AlfalfaGEDB | Msa0637540

M. sativa cultivar zhongmu-4 / Msa0637540

KEGG: K00844
GO: GO:0001678 GO:0003674 GO:0003824 GO:0004340 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008865 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009536 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016021 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019158 GO:0019200 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019725 GO:0019752 GO:0019867 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0032787 GO:0033500 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042592 GO:0042593 GO:0042866 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044262 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046835 GO:0046939 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0048878 GO:0050896 GO:0051156 GO:0051186 GO:0051188 GO:0055082 GO:0055086 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080147 GO:0090407 GO:0090558 GO:0090627 GO:0098573 GO:0098588 GO:0098805 GO:0099402 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1905392
PFAM: PF00349.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0637540	XP_003610965.1	91.860	86	7	0	25	110	141	226	2.62e-46	166

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0637540	sp\|Q9LPS1\|HXK3_ARATH	59.341	91	36	1	21	110	137	227	2.23e-28	110

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0273660	Msa0637540	0.804432	2.165960e-49	-8.615850e-47
Msa0326200	Msa0637540	0.805653	1.203097e-49	-8.615850e-47
Msa0358960	Msa0637540	0.812806	3.522352e-51	-8.615850e-47
Msa0399300	Msa0637540	0.817998	2.465409e-52	-8.615850e-47
Msa0484780	Msa0637540	0.818553	1.845953e-52	-8.615850e-47
Msa0545200	Msa0637540	0.803785	2.953386e-49	-8.615850e-47
Msa0637540	Msa0657970	0.828586	8.279558e-55	-8.615850e-47
Msa0637540	Msa0717890	0.808528	2.963094e-50	-8.615850e-47
Msa0637540	Msa0887990	0.816953	4.240004e-52	-8.615850e-47
Msa0637540	Msa0909140	0.812088	5.055541e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0637540	MtrunA17_Chr5g0396421	91.860	86	7	0	25	110	141	226	2.41e-50	166
Msa0637540	MtrunA17_Chr1g0156571	55.682	88	37	1	25	110	143	230	5.08e-26	100
Msa0637540	MtrunA17_Chr8g0389821	53.409	88	39	2	25	110	141	228	5.46e-22	89.0
Msa0637540	MtrunA17_Chr8g0340741	45.714	105	52	2	11	110	123	227	6.04e-22	89.0
Msa0637540	MtrunA17_Chr6g0487071	45.455	88	46	1	25	110	139	226	1.86e-19	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0637540	AT1G50460.2	59.341	91	36	1	21	110	137	227	8.95e-30	109
Msa0637540	AT1G50460.3	59.341	91	36	1	21	110	61	151	1.43e-29	109
Msa0637540	AT1G50460.1	59.341	91	36	1	21	110	137	227	2.27e-29	110
Msa0637540	AT3G20040.1	57.609	92	37	1	21	110	137	228	1.01e-27	105
Msa0637540	AT1G47840.2	50.562	89	41	1	25	110	144	232	2.28e-22	89.7
Msa0637540	AT1G47840.1	50.562	89	41	1	25	110	144	232	3.71e-22	90.1
Msa0637540	AT4G29130.1	54.023	87	38	1	26	110	142	228	4.46e-22	89.7
Msa0637540	AT2G19860.2	53.409	88	39	1	25	110	32	119	2.82e-20	84.3
Msa0637540	AT2G19860.1	53.409	88	39	1	25	110	141	228	3.83e-20	84.3

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Find 34 sgRNAs with CRISPR-Local

