Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417070 | XP_003601019.1 | 95.833 | 192 | 8 | 0 | 20 | 211 | 1 | 192 | 5.11e-132 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417070 | G7J2G5 | 95.833 | 192 | 8 | 0 | 20 | 211 | 1 | 192 | 2.44e-132 | 379 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0224330 | Msa0417070 | 0.807363 | 5.243052e-50 | -8.615850e-47 |
| Msa0226630 | Msa0417070 | 0.807062 | 6.071435e-50 | -8.615850e-47 |
| Msa0369460 | Msa0417070 | 0.823014 | 1.739537e-53 | -8.615850e-47 |
| Msa0417070 | Msa0554050 | 0.811312 | 7.455376e-51 | -8.615850e-47 |
| Msa0417070 | Msa1113170 | 0.807977 | 3.883545e-50 | -8.615850e-47 |
| Msa0417070 | Msa1178180 | 0.815959 | 7.077275e-52 | -8.615850e-47 |
| Msa0278110 | Msa0417070 | 0.800283 | 1.549747e-48 | -8.615850e-47 |
| Msa0363050 | Msa0417070 | 0.804372 | 2.229484e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417070 | MtrunA17_Chr3g0114361 | 95.833 | 192 | 8 | 0 | 20 | 211 | 1 | 192 | 4.70e-136 | 379 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0417070 | AT3G56210.2 | 57.812 | 192 | 79 | 2 | 20 | 211 | 1 | 190 | 1.81e-74 | 223 |
| Msa0417070 | AT3G56210.4 | 57.812 | 192 | 79 | 2 | 20 | 211 | 1 | 190 | 1.81e-74 | 223 |
| Msa0417070 | AT3G56210.1 | 57.812 | 192 | 79 | 2 | 20 | 211 | 1 | 190 | 1.81e-74 | 223 |
| Msa0417070 | AT3G56210.5 | 57.216 | 194 | 79 | 3 | 20 | 211 | 1 | 192 | 1.76e-72 | 218 |
Find 47 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAAGTTGAGAGAAAATT+TGG | 0.148495 | 3_2:-64182518 | Msa0417070:CDS |
| ATACCAGTTCTTTCCTTATA+TGG | 0.164827 | 3_2:-64182450 | Msa0417070:CDS |
| CTGGGGCCGTTTCGGTTATT+AGG | 0.245410 | 3_2:-64180686 | Msa0417070:CDS |
| TCAAGGATCCGTTGTTTAAA+AGG | 0.261990 | 3_2:-64182276 | Msa0417070:CDS |
| CTTGCATCCTTGCATCGTGC+TGG | 0.323953 | 3_2:-64180705 | Msa0417070:CDS |
| TACCAGTTCTTTCCTTATAT+GGG | 0.350225 | 3_2:-64182449 | Msa0417070:intron |
| GTACCTTGAAAATGCCTTCA+TGG | 0.352733 | 3_2:+64180488 | None:intergenic |
| TTGCATCCTTGCATCGTGCT+GGG | 0.358531 | 3_2:-64180704 | Msa0417070:CDS |
| TTGCGAGATTGTTGATTGAT+TGG | 0.371146 | 3_2:+64183069 | None:intergenic |
| GCATCGTGCTGGGGCCGTTT+CGG | 0.371517 | 3_2:-64180694 | Msa0417070:CDS |
| GGATGATCAATACCCATATA+AGG | 0.383483 | 3_2:+64182437 | None:intergenic |
| TCAAGTTGAGCTTGATGAAA+AGG | 0.398687 | 3_2:-64180623 | Msa0417070:CDS |
| ACACATCATACTTAAGATCT+TGG | 0.401000 | 3_2:+64180598 | None:intergenic |
| ATTACCATCTTTCGCAAAAC+GGG | 0.402350 | 3_2:+64182234 | None:intergenic |
| AGATGCTATTACAAACTTCA+TGG | 0.408096 | 3_2:+64180356 | None:intergenic |
| TAGGATGAAGATAGTTGAGT+TGG | 0.416955 | 3_2:-64181605 | Msa0417070:CDS |
| CAATTTCTCATATGTACTAC+TGG | 0.435581 | 3_2:-64180406 | Msa0417070:three_prime_UTR |
