AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0591770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0591770 MtrunA17_Chr4g0008871 98.431 255 4 0 1 255 1 255 0.0 529
Msa0591770 MtrunA17_Chr8g0388401 25.610 246 152 6 5 250 57 271 2.05e-18 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0591770 AT3G09250.3 61.140 193 69 3 67 254 39 230 9.71e-85 253
Msa0591770 AT3G09250.1 61.140 193 69 3 67 254 53 244 1.48e-84 253
Msa0591770 AT3G09250.2 59.341 182 68 3 67 243 39 219 3.19e-75 229
Msa0591770 AT4G10925.3 31.667 120 78 2 131 250 104 219 5.56e-17 77.8
Msa0591770 AT4G10925.2 31.667 120 78 2 131 250 104 219 5.56e-17 77.8
Msa0591770 AT4G10925.4 31.667 120 78 2 131 250 104 219 5.56e-17 77.8
Msa0591770 AT4G10925.5 31.667 120 78 2 131 250 104 219 5.56e-17 77.8
Msa0591770 AT4G10925.1 31.667 120 78 2 131 250 104 219 5.56e-17 77.8
Msa0591770 AT4G23960.2 29.839 124 76 3 135 255 73 188 6.13e-12 63.2

Find 61 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTAACTTATTTGGATTAA+AGG 0.134555 4_2:-16605880 None:intergenic
TTGCCAAAAGCTAACTTATT+TGG 0.143563 4_2:-16605888 None:intergenic
ATGCTAAAGCAGCAGAAATA+AGG 0.234285 4_2:+16606511 Msa0591770:CDS
AAATTTACAACAACCGAAAA+AGG 0.234734 4_2:-16605301 None:intergenic
AGCTTTGAGATGTGGATTAA+TGG 0.250409 4_2:+16607057 Msa0591770:three_prime_UTR
GATAGCAACACAGCAGTATT+TGG 0.251611 4_2:+16606558 Msa0591770:CDS
AATCCAAATAAGTTAGCTTT+TGG 0.283724 4_2:+16605885 Msa0591770:CDS
CAAGGAGTTCAGTTTCTTGC+CGG 0.285437 4_2:+16605809 Msa0591770:CDS
CTTTCTCTTTGTTTCATCAA+TGG 0.304765 4_2:+16604516 Msa0591770:five_prime_UTR
ATCGATGAGAGTACTGAAAA+TGG 0.305822 4_2:-16607182 None:intergenic
TCAGAATAAGAATCCTTATC+TGG 0.310991 4_2:+16605255 Msa0591770:intron
ATTAGATGAAAACACTTTAG+AGG 0.343894 4_2:+16606455 Msa0591770:CDS
TCTTCTAGTTTGATTTGTAA+TGG 0.367473 4_2:-16606750 None:intergenic
TTGAGAGCTGGGATTTCGTA+TGG 0.419032 4_2:+16606712 Msa0591770:CDS
TGCTAAAGCAGCAGAAATAA+GGG 0.421596 4_2:+16606512 Msa0591770:CDS
TGCACCTACCTATGAGCATT+TGG 0.423056 4_2:+16607228 Msa0591770:three_prime_UTR
TGCAACTTGAGGCATTGATT+AGG 0.431017 4_2:-16605945 None:intergenic
CCGGATATTCCTTTCATACC+AGG 0.479450 4_2:-16606675 None:intergenic
ATCTTCTCATTTGCAACTTG+AGG 0.480992 4_2:-16605956 None:intergenic
ATGTATCAATTCATATCTAC+TGG 0.481405 4_2:-16606921 None:intergenic
CCTGGTATGAAAGGAATATC+CGG 0.485068 4_2:+16606675 Msa0591770:CDS
AAATTGTTAAAATGAGTAAG+AGG 0.486196 4_2:-16606968 None:intergenic
