Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358960 | AES97196.2 | 86.806 | 144 | 19 | 0 | 8 | 151 | 29 | 172 | 2.38e-84 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358960 | sp|Q8LLR2|MADS2_VITVI | 47.586 | 145 | 72 | 2 | 8 | 150 | 101 | 243 | 9.78e-37 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358960 | G7JX16 | 86.806 | 144 | 19 | 0 | 8 | 151 | 29 | 172 | 1.14e-84 | 255 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0358960 | 0.808052 | 3.742763e-50 | -8.615850e-47 |
| Msa0157290 | Msa0358960 | 0.807908 | 4.016447e-50 | -8.615850e-47 |
| Msa0224780 | Msa0358960 | 0.803907 | 2.785756e-49 | -8.615850e-47 |
| Msa0358960 | Msa0637540 | 0.812806 | 3.522352e-51 | -8.615850e-47 |
| Msa0358960 | Msa0880140 | 0.803469 | 3.435533e-49 | -8.615850e-47 |
| Msa0358960 | Msa0909140 | 0.806586 | 7.656224e-50 | -8.615850e-47 |
| Msa0358960 | Msa1081330 | 0.805636 | 1.212840e-49 | -8.615850e-47 |
| Msa0358960 | Msa1438250 | 0.802161 | 6.396490e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358960 | MtrunA17_Chr5g0420091 | 86.957 | 115 | 15 | 0 | 8 | 122 | 101 | 215 | 4.48e-67 | 202 |
| Msa0358960 | MtrunA17_Chr6g0455511 | 45.390 | 141 | 70 | 2 | 17 | 150 | 109 | 249 | 5.67e-32 | 114 |
| Msa0358960 | MtrunA17_Chr7g0220111 | 42.667 | 150 | 78 | 4 | 8 | 150 | 100 | 248 | 1.48e-29 | 108 |
| Msa0358960 | MtrunA17_Chr8g0377551 | 41.912 | 136 | 72 | 2 | 17 | 150 | 49 | 179 | 1.85e-25 | 95.5 |
| Msa0358960 | MtrunA17_Chr3g0122251 | 39.416 | 137 | 76 | 2 | 17 | 150 | 113 | 245 | 7.78e-24 | 93.2 |
| Msa0358960 | MtrunA17_Chr4g0061671 | 56.061 | 66 | 29 | 0 | 17 | 82 | 108 | 173 | 2.37e-16 | 72.0 |
| Msa0358960 | MtrunA17_Chr2g0308271 | 47.692 | 65 | 34 | 0 | 17 | 81 | 81 | 145 | 5.54e-11 | 58.2 |
| Msa0358960 | MtrunA17_Chr7g0220121 | 33.607 | 122 | 58 | 2 | 8 | 129 | 99 | 197 | 9.27e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358960 | AT5G15800.1 | 44.000 | 150 | 77 | 2 | 8 | 150 | 101 | 250 | 1.52e-29 | 108 |
| Msa0358960 | AT3G02310.1 | 42.282 | 149 | 80 | 4 | 8 | 150 | 101 | 249 | 5.95e-28 | 104 |
| Msa0358960 | AT2G03710.2 | 42.953 | 149 | 68 | 5 | 17 | 150 | 110 | 256 | 2.78e-27 | 102 |
| Msa0358960 | AT2G03710.1 | 42.667 | 150 | 68 | 5 | 17 | 150 | 110 | 257 | 4.11e-27 | 102 |
| Msa0358960 | AT5G15800.2 | 40.994 | 161 | 77 | 3 | 8 | 150 | 101 | 261 | 3.38e-26 | 100 |
| Msa0358960 | AT1G24260.1 | 40.580 | 138 | 72 | 4 | 17 | 150 | 112 | 243 | 1.48e-21 | 87.4 |
| Msa0358960 | AT1G24260.2 | 40.580 | 138 | 72 | 4 | 17 | 150 | 113 | 244 | 1.54e-21 | 87.4 |
| Msa0358960 | AT2G03710.3 | 60.317 | 63 | 25 | 0 | 17 | 79 | 110 | 172 | 4.70e-18 | 77.0 |
| Msa0358960 | AT3G02310.2 | 47.191 | 89 | 45 | 1 | 8 | 94 | 101 | 189 | 5.69e-15 | 69.3 |
| Msa0358960 | AT1G24260.3 | 35.971 | 139 | 63 | 5 | 17 | 150 | 113 | 230 | 1.47e-14 | 68.6 |
| Msa0358960 | AT2G45650.1 | 32.192 | 146 | 85 | 5 | 17 | 150 | 108 | 251 | 2.31e-14 | 68.6 |
| Msa0358960 | AT5G60910.2 | 44.615 | 65 | 36 | 0 | 17 | 81 | 48 | 112 | 5.04e-11 | 58.2 |
| Msa0358960 | AT5G60910.1 | 44.615 | 65 | 36 | 0 | 17 | 81 | 110 | 174 | 7.68e-11 | 58.5 |
Find 36 sgRNAs with CRISPR-Local
Find 359 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAATAGTACATTGCAAAT+TGG | 0.194316 | 3_1:-45676711 | Msa0358960:CDS |
| TCACCCTGTAGGAACTTTCT+TGG | 0.302878 | 3_1:-45681771 | Msa0358960:CDS |
| GAACTTTCTTGGAGAAGAAT+TGG | 0.314870 | 3_1:-45681760 | Msa0358960:CDS |
| GTTTGACCTGATTGTCTTCA+AGG | 0.326548 | 3_1:+45681686 | None:intergenic |
| GCAATAGTACATTGCAAATT+GGG | 0.349342 | 3_1:-45676710 | Msa0358960:intron |
| TAATAATATTCTGAGGAATA+AGG | 0.350512 | 3_1:-45680319 | Msa0358960:intron |
| TTCAACCAACATGGGAATCT+AGG | 0.356579 | 3_1:-45676797 | Msa0358960:CDS |
| ACTCTTCCTTGAAGACAATC+AGG | 0.408503 | 3_1:-45681692 | Msa0358960:CDS |
| GCATATGCTTGATCAACTTA+AGG | 0.414052 | 3_1:-45680463 | Msa0358960:CDS |
| TCTCTACAGCTACAATTCTT+CGG | 0.421665 | 3_1:-45676625 | Msa0358960:intron |
| TAGATTCCCATGTTGGTTGA+AGG | 0.421761 | 3_1:+45676799 | None:intergenic |
| CCATCCATGCATGAAGTCAT+TGG | 0.440894 | 3_1:+45676557 | None:intergenic |
| TGGAGAAGAATTGGAGCAGT+TGG | 0.442612 | 3_1:-45681751 | Msa0358960:CDS |
| TGCTCCCTAGATTCCCATGT+TGG | 0.454165 | 3_1:+45676792 | None:intergenic |
| TTCTCCAAGAAAGTTCCTAC+AGG | 0.462648 | 3_1:+45681767 | None:intergenic |
| TCTCATAGTATCCCTCTGAT+TGG | 0.469269 | 3_1:+45676742 | None:intergenic |
| TTGGTGAGGGTGGCCGCTAT+AGG | 0.471675 | 3_1:+45676761 | None:intergenic |
| ATAATATATCTTCACCCTGT+AGG | 0.516736 | 3_1:-45681782 | Msa0358960:CDS |
| AATGAATCAAGTGGAGCTGC+AGG | 0.520878 | 3_1:-45676597 | Msa0358960:CDS |
| TCAACCAACATGGGAATCTA+GGG | 0.541541 | 3_1:-45676796 | Msa0358960:CDS |
| AGATTCCCATGTTGGTTGAA+GGG | 0.544438 | 3_1:+45676800 | None:intergenic |
| TAGTATCCCTCTGATTGGTG+AGG | 0.550539 | 3_1:+45676747 | None:intergenic |
| CCAATGACTTCATGCATGGA+TGG | 0.554811 | 3_1:-45676557 | Msa0358960:CDS |
| ATGTGACCCTTCAACCAACA+TGG | 0.565726 | 3_1:-45676806 | Msa0358960:CDS |
