AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1420820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420820 MtrunA17_Chr5g0399151 87.379 103 13 0 73 175 151 253 4.67e-57 199
Msa1420820 MtrunA17_Chr1g0150971 67.901 162 22 2 440 601 381 512 2.56e-53 196
Msa1420820 MtrunA17_Chr1g0150991 51.852 162 22 3 440 601 197 302 2.74e-33 135
Msa1420820 MtrunA17_Chr3g0126111 72.826 92 18 2 358 442 439 530 1.36e-32 132
Msa1420820 MtrunA17_Chr3g0144911 56.566 99 43 0 73 171 146 244 5.19e-31 125
Msa1420820 MtrunA17_Chr1g0155521 58.586 99 41 0 73 171 148 246 1.26e-29 124
Msa1420820 MtrunA17_Chr4g0035391 55.556 99 44 0 73 171 143 241 1.75e-29 123
Msa1420820 MtrunA17_Chr3g0141821 55.556 99 44 0 73 171 129 227 1.93e-29 123
Msa1420820 MtrunA17_Chr5g0404711 53.000 100 47 0 72 171 111 210 1.49e-27 116
Msa1420820 MtrunA17_Chr8g0372651 52.941 85 40 0 87 171 129 213 5.97e-25 109
Msa1420820 MtrunA17_Chr3g0144891 53.933 89 41 0 83 171 143 231 2.74e-24 107
Msa1420820 MtrunA17_Chr4g0035361 55.172 87 39 0 85 171 49 135 4.02e-24 105
Msa1420820 MtrunA17_Chr7g0236461 49.495 99 50 0 73 171 136 234 5.46e-24 106
Msa1420820 MtrunA17_Chr4g0035381 46.392 97 52 0 73 169 120 216 5.46e-23 101
Msa1420820 MtrunA17_Chr3g0080051 54.651 86 39 0 87 172 152 237 2.15e-22 101
Msa1420820 MtrunA17_Chr5g0434401 88.462 52 6 0 277 328 253 304 3.48e-22 100
Msa1420820 MtrunA17_Chr8g0369291 53.488 86 40 0 87 172 140 225 3.85e-22 100
Msa1420820 MtrunA17_Chr6g0463171 67.213 61 20 0 13 73 19 79 1.64e-21 89.4
Msa1420820 MtrunA17_Chr2g0282401 88.000 50 6 0 210 259 450 499 8.59e-20 94.0
Msa1420820 MtrunA17_Chr3g0144291 63.934 61 22 0 13 73 158 218 2.45e-19 87.8
Msa1420820 MtrunA17_Chr4g0072811 40.449 89 42 2 358 437 21 107 1.07e-14 73.2
Msa1420820 MtrunA17_Chr3g0120661 41.379 87 44 1 358 437 447 533 6.95e-14 74.7
Msa1420820 MtrunA17_Chr2g0291461 42.529 87 43 1 358 437 445 531 7.24e-14 74.7
Msa1420820 MtrunA17_Chr4g0038511 93.939 33 2 0 1 33 1 33 9.96e-13 68.9
Msa1420820 MtrunA17_Chr6g0463161 100.000 27 0 0 329 355 12 38 1.64e-12 62.4
Msa1420820 MtrunA17_Chr3g0119371 46.753 77 35 2 358 428 358 434 3.23e-11 66.2
Msa1420820 MtrunA17_Chr8g0372031 43.038 79 38 3 358 429 381 459 9.24e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420820 AT5G47510.3 60.194 103 41 0 73 175 30 132 4.27e-37 141
Msa1420820 AT5G47510.2 60.194 103 41 0 73 175 87 189 5.31e-37 141
Msa1420820 AT5G47510.4 60.194 103 41 0 73 175 87 189 1.07e-36 141
Msa1420820 AT5G47510.1 60.194 103 41 0 73 175 86 188 1.19e-36 141
Msa1420820 AT4G33210.1 52.500 160 46 2 440 599 390 519 1.95e-33 137
Msa1420820 AT4G34580.2 45.522 134 63 2 73 200 124 253 8.69e-30 124
Msa1420820 AT4G34580.1 45.522 134 63 2 73 200 124 253 8.69e-30 124
Msa1420820 AT1G19650.3 54.545 99 45 0 73 171 140 238 1.15e-29 122
Msa1420820 AT1G19650.2 54.545 99 45 0 73 171 68 166 2.69e-29 122
Msa1420820 AT1G19650.1 54.545 99 45 0 73 171 140 238 3.40e-29 123
Msa1420820 AT4G39180.3 54.000 100 46 0 73 172 132 231 3.58e-29 122
Msa1420820 AT4G39180.2 54.000 100 46 0 73 172 132 231 3.58e-29 122
Msa1420820 AT4G39180.1 54.000 100 46 0 73 172 132 231 3.85e-29 122