TGCTGCTTCCAAATGCTCAT+AGG 0.486319 4_2:-16607236 None:intergenic
AATGTGTTCGAGAGGATCAA+TGG 0.487074 4_2:+16606867 Msa0591770:CDS
CTCAATAACATCATCATAGC+CGG 0.487596 4_2:-16606694 None:intergenic
GATGAAGTGCCTCCAGCCAC+AGG 0.493851 4_2:+16607086 Msa0591770:three_prime_UTR
GGCGACCTTGCAGCCATGCA+AGG 0.495354 4_2:+16606615 Msa0591770:CDS
CAGTCTTATTGCGCATAACA+TGG 0.501183 4_2:+16607257 Msa0591770:three_prime_UTR
ATGATGATGTTATTGAGAGC+TGG 0.502409 4_2:+16606700 Msa0591770:CDS
AAGGAGTTCAGTTTCTTGCC+GGG 0.510954 4_2:+16605810 Msa0591770:CDS
CTGAACATAAACACCAGATA+AGG 0.511267 4_2:-16605268 None:intergenic
ACATGCCTTGCATGGCTGCA+AGG 0.515179 4_2:-16606620 None:intergenic
GAGAAACCTTGTAACGGAAG+AGG 0.516416 4_2:-16604600 None:intergenic
GTTTCTGTCAGGGACACGAC+AGG 0.525904 4_2:+16606383 Msa0591770:intron
AGTTCATGCTAGAGGGGACA+TGG 0.526900 4_2:+16606779 Msa0591770:CDS
GACATTAAAGTTCATGCTAG+AGG 0.527041 4_2:+16606771 Msa0591770:CDS
GGGACTTTCTTCTACTCTCA+AGG 0.531322 4_2:+16605791 Msa0591770:intron
TTGCAGCCATGCAAGGCATG+TGG 0.533455 4_2:+16606622 Msa0591770:CDS
TGATGATGTTATTGAGAGCT+GGG 0.533980 4_2:+16606701 Msa0591770:CDS
ACATTAAAGTTCATGCTAGA+GGG 0.562565 4_2:+16606772 Msa0591770:CDS
TGCAGCCATGCAAGGCATGT+GGG 0.568080 4_2:+16606623 Msa0591770:CDS
TGAGAGCTGGGATTTCGTAT+GGG 0.571314 4_2:+16606713 Msa0591770:CDS
TCTTTAGAAGCTTTGAGATG+TGG 0.575010 4_2:+16607049 Msa0591770:three_prime_UTR
GAGGTATGTTGTGTTCATCC+TGG 0.582448 4_2:+16606657 Msa0591770:CDS
GTTAAAATGAGTAAGAGGAA+AGG 0.593250 4_2:-16606963 None:intergenic
CATGGGGTATGTTACATGCA+TGG 0.595261 4_2:+16606797 Msa0591770:CDS
GTTCATGCTAGAGGGGACAT+GGG 0.595900 4_2:+16606780 Msa0591770:CDS
AAGCTATTGATGACTGAACC+CGG 0.607031 4_2:-16605828 None:intergenic
GCTTCCAAATGCTCATAGGT+AGG 0.608016 4_2:-16607232 None:intergenic
TTGTAACGAATGTGTTCGAG+AGG 0.614427 4_2:+16606859 Msa0591770:CDS
TTTCTGTCAGGGACACGACA+GGG 0.615152 4_2:+16606384 Msa0591770:intron
CATTAAAGTTCATGCTAGAG+GGG 0.624713 4_2:+16606773 Msa0591770:CDS
TGTGTTCATCCTGGTATGAA+AGG 0.628945 4_2:+16606666 Msa0591770:CDS
ATGAAGTGCCTCCAGCCACA+GGG 0.630568 4_2:+16607087 Msa0591770:three_prime_UTR
ACGAAAGGAGGAAGATGGGG+AGG 0.630749 4_2:+16606831 Msa0591770:CDS
AAAACGAAAGGAGGAAGATG+GGG 0.635971 4_2:+16606828 Msa0591770:CDS
TTCATGCTAGAGGGGACATG+GGG 0.652035 4_2:+16606781 Msa0591770:CDS
AATTTGGAGAAACCTTGTAA+CGG 0.658112 4_2:-16604606 None:intergenic
TCGAGAGGATCAATGGCGAG+TGG 0.664074 4_2:+16606874 Msa0591770:CDS
GCTACAGCATGCAATTGCTG+AGG 0.668140 4_2:+16606482 Msa0591770:CDS
