Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442260 | XP_003598311.1 | 97.647 | 170 | 4 | 0 | 1 | 170 | 1 | 170 | 5.06e-119 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442260 | sp|Q9FKT1|LLG1_ARATH | 61.702 | 141 | 50 | 2 | 34 | 170 | 28 | 168 | 2.97e-59 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442260 | G7J0F7 | 97.647 | 170 | 4 | 0 | 1 | 170 | 1 | 170 | 2.42e-119 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0084870 | Msa0442260 | 0.801440 | 8.994122e-49 | -8.615850e-47 |
| Msa0137390 | Msa0442260 | 0.801945 | 7.084950e-49 | -8.615850e-47 |
| Msa0442260 | Msa0510120 | 0.807899 | 4.034701e-50 | -8.615850e-47 |
| Msa0442260 | Msa0575380 | 0.808513 | 2.984384e-50 | -8.615850e-47 |
| Msa0442260 | Msa0644830 | 0.805573 | 1.250874e-49 | -8.615850e-47 |
| Msa0442260 | Msa0684340 | 0.863469 | 2.435653e-64 | -8.615850e-47 |
| Msa0442260 | Msa0930210 | 0.811223 | 7.796961e-51 | -8.615850e-47 |
| Msa0442260 | Msa1089100 | 0.844853 | 5.846289e-59 | -8.615850e-47 |
| Msa0347660 | Msa0442260 | 0.999006 | 1.092855e-285 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442260 | MtrunA17_Chr3g0080031 | 97.647 | 170 | 4 | 0 | 1 | 170 | 1 | 170 | 4.66e-123 | 343 |
| Msa0442260 | MtrunA17_Chr6g0457591 | 50.610 | 164 | 77 | 2 | 9 | 170 | 3 | 164 | 8.89e-54 | 168 |
| Msa0442260 | MtrunA17_Chr6g0460101 | 54.887 | 133 | 59 | 1 | 2 | 134 | 25 | 156 | 1.16e-47 | 153 |
| Msa0442260 | MtrunA17_Chr6g0457601 | 58.678 | 121 | 49 | 1 | 14 | 134 | 17 | 136 | 5.50e-47 | 151 |
| Msa0442260 | MtrunA17_Chr6g0452621 | 58.140 | 129 | 49 | 3 | 9 | 134 | 3 | 129 | 1.44e-46 | 148 |
| Msa0442260 | MtrunA17_Chr6g0460111 | 47.692 | 65 | 34 | 0 | 106 | 170 | 1 | 65 | 1.56e-16 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0442260 | AT5G56170.1 | 61.702 | 141 | 50 | 2 | 34 | 170 | 28 | 168 | 3.02e-60 | 184 |
| Msa0442260 | AT4G26466.1 | 51.064 | 141 | 64 | 3 | 34 | 170 | 25 | 164 | 2.94e-48 | 154 |
| Msa0442260 | AT2G20700.1 | 54.478 | 134 | 61 | 0 | 37 | 170 | 27 | 160 | 9.38e-48 | 153 |
| Msa0442260 | AT4G28280.3 | 56.061 | 132 | 55 | 1 | 37 | 168 | 10 | 138 | 2.02e-46 | 149 |
| Msa0442260 | AT4G28280.2 | 56.061 | 132 | 55 | 1 | 37 | 168 | 31 | 159 | 3.20e-46 | 149 |
| Msa0442260 | AT4G28280.1 | 65.934 | 91 | 31 | 0 | 53 | 143 | 21 | 111 | 3.24e-41 | 135 |
Find 42 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGCTACATTAATCTTTA+TGG | 0.084552 | 3_3:-11729597 | Msa0442260:CDS |
| TTTGATGCTGAGACACTTAC+TGG | 0.273135 | 3_3:-11731336 | Msa0442260:CDS |