| ATGAAGTTGAGAGAAAATTT+GGG | 0.446589 | 3_2:-64182517 | Msa0417070:CDS |
| ACCAGATGAGCACCTACTCT+TGG | 0.448129 | 3_2:-64182543 | Msa0417070:intron |
| TCTGCATCCTCGAGTGAACT+TGG | 0.448399 | 3_2:+64180657 | None:intergenic |
| AAGAACCTCTAGTAAAAGTC+AGG | 0.463684 | 3_2:+64180572 | None:intergenic |
| AATTACCATCTTTCGCAAAA+CGG | 0.470056 | 3_2:+64182233 | None:intergenic |
| TTCGGGTCTGCACTTTATGC+GGG | 0.472073 | 3_2:-64182473 | Msa0417070:CDS |
| AAGGATGGGAGCTTCTAGAT+TGG | 0.473236 | 3_2:-64182257 | Msa0417070:CDS |
| GGATCCGTTGTTTAAAAGGA+TGG | 0.482306 | 3_2:-64182272 | Msa0417070:CDS |
| TCAGTGCTGCTTTCCGTGTA+CGG | 0.483663 | 3_2:+64181536 | None:intergenic |
| TACCCATATAAGGAAAGAAC+TGG | 0.491561 | 3_2:+64182447 | None:intergenic |
| TTTCGGGTCTGCACTTTATG+CGG | 0.501592 | 3_2:-64182474 | Msa0417070:CDS |
| AGGATGAAGATAGTTGAGTT+GGG | 0.504955 | 3_2:-64181604 | Msa0417070:CDS |
| AACGGCCCCAGCACGATGCA+AGG | 0.515848 | 3_2:+64180698 | None:intergenic |
| TGCATCCTTGCATCGTGCTG+GGG | 0.517338 | 3_2:-64180703 | Msa0417070:CDS |
| GAAAGCAGCACTGAATGCTC+TGG | 0.520592 | 3_2:-64181527 | Msa0417070:CDS |
| CGGCTAAAGATGACCGTACA+CGG | 0.543174 | 3_2:-64181549 | Msa0417070:CDS |
| CTGGCTCAGCTGTCACACTC+AGG | 0.543803 | 3_2:-64181508 | Msa0417070:intron |
| ATGAAGATAGTTGAGTTGGG+TGG | 0.554958 | 3_2:-64181601 | Msa0417070:CDS |
| AGCAGACCTAATAACCGAAA+CGG | 0.558811 | 3_2:+64180680 | None:intergenic |
| CAACTTCATGCTCCAAGAGT+AGG | 0.559968 | 3_2:+64182531 | None:intergenic |
| CATGCTCCAAGCCGACAAGA+AGG | 0.570567 | 3_2:+64180538 | None:intergenic |
| TTAGAGTAAACTAGCCATGA+AGG | 0.572892 | 3_2:-64180502 | Msa0417070:three_prime_UTR |
| GATCCGTTGTTTAAAAGGAT+GGG | 0.586236 | 3_2:-64182271 | Msa0417070:CDS |
| GCTCATAAATATGTTAAGCA+CGG | 0.587962 | 3_2:-64181569 | Msa0417070:CDS |
| ATGCTCCAAGCCGACAAGAA+GGG | 0.588040 | 3_2:+64180539 | None:intergenic |
| CAACGGTGCGCATTGTGCAA+AGG | 0.589493 | 3_2:+64183237 | None:intergenic |
| GTTAGAGAATTGAGCTGCAA+CGG | 0.591698 | 3_2:+64183220 | None:intergenic |
| GGAAAATTTGATGCATCAGT+CGG | 0.605099 | 3_2:-64182314 | Msa0417070:CDS |
| GTCTGCTCCAAGTTCACTCG+AGG | 0.631606 | 3_2:-64180664 | Msa0417070:CDS |
| AAGTTGAGAGAAAATTTGGG+TGG | 0.650365 | 3_2:-64182514 | Msa0417070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTAAATGAATGAAAAA+GGG | + | chr3_2:64180450-64180469 | None:intergenic | 15.0% |
| !! | AATTTGTAAATGAATGAAAA+AGG | + | chr3_2:64180451-64180470 | None:intergenic | 15.0% |
| !!! | TACTTAATACTATTGATTTT+GGG | - | chr3_2:64180735-64180754 | Msa0417070:intron | 15.0% |
| !!! | TTATTGAAGAGTATATTTTT+CGG | - | chr3_2:64181106-64181125 | Msa0417070:intron | 15.0% |
| !! | AATTGAAATTGTTGAATTAA+TGG | - | chr3_2:64181702-64181721 | Msa0417070:intron | 15.0% |