GGAGAGCATGTTGAGCAGTG+AGG 0.712787 4_2:+16606425 Msa0591770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATATATAACAATAATT+TGG - chr4_2:16604774-16604793 None:intergenic 10.0%
!! ATTATTGTTATATATGAATA+TGG + chr4_2:16604775-16604794 Msa0591770:intron 10.0%
!! TTATTGTTATATATGAATAT+GGG + chr4_2:16604776-16604795 Msa0591770:intron 10.0%
!! AAATAAGAATCAATTATATT+TGG - chr4_2:16605173-16605192 None:intergenic 10.0%
!!! TGCAATTTTTAATATTTGTT+GGG + chr4_2:16604637-16604656 Msa0591770:intron 15.0%
!!! AATTCTCTTTTAAGTTTTAA+GGG + chr4_2:16605428-16605447 Msa0591770:intron 15.0%
!! AATATACAGAAAAAATTTCT+AGG - chr4_2:16607002-16607021 None:intergenic 15.0%
!! AAATTGCAGAAAAAAGAATT+TGG - chr4_2:16604625-16604644 None:intergenic 20.0%
!!! CTGCAATTTTTAATATTTGT+TGG + chr4_2:16604636-16604655 Msa0591770:intron 20.0%
!! CAATAATTTGGAAAAGTAAA+AGG - chr4_2:16604762-16604781 None:intergenic 20.0%
!!! ATTAAGTTGTTTATTCAAAC+AGG + chr4_2:16605003-16605022 Msa0591770:intron 20.0%
!!! TTAAGTTGTTTATTCAAACA+GGG + chr4_2:16605004-16605023 Msa0591770:intron 20.0%
!!! TAAGTTTAATTCTGAAACAA+GGG - chr4_2:16605387-16605406 None:intergenic 20.0%
!!! ATAAGTTTAATTCTGAAACA+AGG - chr4_2:16605388-16605407 None:intergenic 20.0%
!!! GAATTCTCTTTTAAGTTTTA+AGG + chr4_2:16605427-16605446 Msa0591770:intron 20.0%
!!! TTTGATTTAACTACTTGAAA+TGG + chr4_2:16605532-16605551 Msa0591770:intron 20.0%
!! TACATAGAATTTCAATTGAA+TGG + chr4_2:16605600-16605619 Msa0591770:intron 20.0%
!!! AATTTTGTGTTTTTTCATGA+AGG + chr4_2:16605770-16605789 Msa0591770:intron 20.0%
!!! ATTTTGTGTTTTTTCATGAA+GGG + chr4_2:16605771-16605790 Msa0591770:intron 20.0%
!! TAACTTTATAAAATTGCCAT+TGG + chr4_2:16606361-16606380 Msa0591770:intron 20.0%
!! AAATTGTTAAAATGAGTAAG+AGG - chr4_2:16606971-16606990 None:intergenic 20.0%
!!! TGTTGATTTTGTTTACAAAG+TGG - chr4_2:16604545-16604564 None:intergenic 25.0%
!! TATTCTTCAATTTTGTTCCT+AGG + chr4_2:16604701-16604720 Msa0591770:intron 25.0%
! TAGGTATAAAACTCTCAAAA+GGG + chr4_2:16604720-16604739 Msa0591770:intron 25.0%
!! GCAATTTTCATAAGCTATAT+TGG - chr4_2:16604874-16604893 None:intergenic 25.0%
! CAGCTTATAACATTACAAAA+GGG - chr4_2:16604980-16604999 None:intergenic 25.0%
! AAATTTACAACAACCGAAAA+AGG - chr4_2:16605304-16605323 None:intergenic 25.0%
!! TGAATTAGCATTTTCAACTA+TGG + chr4_2:16605324-16605343 Msa0591770:exon 25.0%
! ATCTATCGAATTCAGAATTT+CGG + chr4_2:16605496-16605515 Msa0591770:intron 25.0%
