AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0535030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0535030 MtrunA17_Chr4g0008871 98.039 255 5 0 1 255 1 255 0.0 526
Msa0535030 MtrunA17_Chr8g0388401 25.610 246 152 6 5 250 57 271 3.66e-19 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0535030 AT3G09250.3 61.140 193 69 3 67 254 39 230 1.05e-84 252
Msa0535030 AT3G09250.1 61.140 193 69 3 67 254 53 244 1.80e-84 252
Msa0535030 AT3G09250.2 59.341 182 68 3 67 243 39 219 3.30e-75 229
Msa0535030 AT4G10925.3 31.667 120 78 2 131 250 104 219 5.68e-17 77.8
Msa0535030 AT4G10925.2 31.667 120 78 2 131 250 104 219 5.68e-17 77.8
Msa0535030 AT4G10925.4 31.667 120 78 2 131 250 104 219 5.68e-17 77.8
Msa0535030 AT4G10925.5 31.667 120 78 2 131 250 104 219 5.68e-17 77.8
Msa0535030 AT4G10925.1 31.667 120 78 2 131 250 104 219 5.68e-17 77.8
Msa0535030 AT4G23960.2 29.839 124 76 3 135 255 73 188 6.19e-12 63.2

Find 61 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTAACTTATTTGGATTAA+AGG 0.134555 4_1:+10835450 None:intergenic
TTGCCAAAAGCTAACTTATT+TGG 0.143563 4_1:+10835442 None:intergenic
ATCGATGAGATTACTGAAAA+TGG 0.205967 4_1:+10834148 None:intergenic
ATGCTAAAGCAGCAGAAATA+AGG 0.234285 4_1:-10834819 Msa0535030:CDS
AAATTTACAACAACCGAAAA+AGG 0.234734 4_1:+10836029 None:intergenic
AGCTTTGAGATGTGGATTAA+TGG 0.250409 4_1:-10834273 Msa0535030:three_prime_UTR
GATAGCAACACAGCAGTATT+TGG 0.251611 4_1:-10834772 Msa0535030:CDS
AATCCAAATAAGTTAGCTTT+TGG 0.283724 4_1:-10835445 Msa0535030:CDS
CAAGGAGTTCAGTTTCTTGC+CGG 0.285437 4_1:-10835521 Msa0535030:CDS
CTTTCTCTTTGTTTCATCAA+TGG 0.304765 4_1:-10836814 Msa0535030:five_prime_UTR
TCAGAATAAGAATCCTTATC+TGG 0.310991 4_1:-10836075 Msa0535030:intron
ATTAGATGAAAACACTTTAG+AGG 0.343894 4_1:-10834875 Msa0535030:CDS
TCTTCTAGTTTGATTTGTAA+TGG 0.367473 4_1:+10834580 None:intergenic
GTTCAGTTTCTTGCCGGGTT+CGG 0.410478 4_1:-10835515 Msa0535030:CDS
TTGAGAGCTGGGATTTCGTA+TGG 0.419032 4_1:-10834618 Msa0535030:CDS
TGCTAAAGCAGCAGAAATAA+GGG 0.421596 4_1:-10834818 Msa0535030:CDS
TGCACCTACCTATGAGCATT+TGG 0.423056 4_1:-10834102 Msa0535030:three_prime_UTR
TGCAACTTGAGGCATTGATT+AGG 0.431017 4_1:+10835385 None:intergenic
ATCTTCTCATTTGCAACTTG+AGG 0.480992 4_1:+10835374 None:intergenic
CCGGATATTCCTTTCATGCC+AGG 0.481022 4_1:+10834655 None:intergenic
ATGTATCAATTCATATCTAC+TGG 0.481405 4_1:+10834409 None:intergenic
AAATTGTTAAAATGAGTAAG+AGG 0.486196 4_1:+10834362 None:intergenic