| AGTATCCCTCTGATTGGTGA+GGG | 0.574581 | 3_1:+45676748 | None:intergenic |
| GTCATTGGCATTATGAGATG+AGG | 0.583109 | 3_1:+45676572 | None:intergenic |
| ATCCCTCTGATTGGTGAGGG+TGG | 0.605668 | 3_1:+45676751 | None:intergenic |
| CGGCCACCCTCACCAATCAG+AGG | 0.609607 | 3_1:-45676754 | Msa0358960:CDS |
| AATGCCAATGACTTCATGCA+TGG | 0.610298 | 3_1:-45676561 | Msa0358960:CDS |
| TCGGCGTTAAATGAATCAAG+TGG | 0.618267 | 3_1:-45676606 | Msa0358960:CDS |
| GAAGACAATCAGGTCAAACA+AGG | 0.622192 | 3_1:-45681682 | Msa0358960:intron |
| TAGAAACTAATAATATTCTG+AGG | 0.626809 | 3_1:-45680326 | Msa0358960:CDS |
| GGCCACCCTCACCAATCAGA+GGG | 0.631465 | 3_1:-45676753 | Msa0358960:CDS |
| GAGCAAAATGCAACCTATAG+CGG | 0.635991 | 3_1:-45676774 | Msa0358960:CDS |
| TGTGACCCTTCAACCAACAT+GGG | 0.648603 | 3_1:-45676805 | Msa0358960:CDS |
| TCTCCAAGAAAGTTCCTACA+GGG | 0.662480 | 3_1:+45681768 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTATTATTAAAAA+AGG | - | chr3_1:45677248-45677267 | Msa0358960:intron | 0.0% |
| !! | TATTAATAAAACCTAAATTA+AGG | - | chr3_1:45677025-45677044 | Msa0358960:intron | 10.0% |
| !! | TTTAATGTTTATAGATTAAA+TGG | + | chr3_1:45677097-45677116 | None:intergenic | 10.0% |
| !! | ATAAAAAAAATAAATCAGAT+TGG | - | chr3_1:45677308-45677327 | Msa0358960:intron | 10.0% |
| !! | AAAGAATAATTACTAAATTT+AGG | + | chr3_1:45677690-45677709 | None:intergenic | 10.0% |
| !!! | TTTTTTTGTTTTTTTTGAAT+TGG | + | chr3_1:45678539-45678558 | None:intergenic | 10.0% |
| !!! | GTTTTTTTTTTCATTTTTAT+TGG | - | chr3_1:45679214-45679233 | Msa0358960:intron | 10.0% |
| !!! | TTTTATTAATAAAGAGATCA+TGG | + | chr3_1:45677016-45677035 | None:intergenic | 15.0% |
| !! | TCAATAATTAACCTTAATTT+AGG | + | chr3_1:45677039-45677058 | None:intergenic | 15.0% |
| !! | ATAAAAAAACAAACAAATCA+AGG | + | chr3_1:45677467-45677486 | None:intergenic | 15.0% |
| !!! | AAATATGCATTCTTTTATAA+AGG | - | chr3_1:45678178-45678197 | Msa0358960:intron | 15.0% |
| !!! | ATAAGTATGCAATTTATTTT+AGG | - | chr3_1:45678711-45678730 | Msa0358960:intron | 15.0% |
| !!! | TAAGTATGCAATTTATTTTA+GGG | - | chr3_1:45678712-45678731 | Msa0358960:intron | 15.0% |
| !! | AATTATCTCTAATAATCAAT+CGG | - | chr3_1:45678904-45678923 | Msa0358960:intron | 15.0% |
| !! | AAAATGAAAAAAAAAACCAA+TGG | + | chr3_1:45679211-45679230 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCATTTTTATTGG+TGG | - | chr3_1:45679217-45679236 | Msa0358960:intron | 15.0% |
| !!! | AATGAAGTATTAAATGATTA+AGG | - | chr3_1:45679566-45679585 | Msa0358960:intron | 15.0% |
| !! | TAAATGATTAAGGTTATTAT+AGG | - | chr3_1:45679576-45679595 | Msa0358960:intron | 15.0% |
| !!! | TTTTCATGGATATTATTATT+TGG | - | chr3_1:45680516-45680535 | Msa0358960:intron | 15.0% |
| !!! | TTTTTTATGAGTTTTTTAAG+TGG | - | chr3_1:45680673-45680692 | Msa0358960:intron | 15.0% |
| !! | ATAGGAAAAGAAATATTTAT+AGG | + | chr3_1:45681313-45681332 | None:intergenic | 15.0% |
| !!! | TTTGTTTTATGATTTTGTTT+TGG | - | chr3_1:45681403-45681422 | Msa0358960:intron | 15.0% |
| !!! | AAGTTTAATTTTGTTTTCAT+TGG | - | chr3_1:45681465-45681484 | Msa0358960:intron | 15.0% |
| !!! | AGTTTAATTTTGTTTTCATT+GGG | - | chr3_1:45681466-45681485 | Msa0358960:intron | 15.0% |
| !!! | ACAAACATTTTCAATAATTA+GGG | + | chr3_1:45681686-45681705 | None:intergenic | 15.0% |
| !!! | GACTCTTTTAATGAATATTT+AGG | + | chr3_1:45676925-45676944 | None:intergenic | 20.0% |
| !! | TAAATCACTTATATGTCATT+AGG | - | chr3_1:45677135-45677154 | Msa0358960:intron | 20.0% |
| !! | TTTGTAAGTTATTAATGTCA+TGG | - | chr3_1:45677183-45677202 | Msa0358960:intron | 20.0% |
| !! | ATTAAAAAAGGATCTTATGT+TGG | - | chr3_1:45677260-45677279 | Msa0358960:intron | 20.0% |
| !!! | ATTATCTTTTCATATTGTGA+AGG | - | chr3_1:45677339-45677358 | Msa0358960:intron | 20.0% |
| !!! | TTTGTATTCGTGATATTTTT+TGG | + | chr3_1:45677525-45677544 | None:intergenic | 20.0% |
| !! | AAAAAATATCACGAATACAA+AGG | - | chr3_1:45677524-45677543 | Msa0358960:intron | 20.0% |
| !! | AAAAATATCACGAATACAAA+GGG | - | chr3_1:45677525-45677544 | Msa0358960:intron | 20.0% |
| !!! | ATTTTTGAATAGGTGTAATT+CGG | - | chr3_1:45677589-45677608 | Msa0358960:intron | 20.0% |
| !! | ATGATATAGAAAATCAAACA+AGG | + | chr3_1:45677940-45677959 | None:intergenic | 20.0% |
| !! | TAGAAACTAATAATATTCTG+AGG | - | chr3_1:45678032-45678051 | Msa0358960:intron | 20.0% |
| !!! | TAATAATATTCTGAGGAATA+AGG | - | chr3_1:45678039-45678058 | Msa0358960:intron | 20.0% |
| !! | AAATTTGTAGCTACAAATTT+AGG | + | chr3_1:45678213-45678232 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTCAAAATCATAG+AGG | + | chr3_1:45678460-45678479 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGAATTGGTAGAT+TGG | + | chr3_1:45678531-45678550 | None:intergenic | 20.0% |
| !! | AATCTATTAAATATGCAAAG+AGG | + | chr3_1:45678675-45678694 | None:intergenic | 20.0% |
| !! | AAATAAATTGCATACTTATG+AGG | + | chr3_1:45678710-45678729 | None:intergenic | 20.0% |
| !!! | AAAGGAATGTCTAATTTTAA+AGG | - | chr3_1:45679002-45679021 | Msa0358960:intron | 20.0% |
| !! | TAAATGTATAAGGGTAATAT+AGG | + | chr3_1:45679524-45679543 | None:intergenic | 20.0% |