! AACTACTTGAAATGGAAATT+TGG + chr4_2:16605540-16605559 Msa0591770:intron 25.0%
! TAGAATTTCAATTGAATGGT+TGG + chr4_2:16605604-16605623 Msa0591770:intron 25.0%
! CTTCAGTGAAATTCATAAAA+AGG - chr4_2:16605641-16605660 None:intergenic 25.0%
! AAACTACATAATCCTTGAAA+AGG - chr4_2:16605713-16605732 None:intergenic 25.0%
!! AATTAAAAAATTTGCTCACG+TGG + chr4_2:16605735-16605754 Msa0591770:intron 25.0%
! AGCTAACTTATTTGGATTAA+AGG - chr4_2:16605883-16605902 None:intergenic 25.0%
!!! AATCCAAATAAGTTAGCTTT+TGG + chr4_2:16605885-16605904 Msa0591770:CDS 25.0%
! AGTACCAATAAGAATCAAAA+GGG - chr4_2:16606005-16606024 None:intergenic 25.0%
! TAGTACCAATAAGAATCAAA+AGG - chr4_2:16606006-16606025 None:intergenic 25.0%
!!! TTCTTATTGGTACTACTTTT+TGG + chr4_2:16606011-16606030 Msa0591770:intron 25.0%
! ATCAAGACTATAGAAAGAAA+TGG - chr4_2:16606084-16606103 None:intergenic 25.0%
! ATAGTTAGTACAGAAAACTT+AGG - chr4_2:16606141-16606160 None:intergenic 25.0%
! TTTGTACTAAATAGTGTATC+GGG - chr4_2:16606253-16606272 None:intergenic 25.0%
! CTTTGTACTAAATAGTGTAT+CGG - chr4_2:16606254-16606273 None:intergenic 25.0%
!!! TACAAAGTACTGTCAAATAA+CGG + chr4_2:16606267-16606286 Msa0591770:intron 25.0%
! ATTAGATGAAAACACTTTAG+AGG + chr4_2:16606455-16606474 Msa0591770:CDS 25.0%
!! TTTTATGATTCATTCAGGAA+TGG + chr4_2:16606594-16606613 Msa0591770:CDS 25.0%
!!! TCTTCTAGTTTGATTTGTAA+TGG - chr4_2:16606753-16606772 None:intergenic 25.0%
! ATGGAATTTGTAAAAACGAA+AGG + chr4_2:16606816-16606835 Msa0591770:CDS 25.0%
! ATGTATCAATTCATATCTAC+TGG - chr4_2:16606924-16606943 None:intergenic 25.0%
!!! TCATTTTAACAATTTTGCTG+TGG + chr4_2:16606976-16606995 Msa0591770:three_prime_UTR 25.0%
TGAACAAAAAGCAAACTATG+TGG + chr4_2:16604471-16604490 Msa0591770:five_prime_UTR 30.0%
GAACAAAAAGCAAACTATGT+GGG + chr4_2:16604472-16604491 Msa0591770:five_prime_UTR 30.0%
! CTTTCTCTTTGTTTCATCAA+TGG + chr4_2:16604516-16604535 Msa0591770:five_prime_UTR 30.0%
AATTTGGAGAAACCTTGTAA+CGG - chr4_2:16604609-16604628 None:intergenic 30.0%
!! CTTTTGAGAGTTTTATACCT+AGG - chr4_2:16604721-16604740 None:intergenic 30.0%
CTAGGTATAAAACTCTCAAA+AGG + chr4_2:16604719-16604738 Msa0591770:intron 30.0%
! GAATATGGGTTTGTTTGAAT+TGG + chr4_2:16604790-16604809 Msa0591770:intron 30.0%
GCAGCTTATAACATTACAAA+AGG - chr4_2:16604981-16605000 None:intergenic 30.0%
TGATCCTACTCAATCAATAT+TGG - chr4_2:16605030-16605049 None:intergenic 30.0%
TCAGAATAAGAATCCTTATC+TGG + chr4_2:16605255-16605274 Msa0591770:intron 30.0%