TGCTGCTTCCAAATGCTCAT+AGG 0.486319 4_1:+10834094 None:intergenic
CCTGGCATGAAAGGAATATC+CGG 0.486954 4_1:-10834655 Msa0535030:CDS
AATGTGTTCGAGAGGATCAA+TGG 0.487074 4_1:-10834463 Msa0535030:CDS
CTCAATAACATCATCATAGC+CGG 0.487596 4_1:+10834636 None:intergenic
GATGAAGTGCCTCCAGCCAC+AGG 0.493851 4_1:-10834244 Msa0535030:three_prime_UTR
GGCGACCTTGCAGCCATGCA+AGG 0.495354 4_1:-10834715 Msa0535030:CDS
ATGATGATGTTATTGAGAGC+TGG 0.502409 4_1:-10834630 Msa0535030:CDS
AAGGAGTTCAGTTTCTTGCC+GGG 0.510954 4_1:-10835520 Msa0535030:CDS
CTGAACATAAACACCAGATA+AGG 0.511267 4_1:+10836062 None:intergenic
ACATGCCTTGCATGGCTGCA+AGG 0.515179 4_1:+10834710 None:intergenic
GAGAAACCTTGTAACGGAAG+AGG 0.516416 4_1:+10836730 None:intergenic
GTTTCTGTCAGGGACACGAC+AGG 0.525904 4_1:-10834947 Msa0535030:intron
AGTTCATGCTAGAGGGGACA+TGG 0.526900 4_1:-10834551 Msa0535030:CDS
GACATTAAAGTTCATGCTAG+AGG 0.527041 4_1:-10834559 Msa0535030:CDS
CAGTCTTATTGCACATAACA+TGG 0.528861 4_1:-10834073 Msa0535030:three_prime_UTR
TTGCAGCCATGCAAGGCATG+TGG 0.533455 4_1:-10834708 Msa0535030:CDS
TGATGATGTTATTGAGAGCT+GGG 0.533980 4_1:-10834629 Msa0535030:CDS
GGGACTTTATTCTACTCTCA+AGG 0.545085 4_1:-10835539 Msa0535030:CDS
ACATTAAAGTTCATGCTAGA+GGG 0.562565 4_1:-10834558 Msa0535030:CDS
AAGCTATTGATGACCGAACC+CGG 0.564308 4_1:+10835502 None:intergenic
TGCAGCCATGCAAGGCATGT+GGG 0.568080 4_1:-10834707 Msa0535030:CDS
CATGGGGTACGTTACATGCA+TGG 0.569214 4_1:-10834533 Msa0535030:CDS
TGAGAGCTGGGATTTCGTAT+GGG 0.571314 4_1:-10834617 Msa0535030:CDS
TCTTTAGAAGCTTTGAGATG+TGG 0.575010 4_1:-10834281 Msa0535030:three_prime_UTR
GAGGTATGTTGTGTTCATCC+TGG 0.578040 4_1:-10834673 Msa0535030:CDS
GTTCATGCTAGAGGGGACAT+GGG 0.595900 4_1:-10834550 Msa0535030:CDS
GCTTCCAAATGCTCATAGGT+AGG 0.608016 4_1:+10834098 None:intergenic
TTGTAACGAATGTGTTCGAG+AGG 0.614427 4_1:-10834471 Msa0535030:CDS
TTTCTGTCAGGGACACGACA+GGG 0.615152 4_1:-10834946 Msa0535030:intron
CATTAAAGTTCATGCTAGAG+GGG 0.624713 4_1:-10834557 Msa0535030:CDS
ATGAAGTGCCTCCAGCCACA+GGG 0.630568 4_1:-10834243 Msa0535030:three_prime_UTR
ACGAAAGGAGGAAGATGGGG+AGG 0.630749 4_1:-10834499 Msa0535030:CDS
AAAACGAAAGGAGGAAGATG+GGG 0.635971 4_1:-10834502 Msa0535030:CDS
TGTGTTCATCCTGGCATGAA+AGG 0.643547 4_1:-10834664 Msa0535030:CDS
TTCATGCTAGAGGGGACATG+GGG 0.651188 4_1:-10834549 Msa0535030:CDS
AATTTGGAGAAACCTTGTAA+CGG 0.658112 4_1:+10836724 None:intergenic
TCGAGAGGATCAATGGCGAG+TGG 0.664074 4_1:-10834456 Msa0535030:CDS