| !! | TCAAAATGTGACAATTAAAA+AGG | - | chr3_1:45679662-45679681 | Msa0358960:intron | 20.0% |
| !!! | AGCTAAATTCTTTGAAAAAT+AGG | - | chr3_1:45679810-45679829 | Msa0358960:intron | 20.0% |
| !! | ATAAAATATGTTGGGTAAAA+TGG | - | chr3_1:45679965-45679984 | Msa0358960:intron | 20.0% |
| !! | TAAAATATGTTGGGTAAAAT+GGG | - | chr3_1:45679966-45679985 | Msa0358960:intron | 20.0% |
| !!! | AATTTTCTTCTTTCATTCTT+TGG | - | chr3_1:45680471-45680490 | Msa0358960:CDS | 20.0% |
| !! | TAAGAGCAATGTTATTAATT+TGG | - | chr3_1:45680774-45680793 | Msa0358960:intron | 20.0% |
| !!! | TGATCAAATTTTCAACTAAA+AGG | - | chr3_1:45680823-45680842 | Msa0358960:intron | 20.0% |
| !! | ATTCAATCAAAAGGATATAA+TGG | - | chr3_1:45680870-45680889 | Msa0358960:intron | 20.0% |
| !! | TTCAATCAAAAGGATATAAT+GGG | - | chr3_1:45680871-45680890 | Msa0358960:intron | 20.0% |
| !! | TTATACTTCATCAATTGTAA+CGG | - | chr3_1:45681036-45681055 | Msa0358960:intron | 20.0% |
| !! | TAAGATGAGATAACTATAAA+GGG | + | chr3_1:45681069-45681088 | None:intergenic | 20.0% |
| !! | ATAAGATGAGATAACTATAA+AGG | + | chr3_1:45681070-45681089 | None:intergenic | 20.0% |
| !! | GAATTTCACTAATTTATTTG+AGG | - | chr3_1:45681135-45681154 | Msa0358960:intron | 20.0% |
| !! | AAAATGAAGTACAACAATTA+TGG | - | chr3_1:45681255-45681274 | Msa0358960:intron | 20.0% |
| !! | AAATGAAGTACAACAATTAT+GGG | - | chr3_1:45681256-45681275 | Msa0358960:intron | 20.0% |
| !!! | AATATTTCTTTTCCTATTGA+TGG | - | chr3_1:45681316-45681335 | Msa0358960:intron | 20.0% |
| !!! | GACAAACATTTTCAATAATT+AGG | + | chr3_1:45681687-45681706 | None:intergenic | 20.0% |
| !!! | GGTAATTCTAGTTTTATGAT+TGG | + | chr3_1:45677076-45677095 | None:intergenic | 25.0% |
| ! | ACTAAGAAGAAGATGTAAAA+GGG | - | chr3_1:45677217-45677236 | Msa0358960:intron | 25.0% |
| ! | TCATAACAGTTCAAAACTTA+TGG | + | chr3_1:45677421-45677440 | None:intergenic | 25.0% |
| ! | AAAATATCACGAATACAAAG+GGG | - | chr3_1:45677526-45677545 | Msa0358960:intron | 25.0% |
| !! | TATTCAAAAATGTTCTAGGT+TGG | + | chr3_1:45677580-45677599 | None:intergenic | 25.0% |
| !! | AACCTAGAACATTTTTGAAT+AGG | - | chr3_1:45677579-45677598 | Msa0358960:intron | 25.0% |
| !! | TTTTTGAATAGGTGTAATTC+GGG | - | chr3_1:45677590-45677609 | Msa0358960:intron | 25.0% |
| ! | AAATTGTGCATTTAATGCAT+TGG | + | chr3_1:45677736-45677755 | None:intergenic | 25.0% |
| ! | ACTTAAGGATTTGCAAAAAA+AGG | - | chr3_1:45677910-45677929 | Msa0358960:intron | 25.0% |
| ! | AATACATAGCATGTACTTAT+TGG | - | chr3_1:45677965-45677984 | Msa0358960:intron | 25.0% |
| ! | GCATATTTCAAAAATTGCTA+AGG | + | chr3_1:45678166-45678185 | None:intergenic | 25.0% |
| ! | TTGTAACTTCAACAAAATCA+TGG | - | chr3_1:45678489-45678508 | Msa0358960:intron | 25.0% |
| ! | GTACACTATTCAATTTCATT+AGG | + | chr3_1:45678608-45678627 | None:intergenic | 25.0% |
| ! | ATCTAGCTAAAAGGAAAAAA+AGG | - | chr3_1:45678984-45679003 | Msa0358960:intron | 25.0% |
| !!! | TATTCTCAGTTTTGTTGTTT+TGG | - | chr3_1:45679130-45679149 | Msa0358960:intron | 25.0% |
| ! | AAGTGACAATTATAAAGGAA+CGG | + | chr3_1:45679432-45679451 | None:intergenic | 25.0% |
| ! | TGCAAAAGTGACAATTATAA+AGG | + | chr3_1:45679437-45679456 | None:intergenic | 25.0% |
| ! | GTTCAATGTATCATTAAATG+TGG | - | chr3_1:45679493-45679512 | Msa0358960:intron | 25.0% |
| ! | TCTCTGCAATAAATGTATAA+GGG | + | chr3_1:45679533-45679552 | None:intergenic | 25.0% |
| !!! | CTTATTCGACATTTTGAAAA+AGG | + | chr3_1:45679898-45679917 | None:intergenic | 25.0% |
| !!! | CTTTTTCAAAATGTCGAATA+AGG | - | chr3_1:45679896-45679915 | Msa0358960:intron | 25.0% |
| ! | GTTAACTGATAAAATACCTT+GGG | + | chr3_1:45680428-45680447 | None:intergenic | 25.0% |
| ! | TGTTAACTGATAAAATACCT+TGG | + | chr3_1:45680429-45680448 | None:intergenic | 25.0% |
| !!! | AATAAGGGGTAATTTTTTCA+TGG | - | chr3_1:45680502-45680521 | Msa0358960:intron | 25.0% |
| !!! | ATATAATGGGAATGGTTTTT+GGG | - | chr3_1:45680884-45680903 | Msa0358960:intron | 25.0% |
| ! | AACCATTCATAATAGATACA+CGG | + | chr3_1:45680926-45680945 | None:intergenic | 25.0% |
| !!! | CATAAGATTGGTCATTTTTT+GGG | - | chr3_1:45680999-45681018 | Msa0358960:intron | 25.0% |
| ! | TCCAATTTCATCTTCAAATT+TGG | - | chr3_1:45681370-45681389 | Msa0358960:intron | 25.0% |
| ! | TCCAAATTTGAAGATGAAAT+TGG | + | chr3_1:45681374-45681393 | None:intergenic | 25.0% |
| !!! | TTAATTTTGTTTTCATTGGG+TGG | - | chr3_1:45681469-45681488 | Msa0358960:intron | 25.0% |
| !!! | TCATTGTGAATTTTGATAGT+TGG | - | chr3_1:45681520-45681539 | Msa0358960:intron | 25.0% |
| ATAATATATCTTCACCCTGT+AGG | - | chr3_1:45676576-45676595 | Msa0358960:CDS | 30.0% | |
| GACTAAGAAGAAGATGTAAA+AGG | - | chr3_1:45677216-45677235 | Msa0358960:intron | 30.0% | |
| CACCTATTCAAAAATGTTCT+AGG | + | chr3_1:45677584-45677603 | None:intergenic | 30.0% | |
| CACTCTTTAAGCACTTTAAA+TGG | + | chr3_1:45677773-45677792 | None:intergenic | 30.0% | |
| TAATCTAGTGCAGTATCTTA+TGG | + | chr3_1:45677821-45677840 | None:intergenic | 30.0% | |
| TAAGATACTGCACTAGATTA+TGG | - | chr3_1:45677821-45677840 | Msa0358960:intron | 30.0% | |