TTTCTGCAAAATTATCGCTT+AGG + chr4_2:16605451-16605470 Msa0591770:intron 30.0%
TCTATCGAATTCAGAATTTC+GGG + chr4_2:16605497-16605516 Msa0591770:intron 30.0%
CTTGAAATGGAAATTTGGAA+TGG + chr4_2:16605545-16605564 Msa0591770:intron 30.0%
GTAAAAAAAAATCCAACTCC+CGG - chr4_2:16605583-16605602 None:intergenic 30.0%
! CGATATGTTTTTCCTTTTCA+AGG + chr4_2:16605698-16605717 Msa0591770:intron 30.0%
TTGCCAAAAGCTAACTTATT+TGG - chr4_2:16605891-16605910 None:intergenic 30.0%
!!! TTTGGCAAAAGTTTTGAAAG+AGG + chr4_2:16605903-16605922 Msa0591770:CDS 30.0%
GTCCTATTATATTTGCATCT+AGG + chr4_2:16606113-16606132 Msa0591770:intron 30.0%
AGCCTAGATGCAAATATAAT+AGG - chr4_2:16606118-16606137 None:intergenic 30.0%
! TTATAAGTGTCGTCAAATAG+CGG + chr4_2:16606184-16606203 Msa0591770:intron 30.0%
TTGTTAATTGCGAAGAATAG+AGG - chr4_2:16606338-16606357 None:intergenic 30.0%
!! GCAAGTTTTATGATTCATTC+AGG + chr4_2:16606589-16606608 Msa0591770:CDS 30.0%
ACATTAAAGTTCATGCTAGA+GGG + chr4_2:16606772-16606791 Msa0591770:CDS 30.0%
GAATTTGTAAAAACGAAAGG+AGG + chr4_2:16606819-16606838 Msa0591770:CDS 30.0%
GTTAAAATGAGTAAGAGGAA+AGG - chr4_2:16606966-16606985 None:intergenic 30.0%
!! AAAAAGCGCAGTGCAAATTT+TGG - chr4_2:16604573-16604592 None:intergenic 35.0%
CTGAACATAAACACCAGATA+AGG - chr4_2:16605271-16605290 None:intergenic 35.0%
AAGAAGTCTCACTTCATGAA+TGG + chr4_2:16605658-16605677 Msa0591770:intron 35.0%
TCATGAATGGTTGAGGAATA+AGG + chr4_2:16605671-16605690 Msa0591770:intron 35.0%
ATCTTCTCATTTGCAACTTG+AGG - chr4_2:16605959-16605978 None:intergenic 35.0%
!! CGAACCCTTTTGATTCTTAT+TGG + chr4_2:16605998-16606017 Msa0591770:intron 35.0%
ATAGTGTATCGGGATAATAG+TGG - chr4_2:16606243-16606262 None:intergenic 35.0%
ATGCTAAAGCAGCAGAAATA+AGG + chr4_2:16606511-16606530 Msa0591770:CDS 35.0%
TGCTAAAGCAGCAGAAATAA+GGG + chr4_2:16606512-16606531 Msa0591770:CDS 35.0%
!! CTGTGTTGCTATCTTTTTGT+AGG - chr4_2:16606551-16606570 None:intergenic 35.0%
CTCAATAACATCATCATAGC+CGG - chr4_2:16606697-16606716 None:intergenic 35.0%
! ATGATGATGTTATTGAGAGC+TGG + chr4_2:16606700-16606719 Msa0591770:CDS 35.0%
! TGATGATGTTATTGAGAGCT+GGG + chr4_2:16606701-16606720 Msa0591770:CDS 35.0%
GACATTAAAGTTCATGCTAG+AGG + chr4_2:16606771-16606790 Msa0591770:CDS 35.0%
CATTAAAGTTCATGCTAGAG+GGG + chr4_2:16606773-16606792 Msa0591770:CDS 35.0%
TAAAAACGAAAGGAGGAAGA+TGG + chr4_2:16606826-16606845 Msa0591770:CDS 35.0%
AAAAACGAAAGGAGGAAGAT+GGG + chr4_2:16606827-16606846 Msa0591770:CDS 35.0%
!! TCTTTAGAAGCTTTGAGATG+TGG + chr4_2:16607049-16607068 Msa0591770:three_prime_UTR 35.0%
