7_3:2431303-2431322 | None:intergenic | 55.0% | |
| ACACCGTTGCCGTTGGTCAT+GGG | - | chr7_3:2431308-2431327 | None:intergenic | 55.0% | |
| !! | AACGGCAACGGTGTCACCAA+CGG | + | chr7_3:2431314-2431333 | Msa1089100:CDS | 55.0% |
| GACACCGTTACCGTTACCGT+TGG | - | chr7_3:2431333-2431352 | None:intergenic | 55.0% | |
| GAGGTTGTGGACGGTAGGTA+GGG | - | chr7_3:2431412-2431431 | None:intergenic | 55.0% | |
| TGAGGTTGTGGACGGTAGGT+AGG | - | chr7_3:2431413-2431432 | None:intergenic | 55.0% | |
| GCTGCTGCACCTTCTTCTTC+TGG | + | chr7_3:2431456-2431475 | Msa1089100:CDS | 55.0% | |
| CTCATCCTCCTTCTCCTCCT+CGG | + | chr7_3:2431494-2431513 | Msa1089100:CDS | 55.0% | |
| TACGGTGAAGGAAGGACGGT+GGG | - | chr7_3:2431555-2431574 | None:intergenic | 55.0% | |
| TTACGGTGAAGGAAGGACGG+TGG | - | chr7_3:2431556-2431575 | None:intergenic | 55.0% | |
| GTTGCCGTTGGTCATGGGTT+TGG | - | chr7_3:2431303-2431322 | None:intergenic | 55.0% | |
| ACACCGTTGCCGTTGGTCAT+GGG | - | chr7_3:2431308-2431327 | None:intergenic | 55.0% | |
| !! | AACGGCAACGGTGTCACCAA+CGG | + | chr7_3:2431314-2431333 | Msa1089100:CDS | 55.0% |
| GACACCGTTACCGTTACCGT+TGG | - | chr7_3:2431333-2431352 | None:intergenic | 55.0% | |
| GAGGTTGTGGACGGTAGGTA+GGG | - | chr7_3:2431412-2431431 | None:intergenic | 55.0% | |
| TGAGGTTGTGGACGGTAGGT+AGG | - | chr7_3:2431413-2431432 | None:intergenic | 55.0% | |
| GCTGCTGCACCTTCTTCTTC+TGG | + | chr7_3:2431456-2431475 | Msa1089100:CDS | 55.0% | |
| CTCATCCTCCTTCTCCTCCT+CGG | + | chr7_3:2431494-2431513 | Msa1089100:CDS | 55.0% | |
| TACGGTGAAGGAAGGACGGT+GGG | - | chr7_3:2431555-2431574 | None:intergenic | 55.0% | |
| TTACGGTGAAGGAAGGACGG+TGG | - | chr7_3:2431556-2431575 | None:intergenic | 55.0% | |
| TTGGTCATGGGTTTGGCGGC+GGG | - | chr7_3:2431296-2431315 | None:intergenic | 60.0% | |
| GTTGGTCATGGGTTTGGCGG+CGG | - | chr7_3:2431297-2431316 | None:intergenic | 60.0% | |
| GCCGCCAAACCCATGACCAA+CGG | + | chr7_3:2431296-2431315 | Msa1089100:CDS | 60.0% | |
| GCCGTTGGTCATGGGTTTGG+CGG | - | chr7_3:2431300-2431319 | None:intergenic | 60.0% | |
| GACACCGTTGCCGTTGGTCA+TGG | - | chr7_3:2431309-2431328 | None:intergenic | 60.0% | |
| !! | GTTGGTGACACCGTTGCCGT+TGG | - | chr7_3:2431315-2431334 | None:intergenic | 60.0% |
| TTGTGGACGGTAGGTAGGGC+GGG | - | chr7_3:2431408-2431427 | None:intergenic | 60.0% | |
| GTTGTGGACGGTAGGTAGGG+CGG | - | chr7_3:2431409-2431428 | None:intergenic | 60.0% | |
| GTGGTGAGGTTGTGGACGGT+AGG | - | chr7_3:2431417-2431436 | None:intergenic | 60.0% | |
| ! | AGAAGGTGCAGCAGCAACGG+CGG | - | chr7_3:2431451-2431470 | None:intergenic | 60.0% |