| !!! | AACATTTGTCAATTTATTTT+GGG | - | chr3_2:64182413-64182432 | Msa0417070:intron | 15.0% |
| !!! | CAATTTTTCAACAAAAGTAT+GGG | + | chr3_2:64180594-64180613 | None:intergenic | 20.0% |
| !!! | CTACTTAATACTATTGATTT+TGG | - | chr3_2:64180734-64180753 | Msa0417070:intron | 20.0% |
| !!! | ACTTAATACTATTGATTTTG+GGG | - | chr3_2:64180736-64180755 | Msa0417070:intron | 20.0% |
| !!! | TATTGAAGAGTATATTTTTC+GGG | - | chr3_2:64181107-64181126 | Msa0417070:intron | 20.0% |
| !! | TTGTTGAAACAAAAATTTCA+GGG | - | chr3_2:64181261-64181280 | Msa0417070:intron | 20.0% |
| !!! | ATGACAAAATTCTAGTTAAA+GGG | - | chr3_2:64181580-64181599 | Msa0417070:CDS | 20.0% |
| !! | TATCTTACATTGAAAAACTA+AGG | + | chr3_2:64181899-64181918 | None:intergenic | 20.0% |
| !! | ATATTACAGATAAATTGCAA+TGG | + | chr3_2:64182281-64182300 | None:intergenic | 20.0% |
| !!! | GAACATTTGTCAATTTATTT+TGG | - | chr3_2:64182412-64182431 | Msa0417070:intron | 20.0% |
| !! | TGATAATTTATCATTCTACA+AGG | + | chr3_2:64182556-64182575 | None:intergenic | 20.0% |
| !! | TTTTCATCTTCTAATAGCAA+AGG | - | chr3_2:64180552-64180571 | Msa0417070:three_prime_UTR | 25.0% |
| !!! | CCAATTTTTCAACAAAAGTA+TGG | + | chr3_2:64180595-64180614 | None:intergenic | 25.0% |
| !! | CCATACTTTTGTTGAAAAAT+TGG | - | chr3_2:64180592-64180611 | Msa0417070:CDS | 25.0% |
| !! | TAGTTAGTTCTTCAATTTGA+GGG | + | chr3_2:64180657-64180676 | None:intergenic | 25.0% |
| !! | TTAGTTAGTTCTTCAATTTG+AGG | + | chr3_2:64180658-64180677 | None:intergenic | 25.0% |
| !!! | TACTTGTTGTAGTAAATGAT+AGG | - | chr3_2:64180697-64180716 | Msa0417070:CDS | 25.0% |
| !!! | CTTAATACTATTGATTTTGG+GGG | - | chr3_2:64180737-64180756 | Msa0417070:intron | 25.0% |
| ! | CATAAATAAATGTAATCGCA+CGG | + | chr3_2:64180856-64180875 | None:intergenic | 25.0% |
| ! | TCATTCATTATGTCAAAACA+TGG | - | chr3_2:64180947-64180966 | Msa0417070:intron | 25.0% |
| !! | AGTTCAACTCTAAATGATTT+TGG | - | chr3_2:64180988-64181007 | Msa0417070:intron | 25.0% |
| ! | ATGAAGTTGAGAGAAAATTT+GGG | - | chr3_2:64181080-64181099 | Msa0417070:intron | 25.0% |
| ! | GTTGTTGAAACAAAAATTTC+AGG | - | chr3_2:64181260-64181279 | Msa0417070:intron | 25.0% |
| ! | TGTTGAAACAAAAATTTCAG+GGG | - | chr3_2:64181262-64181281 | Msa0417070:intron | 25.0% |
| !! | GATGACAAAATTCTAGTTAA+AGG | - | chr3_2:64181579-64181598 | Msa0417070:CDS | 25.0% |
| !! | TGACAAAATTCTAGTTAAAG+GGG | - | chr3_2:64181581-64181600 | Msa0417070:CDS | 25.0% |
| ! | AACTAGCTAAAACAAAAAAG+AGG | + | chr3_2:64181826-64181845 | None:intergenic | 25.0% |
| ! | TCTACTTAGAAACAAAAATC+TGG | + | chr3_2:64182160-64182179 | None:intergenic | 25.0% |
| !!! | ACCATTTGTTTTTAATATGC+TGG | - | chr3_2:64182179-64182198 | Msa0417070:intron | 25.0% |