!! AGCTTTGAGATGTGGATTAA+TGG + chr4_2:16607057-16607076 Msa0591770:three_prime_UTR 35.0%
GGAAAAACATGTTCATGGTT+AGG + chr4_2:16607108-16607127 Msa0591770:three_prime_UTR 35.0%
!! GTTCATGGTTAGGTTTTATG+TGG + chr4_2:16607118-16607137 Msa0591770:three_prime_UTR 35.0%
!! ATCGATGAGAGTACTGAAAA+TGG - chr4_2:16607185-16607204 None:intergenic 35.0%
! GATTTTCCTCTTCCGTTACA+AGG + chr4_2:16604594-16604613 Msa0591770:five_prime_UTR 40.0%
! AGGGCCAATATTGATTGAGT+AGG + chr4_2:16605023-16605042 Msa0591770:intron 40.0%
GTACACAGCAATGCAATTTC+AGG + chr4_2:16605195-16605214 Msa0591770:intron 40.0%
! AGCAATGCAATTTCAGGTGA+AGG + chr4_2:16605201-16605220 Msa0591770:intron 40.0%
GGAATGGTTTATAACTCCTC+CGG + chr4_2:16605561-16605580 Msa0591770:intron 40.0%
GAATGGTTTATAACTCCTCC+GGG + chr4_2:16605562-16605581 Msa0591770:intron 40.0%
AAAAAAAATCCAACTCCCGG+AGG - chr4_2:16605580-16605599 None:intergenic 40.0%
TCTCACTTCATGAATGGTTG+AGG + chr4_2:16605664-16605683 Msa0591770:intron 40.0%
! AAATTTGCTCACGTGGTTCA+TGG + chr4_2:16605742-16605761 Msa0591770:intron 40.0%
! AAGCTATTGATGACTGAACC+CGG - chr4_2:16605831-16605850 None:intergenic 40.0%
!! TGCAACTTGAGGCATTGATT+AGG - chr4_2:16605948-16605967 None:intergenic 40.0%
AATCAAAAGGGTTCGAGCAA+AGG - chr4_2:16605993-16606012 None:intergenic 40.0%
!! AATTGCCATTGGTTTCTGTC+AGG + chr4_2:16606372-16606391 Msa0591770:intron 40.0%
!! ATTGCCATTGGTTTCTGTCA+GGG + chr4_2:16606373-16606392 Msa0591770:intron 40.0%
GATAGCAACACAGCAGTATT+TGG + chr4_2:16606558-16606577 Msa0591770:CDS 40.0%
TGTGTTCATCCTGGTATGAA+AGG + chr4_2:16606666-16606685 Msa0591770:CDS 40.0%
CCTGGTATGAAAGGAATATC+CGG + chr4_2:16606675-16606694 Msa0591770:CDS 40.0%
AAAACGAAAGGAGGAAGATG+GGG + chr4_2:16606828-16606847 Msa0591770:CDS 40.0%
TTGTAACGAATGTGTTCGAG+AGG + chr4_2:16606859-16606878 Msa0591770:CDS 40.0%
AATGTGTTCGAGAGGATCAA+TGG + chr4_2:16606867-16606886 Msa0591770:CDS 40.0%
! CATGAACATGTTTTTCCCTG+TGG - chr4_2:16607105-16607124 None:intergenic 40.0%
CACAGGGAAAAACATGTTCA+TGG + chr4_2:16607103-16607122 Msa0591770:three_prime_UTR 40.0%
!! CAGTCTTATTGCGCATAACA+TGG + chr4_2:16607257-16607276 Msa0591770:three_prime_UTR 40.0%
! GAGAAACCTTGTAACGGAAG+AGG - chr4_2:16604603-16604622 None:intergenic 45.0%
TTTATAACTCCTCCGGGAGT+TGG + chr4_2:16605568-16605587 Msa0591770:intron 45.0%
GGGACTTTCTTCTACTCTCA+AGG + chr4_2:16605791-16605810 Msa0591770:intron 45.0%
CAAGGAGTTCAGTTTCTTGC+CGG + chr4_2:16605809-16605828 Msa0591770:CDS 45.0%