| GCTACAAATTTAGGAATCTT+TGG | + | chr3_1:45678204-45678223 | None:intergenic | 30.0% | |
| AGAAAATGTTCTTCTCACAA+AGG | + | chr3_1:45678276-45678295 | None:intergenic | 30.0% | |
| !! | AAGAATGATTTGCTTTCTGT+AGG | - | chr3_1:45678309-45678328 | Msa0358960:intron | 30.0% |
| !! | TCATTTTGTTTCAAGTGTTG+TGG | + | chr3_1:45678568-45678587 | None:intergenic | 30.0% |
| ACTATTCAATTTCATTAGGC+TGG | + | chr3_1:45678604-45678623 | None:intergenic | 30.0% | |
| !! | TAAATATGCAAAGAGGTACT+CGG | + | chr3_1:45678668-45678687 | None:intergenic | 30.0% |
| !!! | GTATGCAATTTATTTTAGGG+TGG | - | chr3_1:45678715-45678734 | Msa0358960:intron | 30.0% |
| !! | CTCATGATTATAGCTACTTT+TGG | + | chr3_1:45678753-45678772 | None:intergenic | 30.0% |
| AAGATGTTAGCTAAAAGACT+TGG | - | chr3_1:45678865-45678884 | Msa0358960:intron | 30.0% | |
| TAGTTATCTCCCTTTAATGA+AGG | + | chr3_1:45678930-45678949 | None:intergenic | 30.0% | |
| !! | GGAATGTCTAATTTTAAAGG+TGG | - | chr3_1:45679005-45679024 | Msa0358960:intron | 30.0% |
| GTTAACAAGAGTCCAATTTA+CGG | - | chr3_1:45679152-45679171 | Msa0358960:intron | 30.0% | |
| TTAACAAGAGTCCAATTTAC+GGG | - | chr3_1:45679153-45679172 | Msa0358960:intron | 30.0% | |
| !! | TTCATTTTTATTGGTGGCAT+AGG | - | chr3_1:45679223-45679242 | Msa0358960:intron | 30.0% |
| !! | TCATTTTTATTGGTGGCATA+GGG | - | chr3_1:45679224-45679243 | Msa0358960:intron | 30.0% |
| !! | AGGGTATTTTAAAGGTTTCT+AGG | - | chr3_1:45679280-45679299 | Msa0358960:intron | 30.0% |
| TGGACGTTACATTTATTCAT+AGG | - | chr3_1:45679342-45679361 | Msa0358960:intron | 30.0% | |
| GGACGTTACATTTATTCATA+GGG | - | chr3_1:45679343-45679362 | Msa0358960:intron | 30.0% | |
| ! | GTGAGTATTTAAAGCATCTT+AGG | + | chr3_1:45679408-45679427 | None:intergenic | 30.0% |
| CTCTCTGCAATAAATGTATA+AGG | + | chr3_1:45679534-45679553 | None:intergenic | 30.0% | |
| TGACAATTAAAAAGGAACAG+AGG | - | chr3_1:45679670-45679689 | Msa0358960:intron | 30.0% | |
| GACAATTAAAAAGGAACAGA+GGG | - | chr3_1:45679671-45679690 | Msa0358960:intron | 30.0% | |
| TTTCAAAATGTCGAATAAGG+TGG | - | chr3_1:45679899-45679918 | Msa0358960:intron | 30.0% | |
| AACAATGCAAAGAAAGTTTG+TGG | - | chr3_1:45679923-45679942 | Msa0358960:intron | 30.0% | |
| ACAATGCAAAGAAAGTTTGT+GGG | - | chr3_1:45679924-45679943 | Msa0358960:intron | 30.0% | |
| TGGGGGAAAATAAAATATGT+TGG | - | chr3_1:45679956-45679975 | Msa0358960:intron | 30.0% | |
| GGGGGAAAATAAAATATGTT+GGG | - | chr3_1:45679957-45679976 | Msa0358960:intron | 30.0% | |
| TAAAATGGGAGGATGTTTAT+AGG | - | chr3_1:45679980-45679999 | Msa0358960:intron | 30.0% | |
| GTTTATAGGTCAAAATCAAG+TGG | - | chr3_1:45679994-45680013 | Msa0358960:intron | 30.0% | |
| TTCTTCTTTCATTCTTTGGT+TGG | - | chr3_1:45680475-45680494 | Msa0358960:intron | 30.0% | |
| TCTTCTTTCATTCTTTGGTT+GGG | - | chr3_1:45680476-45680495 | Msa0358960:intron | 30.0% | |
| TTCTTTGGTTGGGAAAAATA+AGG | - | chr3_1:45680486-45680505 | Msa0358960:intron | 30.0% | |
| TCTTTGGTTGGGAAAAATAA+GGG | - | chr3_1:45680487-45680506 | Msa0358960:intron | 30.0% | |
| TTATTTGGAAGATTTCCAAC+AGG | - | chr3_1:45680531-45680550 | Msa0358960:intron | 30.0% | |
| !!! | TATGAGTTTTTTAAGTGGCT+AGG | - | chr3_1:45680678-45680697 | Msa0358960:intron | 30.0% |
| TAAGTGGCTAGGTATAATTT+CGG | - | chr3_1:45680689-45680708 | Msa0358960:intron | 30.0% | |
| TAATTTGGTATTCAACGTTG+TGG | - | chr3_1:45680789-45680808 | Msa0358960:intron | 30.0% | |
| AGGTTGTAGATTCAATCAAA+AGG | - | chr3_1:45680861-45680880 | Msa0358960:intron | 30.0% | |
| ! | TCAAAAGGATATAATGGGAA+TGG | - | chr3_1:45680876-45680895 | Msa0358960:intron | 30.0% |
| !! | GATATAATGGGAATGGTTTT+TGG | - | chr3_1:45680883-45680902 | Msa0358960:intron | 30.0% |
| TTACCTTAGAAGACATTCTA+GGG | + | chr3_1:45680955-45680974 | None:intergenic | 30.0% | |
| ATTACCTTAGAAGACATTCT+AGG | + | chr3_1:45680956-45680975 | None:intergenic | 30.0% | |
| ! | TGTGAGTTTTTGCATAAGAT+TGG | - | chr3_1:45680987-45681006 | Msa0358960:intron | 30.0% |
| !!! | GCATAAGATTGGTCATTTTT+TGG | - | chr3_1:45680998-45681017 | Msa0358960:intron | 30.0% |
| !! | TTGTGAATTTTGATAGTTGG+AGG | - | chr3_1:45681523-45681542 | Msa0358960:intron | 30.0% |
| TGCAATAGTACATTGCAAAT+TGG | - | chr3_1:45681647-45681666 | Msa0358960:intron | 30.0% | |
| GCAATAGTACATTGCAAATT+GGG | - | chr3_1:45681648-45681667 | Msa0358960:intron | 30.0% | |
| GAACTTTCTTGGAGAAGAAT+TGG | - | chr3_1:45676598-45676617 | Msa0358960:CDS | 35.0% | |
| ! | ATCTTATGTTGGCTGTATAG+TGG | - | chr3_1:45677271-45677290 | Msa0358960:intron | 35.0% |
| ! | TCTTATGTTGGCTGTATAGT+GGG | - | chr3_1:45677272-45677291 | Msa0358960:intron | 35.0% |
| !! | TGGCTTTATCAACAATTCCA+AGG | + | chr3_1:45677560-45677579 | None:intergenic | 35.0% |
| !!! | TCTCCTTGAGCTACTTTTTA+AGG | - | chr3_1:45677662-45677681 | Msa0358960:intron | 35.0% |
| GATCCTTAAAAAGTAGCTCA+AGG | + | chr3_1:45677668-45677687 | None:intergenic | 35.0% | |
| GCATATGCTTGATCAACTTA+AGG | - | chr3_1:45677895-45677914 | Msa0358960:intron | 35.0% | |
| ! | TTTCCCATCTTCCTTTTTGA+TGG | - | chr3_1:45677988-45678007 | Msa0358960:intron | 35.0% |