Msa1420820 AT2G21540.3 53.535 99 46 0 73 171 131 229 7.73e-28 118
Msa1420820 AT2G21540.5 53.535 99 46 0 73 171 131 229 7.73e-28 118
Msa1420820 AT4G36490.1 53.535 99 46 0 73 171 114 212 8.53e-28 118
Msa1420820 AT2G21540.6 53.535 99 46 0 73 171 131 229 8.67e-28 118
Msa1420820 AT2G21540.2 53.535 99 46 0 73 171 131 229 8.67e-28 118
Msa1420820 AT2G21540.1 53.535 99 46 0 73 171 131 229 8.67e-28 118
Msa1420820 AT2G21540.4 53.535 99 46 0 73 171 131 229 8.67e-28 118
Msa1420820 AT4G39170.1 46.825 126 62 3 47 171 121 242 1.02e-27 118
Msa1420820 AT4G39170.2 46.825 126 62 3 47 171 121 242 1.05e-27 118
Msa1420820 AT1G75370.1 60.674 89 35 0 83 171 159 247 1.15e-27 118
Msa1420820 AT1G75370.2 60.674 89 35 0 83 171 159 247 1.38e-27 118
Msa1420820 AT2G18180.4 52.525 99 47 0 73 171 46 144 1.91e-27 116
Msa1420820 AT2G18180.5 52.525 99 47 0 73 171 19 117 1.98e-27 115
Msa1420820 AT2G18180.3 52.525 99 47 0 73 171 46 144 2.03e-27 116
Msa1420820 AT2G18180.1 52.525 99 47 0 73 171 117 215 3.17e-27 116
Msa1420820 AT2G18180.2 52.525 99 47 0 73 171 117 215 3.19e-27 116
Msa1420820 AT2G16380.3 51.515 99 48 0 73 171 19 117 5.70e-27 114
Msa1420820 AT2G16380.2 51.515 99 48 0 73 171 124 222 7.67e-27 115
Msa1420820 AT2G16380.1 51.515 99 48 0 73 171 124 222 7.67e-27 115
Msa1420820 AT5G56160.2 42.424 132 74 1 73 202 130 261 3.18e-26 113
Msa1420820 AT5G56160.1 42.424 132 74 1 73 202 130 261 4.86e-26 113
Msa1420820 AT5G56160.3 42.424 132 74 1 73 202 130 261 4.86e-26 113
Msa1420820 AT2G21520.2 45.455 110 59 1 63 171 139 248 1.11e-25 112
Msa1420820 AT2G21520.3 45.455 110 59 1 63 171 139 248 1.11e-25 112
Msa1420820 AT2G21520.1 45.455 110 59 1 63 171 135 244 1.17e-25 112
Msa1420820 AT3G24840.7 51.000 100 49 0 73 172 139 238 2.18e-25 111
Msa1420820 AT3G24840.3 51.000 100 49 0 73 172 139 238 2.18e-25 111
Msa1420820 AT3G24840.5 51.000 100 49 0 73 172 139 238 2.18e-25 111
Msa1420820 AT3G24840.1 51.000 100 49 0 73 172 139 238 2.27e-25 111
Msa1420820 AT3G24840.6 51.000 100 49 0 73 172 139 238 2.27e-25 111
Msa1420820 AT3G24840.4 51.000 100 49 0 73 172 139 238 2.27e-25 111
Msa1420820 AT3G24840.2 51.000 100 49 0 73 172 139 238 2.27e-25 111
Msa1420820 AT1G55690.3 40.769 130 75 1 87 214 151 280 4.84e-22 100
Msa1420820 AT1G55690.2 40.769 130 75 1 87 214 151 280 5.20e-22 100
Msa1420820 AT1G55690.4 40.769 130 75 1 87 214 151 280 5.20e-22 100
Msa1420820 AT1G55690.1 40.769 130 75 1 87 214 151 280 5.20e-22 100
Msa1420820 AT1G55690.5 40.769 130 75 1 87 214 151 280 5.20e-22 100
Msa1420820 AT5G37530.1 76.000 50 12 0 279 328 253 302 9.56e-18 86.7
Msa1420820 AT5G37530.2 76.000 50 12 0 279 328 252 301 9.85e-18 86.7
Msa1420820 AT1G76450.1 82.500 40 7 0 34 73 185 224 5.81e-17 81.3
Msa1420820 AT1G65610.1 41.111 90 46 1 358 440 446 535 2.64e-14 76.6
Msa1420820 AT5G49720.1 43.678 87 42 1 358 437 442 528 4.40e-14 75.9
Msa1420820 AT1G19940.2 41.667 96 37 4 358 444 362 447 9.75e-11 65.1
Msa1420820 AT1G19940.1 41.667 96 37 4 358 444 362 447 9.75e-11 65.1

Find 115 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTAAACTGCTTCCATTTA+AGG 0.088576 tig0024855:+42233 Msa1420820:CDS