AAGGAGTTCAGTTTCTTGCC+GGG + chr4_2:16605810-16605829 Msa0591770:CDS 45.0%
ATTTCGCTATGCTACAGTGC+TGG - chr4_2:16606306-16606325 None:intergenic 45.0%
GGGTGTAAAAAGTGAAGACG+CGG + chr4_2:16606404-16606423 Msa0591770:CDS 45.0%
GAGGTATGTTGTGTTCATCC+TGG + chr4_2:16606657-16606676 Msa0591770:CDS 45.0%
CCGGATATTCCTTTCATACC+AGG - chr4_2:16606678-16606697 None:intergenic 45.0%
TTGAGAGCTGGGATTTCGTA+TGG + chr4_2:16606712-16606731 Msa0591770:CDS 45.0%
TGAGAGCTGGGATTTCGTAT+GGG + chr4_2:16606713-16606732 Msa0591770:CDS 45.0%
CATGGGGTATGTTACATGCA+TGG + chr4_2:16606797-16606816 Msa0591770:CDS 45.0%
! AACATGTTTTTCCCTGTGGC+TGG - chr4_2:16607101-16607120 None:intergenic 45.0%
TGCACCTACCTATGAGCATT+TGG + chr4_2:16607228-16607247 Msa0591770:three_prime_UTR 45.0%
GCTTCCAAATGCTCATAGGT+AGG - chr4_2:16607235-16607254 None:intergenic 45.0%
! TGCTGCTTCCAAATGCTCAT+AGG - chr4_2:16607239-16607258 None:intergenic 45.0%
! CAGCTGATGCGAGCCTTTTT+CGG + chr4_2:16605288-16605307 Msa0591770:five_prime_UTR 50.0%
GTGTCCCTGACAGAAACCAA+TGG - chr4_2:16606380-16606399 None:intergenic 50.0%
TTTCTGTCAGGGACACGACA+GGG + chr4_2:16606384-16606403 Msa0591770:intron 50.0%
GCTACAGCATGCAATTGCTG+AGG + chr4_2:16606482-16606501 Msa0591770:CDS 50.0%
! TTTTGCCCACATGCCTTGCA+TGG - chr4_2:16606631-16606650 None:intergenic 50.0%
GCAAGGCATGTGGGCAAAAA+CGG + chr4_2:16606632-16606651 Msa0591770:CDS 50.0%
AGTTCATGCTAGAGGGGACA+TGG + chr4_2:16606779-16606798 Msa0591770:CDS 50.0%
GTTCATGCTAGAGGGGACAT+GGG + chr4_2:16606780-16606799 Msa0591770:CDS 50.0%
TTCATGCTAGAGGGGACATG+GGG + chr4_2:16606781-16606800 Msa0591770:CDS 50.0%
! ATGTTTTTCCCTGTGGCTGG+AGG - chr4_2:16607098-16607117 None:intergenic 50.0%
GTTTCTGTCAGGGACACGAC+AGG + chr4_2:16606383-16606402 Msa0591770:intron 55.0%
! GGAGAGCATGTTGAGCAGTG+AGG + chr4_2:16606425-16606444 Msa0591770:CDS 55.0%
ACATGCCTTGCATGGCTGCA+AGG - chr4_2:16606623-16606642 None:intergenic 55.0%
TTGCAGCCATGCAAGGCATG+TGG + chr4_2:16606622-16606641 Msa0591770:CDS 55.0%
TGCAGCCATGCAAGGCATGT+GGG + chr4_2:16606623-16606642 Msa0591770:CDS 55.0%
CATGTGGGCAAAAACGGACG+AGG + chr4_2:16606638-16606657 Msa0591770:CDS 55.0%
ACGAAAGGAGGAAGATGGGG+AGG + chr4_2:16606831-16606850 Msa0591770:CDS 55.0%
TCGAGAGGATCAATGGCGAG+TGG + chr4_2:16606874-16606893 Msa0591770:CDS 55.0%
! ATGAAGTGCCTCCAGCCACA+GGG + chr4_2:16607087-16607106 Msa0591770:three_prime_UTR 55.0%
! GATGAAGTGCCTCCAGCCAC+AGG + chr4_2:16607086-16607105 Msa0591770:three_prime_UTR 60.0%
