AlfalfaGEDB | Msa0371600

M. sativa cultivar zhongmu-4 / Msa0371600

KEGG: -
GO: -
PFAM: PF00650.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371600	KEH25778.1	89.714	175	17	1	131	304	131	305	2.02e-102	330

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371600	sp\|F4JYJ3\|SFH11_ARATH	60.194	103	41	0	195	297	86	188	2.85e-35	141

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371600	A0A072U9M4	89.714	175	17	1	131	304	131	305	9.67e-103	330

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0371600	Msa0654310	0.804806	1.809946e-49	-8.615850e-47
Msa0371600	Msa0703780	0.806761	7.031758e-50	-8.615850e-47
Msa0371600	Msa0832150	0.803786	2.951447e-49	-8.615850e-47
Msa0371600	Msa1331240	0.888886	3.966475e-73	-8.615850e-47
Msa0371600	Msa1379590	0.802087	6.626236e-49	-8.615850e-47
Msa0371600	Msa1420820	0.881637	2.034024e-70	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371600	MtrunA17_Chr5g0399151	87.379	103	13	0	195	297	151	253	5.46e-56	198
Msa0371600	MtrunA17_Chr1g0150971	67.901	162	22	2	562	723	381	512	6.28e-53	197
Msa0371600	MtrunA17_Chr6g0463171	92.308	65	5	0	131	195	15	79	1.75e-36	132
Msa0371600	MtrunA17_Chr3g0144291	89.231	65	7	0	131	195	154	218	4.65e-35	133
Msa0371600	MtrunA17_Chr1g0150991	52.469	162	21	3	562	723	197	302	4.18e-34	139
Msa0371600	MtrunA17_Chr3g0126111	73.913	92	17	2	480	564	439	530	1.42e-32	134
Msa0371600	MtrunA17_Chr3g0144911	56.566	99	43	0	195	293	146	244	9.85e-31	125
Msa0371600	MtrunA17_Chr1g0155521	58.586	99	41	0	195	293	148	246	1.88e-29	124
Msa0371600	MtrunA17_Chr4g0035391	55.556	99	44	0	195	293	143	241	3.33e-29	123
Msa0371600	MtrunA17_Chr3g0141821	55.556	99	44	0	195	293	129	227	3.35e-29	123

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371600	AT5G47510.3	60.194	103	41	0	195	297	30	132	1.11e-36	140
Msa0371600	AT5G47510.2	60.194	103	41	0	195	297	87	189	1.25e-36	141
Msa0371600	AT5G47510.4	60.194	103	41	0	195	297	87	189	2.81e-36	141
Msa0371600	AT5G47510.1	60.194	103	41	0	195	297	86	188	2.89e-36	141
Msa0371600	AT4G33210.1	52.500	160	46	2	562	721	390	519	2.11e-33	138
Msa0371600	AT4G34580.2	45.522	134	63	2	195	322	124	253	1.56e-29	124
Msa0371600	AT4G34580.1	45.522	134	63	2	195	322	124	253	1.56e-29	124
Msa0371600	AT1G19650.3	54.545	99	45	0	195	293	140	238	1.84e-29	122
Msa0371600	AT1G76450.1	75.385	65	16	0	131	195	160	224	3.74e-29	117
Msa0371600	AT1G19650.2	54.545	99	45	0	195	293	68	166	4.39e-29	122

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Find 139 sgRNAs with CRISPR-Local

