AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0404070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404070 MtrunA17_Chr1g0193491 97.069 580 10 3 1 579 27 600 0.0 1127
Msa0404070 MtrunA17_Chr7g0271121 71.812 447 110 3 50 484 56 498 0.0 627
Msa0404070 MtrunA17_Chr5g0442191 61.892 370 139 1 91 460 80 447 3.33e-163 480
Msa0404070 MtrunA17_Chr3g0095031 60.647 371 144 1 91 461 89 457 4.39e-159 468
Msa0404070 MtrunA17_Chr1g0204391 42.298 409 209 7 93 478 45 449 1.87e-94 302
Msa0404070 MtrunA17_Chr6g0475251 44.837 368 192 6 106 466 117 480 3.08e-93 301
Msa0404070 MtrunA17_Chr6g0449911 40.230 348 200 6 97 441 170 512 9.57e-77 259
Msa0404070 MtrunA17_Chr2g0330401 37.566 378 226 6 86 457 90 463 6.27e-75 248
Msa0404070 MtrunA17_Chr2g0293631 39.143 350 203 3 97 442 501 844 4.05e-74 258
Msa0404070 MtrunA17_Chr1g0176041 35.181 469 261 13 61 507 123 570 3.79e-72 244
Msa0404070 MtrunA17_Chr3g0121351 36.659 431 225 13 59 456 111 526 5.93e-70 238
Msa0404070 MtrunA17_Chr3g0107851 40.950 337 184 6 117 442 142 474 3.62e-68 232
Msa0404070 MtrunA17_Chr4g0063551 39.227 362 196 8 102 443 150 507 3.97e-68 234
Msa0404070 MtrunA17_Chr7g0236841 36.885 366 218 6 96 457 14 370 3.56e-67 226
Msa0404070 MtrunA17_Chr5g0409981 37.360 356 214 6 97 446 109 461 7.82e-67 227
Msa0404070 MtrunA17_Chr6g0483491 36.339 366 220 6 96 457 14 370 2.37e-66 224
Msa0404070 MtrunA17_Chr4g0076491 38.082 365 199 5 100 442 295 654 6.07e-66 229
Msa0404070 MtrunA17_Chr6g0449741 37.912 364 199 5 100 442 257 614 7.53e-66 228
Msa0404070 MtrunA17_Chr2g0299681 35.772 369 210 8 96 454 45 396 4.87e-63 214
Msa0404070 MtrunA17_Chr7g0270131 38.268 358 209 6 96 447 236 587 5.20e-63 222
Msa0404070 MtrunA17_Chr1g0200181 35.165 364 219 5 98 450 151 508 4.14e-62 216
Msa0404070 MtrunA17_Chr1g0157691 34.615 364 221 5 98 450 153 510 1.90e-60 212
Msa0404070 MtrunA17_Chr2g0297261 34.000 350 214 6 94 438 36 373 2.96e-60 206
Msa0404070 MtrunA17_Chr4g0070981 35.694 353 200 8 96 438 45 380 3.35e-60 206
Msa0404070 MtrunA17_Chr2g0277821 33.187 455 285 10 94 538 506 951 5.74e-60 217
Msa0404070 MtrunA17_Chr2g0329931 34.324 370 214 9 96 454 45 396 8.33e-60 205
Msa0404070 MtrunA17_Chr8g0342861 33.676 389 224 10 96 471 45 412 4.34e-59 203
Msa0404070 MtrunA17_Chr3g0098121 35.849 371 221 8 95 457 155 516 2.65e-57 206
Msa0404070 MtrunA17_Chr7g0247191 33.243 370 228 7 101 465 159 514 8.60e-56 197
Msa0404070 MtrunA17_Chr2g0300291 36.119 371 221 9 95 457 144 506 8.63e-56 202
Msa0404070 MtrunA17_Chr7g0247181 32.703 370 230 7 101 465 149 504 8.10e-55 194
Msa0404070 MtrunA17_Chr7g0247221 32.703 370 230 7 101 465 152 507 1.03e-54 194
Msa0404070 MtrunA17_Chr4g0058591 36.808 307 187 4 98 401 208 510 1.83e-54 194
Msa0404070 MtrunA17_Chr4g0003441 30.874 366 224 10 117 473 133 478 5.70e-52 186
Msa0404070 MtrunA17_Chr4g0040761 33.144 353 223 6 96 443 23 367 8.06e-52 191
Msa0404070 MtrunA17_Chr1g0149251 30.816 331 207 8 130 451 2 319 3.21e-50 177
Msa0404070 MtrunA17_Chr7g0236831 31.742 419 213 11 94 442 165 580 1.13e-48 182
Msa0404070 MtrunA17_Chr8g0386451 34.174 357 209 9 103 440 299 648 1.83e-48 181
Msa0404070 MtrunA17_Chr4g0062301 33.533 334 207 8 110 435 115 441 1.01e-47 176
Msa0404070 MtrunA17_Chr2g0307471 32.493 357 225 7 93 440 92 441 2.75e-47 175
Msa0404070 MtrunA17_Chr8g0347161 32.362 343 220 6 110 440 120 462 3.44e-47 175
Msa0404070 MtrunA17_Chr8g0347151 33.333 345 214 8 110 440 219 561 6.00e-47 176
Msa0404070 MtrunA17_Chr6g0461751 29.839 372 250 8 81 446 129 495 2.32e-46 172
Msa0404070 MtrunA17_Chr2g0310581 32.105 380 240 6 93 464 54 423 4.50e-46 171
Msa0404070 MtrunA17_Chr1g0192021 29.777 403 227 8 95 448 29 424 1.95e-45 170
Msa0404070 MtrunA17_Chr3g0114081 32.075 371 206 11 116 454 40 396 4.64e-45 169
Msa0404070 MtrunA17_Chr7g0263771 31.268 355 215 9 99 442 140 476 1.76e-44 168
Msa0404070 MtrunA17_Chr8g0347171 32.184 348 214 7 110 440 178 520 9.06e-44 166
Msa0404070 MtrunA17_Chr6g0466611 27.789 511 306 14 96 550 146 649 8.80e-43 164
Msa0404070 MtrunA17_Chr5g0443991 32.938 337 212 7 117 445 101 431 4.62e-41 159
Msa0404070 MtrunA17_Chr2g0309551 26.450 431 246 10 94 460 111 534 1.54e-38 150
Msa0404070 MtrunA17_Chr4g0029191 28.505 428 228 12 93 445 45 469 6.05e-38 149
Msa0404070 MtrunA17_Chr5g0429221 29.870 385 252 11 93 471 4 376 1.22e-37 144
Msa0404070 MtrunA17_Chr4g0034411 30.670 388 230 13 84 453 72 438 5.20e-37 147
Msa0404070 MtrunA17_Chr2g0301281 28.375 437 237 12 93 455 42 476 7.05e-37 145
Msa0404070 MtrunA17_Chr4g0004301 29.032 434 213 14 101 457 38 453 2.49e-36 142
Msa0404070 MtrunA17_Chr5g0434301 29.032 434 213 14 101 457 38 453 1.16e-35 140
Msa0404070 MtrunA17_Chr1g0179761 29.067 375 218 14 129 470 120 479 1.31e-33 134
Msa0404070 MtrunA17_Chr1g0169331 30.263 380 200 15 117 450 16 376 7.95e-32 127
Msa0404070 MtrunA17_Chr3g0145781 28.822 399 230 15 96 456 136 518 7.99e-32 130
Msa0404070 MtrunA17_Chr8g0342851 27.893 337 194 11 121 449 2 297 3.23e-27 112
Msa0404070 MtrunA17_Chr4g0062321 30.085 236 154 6 176 406 4 233 1.87e-25 105
Msa0404070 MtrunA17_Chr4g0039471 35.610 205 119 3 89 288 220 416 3.59e-25 108
Msa0404070 MtrunA17_Chr3g0137891 31.250 176 102 5 130 297 2 166 3.67e-22 95.9
Msa0404070 MtrunA17_Chr1g0155201 27.815 302 190 9 206 503 2 279 7.63e-22 97.4
Msa0404070 MtrunA17_Chr8g0354761 25.419 358 228 11 117 454 33 371 1.33e-21 98.2
Msa0404070 MtrunA17_Chr3g0137901 30.899 178 113 5 298 473 1 170 3.85e-20 88.6
Msa0404070 MtrunA17_Chr4g0074521 26.076 395 250 12 99 459 89 475 1.34e-18 89.4
Msa0404070 MtrunA17_Chr4g0025141 28.638 213 138 5 272 470 15 227 6.28e-18 83.6
Msa0404070 MtrunA17_Chr8g0349951 33.553 152 91 4 96 244 14 158 3.86e-17 79.3
Msa0404070 MtrunA17_Chr3g0108851 24.928 349 225 11 110 444 13 338 9.94e-17 84.3
Msa0404070 MtrunA17_Chr4g0025131 32.090 134 67 4 129 253 96 214 1.31e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0404070 AT5G26742.1 67.665 501 141 6 1 484 1 497 0.0 649
Msa0404070 AT5G26742.2 67.665 501 141 6 1 484 1 497 0.0 649
Msa0404070 AT5G26742.3 79.076 368 75 1 119 484 37 404 0.0 598
Msa0404070 AT3G22330.1 58.418 392 161 1 69 460 82 471 2.79e-158 468
Msa0404070 AT3G22310.2 58.919 370 150 1 91 460 116 483 2.10e-155 460
Msa0404070 AT5G62190.1 45.932 381 195 6 93 466 98 474 1.52e-97 313
Msa0404070 AT3G01540.4 40.000 355 203 5 91 441 158 506 4.68e-79 263
Msa0404070 AT3G01540.2 40.000 355 203 5 91 441 158 506 4.68e-79 263
Msa0404070 AT3G01540.3 40.000 355 203 5 91 441 158 506 4.68e-79 263
Msa0404070 AT3G01540.1 40.000 355 203 5 91 441 158 506 4.77e-79 263
Msa0404070 AT1G55150.1 39.437 355 208 5 96 447 104 454 2.23e-76 253
Msa0404070 AT1G55150.2 39.437 355 208 5 96 447 129 479 1.09e-75 251
Msa0404070 AT5G14610.6 38.701 354 209 5 91 441 161 509 5.70e-75 253
Msa0404070 AT5G14610.2 38.701 354 209 5 91 441 161 509 6.26e-75 253
Msa0404070 AT5G14610.5 38.701 354 209 5 91 441 169 517 8.11e-75 252
Msa0404070 AT5G14610.7 39.542 349 200 6 96 441 38 378 1.68e-73 245
Msa0404070 AT5G14610.3 39.542 349 200 6 96 441 38 378 1.68e-73 245
Msa0404070 AT5G14610.1 36.301 438 249 8 18 441 156 577 2.93e-73 249
Msa0404070 AT3G06480.1 39.368 348 205 3 97 442 441 784 8.64e-71 248