| TGTCCATCAAAAAGGAAGAT+GGG | + | chr3_1:45677994-45678013 | None:intergenic | 35.0% | |
| ! | AAAGAGTATGTAACCTCTCT+TGG | + | chr3_1:45678337-45678356 | None:intergenic | 35.0% |
| CTATGAAATGAGTTGTTGGT+AGG | + | chr3_1:45678374-45678393 | None:intergenic | 35.0% | |
| CATTTCATAGCACGAATGTT+TGG | - | chr3_1:45678384-45678403 | Msa0358960:intron | 35.0% | |
| !! | TTTGGATTAGCACGAATGTT+TGG | - | chr3_1:45678402-45678421 | Msa0358960:intron | 35.0% |
| TTGAATAGTGTACAGCCAAA+AGG | - | chr3_1:45678615-45678634 | Msa0358960:intron | 35.0% | |
| ATTAAAAGACTCTCCAAGAG+AGG | + | chr3_1:45678834-45678853 | None:intergenic | 35.0% | |
| AATCAATCGGCCTTCATTAA+AGG | - | chr3_1:45678917-45678936 | Msa0358960:intron | 35.0% | |
| ATCAATCGGCCTTCATTAAA+GGG | - | chr3_1:45678918-45678937 | Msa0358960:intron | 35.0% | |
| AAAGGGAGATAACTAGTTGA+TGG | - | chr3_1:45678935-45678954 | Msa0358960:intron | 35.0% | |
| AAGGGAGATAACTAGTTGAT+GGG | - | chr3_1:45678936-45678955 | Msa0358960:intron | 35.0% | |
| ! | TTTCGAGAAGCCTTATGATT+TGG | - | chr3_1:45679029-45679048 | Msa0358960:intron | 35.0% |
| TTCTAGCCTATATGCTTATG+AGG | - | chr3_1:45679064-45679083 | Msa0358960:intron | 35.0% | |
| ! | TTGATGATAGATTGAGAGGT+CGG | - | chr3_1:45679094-45679113 | Msa0358960:intron | 35.0% |
| ! | AGGTTTCTAGGTAGATAACT+CGG | - | chr3_1:45679292-45679311 | Msa0358960:intron | 35.0% |
| TATCTCTCATTTGCAATGCA+TGG | - | chr3_1:45679322-45679341 | Msa0358960:intron | 35.0% | |
| !! | TTCATAGGGAATTGCTTTTG+TGG | - | chr3_1:45679357-45679376 | Msa0358960:intron | 35.0% |
| !! | TTGCTTTTGTGGAGAACTTA+TGG | - | chr3_1:45679368-45679387 | Msa0358960:intron | 35.0% |
| GGAGAACTTATGGTCAATAA+AGG | - | chr3_1:45679378-45679397 | Msa0358960:intron | 35.0% | |
| ATGTGAACTTCACGAAAAGT+AGG | - | chr3_1:45679711-45679730 | Msa0358960:intron | 35.0% | |
| TTCACGAAAAGTAGGTTGTT+TGG | - | chr3_1:45679719-45679738 | Msa0358960:intron | 35.0% | |
| ATCTTCGTAGAACACAATGT+TGG | - | chr3_1:45679772-45679791 | Msa0358960:intron | 35.0% | |
| GTAGAACACAATGTTGGAAA+TGG | - | chr3_1:45679778-45679797 | Msa0358960:intron | 35.0% | |
| ! | CTTTGAAAAATAGGCCTTCA+AGG | - | chr3_1:45679819-45679838 | Msa0358960:intron | 35.0% |
| CAATGCAAAGAAAGTTTGTG+GGG | - | chr3_1:45679925-45679944 | Msa0358960:intron | 35.0% | |
| AATATGTTGGGTAAAATGGG+AGG | - | chr3_1:45679969-45679988 | Msa0358960:intron | 35.0% | |
| ! | TTATATCCAAGTGGTAGTGA+AGG | - | chr3_1:45680058-45680077 | Msa0358960:intron | 35.0% |
| ATAATAGAAGGTTGTGCTGA+AGG | - | chr3_1:45680100-45680119 | Msa0358960:intron | 35.0% | |
| CAATCTTGATGAAACGAGTA+TGG | + | chr3_1:45680165-45680184 | None:intergenic | 35.0% | |
| CATACTCGTTTCATCAAGAT+TGG | - | chr3_1:45680163-45680182 | Msa0358960:intron | 35.0% | |
| ACATAAATCCTTCCACCATA+AGG | + | chr3_1:45680192-45680211 | None:intergenic | 35.0% | |
| TGGAAGGATTTATGTGCAAT+CGG | - | chr3_1:45680197-45680216 | Msa0358960:intron | 35.0% | |
| ! | CTTGAAAACTTTTGCTTGAG+AGG | + | chr3_1:45680280-45680299 | None:intergenic | 35.0% |
| ! | TTCATTCCACACAAGGATTT+TGG | + | chr3_1:45680321-45680340 | None:intergenic | 35.0% |
| AACAATCTTCATTCCACACA+AGG | + | chr3_1:45680328-45680347 | None:intergenic | 35.0% | |
| TTATAAGAGCTTCGTTGATG+TGG | - | chr3_1:45680346-45680365 | Msa0358960:intron | 35.0% | |
| TTTCACAATGAAAACACCCA+AGG | - | chr3_1:45680409-45680428 | Msa0358960:intron | 35.0% | |
| CTTTGGTTGGGAAAAATAAG+GGG | - | chr3_1:45680488-45680507 | Msa0358960:intron | 35.0% | |
| ATTTCCAACAGGATTCAATG+TGG | - | chr3_1:45680542-45680561 | Msa0358960:intron | 35.0% | |
| TTTCCAACAGGATTCAATGT+GGG | - | chr3_1:45680543-45680562 | Msa0358960:intron | 35.0% | |
| GCTTCTTACCTTTACTTCTA+TGG | - | chr3_1:45680733-45680752 | Msa0358960:intron | 35.0% | |
| TCTTACCTTTACTTCTATGG+TGG | - | chr3_1:45680736-45680755 | Msa0358960:intron | 35.0% | |
| CTTACCTTTACTTCTATGGT+GGG | - | chr3_1:45680737-45680756 | Msa0358960:intron | 35.0% | |
| TTTACCCACCATAGAAGTAA+AGG | + | chr3_1:45680744-45680763 | None:intergenic | 35.0% | |
| !! | TTTACTTCTATGGTGGGTAA+AGG | - | chr3_1:45680743-45680762 | Msa0358960:intron | 35.0% |
| !! | TTACTTCTATGGTGGGTAAA+GGG | - | chr3_1:45680744-45680763 | Msa0358960:intron | 35.0% |
| CTCCGTGTATCTATTATGAA+TGG | - | chr3_1:45680921-45680940 | Msa0358960:intron | 35.0% | |
| !!! | AAGATTGGTCATTTTTTGGG+AGG | - | chr3_1:45681002-45681021 | Msa0358960:intron | 35.0% |
| !!! | AGATTGGTCATTTTTTGGGA+GGG | - | chr3_1:45681003-45681022 | Msa0358960:intron | 35.0% |
| TCATGAGAGTAATTGAGGAA+AGG | - | chr3_1:45681342-45681361 | Msa0358960:intron | 35.0% | |
| AGAGTAATTGAGGAAAGGTA+GGG | - | chr3_1:45681347-45681366 | Msa0358960:intron | 35.0% | |
| TCTCTACAGCTACAATTCTT+CGG | - | chr3_1:45681733-45681752 | Msa0358960:CDS | 35.0% | |
| TCTCCAAGAAAGTTCCTACA+GGG | + | chr3_1:45676593-45676612 | None:intergenic | 40.0% | |
| TTCTCCAAGAAAGTTCCTAC+AGG | + | chr3_1:45676594-45676613 | None:intergenic | 40.0% | |
| ACTCTTCCTTGAAGACAATC+AGG | - | chr3_1:45676666-45676685 | Msa0358960:intron | 40.0% | |