| TCATTTATCACATCAGTATA+AGG | 0.287486 | 3_3:+11729648 | None:intergenic |
| CTATACGGTAACTATATATA+AGG | 0.291152 | 3_3:+11729265 | None:intergenic |
| TTCTTCACTTCTTCTCATCA+TGG | 0.345119 | 3_3:-11731531 | Msa0442260:CDS |
| AAATGCTCCACAACATTCCT+TGG | 0.377041 | 3_3:+11729686 | None:intergenic |
| TTATTCAACAAATCTATAAC+TGG | 0.408997 | 3_3:-11731631 | Msa0442260:five_prime_UTR |
| GAGTTACTAGGAAGAAAAGT+TGG | 0.427866 | 3_3:+11731485 | None:intergenic |
| CATTCCTTGGGAGGGTACTT+AGG | 0.429542 | 3_3:+11729699 | None:intergenic |
| ATACAACATAGGTAACTATA+CGG | 0.442461 | 3_3:+11729250 | None:intergenic |
| TTAATCATCCATTCCTCAAA+AGG | 0.448455 | 3_3:-11731722 | Msa0442260:five_prime_UTR |
| AACTTAATATTTGACAATTG+AGG | 0.454715 | 3_3:-11731697 | Msa0442260:five_prime_UTR |
| AATGCTCCACAACATTCCTT+GGG | 0.478717 | 3_3:+11729687 | None:intergenic |
| CATTTATCACATCAGTATAA+GGG | 0.483862 | 3_3:+11729649 | None:intergenic |
| TATACGGTAACTATATATAA+GGG | 0.487341 | 3_3:+11729266 | None:intergenic |
| CACTCGCTCGCAAAGAGGCC+AGG | 0.497941 | 3_3:+11729564 | None:intergenic |
| CACGTTCGTTATTGTTGATG+CGG | 0.503903 | 3_3:-11729321 | Msa0442260:three_prime_UTR |
| CACGACACTCGCTCGCAAAG+AGG | 0.542743 | 3_3:+11729559 | None:intergenic |
| ACGTTCGTTATTGTTGATGC+GGG | 0.543625 | 3_3:-11729320 | Msa0442260:three_prime_UTR |
| ACATACTCCATCTCTAGTGC+TGG | 0.553326 | 3_3:-11729463 | Msa0442260:CDS |
| TATTAAAATTAAGAAGATGC+AGG | 0.556222 | 3_3:+11729431 | None:intergenic |
| CGCTCGCAAAGAGGCCAGGA+GGG | 0.563412 | 3_3:+11729568 | None:intergenic |
| GAGCGAGTGTCGTGAAGGGA+AGG | 0.564311 | 3_3:-11729550 | Msa0442260:CDS |
| GATTTGATTTGCAGTATCAT+CGG | 0.571086 | 3_3:+11729488 | None:intergenic |
| ACAACACTCAAATACAACAT+AGG | 0.579101 | 3_3:+11729239 | None:intergenic |
| GTGAGCACCAGCACTAGAGA+TGG | 0.582002 | 3_3:+11729456 | None:intergenic |
| GTATCATCGGCGGACACTGA+TGG | 0.584167 | 3_3:+11729501 | None:intergenic |
| CTTTATGGAAGATACCCTCC+TGG | 0.585291 | 3_3:-11729582 | Msa0442260:CDS |
| TACCCTCCCAAGGAATGTTG+TGG | 0.591187 | 3_3:-11729693 | Msa0442260:CDS |
| ACATCATAGAACAAACATCA+TGG | 0.591577 | 3_3:-11731588 | Msa0442260:exon |
| TTTGCGAGCGAGTGTCGTGA+AGG | 0.593755 | 3_3:-11729555 | Msa0442260:CDS |
| CTCCACAACATTCCTTGGGA+GGG | 0.609435 | 3_3:+11729691 | None:intergenic |
| TTGCGAGCGAGTGTCGTGAA+GGG | 0.616291 | 3_3:-11729554 | Msa0442260:CDS |
| GCTCCACAACATTCCTTGGG+AGG | 0.623412 | 3_3:+11729690 | None:intergenic |
| GAGTGTCGTGAAGGGAAGGA+AGG | 0.628790 | 3_3:-11729546 | Msa0442260:CDS |