Msa0404070 AT5G63120.2 35.128 390 228 6 84 456 144 525 6.73e-70 238
Msa0404070 AT2G42520.2 37.563 394 209 11 105 477 173 550 2.40e-68 234
Msa0404070 AT2G42520.1 37.563 394 209 11 105 477 173 550 2.40e-68 234
Msa0404070 AT2G42520.3 37.563 394 209 11 105 477 173 550 2.40e-68 234
Msa0404070 AT1G31970.1 39.888 356 204 8 98 446 123 475 2.10e-67 229
Msa0404070 AT3G58510.1 35.589 399 236 9 59 441 119 512 1.76e-66 229
Msa0404070 AT3G58510.3 35.589 399 236 9 59 441 119 512 1.76e-66 229
Msa0404070 AT3G58510.2 35.589 399 236 9 59 441 119 512 1.76e-66 229
Msa0404070 AT3G58570.1 38.701 354 196 8 105 441 160 509 2.68e-66 229
Msa0404070 AT2G33730.1 38.525 366 196 6 100 442 322 681 9.57e-66 229
Msa0404070 AT5G51280.1 35.792 366 218 5 96 450 151 510 1.14e-64 224
Msa0404070 AT2G47330.1 39.944 358 203 8 96 447 233 584 1.68e-64 226
Msa0404070 AT1G20920.2 37.714 350 203 7 97 438 197 539 2.95e-63 224
Msa0404070 AT5G14610.4 38.209 335 194 7 97 428 175 499 5.30e-63 217
Msa0404070 AT5G60990.1 35.925 373 228 6 93 457 11 380 8.82e-63 215
Msa0404070 AT1G20920.4 36.932 352 211 6 97 442 535 881 7.04e-62 223
Msa0404070 AT1G20920.6 36.932 352 211 6 97 442 535 881 7.04e-62 223
Msa0404070 AT1G20920.3 36.932 352 211 6 97 442 535 881 7.04e-62 223
Msa0404070 AT1G20920.7 36.932 352 211 6 97 442 535 881 7.04e-62 223
Msa0404070 AT1G20920.5 36.932 352 211 6 97 442 535 881 7.04e-62 223
Msa0404070 AT1G20920.1 36.932 352 211 6 97 442 535 881 7.04e-62 223
Msa0404070 AT4G33370.1 35.772 369 217 6 88 445 97 456 9.51e-62 214
Msa0404070 AT1G72730.1 36.441 354 200 8 110 454 60 397 1.15e-61 211
Msa0404070 AT3G19760.1 33.908 348 213 6 96 438 40 375 1.18e-60 208
Msa0404070 AT1G51380.1 33.871 372 219 9 96 457 27 381 4.72e-60 206
Msa0404070 AT3G13920.4 35.112 356 204 8 109 454 52 390 8.63e-60 206
Msa0404070 AT3G13920.3 34.146 369 216 8 96 454 34 385 8.69e-60 205
Msa0404070 AT3G13920.1 34.146 369 216 8 96 454 44 395 1.19e-59 205
Msa0404070 AT3G13920.5 34.048 373 219 8 96 458 48 403 2.96e-59 204
Msa0404070 AT3G06480.2 37.658 316 191 3 97 410 441 752 3.37e-59 212
Msa0404070 AT3G13920.2 34.048 373 219 8 96 458 44 399 3.39e-59 204
Msa0404070 AT1G54270.2 34.551 356 206 8 109 454 52 390 3.23e-58 201
Msa0404070 AT1G54270.1 33.604 369 218 8 96 454 44 395 5.31e-58 201
Msa0404070 AT1G28180.1 36.923 325 196 4 126 446 8 327 1.14e-57 199
Msa0404070 AT4G16630.1 36.388 371 219 7 95 457 171 532 1.32e-57 208
Msa0404070 AT3G09620.2 35.613 351 188 6 97 442 403 720 2.95e-57 209
Msa0404070 AT3G09620.1 35.613 351 188 6 97 442 402 719 3.20e-57 209
Msa0404070 AT3G61240.2 33.518 361 221 7 102 457 135 481 6.16e-56 197
Msa0404070 AT3G61240.1 33.518 361 221 7 102 457 135 481 6.16e-56 197
Msa0404070 AT5G63120.3 35.191 341 200 5 84 407 144 480 1.12e-55 196
Msa0404070 AT5G63120.4 35.191 341 200 5 84 407 144 480 1.12e-55 196
Msa0404070 AT5G63120.5 35.191 341 200 5 84 407 144 480 1.12e-55 196
Msa0404070 AT4G00660.1 32.973 370 229 7 101 465 141 496 1.78e-55 197
Msa0404070 AT4G00660.2 32.973 370 229 7 101 465 141 496 1.78e-55 197
Msa0404070 AT5G63120.1 35.224 335 196 5 84 401 144 474 2.66e-55 196
Msa0404070 AT1G16280.1 33.690 374 230 6 96 461 63 426 1.08e-54 194
Msa0404070 AT1G77030.1 31.726 394 229 9 102 486 39 401 5.59e-54 198
Msa0404070 AT2G45810.1 33.518 361 221 8 102 457 165 511 1.92e-53 191
Msa0404070 AT3G18600.1 33.524 349 224 4 96 440 94 438 2.55e-52 189
Msa0404070 AT5G11170.1 30.500 400 250 11 85 473 35 417 1.56e-50 181
Msa0404070 AT5G11200.1 30.500 400 250 11 85 473 35 417 1.56e-50 181
Msa0404070 AT5G65900.1 34.188 351 220 6 105 449 168 513 5.91e-50 184
Msa0404070 AT5G11170.2 31.714 350 216 10 130 473 2 334 4.66e-49 175
Msa0404070 AT5G08620.1 34.384 349 205 10 110 440 99 441 1.74e-48 179
Msa0404070 AT1G71370.1 31.282 390 240 10 83 454 6 385 1.83e-48 178
Msa0404070 AT5G05450.1 31.481 378 224 10 102 454 27 394 5.79e-48 177
Msa0404070 AT5G08610.1 33.811 349 207 10 110 440 401 743 3.59e-47 178
Msa0404070 AT3G02065.3 32.044 362 236 7 85 440 104 461 2.45e-46 171
Msa0404070 AT3G02065.2 32.044 362 236 7 85 440 104 461 2.45e-46 171
Msa0404070 AT5G63630.1 33.333 342 204 8 117 440 80 415 5.11e-45 168
Msa0404070 AT1G63250.1 31.624 351 227 7 103 440 340 690 6.25e-45 171
Msa0404070 AT5G63630.2 33.430 344 201 10 117 440 274 609 1.23e-44 170
Msa0404070 AT2G07750.1 31.909 351 226 7 103 440 387 737 1.48e-44 171
Msa0404070 AT5G11200.3 28.864 440 246 13 85 473 35 458 2.24e-44 165
Msa0404070 AT1G12770.2 27.804 428 245 10 95 463 114 536 1.15e-43 165
Msa0404070 AT1G12770.1 27.804 428 245 10 95 463 114 536 1.15e-43 165
Msa0404070 AT3G02065.1 31.776 321 209 7 125 439 7 323 4.61e-43 159
Msa0404070 AT3G09720.2 30.532 357 225 9 94 442 144 485 6.75e-43 162
Msa0404070 AT3G09720.1 30.532 357 225 9 94 442 144 485 6.75e-43 162
Msa0404070 AT4G15850.1 28.515 505 275 15 83 513 21 513 2.82e-41 157
Msa0404070 AT4G34910.1 30.026 383 220 7 95 431 50 430 1.55e-40 157
Msa0404070 AT3G16840.2 29.902 408 214 10 102 440 202 606 1.58e-40 159
Msa0404070 AT3G16840.1 29.902 408 214 10 102 440 201 605 1.72e-40 158
Msa0404070 AT5G11200.2 26.915 457 251 13 85 473 35 476 2.31e-40 154
Msa0404070 AT4G09730.1 31.148 366 221 12 92 435 113 469 4.34e-39 152
Msa0404070 AT5G54910.1 31.161 353 204 10 117 449 97 430 1.96e-37 149
Msa0404070 AT2G40700.1 27.336 428 225 10 93 440 32 453 9.73e-37 145
Msa0404070 AT3G53110.1 29.769 346 195 11 119 435 119 445 1.79e-33 134
Msa0404070 AT3G06980.1 27.559 381 245 10 93 445 376 753 6.34e-33 135
Msa0404070 AT1G51380.2 35.526 228 131 6 96 319 27 242 1.08e-32 127
Msa0404070 AT1G71280.2 29.538 325 166 9 102 405 28 310 4.51e-31 124
Msa0404070 AT1G51380.4 34.783 207 121 4 96 298 27 223 1.16e-30 122
Msa0404070 AT1G51380.3 34.783 207 121 4 96 298 27 223 2.17e-30 122
Msa0404070 AT1G71280.1 30.530 321 176 11 102 409 28 314 6.55e-30 124
Msa0404070 AT1G28180.2 37.719 114 69 1 125 236 7 120 2.75e-16 75.9

Find 200 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGAATTTCACTAAGTTTA+AGG 0.070746 3_2:-34761126 None:intergenic
TTAAACACGGTTTGTGTTTA+TGG 0.097693 3_2:+34761004 Msa0404070:CDS
AGTTGGAACACATTCAATTT+TGG 0.182549 3_2:+34764089 Msa0404070:CDS
ACTTAGTGAAATTCAGTATT+TGG 0.201862 3_2:+34761132 Msa0404070:CDS
CTAAGAGAAGTACCGTTAAT+TGG 0.227037 3_2:-34764068 None:intergenic
CTTTGATGTGTAGTTCTTTC+GGG 0.236568 3_2:-34764182 None:intergenic
AGACTAATTGACCTCATAAA+TGG 0.244644 3_2:+34761097 Msa0404070:CDS
TCAGTGAGACCCTTGATAAT+TGG 0.264507 3_2:-34760746 None:intergenic
CAATCCATTGACTATTGATT+TGG 0.275134 3_2:+34761303 Msa0404070:CDS
CTCTGCAACCATGCCGGGTT+GGG 0.279011 3_2:+34761252 Msa0404070:CDS
CTTCGTCGTCATCAGGTTCT+AGG 0.291225 3_2:+34763778 Msa0404070:CDS
TCAAAGCGGAGAATTCTTTA+TGG 0.300787 3_2:+34761968 Msa0404070:CDS
AGATATTCCCAATGTTGATT+TGG 0.306096 3_2:+34762610 Msa0404070:CDS
CTGAATTTCACTAAGTTTAA+GGG 0.312808 3_2:-34761125 None:intergenic
GAACTCTAAATTGTGACTTT+TGG 0.313236 3_2:+34764509 Msa0404070:three_prime_UTR
CTCTATGGAGATTACTAAAT+AGG 0.315945 3_2:-34764223 None:intergenic
ACACAAACCGTGTTTAAATA+AGG 0.327046 3_2:-34760998 None:intergenic
GCTTTGATGTGTAGTTCTTT+CGG 0.334131 3_2:-34764183 None:intergenic