| ! | ACCAGCATATTAAAAACAAA+TGG | + | chr3_2:64182183-64182202 | None:intergenic | 25.0% |
| !!! | ATTTGTTTTTAATATGCTGG+TGG | - | chr3_2:64182182-64182201 | Msa0417070:intron | 25.0% |
| ! | TCATCTTTATTCAACCAATA+TGG | - | chr3_2:64182371-64182390 | Msa0417070:intron | 25.0% |
| ! | CATCTTTATTCAACCAATAT+GGG | - | chr3_2:64182372-64182391 | Msa0417070:intron | 25.0% |
| !! | TCAATTTTATATGCCCATAT+TGG | + | chr3_2:64182388-64182407 | None:intergenic | 25.0% |
| ! | ATGGGCATATAAAATTGAAA+AGG | - | chr3_2:64182390-64182409 | Msa0417070:intron | 25.0% |
| ! | TTCTTACAATATTACAAGGT+TGG | - | chr3_2:64182619-64182638 | Msa0417070:intron | 25.0% |
| ! | AAGAATATGTAGTTGTAACA+GGG | - | chr3_2:64182642-64182661 | Msa0417070:intron | 25.0% |
| ! | TTTAAACAAAAAGAGCCTAA+CGG | - | chr3_2:64182697-64182716 | Msa0417070:intron | 25.0% |
| !!! | TACTGGAGATTTTTTTCTTT+TGG | - | chr3_2:64183208-64183227 | Msa0417070:intron | 25.0% |
| AAAAAGGGATTGTAAGATCA+GGG | + | chr3_2:64180435-64180454 | None:intergenic | 30.0% | |
| ! | CAAAAGTATGGGTAAAGAAA+AGG | + | chr3_2:64180583-64180602 | None:intergenic | 30.0% |
| CATGAAGTTGAGAGAAAATT+TGG | - | chr3_2:64181079-64181098 | Msa0417070:intron | 30.0% | |
| ATACCAGTTCTTTCCTTATA+TGG | - | chr3_2:64181147-64181166 | Msa0417070:intron | 30.0% | |
| TACCAGTTCTTTCCTTATAT+GGG | - | chr3_2:64181148-64181167 | Msa0417070:intron | 30.0% | |
| AATTACCATCTTTCGCAAAA+CGG | + | chr3_2:64181367-64181386 | None:intergenic | 30.0% | |
| GTATTTCTTCACAAATCACT+TGG | - | chr3_2:64181399-64181418 | Msa0417070:intron | 30.0% | |
| TGCTTCAATGAATCGATATA+TGG | + | chr3_2:64181458-64181477 | None:intergenic | 30.0% | |
| ! | ATTCATTGAAGCACTTTATG+TGG | - | chr3_2:64181465-64181484 | Msa0417070:intron | 30.0% |
| !!! | GGCTGAAATTTTAATTGATC+TGG | - | chr3_2:64181678-64181697 | Msa0417070:intron | 30.0% |
| TGAATATACATATGCAAGCA+TGG | + | chr3_2:64181938-64181957 | None:intergenic | 30.0% | |
| GCTCATAAATATGTTAAGCA+CGG | - | chr3_2:64182028-64182047 | Msa0417070:intron | 30.0% | |
| GAGTTACTAATCACTACTAT+TGG | + | chr3_2:64182225-64182244 | None:intergenic | 30.0% | |
| AGTAGTGATTAGTAACTCTA+TGG | - | chr3_2:64182227-64182246 | Msa0417070:intron | 30.0% | |
| !! | ACATTTCTGGTCTACTATTT+AGG | + | chr3_2:64182254-64182273 | None:intergenic | 30.0% |
| !! | ATAATGTGCTTTGGTAGTTT+TGG | + | chr3_2:64182526-64182545 | None:intergenic | 30.0% |
| CCTTGTAATATTGTAAGAAC+TGG | + | chr3_2:64182618-64182637 | None:intergenic | 30.0% | |
| CCAGTTCTTACAATATTACA+AGG | - | chr3_2:64182615-64182634 | Msa0417070:intron | 30.0% | |
| GAAGAATATGTAGTTGTAAC+AGG | - | chr3_2:64182641-64182660 | Msa0417070:intron | 30.0% | |
| ATGCAAGAACTTCATCTATA+AGG | + | chr3_2:64182879-64182898 | None:intergenic | 30.0% | |