| TCGCTCGCAAAGAGGCCAGG+AGG | 0.631835 | 3_3:+11729567 | None:intergenic |
| AAGATTAATGTAGCTAAACA+TGG | 0.635506 | 3_3:+11729602 | None:intergenic |
| ATAATCACAAGCAAATGCAA+AGG | 0.641999 | 3_3:-11729723 | Msa0442260:CDS |
| AATGTAGCTAAACATGGTTG+AGG | 0.646232 | 3_3:+11729608 | None:intergenic |
| TCATCGGCGGACACTGATGG+TGG | 0.646590 | 3_3:+11729504 | None:intergenic |
| AGGACCTAAGTACCCTCCCA+AGG | 0.651427 | 3_3:-11729703 | Msa0442260:CDS |
| TTGATTTGCAGTATCATCGG+CGG | 0.696584 | 3_3:+11729491 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTCAAATTTTTATATC+TGG | - | chr3_3:11729574-11729593 | Msa0442260:CDS | 15.0% |
| !!! | AAGTTCAAATTTTTATATCT+GGG | - | chr3_3:11729575-11729594 | Msa0442260:CDS | 15.0% |
| !! | TAAATTGAAAACAACTTAAT+GGG | + | chr3_3:11730229-11730248 | None:intergenic | 15.0% |
| !! | ATAAATTGAAAACAACTTAA+TGG | + | chr3_3:11730230-11730249 | None:intergenic | 15.0% |
| !! | AAAAAAGAGAAAAAAGAATT+AGG | - | chr3_3:11730700-11730719 | Msa0442260:intron | 15.0% |
| !!! | AGTAATATTTTATGTAGAAT+AGG | - | chr3_3:11731794-11731813 | Msa0442260:five_prime_UTR | 15.0% |
| !!! | TTTTTCTTGTCTTTGAAAAA+TGG | + | chr3_3:11729188-11729207 | None:intergenic | 20.0% |
| !!! | AATATTAAGTTTTCCTTTTG+AGG | + | chr3_3:11729257-11729276 | None:intergenic | 20.0% |
| !! | AACTTAATATTTGACAATTG+AGG | - | chr3_3:11729266-11729285 | Msa0442260:three_prime_UTR | 20.0% |
| !! | TTATTCAACAAATCTATAAC+TGG | - | chr3_3:11729332-11729351 | Msa0442260:three_prime_UTR | 20.0% |
| !! | ATTATTATTGTTTGTAGTTG+TGG | - | chr3_3:11729852-11729871 | Msa0442260:intron | 20.0% |
| !! | TATTTCAGTTATCTATGTTT+AGG | - | chr3_3:11730772-11730791 | Msa0442260:intron | 20.0% |
| !! | TTATTGTATAATACATGTAC+TGG | - | chr3_3:11731101-11731120 | Msa0442260:intron | 20.0% |
| !! | TTTAGCTACATTAATCTTTA+TGG | - | chr3_3:11731366-11731385 | Msa0442260:intron | 20.0% |
| !! | TATTAAAATTAAGAAGATGC+AGG | + | chr3_3:11731535-11731554 | None:intergenic | 20.0% |
| !! | TATACGGTAACTATATATAA+GGG | + | chr3_3:11731700-11731719 | None:intergenic | 20.0% |
| !!! | TCTTTTTTCTTCTATGCTTT+TGG | - | chr3_3:11729693-11729712 | Msa0442260:CDS | 25.0% |
| !! | AGTTTTTCCAATATTTGAAG+TGG | - | chr3_3:11729967-11729986 | Msa0442260:intron | 25.0% |
| !!! | GTTTTTCCAATATTTGAAGT+GGG | - | chr3_3:11729968-11729987 | Msa0442260:intron | 25.0% |
| !! | GATTTGAAGTCACATAAAAA+TGG | + | chr3_3:11730039-11730058 | None:intergenic | 25.0% |