Find 540 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGCAGATGAGAATG+TGG	0.652461	3_1:-69824221	Msa0371600:CDS
AAAATCACCTGATAGTCTGA+AGG	0.567444	3_1:+69823860	None:intergenic
AAACATCTATATTCAGCTTT+TGG	0.193494	3_1:-69826072	Msa0371600:CDS
AAATCACCTGATAGTCTGAA+GGG	0.590641	3_1:+69823861	None:intergenic
AAATTCATCCCACTATTAAA+GGG	0.478532	3_1:+69825274	None:intergenic
AACAGACTGTATACAGCGAC+AGG	0.533638	3_1:-69826027	Msa0371600:CDS
AAGGTCTGAAGTTGAACCAA+TGG	0.569408	3_1:-69830311	Msa0371600:exon
AATAGCTCATAGCTATATGT+TGG	0.564569	3_1:-69822312	Msa0371600:CDS
AATATGACAGGTTAGTGGGT+TGG	0.579569	3_1:-69826419	Msa0371600:intron
AATCTAATATTCTTCATACG+TGG	0.682538	3_1:+69822148	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTATGTATTTACTGGGAA+AGG	-	chr3_1:69821903-69821922	Msa0371600:CDS	30.0%
AATGACTTGAAATGCAAGAA+AGG	+	chr3_1:69822076-69822095	None:intergenic	30.0%
ATTTGCAAAATTCACATGCA+AGG	-	chr3_1:69822146-69822165	Msa0371600:CDS	30.0%
TTTGCAAAATTCACATGCAA+GGG	-	chr3_1:69822147-69822166	Msa0371600:CDS	30.0%
CTGATTCAAACTACTTGAAA+GGG	+	chr3_1:69822229-69822248	None:intergenic	30.0%
TTTCACTTTACGTTATTTGC+CGG	-	chr3_1:69822588-69822607	Msa0371600:CDS	30.0%
ATGAGTTGTAATGTGATGAA+TGG	+	chr3_1:69822825-69822844	None:intergenic	30.0%
ATCTTCTTCGATTTCAATTC+TGG	+	chr3_1:69822988-69823007	None:intergenic	30.0%
TGATGTTTGTGATGTATTTG+TGG	+	chr3_1:69823258-69823277	None:intergenic	30.0%
AAAAGAGGGAAAAATAACTC+CGG	-	chr3_1:69823685-69823704	Msa0371600:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	69821866	69830389	69821866	ID=Msa0371600;Name=Msa0371600
chr3_1	mRNA	69821866	69830389	69821866	ID=Msa0371600-mRNA-1;Parent=Msa0371600;Name=Msa0371600-mRNA-1;_AED=0.47;_eAED=0.52;_QI=75\|0.06\|0.17\|0.70\|1\|1\|17\|0\|736
chr3_1	exon	69821866	69821971	69821866	ID=Msa0371600-mRNA-1:exon:15016;Parent=Msa0371600-mRNA-1
chr3_1	exon	69822046	69822221	69822046	ID=Msa0371600-mRNA-1:exon:15015;Parent=Msa0371600-mRNA-1
chr3_1	exon	69822310	69822376	69822310	ID=Msa0371600-mRNA-1:exon:15014;Parent=Msa0371600-mRNA-1
chr3_1	exon	69822473	69822650	69822473	ID=Msa0371600-mRNA-1:exon:15013;Parent=Msa0371600-mRNA-1
chr3_1	exon	69822829	69822961	69822829	ID=Msa0371600-mRNA-1:exon:15012;Parent=Msa0371600-mRNA-1
chr3_1	exon	69823066	69823173	69823066	ID=Msa0371600-mRNA-1:exon:15011;Parent=Msa0371600-mRNA-1
chr3_1	exon	69823302	69823395	69823302	ID=Msa0371600-mRNA-1:exon:15010;Parent=Msa0371600-mRNA-1
chr3_1	exon	69823571	69823611	69823571	ID=Msa0371600-mRNA-1:exon:15009;Parent=Msa0371600-mRNA-1
chr3_1	exon	69823868	69824017	69823868	ID=Msa0371600-mRNA-1:exon:15008;Parent=Msa0371600-mRNA-1
chr3_1	exon	69824102	69824266	69824102	ID=Msa0371600-mRNA-1:exon:15007;Parent=Msa0371600-mRNA-1
chr3_1	exon	69825264	69825375	69825264	ID=Msa0371600-mRNA-1:exon:15006;Parent=Msa0371600-mRNA-1
chr3_1	exon	69825565	69825593	69825565	ID=Msa0371600-mRNA-1:exon:15005;Parent=Msa0371600-mRNA-1
chr3_1	exon	69825681	69825947	69825681	ID=Msa0371600-mRNA-1:exon:15004;Parent=Msa0371600-mRNA-1
chr3_1	exon	69826023	69826141	69826023	ID=Msa0371600-mRNA-1:exon:15003;Parent=Msa0371600-mRNA-1
chr3_1	exon	69826356	69826431	69826356	ID=Msa0371600-mRNA-1:exon:15002;Parent=Msa0371600-mRNA-1
chr3_1	exon	69828872	69829171	69828872	ID=Msa0371600-mRNA-1:exon:15001;Parent=Msa0371600-mRNA-1
chr3_1	exon	69830225	69830389	69830225	ID=Msa0371600-mRNA-1:exon:15000;Parent=Msa0371600-mRNA-1
chr3_1	five_prime_UTR	69830315	69830389	69830315	ID=Msa0371600-mRNA-1:five_prime_utr;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69830225	69830314	69830225	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69828872	69829171	69828872	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69826356	69826431	69826356	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69826023	69826141	69826023	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69825681	69825947	69825681	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69825565	69825593	69825565	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69825264	69825375	69825264	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69824102	69824266	69824102	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69823868	69824017	69823868	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69823571	69823611	69823571	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69823302	69823395	69823302	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69823066	69823173	69823066	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69822829	69822961	69822829	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69822473	69822650	69822473	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69822310	69822376	69822310	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69822046	69822221	69822046	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1
chr3_1	CDS	69821866	69821971	69821866	ID=Msa0371600-mRNA-1:cds;Parent=Msa0371600-mRNA-1