Find 491 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAGAACAAGGGTAA+AGG	0.493647	4_3:+29242092	Msa0637540:five_prime_UTR
AAACAAATGTCTGTTTCCTC+GGG	0.506432	4_3:+29244102	Msa0637540:CDS
AAACAAGAGTAGTGTGAAGA+AGG	0.535530	4_3:+29242179	Msa0637540:five_prime_UTR
AAACAGACATTTGTTTCATA+GGG	0.475582	4_3:-29244095	None:intergenic
ACGGCGGCGGTGAAGATCGC+AGG	0.526203	4_3:-29237290	None:intergenic
ACTGTCTGCAAAGCTGTTGG+TGG	0.576536	4_3:+29242297	Msa0637540:five_prime_UTR
AGACATTTGTTTCATAGGGA+AGG	0.529304	4_3:-29244091	None:intergenic
AGAGAACAAGGGTAAAGGAG+AGG	0.625869	4_3:+29242097	Msa0637540:five_prime_UTR
AGATGTGCATGTAGCTGCCT+TGG	0.494377	4_3:+29244382	Msa0637540:CDS
AGATGTTGCAGCATGTTTGC+AGG	0.362698	4_3:+29244337	Msa0637540:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAACACAGGAAAAAAATTC+TGG	-	chr4_3:29237524-29237543	None:intergenic	30.0%
AAAAAAAAACCCATACCAGT+TGG	-	chr4_3:29237613-29237632	None:intergenic	30.0%
TTTACCGCTTATTAGAAGTA+GGG	-	chr4_3:29237769-29237788	None:intergenic	30.0%
AAGTCTCATAAACATAGAAG+CGG	+	chr4_3:29237867-29237886	Msa0637540:intron	30.0%
TTTGCTTTGACTATGTAGTT+TGG	-	chr4_3:29237972-29237991	None:intergenic	30.0%
ATGTGCAAGTGTCTATATTA+GGG	-	chr4_3:29238027-29238046	None:intergenic	30.0%
TATGTGCAAGTGTCTATATT+AGG	-	chr4_3:29238028-29238047	None:intergenic	30.0%
ATAGACACTTGCACATAAAA+AGG	+	chr4_3:29238031-29238050	Msa0637540:intron	30.0%
TTCACCAACAATGTATGTAA+TGG	+	chr4_3:29238395-29238414	Msa0637540:intron	30.0%
TGCTTGAATTATGGATATTG+TGG	-	chr4_3:29238661-29238680	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	29237243	29245327	29237243	ID=Msa0637540;Name=Msa0637540
chr4_3	mRNA	29237243	29245327	29237243	ID=Msa0637540-mRNA-1;Parent=Msa0637540;Name=Msa0637540-mRNA-1;_AED=0.40;_eAED=0.40;_QI=343\|0.33\|0.57\|0.85\|0.33\|0.57\|7\|0\|110
chr4_3	exon	29237243	29237396	29237243	ID=Msa0637540-mRNA-1:exon:7187;Parent=Msa0637540-mRNA-1
chr4_3	exon	29237572	29237616	29237572	ID=Msa0637540-mRNA-1:exon:7188;Parent=Msa0637540-mRNA-1
chr4_3	exon	29242090	29242200	29242090	ID=Msa0637540-mRNA-1:exon:7189;Parent=Msa0637540-mRNA-1
chr4_3	exon	29242295	29242402	29242295	ID=Msa0637540-mRNA-1:exon:7190;Parent=Msa0637540-mRNA-1
chr4_3	exon	29243991	29244167	29243991	ID=Msa0637540-mRNA-1:exon:7191;Parent=Msa0637540-mRNA-1
chr4_3	exon	29244329	29244403	29244329	ID=Msa0637540-mRNA-1:exon:7192;Parent=Msa0637540-mRNA-1
chr4_3	exon	29245325	29245327	29245325	ID=Msa0637540-mRNA-1:exon:7193;Parent=Msa0637540-mRNA-1
chr4_3	five_prime_UTR	29237243	29237396	29237243	ID=Msa0637540-mRNA-1:five_prime_utr;Parent=Msa0637540-mRNA-1
chr4_3	five_prime_UTR	29237572	29237616	29237572	ID=Msa0637540-mRNA-1:five_prime_utr;Parent=Msa0637540-mRNA-1
chr4_3	five_prime_UTR	29242090	29242200	29242090	ID=Msa0637540-mRNA-1:five_prime_utr;Parent=Msa0637540-mRNA-1
chr4_3	five_prime_UTR	29242295	29242327	29242295	ID=Msa0637540-mRNA-1:five_prime_utr;Parent=Msa0637540-mRNA-1
chr4_3	CDS	29242328	29242402	29242328	ID=Msa0637540-mRNA-1:cds;Parent=Msa0637540-mRNA-1
chr4_3	CDS	29243991	29244167	29243991	ID=Msa0637540-mRNA-1:cds;Parent=Msa0637540-mRNA-1
chr4_3	CDS	29244329	29244403	29244329	ID=Msa0637540-mRNA-1:cds;Parent=Msa0637540-mRNA-1
chr4_3	CDS	29245325	29245327	29245325	ID=Msa0637540-mRNA-1:cds;Parent=Msa0637540-mRNA-1

Gene Sequence	>Msa0637540 ATGCTTCTCAACAAAGCAAGAAGTCATACAAGAAAGTTTACAAAAATAGGTGATGATTATAATAGCTTGGAGCAGGATCTCTTTGATTTTATCGCATCATCGTTAAAAGAACTCATTGCTAAAGAAGATGGTTCCAATACTTCCCATGACAGAAGCGAACTTGGCTTTACATTCTCCTTCCCTATGAAACAAATGTCTGTTTCCTCGGGAATTTTAATCAAGTGGATAAAAGGGTTTTCCATTGTAGATATGGTTGGAAGAGATGTTGCAGCATGTTTGCAGGAAGCATTTGCACGAAATGGCCTAGATGTGCATGTAGCTGCCTTGGTA
Protein sequence	>Msa0637540 MLLNKARSHTRKFTKIGDDYNSLEQDLFDFIASSLKELIAKEDGSNTSHDRSELGFTFSFPMKQMSVSSGILIKWIKGFSIVDMVGRDVAACLQEAFARNGLDVHVAALV