| ! | TTTATGTGACTTCAAATCTT+TGG | - | chr3_3:11730041-11730060 | Msa0442260:intron | 25.0% |
| ! | TAGGATCAAAATGATAACTT+AGG | - | chr3_3:11730123-11730142 | Msa0442260:intron | 25.0% |
| ! | AGGATCAAAATGATAACTTA+GGG | - | chr3_3:11730124-11730143 | Msa0442260:intron | 25.0% |
| ! | AGATTGTTTGAGAGAATATA+TGG | - | chr3_3:11730186-11730205 | Msa0442260:intron | 25.0% |
| ! | TATTTCCATAAGCTCTATAT+AGG | - | chr3_3:11730247-11730266 | Msa0442260:intron | 25.0% |
| ! | TTACACACATACATTAGTAT+TGG | - | chr3_3:11730401-11730420 | Msa0442260:intron | 25.0% |
| ! | TACACACATACATTAGTATT+GGG | - | chr3_3:11730402-11730421 | Msa0442260:intron | 25.0% |
| ! | TGATAATTCAACAAGATACA+TGG | + | chr3_3:11730503-11730522 | None:intergenic | 25.0% |
| ! | TACACACTATAGTATTTATG+TGG | + | chr3_3:11730656-11730675 | None:intergenic | 25.0% |
| ! | ATACTATAGTGTGTAGAATT+TGG | - | chr3_3:11730661-11730680 | Msa0442260:intron | 25.0% |
| ! | CATTTATCACATCAGTATAA+GGG | + | chr3_3:11731317-11731336 | None:intergenic | 25.0% |
| ! | TCATTTATCACATCAGTATA+AGG | + | chr3_3:11731318-11731337 | None:intergenic | 25.0% |
| ! | AAGATTAATGTAGCTAAACA+TGG | + | chr3_3:11731364-11731383 | None:intergenic | 25.0% |
| ! | CTATACGGTAACTATATATA+AGG | + | chr3_3:11731701-11731720 | None:intergenic | 25.0% |
| ! | ATACAACATAGGTAACTATA+CGG | + | chr3_3:11731716-11731735 | None:intergenic | 25.0% |
| TTAATCATCCATTCCTCAAA+AGG | - | chr3_3:11729241-11729260 | Msa0442260:three_prime_UTR | 30.0% | |
| !! | TAAGTTTTCCTTTTGAGGAA+TGG | + | chr3_3:11729252-11729271 | None:intergenic | 30.0% |
| ! | GTTTGTTCTATGATGTTTTG+TGG | + | chr3_3:11729371-11729390 | None:intergenic | 30.0% |
| ACATCATAGAACAAACATCA+TGG | - | chr3_3:11729375-11729394 | Msa0442260:three_prime_UTR | 30.0% | |
| AAAAAGTTGTGAAGTGAAGA+AGG | + | chr3_3:11729510-11729529 | None:intergenic | 30.0% | |
| !!! | CTTTTTTAGCTTGAAGAAGA+TGG | + | chr3_3:11729656-11729675 | None:intergenic | 30.0% |
| CATCTTCTTCAAGCTAAAAA+AGG | - | chr3_3:11729654-11729673 | Msa0442260:CDS | 30.0% | |
| TTTAGTCCCACTTCAAATAT+TGG | + | chr3_3:11729977-11729996 | None:intergenic | 30.0% | |
| ! | TATTTGAAGTGGGACTAAAA+TGG | - | chr3_3:11729978-11729997 | Msa0442260:intron | 30.0% |
| TGATCTCACATAAAGCTTAA+TGG | + | chr3_3:11730009-11730028 | None:intergenic | 30.0% | |
| TGACTTCAAATCTTTGGATT+TGG | - | chr3_3:11730047-11730066 | Msa0442260:intron | 30.0% | |
| CTATACTTTAGACCTCAATT+TGG | + | chr3_3:11730106-11730125 | None:intergenic | 30.0% | |
| ! | CAAATTGAGGTCTAAAGTAT+AGG | - | chr3_3:11730104-11730123 | Msa0442260:intron | 30.0% |