GCTACAGCATGCAATTGCTG+AGG 0.668140 4_1:-10834848 Msa0535030:CDS
GGAGAGCATGTTGAGCAGTG+AGG 0.712787 4_1:-10834905 Msa0535030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATATATAACAATAATT+TGG + chr4_1:10834361-10834380 None:intergenic 10.0%
!! ATTATTGTTATATATGAATA+TGG - chr4_1:10834362-10834381 Msa0535030:three_prime_UTR 10.0%
!! TTATTGTTATATATGAATAT+GGG - chr4_1:10834363-10834382 Msa0535030:three_prime_UTR 10.0%
!! AAATAAGAATCAATTATATT+TGG + chr4_1:10834760-10834779 None:intergenic 10.0%
!!! TGCAATTTTTAATATTTGTT+GGG - chr4_1:10834224-10834243 Msa0535030:three_prime_UTR 15.0%
!!! AATTCTCTTTTAAGTTTTAA+GGG - chr4_1:10835015-10835034 Msa0535030:intron 15.0%
!! AATATACAGAAAAAATTTCT+AGG + chr4_1:10836589-10836608 None:intergenic 15.0%
!!! TATTGATTTTGTTTACAAAG+TGG + chr4_1:10834132-10834151 None:intergenic 20.0%
!! AAATTGCAGAAAAAAGAATT+TGG + chr4_1:10834212-10834231 None:intergenic 20.0%
!!! CTGCAATTTTTAATATTTGT+TGG - chr4_1:10834223-10834242 Msa0535030:three_prime_UTR 20.0%
!! CAATAATTTGGAAAAGTAAA+AGG + chr4_1:10834349-10834368 None:intergenic 20.0%
!!! ATTAAGTTGTTTATTCAAAC+AGG - chr4_1:10834590-10834609 Msa0535030:CDS 20.0%
!!! TTAAGTTGTTTATTCAAACA+GGG - chr4_1:10834591-10834610 Msa0535030:CDS 20.0%
!!! GAATTCTCTTTTAAGTTTTA+AGG - chr4_1:10835014-10835033 Msa0535030:intron 20.0%
!!! TTTGATTTAACTACTTGAAA+TGG - chr4_1:10835119-10835138 Msa0535030:intron 20.0%
!! TACATAGAATTTCAATTGAA+TGG - chr4_1:10835187-10835206 Msa0535030:intron 20.0%
!!! AATTTTGTGTTTTTTCATGA+AGG - chr4_1:10835357-10835376 Msa0535030:intron 20.0%
!!! ATTTTGTGTTTTTTCATGAA+GGG - chr4_1:10835358-10835377 Msa0535030:intron 20.0%
!! TAACTTTATAAAATTGCCAT+TGG - chr4_1:10835948-10835967 Msa0535030:intron 20.0%
!! AAATTGTTAAAATGAGTAAG+AGG + chr4_1:10836558-10836577 None:intergenic 20.0%
!!! TCATTTTAACAATTTTGTTG+TGG - chr4_1:10836563-10836582 Msa0535030:intron 20.0%
!! TATTCTTCAATTTTGTTCCT+AGG - chr4_1:10834288-10834307 Msa0535030:three_prime_UTR 25.0%
! TAGGTATAAAACTCTCAAAA+GGG - chr4_1:10834307-10834326 Msa0535030:three_prime_UTR 25.0%
!! GCAATTTTCATAAGCTATAT+TGG + chr4_1:10834461-10834480 None:intergenic 25.0%
! CAGCTTATAACATTACAAAA+GGG + chr4_1:10834567-10834586 None:intergenic 25.0%
! AAATTTACAACAACCGAAAA+AGG + chr4_1:10834891-10834910 None:intergenic 25.0%
!!! TAAGTGTAATTCTGAAACAA+GGG + chr4_1:10834974-10834993 None:intergenic 25.0%
!!! ATAAGTGTAATTCTGAAACA+AGG + chr4_1:10834975-10834994 None:intergenic 25.0%