| ACACATCATACTTAAGATCT+TGG | + | chr3_2:64183002-64183021 | None:intergenic | 30.0% | |
| CAATTTCTCATATGTACTAC+TGG | - | chr3_2:64183191-64183210 | Msa0417070:intron | 30.0% | |
| AGATGCTATTACAAACTTCA+TGG | + | chr3_2:64183244-64183263 | None:intergenic | 30.0% | |
| TAAGATCAGGGTTGAAATTG+AGG | + | chr3_2:64180423-64180442 | None:intergenic | 35.0% | |
| GAAAAAGGGATTGTAAGATC+AGG | + | chr3_2:64180436-64180455 | None:intergenic | 35.0% | |
| ! | TTGCGAGATTGTTGATTGAT+TGG | + | chr3_2:64180531-64180550 | None:intergenic | 35.0% |
| AAGTTGAGAGAAAATTTGGG+TGG | - | chr3_2:64181083-64181102 | Msa0417070:intron | 35.0% | |
| TACCCATATAAGGAAAGAAC+TGG | + | chr3_2:64181153-64181172 | None:intergenic | 35.0% | |
| GGATGATCAATACCCATATA+AGG | + | chr3_2:64181163-64181182 | None:intergenic | 35.0% | |
| ATGAAGCTTCTGTTTACTCT+TGG | - | chr3_2:64181219-64181238 | Msa0417070:intron | 35.0% | |
| TTTGTTTCAACAACACTGTC+AGG | + | chr3_2:64181254-64181273 | None:intergenic | 35.0% | |
| GGAAAATTTGATGCATCAGT+CGG | - | chr3_2:64181283-64181302 | Msa0417070:intron | 35.0% | |
| TCAAGGATCCGTTGTTTAAA+AGG | - | chr3_2:64181321-64181340 | Msa0417070:intron | 35.0% | |
| GATCCGTTGTTTAAAAGGAT+GGG | - | chr3_2:64181326-64181345 | Msa0417070:intron | 35.0% | |
| ATTACCATCTTTCGCAAAAC+GGG | + | chr3_2:64181366-64181385 | None:intergenic | 35.0% | |
| !! | GTGTTTGAACTGTTTCTGAA+CGG | - | chr3_2:64181657-64181676 | Msa0417070:intron | 35.0% |
| AAAAGTCGTAACTGAGAACA+AGG | + | chr3_2:64181740-64181759 | None:intergenic | 35.0% | |
| ACAAAAAAGAGGCTATTTGC+TGG | + | chr3_2:64181815-64181834 | None:intergenic | 35.0% | |
| TATACATATGCAAGCATGGA+AGG | + | chr3_2:64181934-64181953 | None:intergenic | 35.0% | |
| TAGGATGAAGATAGTTGAGT+TGG | - | chr3_2:64181992-64182011 | Msa0417070:intron | 35.0% | |
| AGGATGAAGATAGTTGAGTT+GGG | - | chr3_2:64181993-64182012 | Msa0417070:intron | 35.0% | |
| TTGCAATGGATGAACATTTC+TGG | + | chr3_2:64182267-64182286 | None:intergenic | 35.0% | |
| !!! | GACATCATGTGTATTTTAGC+AGG | - | chr3_2:64182451-64182470 | Msa0417070:CDS | 35.0% |
| ATCTTATCCAATATGCTCGT+AGG | + | chr3_2:64182594-64182613 | None:intergenic | 35.0% | |
| ACTCTCACTAAGTGCTTAAA+AGG | - | chr3_2:64182729-64182748 | Msa0417070:intron | 35.0% | |
| CTCTCACTAAGTGCTTAAAA+GGG | - | chr3_2:64182730-64182749 | Msa0417070:intron | 35.0% | |
| CAGACACATTTGATATGCTA+GGG | + | chr3_2:64182780-64182799 | None:intergenic | 35.0% | |
| !! | TCAAGTTGAGCTTGATGAAA+AGG | - | chr3_2:64182974-64182993 | Msa0417070:intron | 35.0% |
| AAGAACCTCTAGTAAAAGTC+AGG | + | chr3_2:64183028-64183047 | None:intergenic | 35.0% | |
| TTAGAGTAAACTAGCCATGA+AGG | - | chr3_2:64183095-64183114 | Msa0417070:intron | 35.0% | |