| ATGATAACTTAGGGCTTATT+TGG | - | chr3_3:11730133-11730152 | Msa0442260:intron | 30.0% | |
| TGATAACTTAGGGCTTATTT+GGG | - | chr3_3:11730134-11730153 | Msa0442260:intron | 30.0% | |
| ACACACATACATTAGTATTG+GGG | - | chr3_3:11730403-11730422 | Msa0442260:intron | 30.0% | |
| ! | ACAGCAATTTTTCCAGAATT+TGG | + | chr3_3:11730453-11730472 | None:intergenic | 30.0% |
| GATAAAATATACCGTCTTTG+TGG | - | chr3_3:11730474-11730493 | Msa0442260:intron | 30.0% | |
| GATCTAATCATGTTCAAAGT+TGG | + | chr3_3:11730571-11730590 | None:intergenic | 30.0% | |
| TGATTAGATCTTCGTATTCT+TGG | - | chr3_3:11730581-11730600 | Msa0442260:intron | 30.0% | |
| AACAGCTATTATCTAGAGAA+CGG | + | chr3_3:11730609-11730628 | None:intergenic | 30.0% | |
| ! | AGAATTAGGCTCTTTCTTTT+TGG | - | chr3_3:11730714-11730733 | Msa0442260:intron | 30.0% |
| ATTCATTACTGAACTCATGT+AGG | - | chr3_3:11730809-11730828 | Msa0442260:intron | 30.0% | |
| ACTACAATGCTATAACATAG+TGG | - | chr3_3:11730897-11730916 | Msa0442260:intron | 30.0% | |
| ATAATCACAAGCAAATGCAA+AGG | - | chr3_3:11731240-11731259 | Msa0442260:intron | 30.0% | |
| !! | GATTTGATTTGCAGTATCAT+CGG | + | chr3_3:11731478-11731497 | None:intergenic | 30.0% |
| ACAACACTCAAATACAACAT+AGG | + | chr3_3:11731727-11731746 | None:intergenic | 30.0% | |
| !! | TTAGAGATTGCAAGTTTTGT+TGG | - | chr3_3:11731747-11731766 | Msa0442260:five_prime_UTR | 30.0% |
| !!! | AGTTTTGTTGAGAAGAAGCT+TGG | + | chr3_3:11729212-11729231 | None:intergenic | 35.0% |
| TTCTTCACTTCTTCTCATCA+TGG | - | chr3_3:11729432-11729451 | Msa0442260:CDS | 35.0% | |
| GAGTTACTAGGAAGAAAAGT+TGG | + | chr3_3:11729481-11729500 | None:intergenic | 35.0% | |
| AGAAGGAAAAGAGAGTTACT+AGG | + | chr3_3:11729493-11729512 | None:intergenic | 35.0% | |
| !!! | AATTTTGAAGCGCCAAATTG+AGG | - | chr3_3:11730091-11730110 | Msa0442260:intron | 35.0% |
| GCTATCCTATATAGAGCTTA+TGG | + | chr3_3:11730255-11730274 | None:intergenic | 35.0% | |
| ACTAATGTATGTGTGTAACC+TGG | + | chr3_3:11730399-11730418 | None:intergenic | 35.0% | |
| ! | ACATACATTAGTATTGGGGA+TGG | - | chr3_3:11730407-11730426 | Msa0442260:intron | 35.0% |
| !! | GATGGACTAATAGAGAAGTA+TGG | - | chr3_3:11730425-11730444 | Msa0442260:intron | 35.0% |
| ATAGCTGTTTGAGAAAGATC+TGG | - | chr3_3:11730620-11730639 | Msa0442260:intron | 35.0% | |
| TTGCATTGAATCAATGCAAC+TGG | + | chr3_3:11730743-11730762 | None:intergenic | 35.0% | |
| TACACCATGTTGTCAAATAC+AGG | - | chr3_3:11730961-11730980 | Msa0442260:intron | 35.0% | |