ATCAAATGCGGGAACCTCTA+TGG 0.338170 3_2:-34764238 None:intergenic
AGTGGTGATGACTGGTTAAT+TGG 0.352807 3_2:+34763819 Msa0404070:CDS
TGCTTTGCTAACTCCCTAGT+TGG 0.358455 3_2:-34760947 None:intergenic
TTAACGGTACTTCTCTTAGT+TGG 0.363400 3_2:+34764072 Msa0404070:CDS
GCCCGTGCAAAGACCGGCAC+TGG 0.365374 3_2:+34760701 Msa0404070:CDS
AACTTGCCTGGTAGATGATT+CGG 0.368381 3_2:-34763520 None:intergenic
TTCCGATGGAAGAAGCCATT+TGG 0.369204 3_2:-34760213 None:intergenic
TCAAACAGATCTTCGTCTTC+AGG 0.370048 3_2:+34763660 Msa0404070:CDS
GGTGGGGATGACTGGCTAAC+TGG 0.370356 3_2:+34763711 Msa0404070:CDS
GATGACTGGCTAACTGGAAC+TGG 0.372565 3_2:+34763717 Msa0404070:CDS
GAAGTAATTATAGAGGATCT+AGG 0.374885 3_2:+34763565 Msa0404070:CDS
GGTGCAAGGACCAGTACTTT+AGG 0.378658 3_2:-34760926 None:intergenic
CACCTCTCAAGAAGCCTTCA+AGG 0.382918 3_2:+34760399 Msa0404070:CDS
CTGACCAGATGCTTGCTGTT+GGG 0.386736 3_2:+34761167 Msa0404070:CDS
TCCGATGGAAGAAGCCATTT+GGG 0.396483 3_2:-34760212 None:intergenic
GAACTTACCAAATCAACATT+GGG 0.398223 3_2:-34762617 None:intergenic
TGGAAGAAGCCATTTGGGTT+TGG 0.399406 3_2:-34760207 None:intergenic
TTTACCAAATCAATAGTCAA+TGG 0.399544 3_2:-34761307 None:intergenic
ATCGAAAGCAAAACCCTTGA+AGG 0.402035 3_2:-34760413 None:intergenic
GGTGGGGATGACTGGCGAAC+TGG 0.411571 3_2:+34763609 Msa0404070:CDS
GATGTTGTGGTTGGAACACC+TGG 0.411964 3_2:+34761073 Msa0404070:CDS
GTACATCGCTCTGGCCGTAC+TGG 0.416882 3_2:+34763369 Msa0404070:CDS
TTAAAACCGGTGGGGATGAC+TGG 0.418638 3_2:+34763703 Msa0404070:CDS
TCCCAGTGCCGGTCTTTGCA+CGG 0.418847 3_2:-34760703 None:intergenic
TTAGAACCGGTGGGGATGAC+TGG 0.422719 3_2:+34763601 Msa0404070:CDS
GTTCATTGCAGAGGTAGTTA+TGG 0.424073 3_2:+34763995 Msa0404070:intron
TAAGGGTTCTCCCATTTATG+AGG 0.428492 3_2:-34761108 None:intergenic
AAATTGATTTAGTGTTTGTT+GGG 0.430422 3_2:+34764296 Msa0404070:three_prime_UTR
TGGTTGTCCACAACTAAAAC+AGG 0.430808 3_2:-34764023 None:intergenic
GATGCTTGCTGTTGGGTTTG+AGG 0.432183 3_2:+34761174 Msa0404070:CDS
GATCTTCGTCTTCAGGCTCT+AGG 0.434585 3_2:+34763667 Msa0404070:CDS
TCTCTGCAACCATGCCGGGT+TGG 0.436565 3_2:+34761251 Msa0404070:CDS
GTGTTGCTGCCTGCATTAGA+AGG 0.441743 3_2:+34760665 Msa0404070:CDS
ATTTGGAATTCCAATTATCA+AGG 0.441819 3_2:+34760736 Msa0404070:CDS
TAAGAGAAGTACCGTTAATT+GGG 0.442189 3_2:-34764067 None:intergenic
GAGGTGAGGATAGGAGCGTT+GGG 0.442286 3_2:-34760382 None:intergenic
AAAATTGATTTAGTGTTTGT+TGG 0.443100 3_2:+34764295 Msa0404070:three_prime_UTR
GAACTTGATATTTCCAAGCT+TGG 0.446617 3_2:+34760484 Msa0404070:CDS
TGAACTTACCAAATCAACAT+TGG 0.449440 3_2:-34762618 None:intergenic
GATGACTGGCGAACTGGAGG+TGG 0.451351 3_2:+34763615 Msa0404070:CDS
TTTCTGAAAGACAGCTGAGC+AGG 0.451510 3_2:-34764365 None:intergenic
AACAGATCTTCGTCGTCATC+AGG 0.453544 3_2:+34763771 Msa0404070:CDS
TGTTTGAAAGAAAATTATAC+AGG 0.453994 3_2:-34764464 None:intergenic
CCCAGTGCCGGTCTTTGCAC+GGG 0.455185 3_2:-34760702 None:intergenic
CAAACCCAACAGCAAGCATC+TGG 0.456638 3_2:-34761171 None:intergenic
AGAGATAGAAGTAATTATAG+AGG 0.457285 3_2:+34763558 Msa0404070:CDS
CAATCTGACGCCCGATGCCC+TGG 0.458234 3_2:-34764043 None:intergenic
ACTTGCCTGGTAGATGATTC+GGG 0.461760 3_2:-34763519 None:intergenic
TTGTGGACAACCAGGGCATC+GGG 0.462191 3_2:+34764033 Msa0404070:CDS
TTGAAGTTGAATACCTGAAT+GGG 0.466476 3_2:-34760562 None:intergenic
CTCTCGAAACCAAACCCAAA+TGG 0.472675 3_2:+34760198 Msa0404070:exon
AAGTTGGTGTATTGAGAAGT+TGG 0.474560 3_2:-34760255 None:intergenic
CAGAGAGAGAAAACATTGAA+TGG 0.475305 3_2:+34762530 Msa0404070:CDS
AGCATAATCTGGCGCTGAGA+TGG 0.477648 3_2:-34761226 None:intergenic
GCTGACCAGATGCTTGCTGT+TGG 0.478095 3_2:+34761166 Msa0404070:CDS
AAGGGTGTTTAGACGGGAAG+TGG 0.479860 3_2:-34760296 None:intergenic
AGGAGCGGCAAGGAAGGATA+AGG 0.480165 3_2:-34760171 None:intergenic
ATCATTGCCCGTGCAAAGAC+CGG 0.483333 3_2:+34760695 Msa0404070:CDS
TGAACCACTTAGGCCATCAC+TGG 0.484550 3_2:-34764141 None:intergenic
TTGCAGAGAAAAGCATAATC+TGG 0.485007 3_2:-34761237 None:intergenic
CGTGGTGTTGATGTTGTGGT+TGG 0.486388 3_2:+34761064 Msa0404070:CDS
CAACAGGAACATGGCTAAGT+TGG 0.488212 3_2:-34760447 None:intergenic
CGTCAGATTGTCCCAATTAA+CGG 0.488304 3_2:+34764056 Msa0404070:CDS
GACTAATTGACCTCATAAAT+GGG 0.493948 3_2:+34761098 Msa0404070:CDS
TGGCTAACTGGAACTGGAGG+TGG 0.494049 3_2:+34763723 Msa0404070:CDS
TGGTCGGCTTCCTAAAGTAC+TGG 0.494432 3_2:+34760916 Msa0404070:CDS
AGGAGAAGGAGCGGCAAGGA+AGG 0.498115 3_2:-34760177 None:intergenic
ACCCAAATGGCTTCTTCCAT+CGG 0.499197 3_2:+34760211 Msa0404070:exon
CTGAGAAGGAAAACCAAGCT+TGG 0.501773 3_2:-34760497 None:intergenic
ACTGGGAAGACATTAGCATT+TGG 0.502302 3_2:+34760719 Msa0404070:CDS
GTTGTGGACAACCAGGGCAT+CGG 0.502872 3_2:+34764032 Msa0404070:CDS
TAATATTTCTGTGGAGTGAA+TGG 0.504401 3_2:-34764423 None:intergenic
GACAACTTCTTGACCCAACC+CGG 0.511795 3_2:-34761265 None:intergenic
ATATCCTTTGAGCGCGAAGT+AGG 0.513620 3_2:+34763453 Msa0404070:CDS
GTTAGCAAAGCAAGTAGAGA+AGG 0.514220 3_2:+34760958 Msa0404070:CDS
TCTCCGCTTTGATGTTGAAG+TGG 0.515468 3_2:-34761957 None:intergenic
TGCTAATGTCTTCCCAGTGC+CGG 0.517376 3_2:-34760714 None:intergenic
TTAAAACCAGTGGTGATGAC+TGG 0.517463 3_2:+34763811 Msa0404070:CDS
GTTGAAGTTGAATACCTGAA+TGG 0.518228 3_2:-34760563 None:intergenic
ACAAAAGTCTCAGGACCATC+GGG 0.518681 3_2:-34763348 None:intergenic
ATGAGGTCAATTAGTCTCCC+AGG 0.519366 3_2:-34761091 None:intergenic
GAGCGATGTACAAAAGTCTC+AGG 0.519453 3_2:-34763357 None:intergenic
ACGGAGAAGGGTGTTTAGAC+GGG 0.520049 3_2:-34760302 None:intergenic
GACGGAGAAGGGTGTTTAGA+CGG 0.520500 3_2:-34760303 None:intergenic
CTATTTAGTAATCTCCATAG+AGG 0.522599 3_2:+34764224 Msa0404070:three_prime_UTR
GGTTTGGTTTCGAGAGGAGA+AGG 0.525936 3_2:-34760191 None:intergenic
TTTATCTCAGGCGGTCTGGT+CGG 0.527861 3_2:+34760900 Msa0404070:intron
TTTGTTGGGGCAATGTTACT+CGG 0.528217 3_2:+34764310 Msa0404070:three_prime_UTR
GCATAATCTGGCGCTGAGAT+GGG 0.533531 3_2:-34761225 None:intergenic
AGAGGTGAGGATAGGAGCGT+TGG 0.534928 3_2:-34760383 None:intergenic
TTCAATTTCTTGAACCACTT+AGG 0.535382 3_2:-34764151 None:intergenic
TACAAAAGTCTCAGGACCAT+CGG 0.536572 3_2:-34763349 None:intergenic
ATCTTCGTCTTCAGGCTCTA+GGG 0.536603 3_2:+34763668 Msa0404070:CDS
AGTTGGTGTATTGAGAAGTT+GGG 0.537093 3_2:-34760254 None:intergenic
TTCACGTGGTGTTGATGTTG+TGG 0.537970 3_2:+34761060 Msa0404070:CDS
GCAGCCTACTTCGCGCTCAA+AGG 0.538313 3_2:-34763457 None:intergenic
CTTCTATCTCTATCAAGTGT+AGG 0.539095 3_2:-34763546 None:intergenic
ATATCTCTACCTTCTAATGC+AGG 0.541305 3_2:-34760674 None:intergenic
AGGTGAGGATAGGAGCGTTG+GGG 0.541838 3_2:-34760381 None:intergenic
CTTCTTGACCCAACCCGGCA+TGG 0.547157 3_2:-34761260 None:intergenic
AGAATGAACAAAGCAATATG+AGG 0.547453 3_2:+34760768 Msa0404070:CDS
TTCGTCGTCATCAGGTTCTA+GGG 0.548645 3_2:+34763779 Msa0404070:CDS
AAGTAATTATAGAGGATCTA+GGG 0.551599 3_2:+34763566 Msa0404070:CDS
AGAGAAGAAAAGCTTGCTGA+AGG 0.552690 3_2:+34761911 Msa0404070:CDS
ACCTCTCAAGAAGCCTTCAA+GGG 0.554185 3_2:+34760400 Msa0404070:CDS
GGGGATGACTGGCGAACTGG+AGG 0.555224 3_2:+34763612 Msa0404070:CDS
GGTAAATCTTGCATAGGTGG+TGG 0.555366 3_2:-34763498 None:intergenic
CATTGCAGAGGTAGTTATGG+AGG 0.556291 3_2:+34763998 Msa0404070:intron
AAGTGTAGGAACAACTTGCC+TGG 0.557140 3_2:-34763532 None:intergenic
GAGAAGAAAAGCTTGCTGAA+GGG 0.558256 3_2:+34761912 Msa0404070:CDS