! ATCTATCGAATTCAGAATTT+CGG - chr4_1:10835083-10835102 Msa0535030:intron 25.0%
! AACTACTTGAAATGGAAATT+TGG - chr4_1:10835127-10835146 Msa0535030:intron 25.0%
! TAGAATTTCAATTGAATGGT+TGG - chr4_1:10835191-10835210 Msa0535030:intron 25.0%
! CTTCAGTGAAATTCATAAAA+AGG + chr4_1:10835228-10835247 None:intergenic 25.0%
!!! CGATATGTTTTTCTTTTTCA+AGG - chr4_1:10835285-10835304 Msa0535030:intron 25.0%
!! AATTTAAAAATTTGCTCACG+TGG - chr4_1:10835322-10835341 Msa0535030:intron 25.0%
! AGCTAACTTATTTGGATTAA+AGG + chr4_1:10835470-10835489 None:intergenic 25.0%
!!! AATCCAAATAAGTTAGCTTT+TGG - chr4_1:10835472-10835491 Msa0535030:CDS 25.0%
! AGTACCAATAAGAATCAAAA+GGG + chr4_1:10835592-10835611 None:intergenic 25.0%
! TAGTACCAATAAGAATCAAA+AGG + chr4_1:10835593-10835612 None:intergenic 25.0%
!!! TTCTTATTGGTACTACTTTT+TGG - chr4_1:10835598-10835617 Msa0535030:intron 25.0%
! ATCAAGACTATAGAAAGAAA+TGG + chr4_1:10835671-10835690 None:intergenic 25.0%
! ATAGTTAGTACAGAAAACTT+AGG + chr4_1:10835728-10835747 None:intergenic 25.0%
! TTTGTACTAAATAGTGTATC+GGG + chr4_1:10835840-10835859 None:intergenic 25.0%
! CTTTGTACTAAATAGTGTAT+CGG + chr4_1:10835841-10835860 None:intergenic 25.0%
!!! TACAAAGTACTGTCAAATAA+CGG - chr4_1:10835854-10835873 Msa0535030:intron 25.0%
! ATTAGATGAAAACACTTTAG+AGG - chr4_1:10836042-10836061 Msa0535030:five_prime_UTR 25.0%
!! TTTTATGATTCATTCAGGAA+TGG - chr4_1:10836181-10836200 Msa0535030:intron 25.0%
!!! TCTTCTAGTTTGATTTGTAA+TGG + chr4_1:10836340-10836359 None:intergenic 25.0%
! ATGGAATTTGTAAAAACGAA+AGG - chr4_1:10836403-10836422 Msa0535030:intron 25.0%
! ATGTATCAATTCATATCTAC+TGG + chr4_1:10836511-10836530 None:intergenic 25.0%
! CTTTCTCTTTGTTTCATCAA+TGG - chr4_1:10834103-10834122 Msa0535030:three_prime_UTR 30.0%
AATTTGGAGAAACCTTGTAA+CGG + chr4_1:10834196-10834215 None:intergenic 30.0%
!! CTTTTGAGAGTTTTATACCT+AGG + chr4_1:10834308-10834327 None:intergenic 30.0%
CTAGGTATAAAACTCTCAAA+AGG - chr4_1:10834306-10834325 Msa0535030:three_prime_UTR 30.0%
GCAGCTTATAACATTACAAA+AGG + chr4_1:10834568-10834587 None:intergenic 30.0%
TGATCCTACTCAATCAATAT+TGG + chr4_1:10834617-10834636 None:intergenic 30.0%
TCAGAATAAGAATCCTTATC+TGG - chr4_1:10834842-10834861 Msa0535030:CDS 30.0%
! TGAACTAGCATTTTCAACTA+TGG - chr4_1:10834911-10834930 Msa0535030:CDS 30.0%
TTTCTGCAAAATTATCGCTT+AGG - chr4_1:10835038-10835057 Msa0535030:intron 30.0%
TCTATCGAATTCAGAATTTC+GGG - chr4_1:10835084-10835103 Msa0535030:intron 30.0%