| ACAACCTGTATTTGACAACA+TGG | + | chr3_3:11730968-11730987 | None:intergenic | 35.0% | |
| TTGTCAAATACAGGTTGTAG+CGG | - | chr3_3:11730970-11730989 | Msa0442260:intron | 35.0% | |
| !!! | ACGTTATTTTTCACAATCCG+CGG | - | chr3_3:11731030-11731049 | Msa0442260:intron | 35.0% |
| ! | ACTGATCTATAGCAGAGTTT+TGG | - | chr3_3:11731061-11731080 | Msa0442260:intron | 35.0% |
| AATGTAGCTAAACATGGTTG+AGG | + | chr3_3:11731358-11731377 | None:intergenic | 35.0% | |
| TTTGATGCTGAGACACTTAC+TGG | - | chr3_3:11729627-11729646 | Msa0442260:CDS | 40.0% | |
| AAGTTTATCGAAACACAGCC+AGG | - | chr3_3:11730378-11730397 | Msa0442260:intron | 40.0% | |
| ! | AGAAGTATGGCTCCAAATTC+TGG | - | chr3_3:11730438-11730457 | Msa0442260:intron | 40.0% |
| ATACATGGAAGCCACAAAGA+CGG | + | chr3_3:11730488-11730507 | None:intergenic | 40.0% | |
| TGTCAAATACAGGTTGTAGC+GGG | - | chr3_3:11730971-11730990 | Msa0442260:intron | 40.0% | |
| !!! | ATAGCAGAGTTTTGGTTGTG+TGG | - | chr3_3:11731069-11731088 | Msa0442260:intron | 40.0% |
| ! | ATCAGCAAACGCTTCTCTTT+TGG | + | chr3_3:11731159-11731178 | None:intergenic | 40.0% |
| AATGCTCCACAACATTCCTT+GGG | + | chr3_3:11731279-11731298 | None:intergenic | 40.0% | |
| AAATGCTCCACAACATTCCT+TGG | + | chr3_3:11731280-11731299 | None:intergenic | 40.0% | |
| !! | TTGATTTGCAGTATCATCGG+CGG | + | chr3_3:11731475-11731494 | None:intergenic | 40.0% |
| CACGTTCGTTATTGTTGATG+CGG | - | chr3_3:11731642-11731661 | Msa0442260:five_prime_UTR | 40.0% | |
| ACGTTCGTTATTGTTGATGC+GGG | - | chr3_3:11731643-11731662 | Msa0442260:five_prime_UTR | 40.0% | |
| ACTATGACACTGTTGCGTAG+CGG | - | chr3_3:11730995-11731014 | Msa0442260:intron | 45.0% | |
| ! | TTTTCACAATCCGCGGTTGA+CGG | - | chr3_3:11731037-11731056 | Msa0442260:intron | 45.0% |
| TTGTTTCACATTGCACCTGC+AGG | - | chr3_3:11731183-11731202 | Msa0442260:intron | 45.0% | |
| AAATTCACAGAACAGCCTGC+AGG | + | chr3_3:11731201-11731220 | None:intergenic | 45.0% | |
| CTTTATGGAAGATACCCTCC+TGG | - | chr3_3:11731381-11731400 | Msa0442260:intron | 45.0% | |
| ACATACTCCATCTCTAGTGC+TGG | - | chr3_3:11731500-11731519 | Msa0442260:CDS | 45.0% | |
| ! | GTGTTGTTACATAGCCGCTG+TGG | - | chr3_3:11730870-11730889 | Msa0442260:intron | 50.0% |
| !! | CATTCCTTGGGAGGGTACTT+AGG | + | chr3_3:11731267-11731286 | None:intergenic | 50.0% |
| TACCCTCCCAAGGAATGTTG+TGG | - | chr3_3:11731270-11731289 | Msa0442260:intron | 50.0% | |
| CTCCACAACATTCCTTGGGA+GGG | + | chr3_3:11731275-11731294 | None:intergenic | 50.0% | |