GGCGACCTTGCAGCCATGCA+AGG + chr4_2:16606615-16606634 Msa0591770:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 16604465 16607304 16604465 ID=Msa0591770;Name=Msa0591770
chr4_2 mRNA 16604465 16607304 16604465 ID=Msa0591770-mRNA-1;Parent=Msa0591770;Name=Msa0591770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=235|1|1|1|0.66|0.5|4|366|255
chr4_2 exon 16604465 16604615 16604465 ID=Msa0591770-mRNA-1:exon:4782;Parent=Msa0591770-mRNA-1
chr4_2 exon 16605259 16605375 16605259 ID=Msa0591770-mRNA-1:exon:4783;Parent=Msa0591770-mRNA-1
chr4_2 exon 16605792 16605981 16605792 ID=Msa0591770-mRNA-1:exon:4784;Parent=Msa0591770-mRNA-1
chr4_2 exon 16606394 16607304 16606394 ID=Msa0591770-mRNA-1:exon:4785;Parent=Msa0591770-mRNA-1
chr4_2 five_prime_UTR 16604465 16604615 16604465 ID=Msa0591770-mRNA-1:five_prime_utr;Parent=Msa0591770-mRNA-1
chr4_2 five_prime_UTR 16605259 16605342 16605259 ID=Msa0591770-mRNA-1:five_prime_utr;Parent=Msa0591770-mRNA-1
chr4_2 CDS 16605343 16605375 16605343 ID=Msa0591770-mRNA-1:cds;Parent=Msa0591770-mRNA-1
chr4_2 CDS 16605792 16605981 16605792 ID=Msa0591770-mRNA-1:cds;Parent=Msa0591770-mRNA-1
chr4_2 CDS 16606394 16606938 16606394 ID=Msa0591770-mRNA-1:cds;Parent=Msa0591770-mRNA-1
chr4_2 three_prime_UTR 16606939 16607304 16606939 ID=Msa0591770-mRNA-1:three_prime_utr;Parent=Msa0591770-mRNA-1
Gene Sequence

>Msa0591770

ATGGCGCTTTATGCAACTGCGTTATCGTTCAACGGACTTTCTTCTACTCTCAAGGAGTTCAGTTTCTTGCCGGGTTCAGTCATCAATAGCTTTCACAAGCGACATGATGTTTGTCTGCAATCCTTTAATCCAAATAAGTTAGCTTTTGGCAAAAGTTTTGAAAGAGGAGACGAACTGTGTTTGTTGCCTAATCAATGCCTCAAGTTGCAAATGAGAAGATTCAGGACACGACAGGGTGTAAAAAGTGAAGACGCGGAGAGCATGTTGAGCAGTGAGGACATTGCATTAGATGAAAACACTTTAGAGGAAGAGCTACAGCATGCAATTGCTGAGGAGAATTATGCTAAAGCAGCAGAAATAAGGGATACACTAAAAAACCTACAAAAAGATAGCAACACAGCAGTATTTGGAGCAAACAGCAAGTTTTATGATTCATTCAGGAATGGCGACCTTGCAGCCATGCAAGGCATGTGGGCAAAAACGGACGAGGTATGTTGTGTTCATCCTGGTATGAAAGGAATATCCGGCTATGATGATGTTATTGAGAGCTGGGATTTCGTATGGGCTAACTATGAATTTCCATTACAAATCAAACTAGAAGACATTAAAGTTCATGCTAGAGGGGACATGGGGTATGTTACATGCATGGAATTTGTAAAAACGAAAGGAGGAAGATGGGGAGGACAATTTGTAACGAATGTGTTCGAGAGGATCAATGGCGAGTGGTTTATTTGTAATCATCATGCTTCACCAGTAGATATGAATTGA

Protein sequence

>Msa0591770

MALYATALSFNGLSSTLKEFSFLPGSVINSFHKRHDVCLQSFNPNKLAFGKSFERGDELCLLPNQCLKLQMRRFRTRQGVKSEDAESMLSSEDIALDENTLEEELQHAIAEENYAKAAEIRDTLKNLQKDSNTAVFGANSKFYDSFRNGDLAAMQGMWAKTDEVCCVHPGMKGISGYDDVIESWDFVWANYEFPLQIKLEDIKVHARGDMGYVTCMEFVKTKGGRWGGQFVTNVFERINGEWFICNHHASPVDMN*