ACCCTTGAAGGCTTCTTGAG+AGG 0.559026 3_2:-34760401 None:intergenic
TTTGGAATTCCAATTATCAA+GGG 0.559273 3_2:+34760737 Msa0404070:CDS
ACTGGTCCTTGCACCAACTA+GGG 0.559610 3_2:+34760934 Msa0404070:CDS
TATGATAGCTAATATTTCTG+TGG 0.562030 3_2:-34764432 None:intergenic
TCTGGCCGTACTGGACGTGC+AGG 0.562067 3_2:+34763378 Msa0404070:CDS
AATTGATTTAGTGTTTGTTG+GGG 0.565006 3_2:+34764297 Msa0404070:three_prime_UTR
GGTGAGGATAGGAGCGTTGG+GGG 0.566054 3_2:-34760380 None:intergenic
TTGTAGAGTGAAAATGAAGT+TGG 0.566352 3_2:-34760271 None:intergenic
TACTGGTCCTTGCACCAACT+AGG 0.566760 3_2:+34760933 Msa0404070:CDS
CATTTGGGTTTGGTTTCGAG+AGG 0.566819 3_2:-34760197 None:intergenic
CCCGTGCAAAGACCGGCACT+GGG 0.569064 3_2:+34760702 Msa0404070:CDS
GGTCCATGTGCATAGTGAGC+AGG 0.569388 3_2:-34764540 None:intergenic
GGTCTTCCCACCATTTGCAT+AGG 0.572519 3_2:-34762408 None:intergenic
GTTAGGACGGAGACGGAGAA+GGG 0.573864 3_2:-34760314 None:intergenic
TGCTGACGGCAACAGGAACA+TGG 0.573995 3_2:-34760456 None:intergenic
AATTAACCAGTCATCACCAC+TGG 0.576337 3_2:-34763817 None:intergenic
AGTGAGTCAACAAGCTGAGA+AGG 0.576992 3_2:-34760511 None:intergenic
GCTTCTTGAGAGGTGAGGAT+AGG 0.577028 3_2:-34760391 None:intergenic
AAAAGTCTGATATCAAATGC+GGG 0.579088 3_2:-34764249 None:intergenic
AATTCAGCTGCATCCAGTGA+TGG 0.579381 3_2:+34764128 Msa0404070:CDS
AGTTAGCCAGTCATCCCCAC+CGG 0.580437 3_2:-34763709 None:intergenic
GCTACCGACGTTGCTTCTCG+TGG 0.581057 3_2:+34762584 Msa0404070:CDS
TCGGGTAAATCTTGCATAGG+TGG 0.581209 3_2:-34763501 None:intergenic
GTGTTTCTTATGATATTCAG+AGG 0.581523 3_2:+34761029 Msa0404070:CDS
ACTGGACGTGCAGGAAAAGA+AGG 0.582768 3_2:+34763387 Msa0404070:CDS
GGTTAGGACGGAGACGGAGA+AGG 0.582894 3_2:-34760315 None:intergenic
GCATCCAGTGATGGCCTAAG+TGG 0.582998 3_2:+34764137 Msa0404070:CDS
ACTGGAGGTGGACGATCAAG+TGG 0.584590 3_2:+34763627 Msa0404070:CDS
ACTGGAGGTGGACGATCAAG+TGG 0.584590 3_2:+34763735 Msa0404070:CDS
TTGCTTCATTAGAGAGTGTG+CGG 0.585375 3_2:+34760148 Msa0404070:five_prime_UTR
AATCTGGCGCTGAGATGGGA+TGG 0.590472 3_2:-34761221 None:intergenic
CTAACTCCCTAGTTGGTGCA+AGG 0.591840 3_2:-34760940 None:intergenic
GAAATAACGAAGGAAACTGT+GGG 0.591997 3_2:-34760346 None:intergenic
ATTGCAGAGGTAGTTATGGA+GGG 0.595367 3_2:+34763999 Msa0404070:intron
AGAAATAACGAAGGAAACTG+TGG 0.597293 3_2:-34760347 None:intergenic
TTTAGGCCTATGCAAATGGT+GGG 0.598035 3_2:+34762402 Msa0404070:intron
CGAGAGGAGAAGGAGCGGCA+AGG 0.599390 3_2:-34760181 None:intergenic
AGTTCGCCAGTCATCCCCAC+CGG 0.600061 3_2:-34763607 None:intergenic
ATACCTGCTCACTATGCACA+TGG 0.601321 3_2:+34764537 Msa0404070:three_prime_UTR
AAGTGGTTCAAGAAATTGAA+AGG 0.601500 3_2:+34764154 Msa0404070:exon
ATCTGCACCTTATTTAAACA+CGG 0.607535 3_2:+34760991 Msa0404070:CDS
GTTTATGGAAGAAGTTCCGA+TGG 0.609496 3_2:-34760227 None:intergenic
CAGAGGAATGCACTTTCACG+TGG 0.610909 3_2:+34761046 Msa0404070:CDS
AAGCAACGTCGGTAGCAACA+AGG 0.611860 3_2:-34762577 None:intergenic
TCATCAGGTTCTAGGGAGAG+AGG 0.616285 3_2:+34763786 Msa0404070:CDS
ATAGCTTCTAAACCACTACA+TGG 0.622535 3_2:+34762491 Msa0404070:CDS
TGAAGGCTTCTTGAGAGGTG+AGG 0.623187 3_2:-34760396 None:intergenic
AACACGGTTTGTGTTTATGG+TGG 0.625227 3_2:+34761007 Msa0404070:CDS
GATTCGGGTAAATCTTGCAT+AGG 0.625880 3_2:-34763504 None:intergenic
CATACTTTGAAACAAACACA+TGG 0.626477 3_2:-34764561 None:intergenic
AGACGAAGATCTGTTTGATG+AGG 0.635097 3_2:-34763655 None:intergenic
GACTGGCTAACTGGAACTGG+AGG 0.640148 3_2:+34763720 Msa0404070:CDS
GGTGATGACTGGTTAATTGG+AGG 0.643911 3_2:+34763822 Msa0404070:CDS
TTGCAGAGGTAGTTATGGAG+GGG 0.644021 3_2:+34764000 Msa0404070:intron
ATACATTATGAACTTCCCGA+TGG 0.645169 3_2:+34763333 Msa0404070:CDS
CTTTCAAACAAGCTTTCCCG+TGG 0.646855 3_2:+34764477 Msa0404070:three_prime_UTR
GTTGACTCACTTCAGAGACG+TGG 0.653738 3_2:+34760523 Msa0404070:CDS
TGAGAGATATCACCATGTAG+TGG 0.665455 3_2:-34762503 None:intergenic
TGCAGCTGAATTCTTGAACA+AGG 0.665556 3_2:-34764117 None:intergenic
ATTTACCCGAATCATCTACC+AGG 0.667284 3_2:+34763514 Msa0404070:CDS
GGTTTCGAGAGGAGAAGGAG+CGG 0.685868 3_2:-34760186 None:intergenic
GGCAATAGCAGAAATAACGA+AGG 0.690915 3_2:-34760356 None:intergenic
CTGGAGGTGGACGATCAAGT+GGG 0.691338 3_2:+34763628 Msa0404070:CDS
CTGGAGGTGGACGATCAAGT+GGG 0.691338 3_2:+34763736 Msa0404070:CDS
ATGTTGTGGTTGGAACACCT+GGG 0.694661 3_2:+34761074 Msa0404070:CDS
AGAGGATCTAGGGATCAAAG+TGG 0.704990 3_2:+34763576 Msa0404070:CDS
AATAACGAAGGAAACTGTGG+GGG 0.709480 3_2:-34760344 None:intergenic
CAGCCACTTCAACATCAAAG+CGG 0.718579 3_2:+34761954 Msa0404070:CDS
TGAAGTTGAATACCTGAATG+GGG 0.722081 3_2:-34760561 None:intergenic
AAATAACGAAGGAAACTGTG+GGG 0.742350 3_2:-34760345 None:intergenic
TAGTCCACGAGAAGCAACGT+CGG 0.755822 3_2:-34762588 None:intergenic
TCAGGCTCTAGGGATCAGAG+AGG 0.774336 3_2:+34763678 Msa0404070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATTAAATTAACAAAC+AGG - chr3_2:34760825-34760844 None:intergenic 10.0%
!!! AAACTAAATTTTACAAGATA+AGG - chr3_2:34760609-34760628 None:intergenic 15.0%
!! ATTATTATAATGATGCATTT+CGG + chr3_2:34760871-34760890 Msa0404070:intron 15.0%
!!! TAAAATACCTAATCATTTTA+TGG + chr3_2:34761581-34761600 Msa0404070:intron 15.0%
!!! ATAATCACATTTTCATTTTT+TGG + chr3_2:34761651-34761670 Msa0404070:intron 15.0%
!!! AAGATTTTGGTTTTAAAATT+TGG + chr3_2:34762857-34762876 Msa0404070:intron 15.0%
!! ATAAAATAAAAACATTGGAA+TGG - chr3_2:34763293-34763312 None:intergenic 15.0%
!! AATAAATGAGACATGTAATT+TGG - chr3_2:34761359-34761378 None:intergenic 20.0%
!! AATAGAAAAGTCATAGATTA+TGG - chr3_2:34761532-34761551 None:intergenic 20.0%
!! AACTAGATTATTCATGAAAT+GGG - chr3_2:34761617-34761636 None:intergenic 20.0%
!! AAACTAGATTATTCATGAAA+TGG - chr3_2:34761618-34761637 None:intergenic 20.0%
!!! TTTCACTTTTCTTTTTAACA+AGG + chr3_2:34761880-34761899 Msa0404070:intron 20.0%
!!! TGTATATTATCATGTCTTTT+AGG + chr3_2:34762385-34762404 Msa0404070:intron 20.0%
!!! ATTACTGTTATTTGGTATTT+AGG + chr3_2:34762788-34762807 Msa0404070:intron 20.0%
!! TAAGTTTGATTACTGTTATT+TGG + chr3_2:34762815-34762834 Msa0404070:intron 20.0%
!!! ATTACTGTTATTTGGTATTT+AGG + chr3_2:34762788-34762807 Msa0404070:intron 20.0%
!!! GGATTTCTCAATTTTTAATT+TGG + chr3_2:34762952-34762971 Msa0404070:intron 20.0%
!! ATCCAAAATTTACATATAAC+AGG - chr3_2:34762982-34763001 None:intergenic 20.0%
!!! ATTTCAATTTTGTTTACCAT+CGG + chr3_2:34763159-34763178 Msa0404070:intron 20.0%
!!! AAAAAGATGTTTTTATGCTT+TGG + chr3_2:34763219-34763238 Msa0404070:intron 20.0%
!! AGATTCATTTGCTTTATATT+TGG + chr3_2:34763944-34763963 Msa0404070:intron 20.0%
!! GATTCATTTGCTTTATATTT+GGG + chr3_2:34763945-34763964 Msa0404070:intron 20.0%
!!! ACTAAATCAATTTTACATCA+CGG - chr3_2:34764289-34764308 None:intergenic 20.0%
!!! AAAATTGATTTAGTGTTTGT+TGG + chr3_2:34764295-34764314 Msa0404070:three_prime_UTR 20.0%
!!! AAATTGATTTAGTGTTTGTT+GGG + chr3_2:34764296-34764315 Msa0404070:three_prime_UTR 20.0%
!! TGTTTGAAAGAAAATTATAC+AGG - chr3_2:34764467-34764486 None:intergenic 20.0%
!! ATTTGGAATTCCAATTATCA+AGG + chr3_2:34760736-34760755 Msa0404070:CDS 25.0%
!! TTTGGAATTCCAATTATCAA+GGG + chr3_2:34760737-34760756 Msa0404070:CDS 25.0%
! CTGAATTTCACTAAGTTTAA+GGG - chr3_2:34761128-34761147 None:intergenic 25.0%
! ACTGAATTTCACTAAGTTTA+AGG - chr3_2:34761129-34761148 None:intergenic 25.0%