| GCATTGTAGTGCTGCCACAG+CGG | + | chr3_3:11730887-11730906 | None:intergenic | 55.0% | |
| TAGATCAGTGCCGTCAACCG+CGG | + | chr3_3:11731050-11731069 | None:intergenic | 55.0% | |
| AGGACCTAAGTACCCTCCCA+AGG | - | chr3_3:11731260-11731279 | Msa0442260:intron | 55.0% | |
| GCTCCACAACATTCCTTGGG+AGG | + | chr3_3:11731276-11731295 | None:intergenic | 55.0% | |
| ! | TTTGCGAGCGAGTGTCGTGA+AGG | - | chr3_3:11731408-11731427 | Msa0442260:intron | 55.0% |
| ! | TTGCGAGCGAGTGTCGTGAA+GGG | - | chr3_3:11731409-11731428 | Msa0442260:intron | 55.0% |
| ! | GAGTGTCGTGAAGGGAAGGA+AGG | - | chr3_3:11731417-11731436 | Msa0442260:intron | 55.0% |
| GTATCATCGGCGGACACTGA+TGG | + | chr3_3:11731465-11731484 | None:intergenic | 55.0% | |
| GTGAGCACCAGCACTAGAGA+TGG | + | chr3_3:11731510-11731529 | None:intergenic | 55.0% | |
| CACGACACTCGCTCGCAAAG+AGG | + | chr3_3:11731407-11731426 | None:intergenic | 60.0% | |
| ! | GAGCGAGTGTCGTGAAGGGA+AGG | - | chr3_3:11731413-11731432 | Msa0442260:intron | 60.0% |
| TCATCGGCGGACACTGATGG+TGG | + | chr3_3:11731462-11731481 | None:intergenic | 60.0% | |
| CGCTCGCAAAGAGGCCAGGA+GGG | + | chr3_3:11731398-11731417 | None:intergenic | 65.0% | |
| TCGCTCGCAAAGAGGCCAGG+AGG | + | chr3_3:11731399-11731418 | None:intergenic | 65.0% | |
| CACTCGCTCGCAAAGAGGCC+AGG | + | chr3_3:11731402-11731421 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 11729168 | 11731817 | 11729168 | ID=Msa0442260;Name=Msa0442260 |
| chr3_3 | mRNA | 11729168 | 11731817 | 11729168 | ID=Msa0442260-mRNA-1;Parent=Msa0442260;Name=Msa0442260-mRNA-1;_AED=0.03;_eAED=0.03;_QI=226|1|1|1|1|1|3|257|170 |
| chr3_3 | exon | 11729168 | 11729780 | 11729168 | ID=Msa0442260-mRNA-1:exon:2491;Parent=Msa0442260-mRNA-1 |
| chr3_3 | exon | 11731310 | 11731366 | 11731310 | ID=Msa0442260-mRNA-1:exon:2490;Parent=Msa0442260-mRNA-1 |
| chr3_3 | exon | 11731492 | 11731817 | 11731492 | ID=Msa0442260-mRNA-1:exon:2489;Parent=Msa0442260-mRNA-1 |
| chr3_3 | five_prime_UTR | 11731592 | 11731817 | 11731592 | ID=Msa0442260-mRNA-1:five_prime_utr;Parent=Msa0442260-mRNA-1 |
| chr3_3 | CDS | 11731492 | 11731591 | 11731492 | ID=Msa0442260-mRNA-1:cds;Parent=Msa0442260-mRNA-1 |
| chr3_3 | CDS | 11731310 | 11731366 | 11731310 | ID=Msa0442260-mRNA-1:cds;Parent=Msa0442260-mRNA-1 |
| chr3_3 | CDS | 11729425 | 11729780 | 11729425 | ID=Msa0442260-mRNA-1:cds;Parent=Msa0442260-mRNA-1 |
| chr3_3 | three_prime_UTR | 11729168 | 11729424 | 11729168 | ID=Msa0442260-mRNA-1:three_prime_utr;Parent=Msa0442260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