| TTACGCCGAGGAGGAGAAGG+AGG | - | chr7_3:2431502-2431521 | None:intergenic | 60.0% | |
| CCTTCTCCTCCTCGGCGTAA+CGG | + | chr7_3:2431502-2431521 | Msa1089100:CDS | 60.0% | |
| CTTCTCCTCCTCGGCGTAAC+GGG | + | chr7_3:2431503-2431522 | Msa1089100:CDS | 60.0% | |
| TGAAGGAAGGACGGTGGGGA+CGG | - | chr7_3:2431550-2431569 | None:intergenic | 60.0% | |
| ACGGTGAAGGAAGGACGGTG+GGG | - | chr7_3:2431554-2431573 | None:intergenic | 60.0% | |
| GGAGGAGGTGAGGTTGAGGT+AGG | - | chr7_3:2431594-2431613 | None:intergenic | 60.0% | |
| TGGAGGAGGAGGTGAGGTTG+AGG | - | chr7_3:2431598-2431617 | None:intergenic | 60.0% | |
| ! | TGAGTTGAGGGTGGAGGAGG+AGG | - | chr7_3:2431609-2431628 | None:intergenic | 60.0% |
| TTGGTCATGGGTTTGGCGGC+GGG | - | chr7_3:2431296-2431315 | None:intergenic | 60.0% | |
| GTTGGTCATGGGTTTGGCGG+CGG | - | chr7_3:2431297-2431316 | None:intergenic | 60.0% | |
| GCCGCCAAACCCATGACCAA+CGG | + | chr7_3:2431296-2431315 | Msa1089100:CDS | 60.0% | |
| GCCGTTGGTCATGGGTTTGG+CGG | - | chr7_3:2431300-2431319 | None:intergenic | 60.0% | |
| GACACCGTTGCCGTTGGTCA+TGG | - | chr7_3:2431309-2431328 | None:intergenic | 60.0% | |
| !! | GTTGGTGACACCGTTGCCGT+TGG | - | chr7_3:2431315-2431334 | None:intergenic | 60.0% |
| TTGTGGACGGTAGGTAGGGC+GGG | - | chr7_3:2431408-2431427 | None:intergenic | 60.0% | |
| GTTGTGGACGGTAGGTAGGG+CGG | - | chr7_3:2431409-2431428 | None:intergenic | 60.0% | |
| GTGGTGAGGTTGTGGACGGT+AGG | - | chr7_3:2431417-2431436 | None:intergenic | 60.0% | |
| ! | AGAAGGTGCAGCAGCAACGG+CGG | - | chr7_3:2431451-2431470 | None:intergenic | 60.0% |
| TTACGCCGAGGAGGAGAAGG+AGG | - | chr7_3:2431502-2431521 | None:intergenic | 60.0% | |
| CCTTCTCCTCCTCGGCGTAA+CGG | + | chr7_3:2431502-2431521 | Msa1089100:CDS | 60.0% | |
| CTTCTCCTCCTCGGCGTAAC+GGG | + | chr7_3:2431503-2431522 | Msa1089100:CDS | 60.0% | |
| TGAAGGAAGGACGGTGGGGA+CGG | - | chr7_3:2431550-2431569 | None:intergenic | 60.0% | |
| ACGGTGAAGGAAGGACGGTG+GGG | - | chr7_3:2431554-2431573 | None:intergenic | 60.0% | |
| GGAGGAGGTGAGGTTGAGGT+AGG | - | chr7_3:2431594-2431613 | None:intergenic | 60.0% | |
| TGGAGGAGGAGGTGAGGTTG+AGG | - | chr7_3:2431598-2431617 | None:intergenic | 60.0% | |
| ! | TGAGTTGAGGGTGGAGGAGG+AGG | - | chr7_3:2431609-2431628 | None:intergenic | 60.0% |
| GGCGGTGGTGAGGTTGTGGA+CGG | - | chr7_3:2431421-2431440 | None:intergenic | 65.0% | |
| GTACGGCGGTGGTGAGGTTG+TGG | - | chr7_3:2431425-2431444 | None:intergenic | 65.0% | |
| CCGTTACGCCGAGGAGGAGA+AGG | - | chr7_3:2431505-2431524 | None:intergenic | 65.0% | |
| GACGGTGGGGACGGTAGATG+AGG | - | chr7_3:2431541-2431560 | None:intergenic | 65.0% | |