Gene Sequence

>Msa0371600

ATGGAAATTACACCTGCTAGAAAGACACAGAAGGCTGACCGAGAAGAGTTAAGGAGGGATCGACTCAATGAACAATTTTTAGAGCTGGGTCACAGAATTTCTGTACGATCACAGAAAGAGGAGGTTGAGAAGAGAAAAAGAGGTGTCGAAGGAAAATTGATCAGAGAACACGAAGAAGAAAAGGATCAAGCTCAACAAGAAGCAGATTCAACAAGATCGAATCAGTTACACCACAAACCACCACCAAATCGTCGCAAACCACCACAAATACATCACAAACATCACCAATTCATCACTGATTTCAAAATCCACCACCTCAAAACCGAAATTCAACAAAATCGAATTTCCCAAACCCTAACAGCCACAATCCGAACCTCACAACCACAACAGGTTAGTGGGTTGGACAGAAACTGGAAAAAACCACCTGGTGTGGTTGCTAAACTCATAGATTGTAAATCATATAAAGGATTTTATTTCATTGAGTATACGCTGCAAAGTCCTGGTGAGGGTCGCAAACATCTATATTCAGCTTTTGGGATGTTAATAGATGGTTGGTATAACAGACTGTATACAGCGACAGGACAGGAGTTCAAATTTCCAGAATACACAGAAGTGAAAAAATGCTATCCTCATGGATTCTATGGGCTTGATAAATGTGGCAGACCTGTGTATATCGGGAGAAGTGGGATGATAGATGTTAACAAACTGTGGCAAATAACCACACAAGAAAGGCTTATCAAGCATCATGTGTCAGAACAAGAGAAAACACTAAGAGTAAGATACCCTGCATGTTCATTAGCAGCCAAAAGACACATAGCATCCACCACAAGTATCTTGGATGGCAATGGAGTAGGAATGTCTAATTTCTCAGAGCCTGCAAGTGTAGCATTTGATAATGAATCATCTCTTTTTATGTTTCCTTTTGTGATACTGATGCTGATTTTCCTTGATGCTAATGTTCCCTTTAATAGTGGGATGAATTTGCAGAATGAGGAATGTGTGGATGCAGCAGATGGAAAACCAGCAGATGAGAATGTGGATTCTTACCTGTCTACTGAAAATGCTGATGCTGATCTTAGAACTTTGCCTTTCAGCAATCTAAAACGAATTTCAGGAACAGAGAGTAGAAATCAGAATAAAAGTAAAATATTCATGGATAGTTGGTTGGCTTATTACAAAGCTTTAGACGGTGGAGATCGTGGCATTGATGGTGATTTCCCTGTTGTGTTTTCTTTAGAAAAACCTAAAGTTAAACTGCTTCCATTTAAGGGTCCAAGTGGAGAAGAGGAAAACCCTTCAGACTATCAGATTGTTCCAGATTTTAGGGTCCGTATAATACCTGTTTTAGGTGACTTCATAGATGATTGGGTGAAAATTGGTTTATCTTCCAAAGTCAAGGTTCTAAAAGAACATGAATGCAATGATTTCAAGCTAAAGATTACATATGCTGCAACAGCATCTTTTCTCAGTAAATTGTATAGTGATTACATTGATCATCTCAAAATATCCGGTGCAGTTGCGAAACCGATGCATTCTCAGTTTCAATGCTTCGTTAACTACATCTTGGGACAAAATCCAATGAAAATGAGTTATTTAGTGGGATATGATGATAAGTTTCCAGTCCAAGTTCATCATAGAAGTGCGTCGATCCCTTGGGATAAACGGTACTACAATTGTGATGATGCTGCAACTTCATGCCCTCAACTGGTGAAGCTGGACATGCATAACTGTTCTTGTGTTAGCGATGAAACCCTGCGTGAAATAGCGCATCATTGCCCTAATCTTGGTTTTCTTGATGCATCATACTGCCCAAGCATATCTTTGGAGTTGTGCTTCAAATTGTACACTCGCTTTTTGCATATGTTTCATAGCTGCGAGGGCATCACTTCTGCATCAATGGCTGCAATAGCTCATAGCTATATGTTGGAGGTTTTGGAACTCTGCAGTTGCAGTCTATTGACTTCGGTGTCGTTGGATCTTCCACGTATGAAGAATATTAGATTGGCGTACTGTCGCAAGTATGTTTCTGCTTCATTTTTTCTCTCCCAAGAAAAGCACTATAATTCTATTATTGATGTGTCTCTCGCTATTGCTTTTCACTTTCTACTAGCAGATTTGAACTTGAGTGCTATATCACTTTCTTCTATACAAGTGTCTAACTGCTCCACCGGATCAATATCACTTCAAATTCACTTCAAGTATGTCTTATAA