| GTTAGAGAATTGAGCTGCAA+CGG | + | chr3_2:64180380-64180399 | None:intergenic | 40.0% | |
| GAATTGACACTTGTGATCGA+AGG | - | chr3_2:64180780-64180799 | Msa0417070:intron | 40.0% | |
| TGACAGACATTGACACATGT+CGG | + | chr3_2:64180818-64180837 | None:intergenic | 40.0% | |
| TCAATGTCTGTCATTGACAC+CGG | - | chr3_2:64180825-64180844 | Msa0417070:intron | 40.0% | |
| TACTACTTGTGTCAGTGTTG+TGG | - | chr3_2:64180890-64180909 | Msa0417070:intron | 40.0% | |
| AAGCTTCTGTTTACTCTTGG+TGG | - | chr3_2:64181222-64181241 | Msa0417070:intron | 40.0% | |
| GGATCCGTTGTTTAAAAGGA+TGG | - | chr3_2:64181325-64181344 | Msa0417070:intron | 40.0% | |
| ! | GCTCCCATCCTTTTAAACAA+CGG | + | chr3_2:64181332-64181351 | None:intergenic | 40.0% |
| ! | ACCTTCCTTTTGCTCAAAGA+TGG | - | chr3_2:64181966-64181985 | Msa0417070:intron | 40.0% |
| ! | CCTTCCTTTTGCTCAAAGAT+GGG | - | chr3_2:64181967-64181986 | Msa0417070:intron | 40.0% |
| TACTCCCATCTTTGAGCAAA+AGG | + | chr3_2:64181974-64181993 | None:intergenic | 40.0% | |
| ! | TTTTGCTCAAAGATGGGAGT+AGG | - | chr3_2:64181973-64181992 | Msa0417070:intron | 40.0% |
| !! | ATGAAGATAGTTGAGTTGGG+TGG | - | chr3_2:64181996-64182015 | Msa0417070:intron | 40.0% |
| ATAAGGGTTGGAGAGATAAG+GGG | + | chr3_2:64182491-64182510 | None:intergenic | 40.0% | |
| CATAAGGGTTGGAGAGATAA+GGG | + | chr3_2:64182492-64182511 | None:intergenic | 40.0% | |
| ACATAAGGGTTGGAGAGATA+AGG | + | chr3_2:64182493-64182512 | None:intergenic | 40.0% | |
| TTGGAGAGTGAGGAACATAA+GGG | + | chr3_2:64182507-64182526 | None:intergenic | 40.0% | |
| TTTGGAGAGTGAGGAACATA+AGG | + | chr3_2:64182508-64182527 | None:intergenic | 40.0% | |
| !!! | TTTGGTAGTTTTGGAGAGTG+AGG | + | chr3_2:64182517-64182536 | None:intergenic | 40.0% |
| ! | GGACTACTGATAATGTGCTT+TGG | + | chr3_2:64182535-64182554 | None:intergenic | 40.0% |
| ATCTTGTCCTACGAGCATAT+TGG | - | chr3_2:64182584-64182603 | Msa0417070:intron | 40.0% | |
| TCACTAAGTGCTTAAAAGGG+AGG | - | chr3_2:64182733-64182752 | Msa0417070:intron | 40.0% | |
| CATTTGATATGCTAGGGTGT+GGG | + | chr3_2:64182774-64182793 | None:intergenic | 40.0% | |
| ACATTTGATATGCTAGGGTG+TGG | + | chr3_2:64182775-64182794 | None:intergenic | 40.0% | |
| GCAGACACATTTGATATGCT+AGG | + | chr3_2:64182781-64182800 | None:intergenic | 40.0% | |
| ! | TCTGCAGTCTTTTAACCGAT+GGG | - | chr3_2:64182796-64182815 | Msa0417070:intron | 40.0% |
| AGCAGACCTAATAACCGAAA+CGG | + | chr3_2:64182920-64182939 | None:intergenic | 40.0% | |
| ! | GTCTTCCTGACTTTTACTAG+AGG | - | chr3_2:64183020-64183039 | Msa0417070:intron | 40.0% |
| !!! | GCCTTTTTTACCCTTCTTGT+CGG | - | chr3_2:64183048-64183067 | Msa0417070:CDS | 40.0% |
| !!! | TAGCCATGAAGGCATTTTCA+AGG | - | chr3_2:64183106-64183125 | Msa0417070:intron | 40.0% |