! ACTTAGTGAAATTCAGTATT+TGG + chr3_2:34761132-34761151 Msa0404070:CDS 25.0%
! TTTACCAAATCAATAGTCAA+TGG - chr3_2:34761310-34761329 None:intergenic 25.0%
! TCAACAAGACTCAAATAATT+GGG - chr3_2:34761447-34761466 None:intergenic 25.0%
! ACAAAGACCATAAAATGATT+AGG - chr3_2:34761591-34761610 None:intergenic 25.0%
! ACTAGATTATTCATGAAATG+GGG - chr3_2:34761616-34761635 None:intergenic 25.0%
! GATATGCATGTATAATCAAT+TGG + chr3_2:34761696-34761715 Msa0404070:intron 25.0%
! TTATAGTCCAAATCTATGAA+TGG - chr3_2:34761739-34761758 None:intergenic 25.0%
!!! AATTTTTTATGTCAAACTGC+TGG + chr3_2:34761784-34761803 Msa0404070:intron 25.0%
! AATTACAATGACGTAAAGAT+CGG - chr3_2:34761821-34761840 None:intergenic 25.0%
!! ACTTTTCTTTTTAACAAGGT+CGG + chr3_2:34761884-34761903 Msa0404070:intron 25.0%
!! AGAAAACATTGAATGGTTTT+CGG + chr3_2:34762537-34762556 Msa0404070:CDS 25.0%
!!! AAGTTCAAAGTGATGTTTTT+TGG + chr3_2:34762634-34762653 Msa0404070:intron 25.0%
! ATAACAGTAATCAACATGAA+GGG - chr3_2:34762779-34762798 None:intergenic 25.0%
! AATAACAGTAATCAACATGA+AGG - chr3_2:34762780-34762799 None:intergenic 25.0%
!! TCATGTTGATTACTGTTATT+TGG + chr3_2:34762780-34762799 Msa0404070:intron 25.0%
!!! GGCATTTAAGTTTAAGATTT+TGG + chr3_2:34762844-34762863 Msa0404070:intron 25.0%
!!! AAATTTGGTGTCTACAAATT+TGG + chr3_2:34762872-34762891 Msa0404070:intron 25.0%
!!! AATTTGGTGTCTACAAATTT+GGG + chr3_2:34762873-34762892 Msa0404070:intron 25.0%
! TTAACAAAGCATGTTTATTC+TGG + chr3_2:34762925-34762944 Msa0404070:intron 25.0%
!! TGCCTGTTATATGTAAATTT+TGG + chr3_2:34762977-34762996 Msa0404070:intron 25.0%
! TGAATATCCTTATATCAAAC+AGG - chr3_2:34763007-34763026 None:intergenic 25.0%
! GTACGTTATTTAATCTGATT+TGG + chr3_2:34763070-34763089 Msa0404070:intron 25.0%
! TGTTTGTTTAAACAATGCAT+TGG + chr3_2:34763119-34763138 Msa0404070:intron 25.0%
! AGAGATAGAAGTAATTATAG+AGG + chr3_2:34763558-34763577 Msa0404070:CDS 25.0%
! AAGTAATTATAGAGGATCTA+GGG + chr3_2:34763566-34763585 Msa0404070:CDS 25.0%
! AAAAAGTCTGATATCAAATG+CGG - chr3_2:34764253-34764272 None:intergenic 25.0%
!! AATTGATTTAGTGTTTGTTG+GGG + chr3_2:34764297-34764316 Msa0404070:three_prime_UTR 25.0%
!! TATGATAGCTAATATTTCTG+TGG - chr3_2:34764435-34764454 None:intergenic 25.0%
TTGTAGAGTGAAAATGAAGT+TGG - chr3_2:34760274-34760293 None:intergenic 30.0%
TTGAAGTTGAATACCTGAAT+GGG - chr3_2:34760565-34760584 None:intergenic 30.0%
AGAATGAACAAAGCAATATG+AGG + chr3_2:34760768-34760787 Msa0404070:CDS 30.0%
! ATCTGCACCTTATTTAAACA+CGG + chr3_2:34760991-34761010 Msa0404070:CDS 30.0%
ACACAAACCGTGTTTAAATA+AGG - chr3_2:34761001-34761020 None:intergenic 30.0%
TTAAACACGGTTTGTGTTTA+TGG + chr3_2:34761004-34761023 Msa0404070:CDS 30.0%
GTGTTTCTTATGATATTCAG+AGG + chr3_2:34761029-34761048 Msa0404070:CDS 30.0%
AGACTAATTGACCTCATAAA+TGG + chr3_2:34761097-34761116 Msa0404070:CDS 30.0%
GACTAATTGACCTCATAAAT+GGG + chr3_2:34761098-34761117 Msa0404070:CDS 30.0%
! CAATCCATTGACTATTGATT+TGG + chr3_2:34761303-34761322 Msa0404070:CDS 30.0%
AACAAGACTCAAATAATTGG+GGG - chr3_2:34761445-34761464 None:intergenic 30.0%
CAACAAGACTCAAATAATTG+GGG - chr3_2:34761446-34761465 None:intergenic 30.0%
GTCAACAAGACTCAAATAAT+TGG - chr3_2:34761448-34761467 None:intergenic 30.0%
ATTACTAAGCAATGTTTGTG+TGG + chr3_2:34761557-34761576 Msa0404070:intron 30.0%
TTACTAAGCAATGTTTGTGT+GGG + chr3_2:34761558-34761577 Msa0404070:intron 30.0%
! AATAATCTAGTTTACAGCAG+TGG + chr3_2:34761625-34761644 Msa0404070:intron 30.0%
TATACATGCATATCATGTGA+TGG - chr3_2:34761690-34761709 None:intergenic 30.0%
AATCAATTGGAGAGAAATGA+AGG + chr3_2:34761709-34761728 Msa0404070:intron 30.0%
ATCAATTGGAGAGAAATGAA+GGG + chr3_2:34761710-34761729 Msa0404070:intron 30.0%
!!! TTGTTTTAATCGCCACAAAA+CGG + chr3_2:34761846-34761865 Msa0404070:intron 30.0%
!!! GAGGTTTTGTTTAGTAGTTA+TGG + chr3_2:34762065-34762084 Msa0404070:intron 30.0%
! TATCATTTTAAACAGTGAGC+AGG - chr3_2:34762100-34762119 None:intergenic 30.0%
TGTATTCAAGAGTAACTTGA+AGG - chr3_2:34762341-34762360 None:intergenic 30.0%
GTTACTCTTGAATACAAGAA+AGG + chr3_2:34762345-34762364 Msa0404070:intron 30.0%
! TTTTGTCCGTGTAAAAACAA+TGG - chr3_2:34762432-34762451 None:intergenic 30.0%
!!! TTGTTTTTACACGGACAAAA+AGG + chr3_2:34762432-34762451 Msa0404070:CDS 30.0%
!! TGTTTTTACACGGACAAAAA+GGG + chr3_2:34762433-34762452 Msa0404070:CDS 30.0%
! AGATATTCCCAATGTTGATT+TGG + chr3_2:34762610-34762629 Msa0404070:CDS 30.0%
GAACTTACCAAATCAACATT+GGG - chr3_2:34762620-34762639 None:intergenic 30.0%
TGAACTTACCAAATCAACAT+TGG - chr3_2:34762621-34762640 None:intergenic 30.0%
AAACATCTTATCTTCAGTCT+CGG + chr3_2:34762666-34762685 Msa0404070:intron 30.0%
CGTGATATATTATCTTCTCT+AGG + chr3_2:34762897-34762916 Msa0404070:intron 30.0%
AAGCATGTTTATTCTGGATA+AGG + chr3_2:34762931-34762950 Msa0404070:intron 30.0%
! GGATATAACAGTTCTTTTCT+GGG - chr3_2:34763439-34763458 None:intergenic 30.0%
! AGGATATAACAGTTCTTTTC+TGG - chr3_2:34763440-34763459 None:intergenic 30.0%
GAAGTAATTATAGAGGATCT+AGG + chr3_2:34763565-34763584 Msa0404070:CDS 30.0%
!! TAAGAGAAGTACCGTTAATT+GGG - chr3_2:34764070-34764089 None:intergenic 30.0%
! AGTTGGAACACATTCAATTT+TGG + chr3_2:34764089-34764108 Msa0404070:CDS 30.0%
TTCAATTTCTTGAACCACTT+AGG - chr3_2:34764154-34764173 None:intergenic 30.0%
AAGTGGTTCAAGAAATTGAA+AGG + chr3_2:34764154-34764173 Msa0404070:exon 30.0%
CTCTATGGAGATTACTAAAT+AGG - chr3_2:34764226-34764245 None:intergenic 30.0%
CTATTTAGTAATCTCCATAG+AGG + chr3_2:34764224-34764243 Msa0404070:three_prime_UTR 30.0%
AAAAGTCTGATATCAAATGC+GGG - chr3_2:34764252-34764271 None:intergenic 30.0%
! TAATATTTCTGTGGAGTGAA+TGG - chr3_2:34764426-34764445 None:intergenic 30.0%
! GAACTCTAAATTGTGACTTT+TGG + chr3_2:34764509-34764528 Msa0404070:three_prime_UTR 30.0%
!! CATACTTTGAAACAAACACA+TGG - chr3_2:34764564-34764583 None:intergenic 30.0%
!!! GAGAAGTTGGGTTTTGTTTA+TGG - chr3_2:34760245-34760264 None:intergenic 35.0%
! AGTTGGTGTATTGAGAAGTT+GGG - chr3_2:34760257-34760276 None:intergenic 35.0%
!! AAGTTGGTGTATTGAGAAGT+TGG - chr3_2:34760258-34760277 None:intergenic 35.0%
AAATAACGAAGGAAACTGTG+GGG - chr3_2:34760348-34760367 None:intergenic 35.0%
GAAATAACGAAGGAAACTGT+GGG - chr3_2:34760349-34760368 None:intergenic 35.0%
AGAAATAACGAAGGAAACTG+TGG - chr3_2:34760350-34760369 None:intergenic 35.0%
!! ATCAAGTTCGTTTTTGCTGA+CGG - chr3_2:34760473-34760492 None:intergenic 35.0%
GAACTTGATATTTCCAAGCT+TGG + chr3_2:34760484-34760503 Msa0404070:CDS 35.0%
! TACTAAACTTTTCCCCATTC+AGG + chr3_2:34760549-34760568 Msa0404070:CDS 35.0%
TGAAGTTGAATACCTGAATG+GGG - chr3_2:34760564-34760583 None:intergenic 35.0%
GTTGAAGTTGAATACCTGAA+TGG - chr3_2:34760566-34760585 None:intergenic 35.0%
GCTCTCTAATCAACAAGATA+AGG - chr3_2:34760644-34760663 None:intergenic 35.0%
ATATCTCTACCTTCTAATGC+AGG - chr3_2:34760677-34760696 None:intergenic 35.0%
TGAACAAAGCAATATGAGGT+AGG + chr3_2:34760772-34760791 Msa0404070:intron 35.0%
!!! TTTCGGTGTTCTTTTATCTC+AGG + chr3_2:34760888-34760907 Msa0404070:intron 35.0%
! TTGCAGAGAAAAGCATAATC+TGG - chr3_2:34761240-34761259 None:intergenic 35.0%
CTCTATAGTCAACACACATT+GGG - chr3_2:34761402-34761421 None:intergenic 35.0%
ACTCTATAGTCAACACACAT+TGG - chr3_2:34761403-34761422 None:intergenic 35.0%