CTTGAAATGGAAATTTGGAA+TGG - chr4_1:10835132-10835151 Msa0535030:intron 30.0%
GTAAAAAAAAATCCAACTCC+CGG + chr4_1:10835170-10835189 None:intergenic 30.0%
TTGCCAAAAGCTAACTTATT+TGG + chr4_1:10835478-10835497 None:intergenic 30.0%
!!! TTTGGCAAAAGTTTTGAAAG+AGG - chr4_1:10835490-10835509 Msa0535030:CDS 30.0%
GTCCTATTATATTTGCATCT+AGG - chr4_1:10835700-10835719 Msa0535030:intron 30.0%
AGCCTAGATGCAAATATAAT+AGG + chr4_1:10835705-10835724 None:intergenic 30.0%
! TTATAAGTGTCGTCAAATAG+CGG - chr4_1:10835771-10835790 Msa0535030:intron 30.0%
TTGTTAATTGCGAAGAATAG+AGG + chr4_1:10835925-10835944 None:intergenic 30.0%
!! GCAAGTTTTATGATTCATTC+AGG - chr4_1:10836176-10836195 Msa0535030:intron 30.0%
ACATTAAAGTTCATGCTAGA+GGG - chr4_1:10836359-10836378 Msa0535030:intron 30.0%
GAATTTGTAAAAACGAAAGG+AGG - chr4_1:10836406-10836425 Msa0535030:intron 30.0%
ATCGATGAGATTACTGAAAA+TGG + chr4_1:10836772-10836791 None:intergenic 30.0%
! TGAACAAAAAGCACACTATG+TGG - chr4_1:10834054-10834073 Msa0535030:three_prime_UTR 35.0%
! GAACAAAAAGCACACTATGT+GGG - chr4_1:10834055-10834074 Msa0535030:three_prime_UTR 35.0%
!! AAAAAGCGCAGTGCAAATTT+TGG + chr4_1:10834160-10834179 None:intergenic 35.0%
CTGAACATAAACACCAGATA+AGG + chr4_1:10834858-10834877 None:intergenic 35.0%
AAGAAGTCTCACTTCATGAA+TGG - chr4_1:10835245-10835264 Msa0535030:intron 35.0%
TCATGAATGGTTGAGGAATA+AGG - chr4_1:10835258-10835277 Msa0535030:intron 35.0%
ATCTTCTCATTTGCAACTTG+AGG + chr4_1:10835546-10835565 None:intergenic 35.0%
!! CGAACCCTTTTGATTCTTAT+TGG - chr4_1:10835585-10835604 Msa0535030:intron 35.0%
ATAGTGTATCGGGATAATAG+TGG + chr4_1:10835830-10835849 None:intergenic 35.0%
ATGCTAAAGCAGCAGAAATA+AGG - chr4_1:10836098-10836117 Msa0535030:intron 35.0%
TGCTAAAGCAGCAGAAATAA+GGG - chr4_1:10836099-10836118 Msa0535030:intron 35.0%
!! CTGTGTTGCTATCTTTTTGT+AGG + chr4_1:10836138-10836157 None:intergenic 35.0%
CTCAATAACATCATCATAGC+CGG + chr4_1:10836284-10836303 None:intergenic 35.0%
! ATGATGATGTTATTGAGAGC+TGG - chr4_1:10836287-10836306 Msa0535030:intron 35.0%
! TGATGATGTTATTGAGAGCT+GGG - chr4_1:10836288-10836307 Msa0535030:intron 35.0%
GACATTAAAGTTCATGCTAG+AGG - chr4_1:10836358-10836377 Msa0535030:intron 35.0%
CATTAAAGTTCATGCTAGAG+GGG - chr4_1:10836360-10836379 Msa0535030:intron 35.0%
TAAAAACGAAAGGAGGAAGA+TGG - chr4_1:10836413-10836432 Msa0535030:intron 35.0%
AAAAACGAAAGGAGGAAGAT+GGG - chr4_1:10836414-10836433 Msa0535030:intron 35.0%
!! TCTTTAGAAGCTTTGAGATG+TGG - chr4_1:10836636-10836655 Msa0535030:intron 35.0%