| GTACCTTGAAAATGCCTTCA+TGG | + | chr3_2:64183112-64183131 | None:intergenic | 40.0% | |
| !! | AAGGCATTTTCAAGGTACAC+TGG | - | chr3_2:64183114-64183133 | Msa0417070:intron | 40.0% |
| GATCAGGGTTGAAATTGAGG+AGG | + | chr3_2:64180420-64180439 | None:intergenic | 45.0% | |
| CAACTTCATGCTCCAAGAGT+AGG | + | chr3_2:64181069-64181088 | None:intergenic | 45.0% | |
| ! | TTTCGGGTCTGCACTTTATG+CGG | - | chr3_2:64181123-64181142 | Msa0417070:intron | 45.0% |
| !! | GCAGCAAAAGTGTTCAAAGC+TGG | + | chr3_2:64181184-64181203 | None:intergenic | 45.0% |
| ! | GGTATCTCTTTTGCGTGTCA+AGG | - | chr3_2:64181304-64181323 | Msa0417070:intron | 45.0% |
| AAGGATGGGAGCTTCTAGAT+TGG | - | chr3_2:64181340-64181359 | Msa0417070:intron | 45.0% | |
| CCCATCTTTGAGCAAAAGGA+AGG | + | chr3_2:64181970-64181989 | None:intergenic | 45.0% | |
| AGAGTGAGGAACATAAGGGT+TGG | + | chr3_2:64182503-64182522 | None:intergenic | 45.0% | |
| ATGCTCGTAGGACAAGATAC+AGG | + | chr3_2:64182582-64182601 | None:intergenic | 45.0% | |
| ! | GAGAGTGAATTTTCGCCGTT+AGG | + | chr3_2:64182715-64182734 | None:intergenic | 45.0% |
| ! | GTCTGCAGTCTTTTAACCGA+TGG | - | chr3_2:64182795-64182814 | Msa0417070:intron | 45.0% |
| GTCTCATAAGTACAGCCCAT+CGG | + | chr3_2:64182814-64182833 | None:intergenic | 45.0% | |
| GCCGACAAGAAGGGTAAAAA+AGG | + | chr3_2:64183052-64183071 | None:intergenic | 45.0% | |
| !! | TTTTACCCTTCTTGTCGGCT+TGG | - | chr3_2:64183053-64183072 | Msa0417070:CDS | 45.0% |
| ! | CTTGTGATCGAAGGCGTATC+TGG | - | chr3_2:64180789-64180808 | Msa0417070:intron | 50.0% |
| ATGTAATCGCACGGATGTGC+CGG | + | chr3_2:64180847-64180866 | None:intergenic | 50.0% | |
| ACTTGTGTCAGTGTTGTGGC+CGG | - | chr3_2:64180894-64180913 | Msa0417070:intron | 50.0% | |
| ACAGACACAGACACGTTCAC+CGG | + | chr3_2:64180916-64180935 | None:intergenic | 50.0% | |
| ACCAGATGAGCACCTACTCT+TGG | - | chr3_2:64181054-64181073 | Msa0417070:intron | 50.0% | |
| TCCAAGAGTAGGTGCTCATC+TGG | + | chr3_2:64181058-64181077 | None:intergenic | 50.0% | |
| TTCGGGTCTGCACTTTATGC+GGG | - | chr3_2:64181124-64181143 | Msa0417070:intron | 50.0% | |
| ! | TTGGCCCGTTTTGCGAAAGA+TGG | - | chr3_2:64181359-64181378 | Msa0417070:intron | 50.0% |
| CGGCTAAAGATGACCGTACA+CGG | - | chr3_2:64182048-64182067 | Msa0417070:intron | 50.0% | |
| !! | TCAGTGCTGCTTTCCGTGTA+CGG | + | chr3_2:64182064-64182083 | None:intergenic | 50.0% |
| ! | GAAAGCAGCACTGAATGCTC+TGG | - | chr3_2:64182070-64182089 | Msa0417070:intron | 50.0% |
| TTGGAGAGATAAGGGGTTGC+GGG | + | chr3_2:64182484-64182503 | None:intergenic | 50.0% | |
| GTTGGAGAGATAAGGGGTTG+CGG | + | chr3_2:64182485-64182504 | None:intergenic | 50.0% | |
| TTGCATCCTTGCATCGTGCT+GGG | - | chr3_2:64182893-64182912 | Msa0417070:intron | 50.0% | |