! TGTTGACTATAGAGTCAAAG+AGG + chr3_2:34761408-34761427 Msa0404070:intron 35.0%
ACAAGACTCAAATAATTGGG+GGG - chr3_2:34761444-34761463 None:intergenic 35.0%
TGACGTAAAACTCACCTAAA+TGG + chr3_2:34761464-34761483 Msa0404070:intron 35.0%
! TAAGCAAATTCCTGCCATTT+AGG - chr3_2:34761481-34761500 None:intergenic 35.0%
AGGGAAACCATTCATAGATT+TGG + chr3_2:34761729-34761748 Msa0404070:intron 35.0%
TCAAAGCGGAGAATTCTTTA+TGG + chr3_2:34761968-34761987 Msa0404070:CDS 35.0%
! ATCTACATTTTGCTTCTCTG+AGG + chr3_2:34762046-34762065 Msa0404070:intron 35.0%
AAAACTTCTTGTTCAGAAGC+AGG + chr3_2:34762128-34762147 Msa0404070:intron 35.0%
ATGGAGTTCGTTTAAACAGT+TGG - chr3_2:34762157-34762176 None:intergenic 35.0%
AACTGTTTAAACGAACTCCA+TGG + chr3_2:34762156-34762175 Msa0404070:intron 35.0%
TTTAAACGAACTCCATGGTT+TGG + chr3_2:34762161-34762180 Msa0404070:intron 35.0%
AATACCCTGACACAAACTTA+AGG + chr3_2:34762245-34762264 Msa0404070:intron 35.0%
!! AAGAGTAACTTGAAGGCATT+TGG - chr3_2:34762334-34762353 None:intergenic 35.0%
!!! GGAAGACCATTGTTTTTACA+CGG + chr3_2:34762423-34762442 Msa0404070:CDS 35.0%
ATAGCTTCTAAACCACTACA+TGG + chr3_2:34762491-34762510 Msa0404070:CDS 35.0%
CAGAGAGAGAAAACATTGAA+TGG + chr3_2:34762530-34762549 Msa0404070:CDS 35.0%
GAAGATAAGATGTTTGGACA+TGG - chr3_2:34762661-34762680 None:intergenic 35.0%
GAGACTGAAGATAAGATGTT+TGG - chr3_2:34762667-34762686 None:intergenic 35.0%
TTAATATGCAATGCCAACTG+AGG + chr3_2:34762742-34762761 Msa0404070:intron 35.0%
GTGACAGAGATTGAGTAATA+AGG - chr3_2:34763049-34763068 None:intergenic 35.0%
TTACCATCGGATGAGTTTAA+AGG + chr3_2:34763172-34763191 Msa0404070:intron 35.0%
AAACCTTTAAACTCATCCGA+TGG - chr3_2:34763178-34763197 None:intergenic 35.0%
AAAACATTGGAATGGCAACA+AGG - chr3_2:34763285-34763304 None:intergenic 35.0%
ATACATTATGAACTTCCCGA+TGG + chr3_2:34763333-34763352 Msa0404070:CDS 35.0%
CTTCTATCTCTATCAAGTGT+AGG - chr3_2:34763549-34763568 None:intergenic 35.0%
!!! GATCAAAGTGGTTTTAGAAC+CGG + chr3_2:34763588-34763607 Msa0404070:CDS 35.0%
!!! GATCAGAGAGGTTTTAAAAC+CGG + chr3_2:34763690-34763709 Msa0404070:CDS 35.0%
ATTTCTTGTTACCTCCTGTT+TGG - chr3_2:34763891-34763910 None:intergenic 35.0%
!! CTAAGAGAAGTACCGTTAAT+TGG - chr3_2:34764071-34764090 None:intergenic 35.0%
TTAACGGTACTTCTCTTAGT+TGG + chr3_2:34764072-34764091 Msa0404070:CDS 35.0%
CTTTGATGTGTAGTTCTTTC+GGG - chr3_2:34764185-34764204 None:intergenic 35.0%
GCTTTGATGTGTAGTTCTTT+CGG - chr3_2:34764186-34764205 None:intergenic 35.0%
! TAGAGTTCATTTTCGTACCA+CGG - chr3_2:34764497-34764516 None:intergenic 35.0%
! TTGCTTCATTAGAGAGTGTG+CGG + chr3_2:34760148-34760167 Msa0404070:five_prime_UTR 40.0%
GTTTATGGAAGAAGTTCCGA+TGG - chr3_2:34760230-34760249 None:intergenic 40.0%
AATAACGAAGGAAACTGTGG+GGG - chr3_2:34760347-34760366 None:intergenic 40.0%
GGCAATAGCAGAAATAACGA+AGG - chr3_2:34760359-34760378 None:intergenic 40.0%
ATCGAAAGCAAAACCCTTGA+AGG - chr3_2:34760416-34760435 None:intergenic 40.0%
ACTGGGAAGACATTAGCATT+TGG + chr3_2:34760719-34760738 Msa0404070:CDS 40.0%
! TCAGTGAGACCCTTGATAAT+TGG - chr3_2:34760749-34760768 None:intergenic 40.0%
GTTAGCAAAGCAAGTAGAGA+AGG + chr3_2:34760958-34760977 Msa0404070:CDS 40.0%
AACACGGTTTGTGTTTATGG+TGG + chr3_2:34761007-34761026 Msa0404070:CDS 40.0%
TAAGGGTTCTCCCATTTATG+AGG - chr3_2:34761111-34761130 None:intergenic 40.0%
CAAGACTCAAATAATTGGGG+GGG - chr3_2:34761443-34761462 None:intergenic 40.0%
GTAAAACTCACCTAAATGGC+AGG + chr3_2:34761468-34761487 Msa0404070:intron 40.0%
!! AGAGAAGAAAAGCTTGCTGA+AGG + chr3_2:34761911-34761930 Msa0404070:CDS 40.0%
!! GAGAAGAAAAGCTTGCTGAA+GGG + chr3_2:34761912-34761931 Msa0404070:CDS 40.0%
!! CACAGTCTTAGCTTGTTGTT+TGG + chr3_2:34762020-34762039 Msa0404070:intron 40.0%
TATGCATGAATGCCAAACCA+TGG - chr3_2:34762176-34762195 None:intergenic 40.0%
ACAGCCTTAAGTTTGTGTCA+GGG - chr3_2:34762252-34762271 None:intergenic 40.0%
! GTCTTTTAGGCCTATGCAAA+TGG + chr3_2:34762398-34762417 Msa0404070:intron 40.0%
! TTTTAGGCCTATGCAAATGG+TGG + chr3_2:34762401-34762420 Msa0404070:intron 40.0%
TTTAGGCCTATGCAAATGGT+GGG + chr3_2:34762402-34762421 Msa0404070:intron 40.0%
TGAGAGATATCACCATGTAG+TGG - chr3_2:34762506-34762525 None:intergenic 40.0%
! ACATTGAATGGTTTTCGGCA+AGG + chr3_2:34762542-34762561 Msa0404070:CDS 40.0%
!! GGTTTTATCAAAGCCTCAGT+TGG - chr3_2:34762758-34762777 None:intergenic 40.0%
TGGATCGCCTGTTTGATATA+AGG + chr3_2:34762997-34763016 Msa0404070:intron 40.0%
TACAAAAGTCTCAGGACCAT+CGG - chr3_2:34763352-34763371 None:intergenic 40.0%
!! AACAGTTCTTTTCTGGGAAG+TGG - chr3_2:34763433-34763452 None:intergenic 40.0%
GATTCGGGTAAATCTTGCAT+AGG - chr3_2:34763507-34763526 None:intergenic 40.0%
ATTTACCCGAATCATCTACC+AGG + chr3_2:34763514-34763533 Msa0404070:CDS 40.0%
AACTTGCCTGGTAGATGATT+CGG - chr3_2:34763523-34763542 None:intergenic 40.0%
!!! AAAGTGGTTTTAGAACCGGT+GGG + chr3_2:34763592-34763611 Msa0404070:CDS 40.0%
AGACGAAGATCTGTTTGATG+AGG - chr3_2:34763658-34763677 None:intergenic 40.0%
TCAAACAGATCTTCGTCTTC+AGG + chr3_2:34763660-34763679 Msa0404070:CDS 40.0%
!!! AGAGAGGTTTTAAAACCGGT+GGG + chr3_2:34763694-34763713 Msa0404070:CDS 40.0%
!!! GAGAGAGGTTTTAAAACCAG+TGG + chr3_2:34763801-34763820 Msa0404070:CDS 40.0%
! TTAAAACCAGTGGTGATGAC+TGG + chr3_2:34763811-34763830 Msa0404070:CDS 40.0%
AATTAACCAGTCATCACCAC+TGG - chr3_2:34763820-34763839 None:intergenic 40.0%
! AGTGGTGATGACTGGTTAAT+TGG + chr3_2:34763819-34763838 Msa0404070:CDS 40.0%
ACAGATCTTCATCACCAAAC+AGG + chr3_2:34763874-34763893 Msa0404070:intron 40.0%
CATCTGAATGTTCATTGCAG+AGG + chr3_2:34763986-34764005 Msa0404070:intron 40.0%
GTTCATTGCAGAGGTAGTTA+TGG + chr3_2:34763995-34764014 Msa0404070:intron 40.0%
ATTGCAGAGGTAGTTATGGA+GGG + chr3_2:34763999-34764018 Msa0404070:intron 40.0%
TGGTTGTCCACAACTAAAAC+AGG - chr3_2:34764026-34764045 None:intergenic 40.0%
!!! TGTTTTAGTTGTGGACAACC+AGG + chr3_2:34764025-34764044 Msa0404070:CDS 40.0%
!!! GTTTTAGTTGTGGACAACCA+GGG + chr3_2:34764026-34764045 Msa0404070:CDS 40.0%
CGTCAGATTGTCCCAATTAA+CGG + chr3_2:34764056-34764075 Msa0404070:CDS 40.0%
TGCAGCTGAATTCTTGAACA+AGG - chr3_2:34764120-34764139 None:intergenic 40.0%
TTTGTTGGGGCAATGTTACT+CGG + chr3_2:34764310-34764329 Msa0404070:three_prime_UTR 40.0%
GCTGTCTTTCAGAAAAAGAC+AGG + chr3_2:34764373-34764392 Msa0404070:three_prime_UTR 40.0%
! AGAGTTCATTTTCGTACCAC+GGG - chr3_2:34764496-34764515 None:intergenic 40.0%
! CATTTGGGTTTGGTTTCGAG+AGG - chr3_2:34760200-34760219 None:intergenic 45.0%
CTCTCGAAACCAAACCCAAA+TGG + chr3_2:34760198-34760217 Msa0404070:exon 45.0%
! TGGAAGAAGCCATTTGGGTT+TGG - chr3_2:34760210-34760229 None:intergenic 45.0%
ACCCAAATGGCTTCTTCCAT+CGG + chr3_2:34760211-34760230 Msa0404070:exon 45.0%
TCCGATGGAAGAAGCCATTT+GGG - chr3_2:34760215-34760234 None:intergenic 45.0%
TTCCGATGGAAGAAGCCATT+TGG - chr3_2:34760216-34760235 None:intergenic 45.0%
! TTTTGTGGTTAGGACGGAGA+CGG - chr3_2:34760324-34760343 None:intergenic 45.0%
ACCTCTCAAGAAGCCTTCAA+GGG + chr3_2:34760400-34760419 Msa0404070:CDS 45.0%
CAACAGGAACATGGCTAAGT+TGG - chr3_2:34760450-34760469 None:intergenic 45.0%
CTGAGAAGGAAAACCAAGCT+TGG - chr3_2:34760500-34760519 None:intergenic 45.0%
AGTGAGTCAACAAGCTGAGA+AGG - chr3_2:34760514-34760533 None:intergenic 45.0%
! CGGTGTTCTTTTATCTCAGG+CGG + chr3_2:34760891-34760910 Msa0404070:intron 45.0%