Protein sequence

>Msa0371600

MEITPARKTQKADREELRRDRLNEQFLELGHRISVRSQKEEVEKRKRGVEGKLIREHEEEKDQAQQEADSTRSNQLHHKPPPNRRKPPQIHHKHHQFITDFKIHHLKTEIQQNRISQTLTATIRTSQPQQVSGLDRNWKKPPGVVAKLIDCKSYKGFYFIEYTLQSPGEGRKHLYSAFGMLIDGWYNRLYTATGQEFKFPEYTEVKKCYPHGFYGLDKCGRPVYIGRSGMIDVNKLWQITTQERLIKHHVSEQEKTLRVRYPACSLAAKRHIASTTSILDGNGVGMSNFSEPASVAFDNESSLFMFPFVILMLIFLDANVPFNSGMNLQNEECVDAADGKPADENVDSYLSTENADADLRTLPFSNLKRISGTESRNQNKSKIFMDSWLAYYKALDGGDRGIDGDFPVVFSLEKPKVKLLPFKGPSGEEENPSDYQIVPDFRVRIIPVLGDFIDDWVKIGLSSKVKVLKEHECNDFKLKITYAATASFLSKLYSDYIDHLKISGAVAKPMHSQFQCFVNYILGQNPMKMSYLVGYDDKFPVQVHHRSASIPWDKRYYNCDDAATSCPQLVKLDMHNCSCVSDETLREIAHHCPNLGFLDASYCPSISLELCFKLYTRFLHMFHSCEGITSASMAAIAHSYMLEVLELCSCSLLTSVSLDLPRMKNIRLAYCRKYVSASFFLSQEKHYNSIIDVSLAIAFHFLLADLNLSAISLSSIQVSNCSTGSISLQIHFKYVL*