| TGAGGGTGGAGGAGGAGGTG+AGG | - | chr7_3:2431604-2431623 | None:intergenic | 65.0% | |
| GGCGGTGGTGAGGTTGTGGA+CGG | - | chr7_3:2431421-2431440 | None:intergenic | 65.0% | |
| GTACGGCGGTGGTGAGGTTG+TGG | - | chr7_3:2431425-2431444 | None:intergenic | 65.0% | |
| CCGTTACGCCGAGGAGGAGA+AGG | - | chr7_3:2431505-2431524 | None:intergenic | 65.0% | |
| GACGGTGGGGACGGTAGATG+AGG | - | chr7_3:2431541-2431560 | None:intergenic | 65.0% | |
| TGAGGGTGGAGGAGGAGGTG+AGG | - | chr7_3:2431604-2431623 | None:intergenic | 65.0% | |
| TGGACGGTAGGTAGGGCGGG+TGG | - | chr7_3:2431405-2431424 | None:intergenic | 70.0% | |
| AGCAGCAACGGCGGCGGGTA+CGG | - | chr7_3:2431442-2431461 | None:intergenic | 70.0% | |
| AGGTGCAGCAGCAACGGCGG+CGG | - | chr7_3:2431448-2431467 | None:intergenic | 70.0% | |
| AAGCGGTGCCCGTTACGCCG+AGG | - | chr7_3:2431514-2431533 | None:intergenic | 70.0% | |
| TGGACGGTAGGTAGGGCGGG+TGG | - | chr7_3:2431405-2431424 | None:intergenic | 70.0% | |
| AGCAGCAACGGCGGCGGGTA+CGG | - | chr7_3:2431442-2431461 | None:intergenic | 70.0% | |
| AGGTGCAGCAGCAACGGCGG+CGG | - | chr7_3:2431448-2431467 | None:intergenic | 70.0% | |
| AAGCGGTGCCCGTTACGCCG+AGG | - | chr7_3:2431514-2431533 | None:intergenic | 70.0% | |
| AGCAACGGCGGCGGGTACGG+CGG | - | chr7_3:2431439-2431458 | None:intergenic | 75.0% | |
| GGTGCAGCAGCAACGGCGGC+GGG | - | chr7_3:2431447-2431466 | None:intergenic | 75.0% | |
| CGGTGCCCGTTACGCCGAGG+AGG | - | chr7_3:2431511-2431530 | None:intergenic | 75.0% | |
| AGCAACGGCGGCGGGTACGG+CGG | - | chr7_3:2431439-2431458 | None:intergenic | 75.0% | |
| GGTGCAGCAGCAACGGCGGC+GGG | - | chr7_3:2431447-2431466 | None:intergenic | 75.0% | |
| CGGTGCCCGTTACGCCGAGG+AGG | - | chr7_3:2431511-2431530 | None:intergenic | 75.0% | |
| ! | CGGCGGGTACGGCGGTGGTG+AGG | - | chr7_3:2431431-2431450 | None:intergenic | 80.0% |
| ! | AACGGCGGCGGGTACGGCGG+TGG | - | chr7_3:2431436-2431455 | None:intergenic | 80.0% |
| ! | CGGCGGGTACGGCGGTGGTG+AGG | - | chr7_3:2431431-2431450 | None:intergenic | 80.0% |
| ! | AACGGCGGCGGGTACGGCGG+TGG | - | chr7_3:2431436-2431455 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 2431275 | 2432066 | 2431275 | ID=Msa1089100;Name=Msa1089100 |
| chr7_3 | mRNA | 2431275 | 2432066 | 2431275 | ID=Msa1089100-mRNA-1;Parent=Msa1089100;Name=Msa1089100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|263 |
| chr7_3 | exon | 2431275 | 2432066 | 2431275 | ID=Msa1089100-mRNA-1:exon:971;Parent=Msa1089100-mRNA-1 |
| chr7_3 | CDS | 2431275 | 2432066 | 2431275 | ID=Msa1089100-mRNA-1:cds;Parent=Msa1089100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