| GTTTGACCTGATTGTCTTCA+AGG | + | chr3_1:45676675-45676694 | None:intergenic | 40.0% | |
| GAAGACAATCAGGTCAAACA+AGG | - | chr3_1:45676676-45676695 | Msa0358960:intron | 40.0% | |
| TATCTGTCTCCTTGTGATCA+TGG | - | chr3_1:45676954-45676973 | Msa0358960:intron | 40.0% | |
| ATCTGTCTCCTTGTGATCAT+GGG | - | chr3_1:45676955-45676974 | Msa0358960:intron | 40.0% | |
| !! | AATAGGTGTAATTCGGGTTG+AGG | - | chr3_1:45677596-45677615 | Msa0358960:intron | 40.0% |
| GCATTGGAAATTGTAGCAGT+TGG | + | chr3_1:45677720-45677739 | None:intergenic | 40.0% | |
| !! | AAAGTGCTTAAAGAGTGTCC+CGG | - | chr3_1:45677776-45677795 | Msa0358960:intron | 40.0% |
| AAAATGTTAACGAGTGCTCC+CGG | + | chr3_1:45677798-45677817 | None:intergenic | 40.0% | |
| GTGTCCATCAAAAAGGAAGA+TGG | + | chr3_1:45677995-45678014 | None:intergenic | 40.0% | |
| !! | TTCCTTTTTGATGGACACAC+AGG | - | chr3_1:45677997-45678016 | Msa0358960:intron | 40.0% |
| TTCCTGTGTGTCCATCAAAA+AGG | + | chr3_1:45678002-45678021 | None:intergenic | 40.0% | |
| ! | CACAAAGGAATCTCTAGCTT+TGG | + | chr3_1:45678261-45678280 | None:intergenic | 40.0% |
| ! | AAATGAGTTGTTGGTAGGTG+TGG | + | chr3_1:45678369-45678388 | None:intergenic | 40.0% |
| CGTGCTATGAAATGAGTTGT+TGG | + | chr3_1:45678378-45678397 | None:intergenic | 40.0% | |
| ! | ATTAGGCTGGTCAAGTGTTA+AGG | + | chr3_1:45678591-45678610 | None:intergenic | 40.0% |
| ! | ATGACTCAAGTGTGTCCTTT+TGG | + | chr3_1:45678633-45678652 | None:intergenic | 40.0% |
| GAATGAGGAGAGAGAACTTT+GGG | + | chr3_1:45678789-45678808 | None:intergenic | 40.0% | |
| TGAAATTCACCCAAGGAATG+AGG | + | chr3_1:45678804-45678823 | None:intergenic | 40.0% | |
| AATAGGGTGAAATTCACCCA+AGG | + | chr3_1:45678811-45678830 | None:intergenic | 40.0% | |
| ATTTCACCCTATTCCTCTCT+TGG | - | chr3_1:45678818-45678837 | Msa0358960:intron | 40.0% | |
| ! | AGGGAGATAACTAGTTGATG+GGG | - | chr3_1:45678937-45678956 | Msa0358960:intron | 40.0% |
| !! | AGCCTTATGATTTGGTGAGT+TGG | - | chr3_1:45679037-45679056 | Msa0358960:intron | 40.0% |
| !! | GCCTTATGATTTGGTGAGTT+GGG | - | chr3_1:45679038-45679057 | Msa0358960:intron | 40.0% |
| GCCTATATGCTTATGAGGTT+TGG | - | chr3_1:45679069-45679088 | Msa0358960:intron | 40.0% | |
| GCCAAACCTCATAAGCATAT+AGG | + | chr3_1:45679073-45679092 | None:intergenic | 40.0% | |
| ! | GGCTTTGATGATAGATTGAG+AGG | - | chr3_1:45679090-45679109 | Msa0358960:intron | 40.0% |
| ACTAATTGCCACCCGTAAAT+TGG | + | chr3_1:45679167-45679186 | None:intergenic | 40.0% | |
| ATTTACGGGTGGCAATTAGT+AGG | - | chr3_1:45679167-45679186 | Msa0358960:intron | 40.0% | |
| ATTAGTAGGTGGCTTAAACG+AGG | - | chr3_1:45679181-45679200 | Msa0358960:intron | 40.0% | |
| ! | TTATTGGTGGCATAGGGATT+AGG | - | chr3_1:45679230-45679249 | Msa0358960:intron | 40.0% |
| GATTAGGAGCTTCAATGAGA+AGG | - | chr3_1:45679246-45679265 | Msa0358960:intron | 40.0% | |
| TTAAAATACCCTAACTCCGC+CGG | + | chr3_1:45679272-45679291 | None:intergenic | 40.0% | |
| !! | GCGGAGTTAGGGTATTTTAA+AGG | - | chr3_1:45679272-45679291 | Msa0358960:intron | 40.0% |
| TTTCTAGGTAGATAACTCGG+AGG | - | chr3_1:45679295-45679314 | Msa0358960:intron | 40.0% | |
| AGGTTGTTTGGTCTACTAGT+TGG | - | chr3_1:45679731-45679750 | Msa0358960:intron | 40.0% | |
| TTCTACGAAGATGCCTTTCT+AGG | + | chr3_1:45679764-45679783 | None:intergenic | 40.0% | |
| TTAACACCACTCTACCTTGA+AGG | + | chr3_1:45679836-45679855 | None:intergenic | 40.0% | |
| ! | AAGTGGTGAGCTTTGACTAA+AGG | - | chr3_1:45680011-45680030 | Msa0358960:intron | 40.0% |
| ATCAGGCTCTTATATCCAAG+TGG | - | chr3_1:45680049-45680068 | Msa0358960:intron | 40.0% | |
| GGAGGGTGAATCATAATAGA+AGG | - | chr3_1:45680088-45680107 | Msa0358960:intron | 40.0% | |
| CATCAAGATTGGCATCCTTA+TGG | - | chr3_1:45680174-45680193 | Msa0358960:intron | 40.0% | |
| ATTTATGTGCAATCGGCTAG+TGG | - | chr3_1:45680204-45680223 | Msa0358960:intron | 40.0% | |
| !! | TTCCACACAAGGATTTTGGT+CGG | + | chr3_1:45680317-45680336 | None:intergenic | 40.0% |
| CTTCGTTGATGTGGTATCTT+CGG | - | chr3_1:45680355-45680374 | Msa0358960:intron | 40.0% | |
| ATTCAATGTGGGTTCGAGAT+GGG | - | chr3_1:45680554-45680573 | Msa0358960:intron | 40.0% | |
| CATACTAAGCACAACTTGGA+GGG | + | chr3_1:45680596-45680615 | None:intergenic | 40.0% | |
| TCATACTAAGCACAACTTGG+AGG | + | chr3_1:45680597-45680616 | None:intergenic | 40.0% | |
| TCCAAGTTGTGCTTAGTATG+AGG | - | chr3_1:45680596-45680615 | Msa0358960:intron | 40.0% | |
| CCAAGTTGTGCTTAGTATGA+GGG | - | chr3_1:45680597-45680616 | Msa0358960:intron | 40.0% | |
| CAAGTTGTGCTTAGTATGAG+GGG | - | chr3_1:45680598-45680617 | Msa0358960:intron | 40.0% | |
| TATAATTTCGGTGGTGCACT+AGG | - | chr3_1:45680701-45680720 | Msa0358960:intron | 40.0% | |
| AAAGGCTTCAAAAGTCGAAG+AGG | - | chr3_1:45680841-45680860 | Msa0358960:intron | 40.0% | |
| !!! | AATGGGAATGGTTTTTGGGT+CGG | - | chr3_1:45680888-45680907 | Msa0358960:intron | 40.0% |
| GTTCCCTAGAATGTCTTCTA+AGG | - | chr3_1:45680949-45680968 | Msa0358960:intron | 40.0% | |
| GAGAGTAATTGAGGAAAGGT+AGG | - | chr3_1:45681346-45681365 | Msa0358960:intron | 40.0% | |