| TCTGCATCCTCGAGTGAACT+TGG | + | chr3_2:64182943-64182962 | None:intergenic | 50.0% | |
| ATGCTCCAAGCCGACAAGAA+GGG | + | chr3_2:64183061-64183080 | None:intergenic | 50.0% | |
| CAACGGTGCGCATTGTGCAA+AGG | + | chr3_2:64180363-64180382 | None:intergenic | 55.0% | |
| CTTGCATCCTTGCATCGTGC+TGG | - | chr3_2:64182892-64182911 | Msa0417070:intron | 55.0% | |
| TGCATCCTTGCATCGTGCTG+GGG | - | chr3_2:64182894-64182913 | Msa0417070:intron | 55.0% | |
| CTGGGGCCGTTTCGGTTATT+AGG | - | chr3_2:64182911-64182930 | Msa0417070:intron | 55.0% | |
| GTCTGCTCCAAGTTCACTCG+AGG | - | chr3_2:64182933-64182952 | Msa0417070:intron | 55.0% | |
| CATGCTCCAAGCCGACAAGA+AGG | + | chr3_2:64183062-64183081 | None:intergenic | 55.0% | |
| CTGGCTCAGCTGTCACACTC+AGG | - | chr3_2:64182089-64182108 | Msa0417070:intron | 60.0% | |
| AACGGCCCCAGCACGATGCA+AGG | + | chr3_2:64182902-64182921 | None:intergenic | 65.0% | |
| GCATCGTGCTGGGGCCGTTT+CGG | - | chr3_2:64182903-64182922 | Msa0417070:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 64180313 | 64183306 | 64180313 | ID=Msa0417070;Name=Msa0417070 |
| chr3_2 | mRNA | 64180313 | 64183306 | 64180313 | ID=Msa0417070-mRNA-1;Parent=Msa0417070;Name=Msa0417070-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|1|0.83|1|1|1|6|277|211 |
| chr3_2 | exon | 64180313 | 64180735 | 64180313 | ID=Msa0417070-mRNA-1:exon:14145;Parent=Msa0417070-mRNA-1 |
| chr3_2 | exon | 64181509 | 64181634 | 64181509 | ID=Msa0417070-mRNA-1:exon:14144;Parent=Msa0417070-mRNA-1 |
| chr3_2 | exon | 64182239 | 64182337 | 64182239 | ID=Msa0417070-mRNA-1:exon:14143;Parent=Msa0417070-mRNA-1 |
| chr3_2 | exon | 64182450 | 64182560 | 64182450 | ID=Msa0417070-mRNA-1:exon:14142;Parent=Msa0417070-mRNA-1 |
| chr3_2 | exon | 64183046 | 64183112 | 64183046 | ID=Msa0417070-mRNA-1:exon:14141;Parent=Msa0417070-mRNA-1 |
| chr3_2 | exon | 64183220 | 64183306 | 64183220 | ID=Msa0417070-mRNA-1:exon:14140;Parent=Msa0417070-mRNA-1 |
| chr3_2 | CDS | 64183220 | 64183306 | 64183220 | ID=Msa0417070-mRNA-1:cds;Parent=Msa0417070-mRNA-1 |
| chr3_2 | CDS | 64183046 | 64183112 | 64183046 | ID=Msa0417070-mRNA-1:cds;Parent=Msa0417070-mRNA-1 |
| chr3_2 | CDS | 64182450 | 64182560 | 64182450 | ID=Msa0417070-mRNA-1:cds;Parent=Msa0417070-mRNA-1 |
| chr3_2 | CDS | 64182239 | 64182337 | 64182239 | ID=Msa0417070-mRNA-1:cds;Parent=Msa0417070-mRNA-1 |
| chr3_2 | CDS | 64181509 | 64181634 | 64181509 | ID=Msa0417070-mRNA-1:cds;Parent=Msa0417070-mRNA-1 |
| chr3_2 | CDS | 64180590 | 64180735 | 64180590 | ID=Msa0417070-mRNA-1:cds;Parent=Msa0417070-mRNA-1 |
| chr3_2 | three_prime_UTR | 64180313 | 64180589 | 64180313 | ID=Msa0417070-mRNA-1:three_prime_utr;Parent=Msa0417070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