! TTCTTTTATCTCAGGCGGTC+TGG + chr3_2:34760896-34760915 Msa0404070:intron 45.0%
TGCTTTGCTAACTCCCTAGT+TGG - chr3_2:34760950-34760969 None:intergenic 45.0%
!! TTCACGTGGTGTTGATGTTG+TGG + chr3_2:34761060-34761079 Msa0404070:CDS 45.0%
ATGTTGTGGTTGGAACACCT+GGG + chr3_2:34761074-34761093 Msa0404070:CDS 45.0%
! ATGAGGTCAATTAGTCTCCC+AGG - chr3_2:34761094-34761113 None:intergenic 45.0%
ACTCAAATAATTGGGGGGGT+AGG - chr3_2:34761439-34761458 None:intergenic 45.0%
! AGCACATCAACACCGTTTTG+TGG - chr3_2:34761861-34761880 None:intergenic 45.0%
CAGCCACTTCAACATCAAAG+CGG + chr3_2:34761954-34761973 Msa0404070:CDS 45.0%
TCTCCGCTTTGATGTTGAAG+TGG - chr3_2:34761960-34761979 None:intergenic 45.0%
GACAGCCTTAAGTTTGTGTC+AGG - chr3_2:34762253-34762272 None:intergenic 45.0%
TACACGGACAAAAAGGGATG+CGG + chr3_2:34762439-34762458 Msa0404070:CDS 45.0%
ACAAAAGTCTCAGGACCATC+GGG - chr3_2:34763351-34763370 None:intergenic 45.0%
GAGCGATGTACAAAAGTCTC+AGG - chr3_2:34763360-34763379 None:intergenic 45.0%
! GAGACTTTTGTACATCGCTC+TGG + chr3_2:34763360-34763379 Msa0404070:CDS 45.0%
ATATCCTTTGAGCGCGAAGT+AGG + chr3_2:34763453-34763472 Msa0404070:CDS 45.0%
GGTAAATCTTGCATAGGTGG+TGG - chr3_2:34763501-34763520 None:intergenic 45.0%
TCGGGTAAATCTTGCATAGG+TGG - chr3_2:34763504-34763523 None:intergenic 45.0%
ACTTGCCTGGTAGATGATTC+GGG - chr3_2:34763522-34763541 None:intergenic 45.0%
AAGTGTAGGAACAACTTGCC+TGG - chr3_2:34763535-34763554 None:intergenic 45.0%
AGAGGATCTAGGGATCAAAG+TGG + chr3_2:34763576-34763595 Msa0404070:CDS 45.0%
!!! CAAAGTGGTTTTAGAACCGG+TGG + chr3_2:34763591-34763610 Msa0404070:CDS 45.0%
!!! AAGTGGTTTTAGAACCGGTG+GGG + chr3_2:34763593-34763612 Msa0404070:CDS 45.0%
ATCTTCGTCTTCAGGCTCTA+GGG + chr3_2:34763668-34763687 Msa0404070:CDS 45.0%
!!! CAGAGAGGTTTTAAAACCGG+TGG + chr3_2:34763693-34763712 Msa0404070:CDS 45.0%
!!! GAGAGGTTTTAAAACCGGTG+GGG + chr3_2:34763695-34763714 Msa0404070:CDS 45.0%
AACAGATCTTCGTCGTCATC+AGG + chr3_2:34763771-34763790 Msa0404070:CDS 45.0%
TTCGTCGTCATCAGGTTCTA+GGG + chr3_2:34763779-34763798 Msa0404070:CDS 45.0%
! GGTGATGACTGGTTAATTGG+AGG + chr3_2:34763822-34763841 Msa0404070:CDS 45.0%
ATTGGAGGTAGACGATCAAG+CGG + chr3_2:34763837-34763856 Msa0404070:intron 45.0%
GATCTTCATCACCAAACAGG+AGG + chr3_2:34763877-34763896 Msa0404070:intron 45.0%
TTGGGTGTGCGTATAACTCA+TGG + chr3_2:34763963-34763982 Msa0404070:intron 45.0%
CATTGCAGAGGTAGTTATGG+AGG + chr3_2:34763998-34764017 Msa0404070:intron 45.0%
TTGCAGAGGTAGTTATGGAG+GGG + chr3_2:34764000-34764019 Msa0404070:intron 45.0%
AATTCAGCTGCATCCAGTGA+TGG + chr3_2:34764128-34764147 Msa0404070:CDS 45.0%
ATCAAATGCGGGAACCTCTA+TGG - chr3_2:34764241-34764260 None:intergenic 45.0%
! TTTCTGAAAGACAGCTGAGC+AGG - chr3_2:34764368-34764387 None:intergenic 45.0%
CTTTCAAACAAGCTTTCCCG+TGG + chr3_2:34764477-34764496 Msa0404070:three_prime_UTR 45.0%
ATACCTGCTCACTATGCACA+TGG + chr3_2:34764537-34764556 Msa0404070:three_prime_UTR 45.0%
!! AAAAAATAAAATAAAAACAT+TGG - chr3_2:34763298-34763317 None:intergenic 5.0%
! GGTTTGGTTTCGAGAGGAGA+AGG - chr3_2:34760194-34760213 None:intergenic 50.0%
!! AAGGGTGTTTAGACGGGAAG+TGG - chr3_2:34760299-34760318 None:intergenic 50.0%
!! ACGGAGAAGGGTGTTTAGAC+GGG - chr3_2:34760305-34760324 None:intergenic 50.0%
!! GACGGAGAAGGGTGTTTAGA+CGG - chr3_2:34760306-34760325 None:intergenic 50.0%
!! TGGGGGTTTTGTGGTTAGGA+CGG - chr3_2:34760330-34760349 None:intergenic 50.0%
!! ACTGTGGGGGTTTTGTGGTT+AGG - chr3_2:34760334-34760353 None:intergenic 50.0%
! AGGAAACTGTGGGGGTTTTG+TGG - chr3_2:34760339-34760358 None:intergenic 50.0%
GCTTCTTGAGAGGTGAGGAT+AGG - chr3_2:34760394-34760413 None:intergenic 50.0%
TGAAGGCTTCTTGAGAGGTG+AGG - chr3_2:34760399-34760418 None:intergenic 50.0%
CACCTCTCAAGAAGCCTTCA+AGG + chr3_2:34760399-34760418 Msa0404070:CDS 50.0%
ACCCTTGAAGGCTTCTTGAG+AGG - chr3_2:34760404-34760423 None:intergenic 50.0%
!! TCGTTTTTGCTGACGGCAAC+AGG - chr3_2:34760466-34760485 None:intergenic 50.0%
! GTTGACTCACTTCAGAGACG+TGG + chr3_2:34760523-34760542 Msa0404070:CDS 50.0%
! GTGTTGCTGCCTGCATTAGA+AGG + chr3_2:34760665-34760684 Msa0404070:CDS 50.0%
ATCATTGCCCGTGCAAAGAC+CGG + chr3_2:34760695-34760714 Msa0404070:CDS 50.0%
TGCTAATGTCTTCCCAGTGC+CGG - chr3_2:34760717-34760736 None:intergenic 50.0%
TTTATCTCAGGCGGTCTGGT+CGG + chr3_2:34760900-34760919 Msa0404070:intron 50.0%
! TGGTCGGCTTCCTAAAGTAC+TGG + chr3_2:34760916-34760935 Msa0404070:CDS 50.0%
GGTGCAAGGACCAGTACTTT+AGG - chr3_2:34760929-34760948 None:intergenic 50.0%
TACTGGTCCTTGCACCAACT+AGG + chr3_2:34760933-34760952 Msa0404070:CDS 50.0%
ACTGGTCCTTGCACCAACTA+GGG + chr3_2:34760934-34760953 Msa0404070:CDS 50.0%
! CTAACTCCCTAGTTGGTGCA+AGG - chr3_2:34760943-34760962 None:intergenic 50.0%
CAGAGGAATGCACTTTCACG+TGG + chr3_2:34761046-34761065 Msa0404070:CDS 50.0%
!! CGTGGTGTTGATGTTGTGGT+TGG + chr3_2:34761064-34761083 Msa0404070:CDS 50.0%
GATGTTGTGGTTGGAACACC+TGG + chr3_2:34761073-34761092 Msa0404070:CDS 50.0%
!! CTGACCAGATGCTTGCTGTT+GGG + chr3_2:34761167-34761186 Msa0404070:CDS 50.0%
CAAACCCAACAGCAAGCATC+TGG - chr3_2:34761174-34761193 None:intergenic 50.0%
!! GATGCTTGCTGTTGGGTTTG+AGG + chr3_2:34761174-34761193 Msa0404070:CDS 50.0%
! GCATAATCTGGCGCTGAGAT+GGG - chr3_2:34761228-34761247 None:intergenic 50.0%
! AGCATAATCTGGCGCTGAGA+TGG - chr3_2:34761229-34761248 None:intergenic 50.0%
! GCTTTTCTCTGCAACCATGC+CGG + chr3_2:34761246-34761265 Msa0404070:CDS 50.0%
! CTTTTCTCTGCAACCATGCC+GGG + chr3_2:34761247-34761266 Msa0404070:CDS 50.0%
GACAACTTCTTGACCCAACC+CGG - chr3_2:34761268-34761287 None:intergenic 50.0%
GGTCTTCCCACCATTTGCAT+AGG - chr3_2:34762411-34762430 None:intergenic 50.0%
AAGCAACGTCGGTAGCAACA+AGG - chr3_2:34762580-34762599 None:intergenic 50.0%
TAGTCCACGAGAAGCAACGT+CGG - chr3_2:34762591-34762610 None:intergenic 50.0%
! CTTTTCCTGCACGTCCAGTA+CGG - chr3_2:34763386-34763405 None:intergenic 50.0%
ACTGGACGTGCAGGAAAAGA+AGG + chr3_2:34763387-34763406 Msa0404070:CDS 50.0%
GATCTTCGTCTTCAGGCTCT+AGG + chr3_2:34763667-34763686 Msa0404070:CDS 50.0%
TTAAAACCGGTGGGGATGAC+TGG + chr3_2:34763703-34763722 Msa0404070:CDS 50.0%
! GATGACTGGCTAACTGGAAC+TGG + chr3_2:34763717-34763736 Msa0404070:CDS 50.0%
CTTCGTCGTCATCAGGTTCT+AGG + chr3_2:34763778-34763797 Msa0404070:CDS 50.0%
!! TCATCAGGTTCTAGGGAGAG+AGG + chr3_2:34763786-34763805 Msa0404070:CDS 50.0%
TTGGAGGTAGACGATCAAGC+GGG + chr3_2:34763838-34763857 Msa0404070:intron 50.0%
TGAACCACTTAGGCCATCAC+TGG - chr3_2:34764144-34764163 None:intergenic 50.0%
AGGAGCGGCAAGGAAGGATA+AGG - chr3_2:34760174-34760193 None:intergenic 55.0%
GGTTTCGAGAGGAGAAGGAG+CGG - chr3_2:34760189-34760208 None:intergenic 55.0%
GTTAGGACGGAGACGGAGAA+GGG - chr3_2:34760317-34760336 None:intergenic 55.0%
!! AGGTGAGGATAGGAGCGTTG+GGG - chr3_2:34760384-34760403 None:intergenic 55.0%
!! GAGGTGAGGATAGGAGCGTT+GGG - chr3_2:34760385-34760404 None:intergenic 55.0%
! AGAGGTGAGGATAGGAGCGT+TGG - chr3_2:34760386-34760405 None:intergenic 55.0%
TGCTGACGGCAACAGGAACA+TGG - chr3_2:34760459-34760478 None:intergenic 55.0%
!! GCTGACCAGATGCTTGCTGT+TGG + chr3_2:34761166-34761185 Msa0404070:CDS 55.0%
! AATCTGGCGCTGAGATGGGA+TGG - chr3_2:34761224-34761243 None:intergenic 55.0%