| ! | AGATTCCCATGTTGGTTGAA+GGG | + | chr3_1:45681561-45681580 | None:intergenic | 40.0% |
| ! | TAGATTCCCATGTTGGTTGA+AGG | + | chr3_1:45681562-45681581 | None:intergenic | 40.0% |
| TTCAACCAACATGGGAATCT+AGG | - | chr3_1:45681561-45681580 | Msa0358960:intron | 40.0% | |
| TCAACCAACATGGGAATCTA+GGG | - | chr3_1:45681562-45681581 | Msa0358960:intron | 40.0% | |
| GAGCAAAATGCAACCTATAG+CGG | - | chr3_1:45681584-45681603 | Msa0358960:intron | 40.0% | |
| TCTCATAGTATCCCTCTGAT+TGG | + | chr3_1:45681619-45681638 | None:intergenic | 40.0% | |
| TCGGCGTTAAATGAATCAAG+TGG | - | chr3_1:45681752-45681771 | Msa0358960:CDS | 40.0% | |
| GTCATTGGCATTATGAGATG+AGG | + | chr3_1:45681789-45681808 | None:intergenic | 40.0% | |
| AATGCCAATGACTTCATGCA+TGG | - | chr3_1:45681797-45681816 | Msa0358960:CDS | 40.0% | |
| TCACCCTGTAGGAACTTTCT+TGG | - | chr3_1:45676587-45676606 | Msa0358960:CDS | 45.0% | |
| TGGAGAAGAATTGGAGCAGT+TGG | - | chr3_1:45676607-45676626 | Msa0358960:CDS | 45.0% | |
| GTTGACATCCCATGATCACA+AGG | + | chr3_1:45676966-45676985 | None:intergenic | 45.0% | |
| TAGCAACTGCTAGTGTGATG+TGG | - | chr3_1:45676988-45677007 | Msa0358960:intron | 45.0% | |
| AGCAACTGCTAGTGTGATGT+GGG | - | chr3_1:45676989-45677008 | Msa0358960:intron | 45.0% | |
| !! | AAGTGCTTAAAGAGTGTCCC+GGG | - | chr3_1:45677777-45677796 | Msa0358960:intron | 45.0% |
| AAATGTTAACGAGTGCTCCC+GGG | + | chr3_1:45677797-45677816 | None:intergenic | 45.0% | |
| TATGCTGTGTCTGGAGACAA+AGG | + | chr3_1:45677880-45677899 | None:intergenic | 45.0% | |
| GATCAAGCATATGCTGTGTC+TGG | + | chr3_1:45677889-45677908 | None:intergenic | 45.0% | |
| !! | CTAGCTTTGGTGCAGATTGT+TGG | + | chr3_1:45678248-45678267 | None:intergenic | 45.0% |
| CTTTCTGTAGGATCCAAGAG+AGG | - | chr3_1:45678321-45678340 | Msa0358960:intron | 45.0% | |
| !! | AAGAGGTACTCGGTTAGGTT+TGG | + | chr3_1:45678658-45678677 | None:intergenic | 45.0% |
| !! | ATGCAAAGAGGTACTCGGTT+AGG | + | chr3_1:45678663-45678682 | None:intergenic | 45.0% |
| GGAATGAGGAGAGAGAACTT+TGG | + | chr3_1:45678790-45678809 | None:intergenic | 45.0% | |
| AGTTCTCTCTCCTCATTCCT+TGG | - | chr3_1:45678791-45678810 | Msa0358960:intron | 45.0% | |
| GTTCTCTCTCCTCATTCCTT+GGG | - | chr3_1:45678792-45678811 | Msa0358960:intron | 45.0% | |
| GACTCTCCAAGAGAGGAATA+GGG | + | chr3_1:45678827-45678846 | None:intergenic | 45.0% | |
| AGACTCTCCAAGAGAGGAAT+AGG | + | chr3_1:45678828-45678847 | None:intergenic | 45.0% | |
| !! | GAGATAACTAGTTGATGGGG+TGG | - | chr3_1:45678940-45678959 | Msa0358960:intron | 45.0% |
| GCCCAACTCACCAAATCATA+AGG | + | chr3_1:45679042-45679061 | None:intergenic | 45.0% | |
| ACAAGAGTCCAATTTACGGG+TGG | - | chr3_1:45679156-45679175 | Msa0358960:intron | 45.0% | |
| GCTTAAACGAGGAGATCCAT+TGG | - | chr3_1:45679192-45679211 | Msa0358960:intron | 45.0% | |
| AATAGGCCTTCAAGGTAGAG+TGG | - | chr3_1:45679827-45679846 | Msa0358960:intron | 45.0% | |
| CAAAGAAAGTTTGTGGGGAG+AGG | - | chr3_1:45679930-45679949 | Msa0358960:intron | 45.0% | |
| CAAGATTGGCATCCTTATGG+TGG | - | chr3_1:45680177-45680196 | Msa0358960:intron | 45.0% | |
| ! | ATTGGCATCCTTATGGTGGA+AGG | - | chr3_1:45680181-45680200 | Msa0358960:intron | 45.0% |
| TGCAATCGGCTAGTGGAAAA+CGG | - | chr3_1:45680211-45680230 | Msa0358960:intron | 45.0% | |
| !! | CAAGGTGTTAGGTTGATGCT+TGG | - | chr3_1:45680242-45680261 | Msa0358960:intron | 45.0% |
| TTTCTTCGTGTGGAGACGAA+TGG | - | chr3_1:45680384-45680403 | Msa0358960:intron | 45.0% | |
| GAACCCACATTGAATCCTGT+TGG | + | chr3_1:45680549-45680568 | None:intergenic | 45.0% | |
| GATTCAATGTGGGTTCGAGA+TGG | - | chr3_1:45680553-45680572 | Msa0358960:intron | 45.0% | |
| CCCTCATACTAAGCACAACT+TGG | + | chr3_1:45680600-45680619 | None:intergenic | 45.0% | |
| AACAAATGTTCCTCCACCTC+CGG | + | chr3_1:45680627-45680646 | None:intergenic | 45.0% | |
| GTGGCTAGGTATAATTTCGG+TGG | - | chr3_1:45680692-45680711 | Msa0358960:intron | 45.0% | |
| !! | TTCTATGGTGGGTAAAGGGA+AGG | - | chr3_1:45680748-45680767 | Msa0358960:intron | 45.0% |
| !! | TCTATGGTGGGTAAAGGGAA+GGG | - | chr3_1:45680749-45680768 | Msa0358960:intron | 45.0% |
| CTCTCATGAGTGCCATCAAT+AGG | + | chr3_1:45681331-45681350 | None:intergenic | 45.0% | |
| GGCACTCATGAGAGTAATTG+AGG | - | chr3_1:45681337-45681356 | Msa0358960:intron | 45.0% | |
| ATGTGACCCTTCAACCAACA+TGG | - | chr3_1:45681552-45681571 | Msa0358960:intron | 45.0% | |
| TGTGACCCTTCAACCAACAT+GGG | - | chr3_1:45681553-45681572 | Msa0358960:intron | 45.0% | |
| AGTATCCCTCTGATTGGTGA+GGG | + | chr3_1:45681613-45681632 | None:intergenic | 45.0% | |
| TAGTATCCCTCTGATTGGTG+AGG | + | chr3_1:45681614-45681633 | None:intergenic | 45.0% | |
| AATGAATCAAGTGGAGCTGC+AGG | - | chr3_1:45681761-45681780 | Msa0358960:CDS | 45.0% | |
| CCATCCATGCATGAAGTCAT+TGG | + | chr3_1:45681804-45681823 | None:intergenic | 45.0% | |
| CCAATGACTTCATGCATGGA+TGG | - | chr3_1:45681801-45681820 | Msa0358960:CDS | 45.0% | |
| !!! | GTTTTTTTATTTTTTATTAA+AGG | - | chr3_1:45677477-45677496 | Msa0358960:intron | 5.0% |
| ! | GGCTGTATAGTGGGAAGTGA+AGG | - | chr3_1:45677281-45677300 | Msa0358960:intron | 50.0% |