!! AGCTTTGAGATGTGGATTAA+TGG - chr4_1:10836644-10836663 Msa0535030:intron 35.0%
GGAAAAACATGTTCATGGTT+AGG - chr4_1:10836695-10836714 Msa0535030:intron 35.0%
!! GTTCATGGTTAGGTTTTATG+TGG - chr4_1:10836705-10836724 Msa0535030:intron 35.0%
!! CAGTCTTATTGCACATAACA+TGG - chr4_1:10836844-10836863 Msa0535030:five_prime_UTR 35.0%
! GATTTTCCTCTTCCGTTACA+AGG - chr4_1:10834181-10834200 Msa0535030:three_prime_UTR 40.0%
! AGGGCCAATATTGATTGAGT+AGG - chr4_1:10834610-10834629 Msa0535030:CDS 40.0%
GTACACAGCAATGCAATTTC+AGG - chr4_1:10834782-10834801 Msa0535030:CDS 40.0%
! AGCAATGCAATTTCAGGTGA+AGG - chr4_1:10834788-10834807 Msa0535030:CDS 40.0%
GGAATGGTTTATAACTCCTC+CGG - chr4_1:10835148-10835167 Msa0535030:intron 40.0%
GAATGGTTTATAACTCCTCC+GGG - chr4_1:10835149-10835168 Msa0535030:intron 40.0%
AAAAAAAATCCAACTCCCGG+AGG + chr4_1:10835167-10835186 None:intergenic 40.0%
TCTCACTTCATGAATGGTTG+AGG - chr4_1:10835251-10835270 Msa0535030:intron 40.0%
! AAATTTGCTCACGTGGTTCA+TGG - chr4_1:10835329-10835348 Msa0535030:intron 40.0%
GGGACTTTATTCTACTCTCA+AGG - chr4_1:10835378-10835397 Msa0535030:CDS 40.0%
!! TGCAACTTGAGGCATTGATT+AGG + chr4_1:10835535-10835554 None:intergenic 40.0%
AATCAAAAGGGTTCGAGCAA+AGG + chr4_1:10835580-10835599 None:intergenic 40.0%
!! AATTGCCATTGGTTTCTGTC+AGG - chr4_1:10835959-10835978 Msa0535030:intron 40.0%
!! ATTGCCATTGGTTTCTGTCA+GGG - chr4_1:10835960-10835979 Msa0535030:intron 40.0%
GATAGCAACACAGCAGTATT+TGG - chr4_1:10836145-10836164 Msa0535030:intron 40.0%
AAAACGAAAGGAGGAAGATG+GGG - chr4_1:10836415-10836434 Msa0535030:intron 40.0%
TTGTAACGAATGTGTTCGAG+AGG - chr4_1:10836446-10836465 Msa0535030:intron 40.0%
AATGTGTTCGAGAGGATCAA+TGG - chr4_1:10836454-10836473 Msa0535030:intron 40.0%
! CATGAACATGTTTTTCCCTG+TGG + chr4_1:10836692-10836711 None:intergenic 40.0%
CACAGGGAAAAACATGTTCA+TGG - chr4_1:10836690-10836709 Msa0535030:intron 40.0%
! GAGAAACCTTGTAACGGAAG+AGG + chr4_1:10834190-10834209 None:intergenic 45.0%
TTTATAACTCCTCCGGGAGT+TGG - chr4_1:10835155-10835174 Msa0535030:intron 45.0%
CAAGGAGTTCAGTTTCTTGC+CGG - chr4_1:10835396-10835415 Msa0535030:CDS 45.0%
AAGGAGTTCAGTTTCTTGCC+GGG - chr4_1:10835397-10835416 Msa0535030:CDS 45.0%
! AAGCTATTGATGACCGAACC+CGG + chr4_1:10835418-10835437 None:intergenic 45.0%
ATTTCGCTATGCTACAGTGC+TGG + chr4_1:10835893-10835912 None:intergenic 45.0%
GGGTGTAAAAAGTGAAGACG+CGG - chr4_1:10835991-10836010 Msa0535030:exon 45.0%