TTAGAACCGGTGGGGATGAC+TGG + chr3_2:34763601-34763620 Msa0404070:CDS 55.0%
ACTGGAGGTGGACGATCAAG+TGG + chr3_2:34763627-34763646 Msa0404070:CDS 55.0%
CTGGAGGTGGACGATCAAGT+GGG + chr3_2:34763628-34763647 Msa0404070:CDS 55.0%
!! TCAGGCTCTAGGGATCAGAG+AGG + chr3_2:34763678-34763697 Msa0404070:CDS 55.0%
AGTTAGCCAGTCATCCCCAC+CGG - chr3_2:34763712-34763731 None:intergenic 55.0%
! GACTGGCTAACTGGAACTGG+AGG + chr3_2:34763720-34763739 Msa0404070:CDS 55.0%
TGGCTAACTGGAACTGGAGG+TGG + chr3_2:34763723-34763742 Msa0404070:CDS 55.0%
ACTGGAGGTGGACGATCAAG+TGG + chr3_2:34763627-34763646 Msa0404070:CDS 55.0%
CTGGAGGTGGACGATCAAGT+GGG + chr3_2:34763628-34763647 Msa0404070:CDS 55.0%
!!! GGAGGGGCCTGTTTTAGTTG+TGG + chr3_2:34764016-34764035 Msa0404070:CDS 55.0%
GTTGTGGACAACCAGGGCAT+CGG + chr3_2:34764032-34764051 Msa0404070:CDS 55.0%
! TTGTGGACAACCAGGGCATC+GGG + chr3_2:34764033-34764052 Msa0404070:CDS 55.0%
GCATCCAGTGATGGCCTAAG+TGG + chr3_2:34764137-34764156 Msa0404070:CDS 55.0%
GGTCCATGTGCATAGTGAGC+AGG - chr3_2:34764543-34764562 None:intergenic 55.0%
AGGAGAAGGAGCGGCAAGGA+AGG - chr3_2:34760180-34760199 None:intergenic 60.0%
GGTTAGGACGGAGACGGAGA+AGG - chr3_2:34760318-34760337 None:intergenic 60.0%
!! GGTGAGGATAGGAGCGTTGG+GGG - chr3_2:34760383-34760402 None:intergenic 60.0%
!! TCCCAGTGCCGGTCTTTGCA+CGG - chr3_2:34760706-34760725 None:intergenic 60.0%
TCTCTGCAACCATGCCGGGT+TGG + chr3_2:34761251-34761270 Msa0404070:CDS 60.0%
CTCTGCAACCATGCCGGGTT+GGG + chr3_2:34761252-34761271 Msa0404070:CDS 60.0%
CTTCTTGACCCAACCCGGCA+TGG - chr3_2:34761263-34761282 None:intergenic 60.0%
GCTACCGACGTTGCTTCTCG+TGG + chr3_2:34762584-34762603 Msa0404070:CDS 60.0%
GTACATCGCTCTGGCCGTAC+TGG + chr3_2:34763369-34763388 Msa0404070:CDS 60.0%
GCAGCCTACTTCGCGCTCAA+AGG - chr3_2:34763460-34763479 None:intergenic 60.0%
AGTTCGCCAGTCATCCCCAC+CGG - chr3_2:34763610-34763629 None:intergenic 60.0%
GATGACTGGCGAACTGGAGG+TGG + chr3_2:34763615-34763634 Msa0404070:CDS 60.0%
! GGTGGGGATGACTGGCTAAC+TGG + chr3_2:34763711-34763730 Msa0404070:CDS 60.0%
CGAGAGGAGAAGGAGCGGCA+AGG - chr3_2:34760184-34760203 None:intergenic 65.0%
!! GAGGATAGGAGCGTTGGGGG+TGG - chr3_2:34760380-34760399 None:intergenic 65.0%
!! CCCAGTGCCGGTCTTTGCAC+GGG - chr3_2:34760705-34760724 None:intergenic 65.0%
CCCGTGCAAAGACCGGCACT+GGG + chr3_2:34760702-34760721 Msa0404070:CDS 65.0%
TCTGGCCGTACTGGACGTGC+AGG + chr3_2:34763378-34763397 Msa0404070:CDS 65.0%
GGTGGGGATGACTGGCGAAC+TGG + chr3_2:34763609-34763628 Msa0404070:CDS 65.0%
GGGGATGACTGGCGAACTGG+AGG + chr3_2:34763612-34763631 Msa0404070:CDS 65.0%
CAATCTGACGCCCGATGCCC+TGG - chr3_2:34764046-34764065 None:intergenic 65.0%
GCCCGTGCAAAGACCGGCAC+TGG + chr3_2:34760701-34760720 Msa0404070:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 34760132 34764598 34760132 ID=Msa0404070;Name=Msa0404070
chr3_2 mRNA 34760132 34764598 34760132 ID=Msa0404070-mRNA-1;Parent=Msa0404070;Name=Msa0404070-mRNA-1;_AED=0.05;_eAED=0.09;_QI=85|0.83|0.85|1|1|1|7|426|634
chr3_2 exon 34760132 34760570 34760132 ID=Msa0404070-mRNA-1:exon:7060;Parent=Msa0404070-mRNA-1
chr3_2 exon 34760659 34760789 34760659 ID=Msa0404070-mRNA-1:exon:7061;Parent=Msa0404070-mRNA-1
chr3_2 exon 34760910 34761324 34760910 ID=Msa0404070-mRNA-1:exon:7062;Parent=Msa0404070-mRNA-1
chr3_2 exon 34761902 34762000 34761902 ID=Msa0404070-mRNA-1:exon:7063;Parent=Msa0404070-mRNA-1
chr3_2 exon 34762407 34762631 34762407 ID=Msa0404070-mRNA-1:exon:7064;Parent=Msa0404070-mRNA-1
chr3_2 exon 34763330 34763843 34763330 ID=Msa0404070-mRNA-1:exon:7065;Parent=Msa0404070-mRNA-1
chr3_2 exon 34764006 34764598 34764006 ID=Msa0404070-mRNA-1:exon:7066;Parent=Msa0404070-mRNA-1
chr3_2 five_prime_UTR 34760132 34760216 34760132 ID=Msa0404070-mRNA-1:five_prime_utr;Parent=Msa0404070-mRNA-1
chr3_2 CDS 34760217 34760570 34760217 ID=Msa0404070-mRNA-1:cds;Parent=Msa0404070-mRNA-1
chr3_2 CDS 34760659 34760789 34760659 ID=Msa0404070-mRNA-1:cds;Parent=Msa0404070-mRNA-1
chr3_2 CDS 34760910 34761324 34760910 ID=Msa0404070-mRNA-1:cds;Parent=Msa0404070-mRNA-1
chr3_2 CDS 34761902 34762000 34761902 ID=Msa0404070-mRNA-1:cds;Parent=Msa0404070-mRNA-1
chr3_2 CDS 34762407 34762631 34762407 ID=Msa0404070-mRNA-1:cds;Parent=Msa0404070-mRNA-1
chr3_2 CDS 34763330 34763843 34763330 ID=Msa0404070-mRNA-1:cds;Parent=Msa0404070-mRNA-1
chr3_2 CDS 34764006 34764172 34764006 ID=Msa0404070-mRNA-1:cds;Parent=Msa0404070-mRNA-1
chr3_2 three_prime_UTR 34764173 34764598 34764173 ID=Msa0404070-mRNA-1:three_prime_utr;Parent=Msa0404070-mRNA-1
Gene Sequence

>Msa0404070

ATGGCTTCTTCCATCGGAACTTCTTCCATAAACAAAACCCAACTTCTCAATACACCAACTTCATTTTCACTCTACAACACCACTTCCCGTCTAAACACCCTTCTCCGTCTCCGTCCTAACCACAAAACCCCCACAGTTTCCTTCGTTATTTCTGCTATTGCCACCCCCAACGCTCCTATCCTCACCTCTCAAGAAGCCTTCAAGGGTTTTGCTTTCGATGACGCTAACGACCAACTTAGCCATGTTCCTGTTGCCGTCAGCAAAAACGAACTTGATATTTCCAAGCTTGGTTTTCCTTCTCAGCTTGTTGACTCACTTCAGAGACGTGGAATTACTAAACTTTTCCCCATTCAGAGAGCTGTGTTGCTGCCTGCATTAGAAGGTAGAGATATCATTGCCCGTGCAAAGACCGGCACTGGGAAGACATTAGCATTTGGAATTCCAATTATCAAGGGTCTCACTGAGAATGAACAAAGCAATATGAGGCGGTCTGGTCGGCTTCCTAAAGTACTGGTCCTTGCACCAACTAGGGAGTTAGCAAAGCAAGTAGAGAAGGAGATAAAAGAATCTGCACCTTATTTAAACACGGTTTGTGTTTATGGTGGTGTTTCTTATGATATTCAGAGGAATGCACTTTCACGTGGTGTTGATGTTGTGGTTGGAACACCTGGGAGACTAATTGACCTCATAAATGGGAGAACCCTTAAACTTAGTGAAATTCAGTATTTGGTACTTGATGAAGCTGACCAGATGCTTGCTGTTGGGTTTGAGGAGAATGTCGAAGAAATTTTAGAAACCATCCCATCTCAGCGCCAGATTATGCTTTTCTCTGCAACCATGCCGGGTTGGGTCAAGAAGTTGTCAAGAAAACATTTAAACAATCCATTGACTATTGATTTGGTCGGTGACAGAGAAGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTGTATCAGCCACTTCAACATCAAAGCGGAGAATTCTTTATGGTCTTATAAGTGCCTATGCAAATGGTGGGAAGACCATTGTTTTTACACGGACAAAAAGGGATGCGGATGAAATATCATTGTCACTAACAAATAGCATAGCTTCTAAACCACTACATGGTGATATCTCTCAGTATCAGAGAGAGAAAACATTGAATGGTTTTCGGCAAGGAAGATTCACAGTCCTTGTTGCTACCGACGTTGCTTCTCGTGGACTAGATATTCCCAATGTTGATTTGATTATACATTATGAACTTCCCGATGGTCCTGAGACTTTTGTACATCGCTCTGGCCGTACTGGACGTGCAGGAAAAGAAGGTACAGCTGTTGTAATGTACACCACTTCCCAGAAAAGAACTGTTATATCCTTTGAGCGCGAAGTAGGCTGCACGTTTGAATTTATTAGTCCACCACCTATGCAAGATTTACCCGAATCATCTACCAGGCAAGTTGTTCCTACACTTGATAGAGATAGAAGTAATTATAGAGGATCTAGGGATCAAAGTGGTTTTAGAACCGGTGGGGATGACTGGCGAACTGGAGGTGGACGATCAAGTGGGTATTCCTCATCAAACAGATCTTCGTCTTCAGGCTCTAGGGATCAGAGAGGTTTTAAAACCGGTGGGGATGACTGGCTAACTGGAACTGGAGGTGGACGATCAAGTGGGTATTCATCATCAAACAGATCTTCGTCGTCATCAGGTTCTAGGGAGAGAGGTTTTAAAACCAGTGGTGATGACTGGTTAATTGGAGAGGTAGTTATGGAGGGGCCTGTTTTAGTTGTGGACAACCAGGGCATCGGGCGTCAGATTGTCCCAATTAACGGTACTTCTCTTAGTTGGAACACATTCAATTTTGGCGTCACCTTGTTCAAGAATTCAGCTGCATCCAGTGATGGCCTAAGTGGTTCAAGAAATTGA
Protein sequence

>Msa0404070

MASSIGTSSINKTQLLNTPTSFSLYNTTSRLNTLLRLRPNHKTPTVSFVISAIATPNAPILTSQEAFKGFAFDDANDQLSHVPVAVSKNELDISKLGFPSQLVDSLQRRGITKLFPIQRAVLLPALEGRDIIARAKTGTGKTLAFGIPIIKGLTENEQSNMRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYDIQRNALSRGVDVVVGTPGRLIDLINGRTLKLSEIQYLVLDEADQMLAVGFEENVEEILETIPSQRQIMLFSATMPGWVKKLSRKHLNNPLTIDLVGDREEKLAEGIKLYAVSATSTSKRRILYGLISAYANGGKTIVFTRTKRDADEISLSLTNSIASKPLHGDISQYQREKTLNGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGTAVVMYTTSQKRTVISFEREVGCTFEFISPPPMQDLPESSTRQVVPTLDRDRSNYRGSRDQSGFRTGGDDWRTGGGRSSGYSSSNRSSSSGSRDQRGFKTGGDDWLTGTGGGRSSGYSSSNRSSSSSGSRERGFKTSGDDWLIGEVVMEGPVLVVDNQGIGRQIVPINGTSLSWNTFNFGVTLFKNSAASSDGLSGSRN*