| ACAAAGGGGAGCAACAACCT+TGG | - | chr3_1:45677540-45677559 | Msa0358960:intron | 50.0% | |
| AGGCGGTGGATCTAGCTAAA+AGG | - | chr3_1:45678975-45678994 | Msa0358960:intron | 50.0% | |
| TACGGGTGGCAATTAGTAGG+TGG | - | chr3_1:45679170-45679189 | Msa0358960:intron | 50.0% | |
| AGGAGCTTCAATGAGAAGGC+CGG | - | chr3_1:45679250-45679269 | Msa0358960:intron | 50.0% | |
| AGTTGGAGCGAGTCCTAGAA+AGG | - | chr3_1:45679748-45679767 | Msa0358960:intron | 50.0% | |
| ! | AAGTTTGTGGGGAGAGGTGT+TGG | - | chr3_1:45679936-45679955 | Msa0358960:intron | 50.0% |
| !! | AGTTTGTGGGGAGAGGTGTT+GGG | - | chr3_1:45679937-45679956 | Msa0358960:intron | 50.0% |
| CCAAAGCCTTCACTACCACT+TGG | + | chr3_1:45680067-45680086 | None:intergenic | 50.0% | |
| ! | CCAAGTGGTAGTGAAGGCTT+TGG | - | chr3_1:45680064-45680083 | Msa0358960:intron | 50.0% |
| ! | AGTGGTAGTGAAGGCTTTGG+TGG | - | chr3_1:45680067-45680086 | Msa0358960:intron | 50.0% |
| ! | GTAGTGAAGGCTTTGGTGGA+GGG | - | chr3_1:45680071-45680090 | Msa0358960:intron | 50.0% |
| GCAATCGGCTAGTGGAAAAC+GGG | - | chr3_1:45680212-45680231 | Msa0358960:intron | 50.0% | |
| CAATCGGCTAGTGGAAAACG+GGG | - | chr3_1:45680213-45680232 | Msa0358960:intron | 50.0% | |
| AATCGGCTAGTGGAAAACGG+GGG | - | chr3_1:45680214-45680233 | Msa0358960:intron | 50.0% | |
| GTCCGACCAAAATCCTTGTG+TGG | - | chr3_1:45680312-45680331 | Msa0358960:intron | 50.0% | |
| TCGGTTGCTCTTTCTTCGTG+TGG | - | chr3_1:45680374-45680393 | Msa0358960:intron | 50.0% | |
| GTTCGAGATGGGTGTTTCGT+GGG | - | chr3_1:45680565-45680584 | Msa0358960:intron | 50.0% | |
| TGCTTAGTATGAGGGGACTC+CGG | - | chr3_1:45680605-45680624 | Msa0358960:intron | 50.0% | |
| TGCTCCCTAGATTCCCATGT+TGG | + | chr3_1:45681569-45681588 | None:intergenic | 50.0% | |
| TGGGGTGGTTGTGCTTAACG+AGG | - | chr3_1:45678955-45678974 | Msa0358960:intron | 55.0% | |
| GGTGGTTGTGCTTAACGAGG+CGG | - | chr3_1:45678958-45678977 | Msa0358960:intron | 55.0% | |
| AGCTTCAATGAGAAGGCCGG+CGG | - | chr3_1:45679253-45679272 | Msa0358960:intron | 55.0% | |
| !! | GTTTGTGGGGAGAGGTGTTG+GGG | - | chr3_1:45679938-45679957 | Msa0358960:intron | 55.0% |
| !! | TTTGTGGGGAGAGGTGTTGG+GGG | - | chr3_1:45679939-45679958 | Msa0358960:intron | 55.0% |
| ! | GGTAGTGAAGGCTTTGGTGG+AGG | - | chr3_1:45680070-45680089 | Msa0358960:intron | 55.0% |
| GGTTCGAGATGGGTGTTTCG+TGG | - | chr3_1:45680564-45680583 | Msa0358960:intron | 55.0% | |
| TTAGTATGAGGGGACTCCGG+AGG | - | chr3_1:45680608-45680627 | Msa0358960:intron | 55.0% | |
| ATCCCTCTGATTGGTGAGGG+TGG | + | chr3_1:45681610-45681629 | None:intergenic | 55.0% | |
| GGTTGTGCTTAACGAGGCGG+TGG | - | chr3_1:45678961-45678980 | Msa0358960:intron | 60.0% | |
| ATGAGAAGGCCGGCGGAGTT+AGG | - | chr3_1:45679260-45679279 | Msa0358960:intron | 60.0% | |
| TGAGAAGGCCGGCGGAGTTA+GGG | - | chr3_1:45679261-45679280 | Msa0358960:intron | 60.0% | |
| GGCTAGTGGAAAACGGGGGA+GGG | - | chr3_1:45680218-45680237 | Msa0358960:intron | 60.0% | |
| TGGAAAACGGGGGAGGGACA+AGG | - | chr3_1:45680224-45680243 | Msa0358960:intron | 60.0% | |
| TTGGTGAGGGTGGCCGCTAT+AGG | + | chr3_1:45681600-45681619 | None:intergenic | 60.0% | |
| GGCCACCCTCACCAATCAGA+GGG | - | chr3_1:45681605-45681624 | Msa0358960:intron | 60.0% | |
| CGGCTAGTGGAAAACGGGGG+AGG | - | chr3_1:45680217-45680236 | Msa0358960:intron | 65.0% | |
| ! | CGGGGGAGGGACAAGGTGTT+AGG | - | chr3_1:45680231-45680250 | Msa0358960:intron | 65.0% |
| GTATGAGGGGACTCCGGAGG+TGG | - | chr3_1:45680611-45680630 | Msa0358960:intron | 65.0% | |
| CGGCCACCCTCACCAATCAG+AGG | - | chr3_1:45681604-45681623 | Msa0358960:intron | 65.0% | |
| TGAGGGGACTCCGGAGGTGG+AGG | - | chr3_1:45680614-45680633 | Msa0358960:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 45676548 | 45681832 | 45676548 | ID=Msa0358960;Name=Msa0358960 |
| chr3_1 | mRNA | 45676548 | 45681832 | 45676548 | ID=Msa0358960-mRNA-1;Parent=Msa0358960;Name=Msa0358960-mRNA-1;_AED=0.16;_eAED=0.25;_QI=0|0|0|1|1|1|5|0|151 |
| chr3_1 | exon | 45681683 | 45681832 | 45681683 | ID=Msa0358960-mRNA-1:exon:7980;Parent=Msa0358960-mRNA-1 |
| chr3_1 | exon | 45680449 | 45680490 | 45680449 | ID=Msa0358960-mRNA-1:exon:7979;Parent=Msa0358960-mRNA-1 |
| chr3_1 | exon | 45680320 | 45680361 | 45680320 | ID=Msa0358960-mRNA-1:exon:7978;Parent=Msa0358960-mRNA-1 |
| chr3_1 | exon | 45676711 | 45676841 | 45676711 | ID=Msa0358960-mRNA-1:exon:7977;Parent=Msa0358960-mRNA-1 |
| chr3_1 | exon | 45676548 | 45676638 | 45676548 | ID=Msa0358960-mRNA-1:exon:7976;Parent=Msa0358960-mRNA-1 |
| chr3_1 | CDS | 45681683 | 45681832 | 45681683 | ID=Msa0358960-mRNA-1:cds;Parent=Msa0358960-mRNA-1 |
| chr3_1 | CDS | 45680449 | 45680490 | 45680449 | ID=Msa0358960-mRNA-1:cds;Parent=Msa0358960-mRNA-1 |
| chr3_1 | CDS | 45680320 | 45680361 | 45680320 | ID=Msa0358960-mRNA-1:cds;Parent=Msa0358960-mRNA-1 |
| chr3_1 | CDS | 45676711 | 45676841 | 45676711 | ID=Msa0358960-mRNA-1:cds;Parent=Msa0358960-mRNA-1 |
| chr3_1 | CDS | 45676548 | 45676638 | 45676548 | ID=Msa0358960-mRNA-1:cds;Parent=Msa0358960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