GAGGTATGTTGTGTTCATCC+TGG - chr4_1:10836244-10836263 Msa0535030:intron 45.0%
TGTGTTCATCCTGGCATGAA+AGG - chr4_1:10836253-10836272 Msa0535030:intron 45.0%
CCTGGCATGAAAGGAATATC+CGG - chr4_1:10836262-10836281 Msa0535030:intron 45.0%
TTGAGAGCTGGGATTTCGTA+TGG - chr4_1:10836299-10836318 Msa0535030:intron 45.0%
TGAGAGCTGGGATTTCGTAT+GGG - chr4_1:10836300-10836319 Msa0535030:intron 45.0%
! AACATGTTTTTCCCTGTGGC+TGG + chr4_1:10836688-10836707 None:intergenic 45.0%
TGCACCTACCTATGAGCATT+TGG - chr4_1:10836815-10836834 Msa0535030:five_prime_UTR 45.0%
GCTTCCAAATGCTCATAGGT+AGG + chr4_1:10836822-10836841 None:intergenic 45.0%
! TGCTGCTTCCAAATGCTCAT+AGG + chr4_1:10836826-10836845 None:intergenic 45.0%
! CAGCTGATGCGAGCCTTTTT+CGG - chr4_1:10834875-10834894 Msa0535030:CDS 50.0%
GTTCAGTTTCTTGCCGGGTT+CGG - chr4_1:10835402-10835421 Msa0535030:CDS 50.0%
GTGTCCCTGACAGAAACCAA+TGG + chr4_1:10835967-10835986 None:intergenic 50.0%
TTTCTGTCAGGGACACGACA+GGG - chr4_1:10835971-10835990 Msa0535030:intron 50.0%
GCTACAGCATGCAATTGCTG+AGG - chr4_1:10836069-10836088 Msa0535030:five_prime_UTR 50.0%
! TTTTGCCCACATGCCTTGCA+TGG + chr4_1:10836218-10836237 None:intergenic 50.0%
GCAAGGCATGTGGGCAAAAA+CGG - chr4_1:10836219-10836238 Msa0535030:intron 50.0%
CCGGATATTCCTTTCATGCC+AGG + chr4_1:10836265-10836284 None:intergenic 50.0%
AGTTCATGCTAGAGGGGACA+TGG - chr4_1:10836366-10836385 Msa0535030:intron 50.0%
GTTCATGCTAGAGGGGACAT+GGG - chr4_1:10836367-10836386 Msa0535030:intron 50.0%
TTCATGCTAGAGGGGACATG+GGG - chr4_1:10836368-10836387 Msa0535030:intron 50.0%
CATGGGGTACGTTACATGCA+TGG - chr4_1:10836384-10836403 Msa0535030:intron 50.0%
! ATGTTTTTCCCTGTGGCTGG+AGG + chr4_1:10836685-10836704 None:intergenic 50.0%
GTTTCTGTCAGGGACACGAC+AGG - chr4_1:10835970-10835989 Msa0535030:intron 55.0%
! GGAGAGCATGTTGAGCAGTG+AGG - chr4_1:10836012-10836031 Msa0535030:five_prime_UTR 55.0%
ACATGCCTTGCATGGCTGCA+AGG + chr4_1:10836210-10836229 None:intergenic 55.0%
TTGCAGCCATGCAAGGCATG+TGG - chr4_1:10836209-10836228 Msa0535030:intron 55.0%
TGCAGCCATGCAAGGCATGT+GGG - chr4_1:10836210-10836229 Msa0535030:intron 55.0%
CATGTGGGCAAAAACGGACG+AGG - chr4_1:10836225-10836244 Msa0535030:intron 55.0%
ACGAAAGGAGGAAGATGGGG+AGG - chr4_1:10836418-10836437 Msa0535030:intron 55.0%
TCGAGAGGATCAATGGCGAG+TGG - chr4_1:10836461-10836480 Msa0535030:intron 55.0%
! ATGAAGTGCCTCCAGCCACA+GGG - chr4_1:10836674-10836693 Msa0535030:intron 55.0%
! GATGAAGTGCCTCCAGCCAC+AGG - chr4_1:10836673-10836692 Msa0535030:intron 60.0%
GGCGACCTTGCAGCCATGCA+AGG - chr4_1:10836202-10836221 Msa0535030:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 10834048 10836891 10834048 ID=Msa0535030;Name=Msa0535030
chr4_1 mRNA 10834048 10836891 10834048 ID=Msa0535030-mRNA-1;Parent=Msa0535030;Name=Msa0535030-mRNA-1;_AED=0.00;_eAED=0.00;_QI=239|1|1|1|0.66|0.5|4|366|255
chr4_1 exon 10834048 10834958 10834048 ID=Msa0535030-mRNA-1:exon:3500;Parent=Msa0535030-mRNA-1
chr4_1 exon 10835371 10835560 10835371 ID=Msa0535030-mRNA-1:exon:3499;Parent=Msa0535030-mRNA-1
chr4_1 exon 10835977 10836093 10835977 ID=Msa0535030-mRNA-1:exon:3498;Parent=Msa0535030-mRNA-1
chr4_1 exon 10836737 10836891 10836737 ID=Msa0535030-mRNA-1:exon:3497;Parent=Msa0535030-mRNA-1
chr4_1 five_prime_UTR 10836737 10836891 10836737 ID=Msa0535030-mRNA-1:five_prime_utr;Parent=Msa0535030-mRNA-1
chr4_1 five_prime_UTR 10836010 10836093 10836010 ID=Msa0535030-mRNA-1:five_prime_utr;Parent=Msa0535030-mRNA-1
chr4_1 CDS 10835977 10836009 10835977 ID=Msa0535030-mRNA-1:cds;Parent=Msa0535030-mRNA-1
chr4_1 CDS 10835371 10835560 10835371 ID=Msa0535030-mRNA-1:cds;Parent=Msa0535030-mRNA-1
chr4_1 CDS 10834414 10834958 10834414 ID=Msa0535030-mRNA-1:cds;Parent=Msa0535030-mRNA-1
chr4_1 three_prime_UTR 10834048 10834413 10834048 ID=Msa0535030-mRNA-1:three_prime_utr;Parent=Msa0535030-mRNA-1
Gene Sequence

>Msa0535030

ATGGCGCTTTATGCAACTGCGTTATCGTTCAACGGACTTTATTCTACTCTCAAGGAGTTCAGTTTCTTGCCGGGTTCGGTCATCAATAGCTTTCACAAGCGACATGATGTTTGTCTGCAATCCTTTAATCCAAATAAGTTAGCTTTTGGCAAAAGTTTTGAAAGAGGAGACGAACTGTGTTTGTTGCCTAATCAATGCCTCAAGTTGCAAATGAGAAGATTCAGGACACGACAGGGTGTAAAAAGTGAAGACGCGGAGAGCATGTTGAGCAGTGAGGACATTGCATTAGATGAAAACACTTTAGAGGAAGAGCTACAGCATGCAATTGCTGAGGAGAATTATGCTAAAGCAGCAGAAATAAGGGATACACTAAAAAACCTACAAAAAGATAGCAACACAGCAGTATTTGGAGCAAACAGCAAGTTTTATGATTCATTCAGGAATGGCGACCTTGCAGCCATGCAAGGCATGTGGGCAAAAACGGACGAGGTATGTTGTGTTCATCCTGGCATGAAAGGAATATCCGGCTATGATGATGTTATTGAGAGCTGGGATTTCGTATGGGCTAACTATGAATTTCCATTACAAATCAAACTAGAAGACATTAAAGTTCATGCTAGAGGGGACATGGGGTACGTTACATGCATGGAATTTGTAAAAACGAAAGGAGGAAGATGGGGAGGACAATTTGTAACGAATGTGTTCGAGAGGATCAATGGCGAGTGGTTTATTTGTAATCATCATGCTTCACCAGTAGATATGAATTGA

Protein sequence

>Msa0535030

MALYATALSFNGLYSTLKEFSFLPGSVINSFHKRHDVCLQSFNPNKLAFGKSFERGDELCLLPNQCLKLQMRRFRTRQGVKSEDAESMLSSEDIALDENTLEEELQHAIAEENYAKAAEIRDTLKNLQKDSNTAVFGANSKFYDSFRNGDLAAMQGMWAKTDEVCCVHPGMKGISGYDDVIESWDFVWANYEFPLQIKLEDIKVHARGDMGYVTCMEFVKTKGGRWGGQFVTNVFERINGEWFICNHHASPVDMN*