TGCTATCCTCATGGATTCTA+TGG 0.142346 tig0024855:+40250 Msa1420820:CDS
CAAATTCATCCCACTATTAA+AGG 0.172018 tig0024855:-40866 None:intergenic
TCTCCACTTGGACCCTTAAA+TGG 0.191266 tig0024855:-42246 None:intergenic
AAACATCTATATTCAGCTTT+TGG 0.193494 tig0024855:+40067 Msa1420820:CDS
ATAGATGATTGGGTGAAAAT+TGG 0.260892 tig0024855:+42771 Msa1420820:CDS
TTTGGAACTTATGTATTTAC+TGG 0.275059 tig0024855:+39512 Msa1420820:five_prime_UTR
AATGGAAGCAGTTTAACTTT+AGG 0.275163 tig0024855:-42228 None:intergenic
GCTAATGTTCCCTTTAATAG+TGG 0.275371 tig0024855:+40856 Msa1420820:CDS
GTTAAACTGCTTCCATTTAA+GGG 0.303011 tig0024855:+42234 Msa1420820:CDS
GGTGGATGCTATGTGTCTTT+TGG 0.323985 tig0024855:-40431 None:intergenic
AGCAATCTAAAACGAATTTC+AGG 0.326894 tig0024855:+41994 Msa1420820:CDS
TCCATGAAGATTTACCTTGC+AGG 0.333113 tig0024855:-40589 None:intergenic
GAGAGTAGAAATCAGAATAA+AGG 0.353001 tig0024855:+42021 Msa1420820:CDS
GCGCATCATTTCCCTAATCT+TGG 0.360787 tig0024855:+43586 Msa1420820:CDS
GCATCAAGAAAACCAAGATT+AGG 0.372424 tig0024855:-43598 None:intergenic
GGAAAACCCTTCAGACTATC+AGG 0.373502 tig0024855:+42272 Msa1420820:CDS
ACCCTAAAACAGGTATTATA+CGG 0.382346 tig0024855:-42569 None:intergenic
GATCCTTCCTTAACTCTTCT+CGG 0.392642 tig0024855:-39594 None:intergenic
ATACTGCCCAAGCATATCTT+TGG 0.400258 tig0024855:+43624 Msa1420820:CDS
TGTGGCAGACCTGTGTATAT+CGG 0.403396 tig0024855:+40283 Msa1420820:CDS
GCCTTCTGTGTCTTTCTAGC+AGG 0.403457 tig0024855:-39568 None:intergenic
AATGAAAATGAGTTATTTAG+TGG 0.404423 tig0024855:+43223 Msa1420820:CDS
CATCAAGAAAACCAAGATTA+GGG 0.410489 tig0024855:-43597 None:intergenic
CGTCGATCCCTTGGGATAAA+CGG 0.412629 tig0024855:+43288 Msa1420820:CDS
AGCATCCACCACAAGTATCT+TGG 0.414536 tig0024855:+40444 Msa1420820:CDS
GTTTCAGGTTAACTACATCT+TGG 0.423871 tig0024855:+43190 Msa1420820:intron
TTTCAGGTTAACTACATCTT+GGG 0.429290 tig0024855:+43191 Msa1420820:intron
TGCAACTTCATGCCCTCAAC+TGG 0.430503 tig0024855:+43507 Msa1420820:CDS
GAATAAAGGTAAAATATTCA+TGG 0.436549 tig0024855:+42035 Msa1420820:CDS
CTAGCAGGTGTAATTTCCAT+TGG 0.438402 tig0024855:-39553 None:intergenic
AGGCTGACCGAGAAGAGTTA+AGG 0.447590 tig0024855:+39587 Msa1420820:CDS
ATGCCCTCAACTGGTGAAGC+TGG 0.450963 tig0024855:+43516 Msa1420820:CDS
CGGTACTACAATTGTGATGA+TGG 0.451797 tig0024855:+43308 Msa1420820:CDS
ATTATACGGACCCTAAAATC+TGG 0.454521 tig0024855:-42555 None:intergenic
GGGCATCACTTCTGCATCAA+TGG 0.456897 tig0024855:+43795 Msa1420820:CDS
GCAGTGACTTCATAGATGAT+TGG 0.458690 tig0024855:+42760 Msa1420820:intron
ATAGAAGTGCGTCGATCCCT+TGG 0.463260 tig0024855:+43279 Msa1420820:CDS
TATTATACGAACCCTAAAAC+AGG 0.470476 tig0024855:-42579 None:intergenic
AAATTCATCCCACTATTAAA+GGG 0.478532 tig0024855:-40865 None:intergenic
TCTATTGACTTCGGTGTCGT+TGG 0.480572 tig0024855:+43958 Msa1420820:CDS
ATTGATCATCTCAAAATATC+CGG 0.485852 tig0024855:+43030 Msa1420820:CDS
CACAACTCCAAAGATATGCT+TGG 0.485915 tig0024855:-43631 None:intergenic
ACGTATGAAGAATATTAGAT+TGG 0.488147 tig0024855:+43988 Msa1420820:CDS
AACAGACTGTATACAGCGAC+AGG 0.490835 tig0024855:+40112 Msa1420820:CDS
GTGGCAGACCTGTGTATATC+GGG 0.493831 tig0024855:+40284 Msa1420820:CDS
CTTGATAAGCCTTTCTTGTG+TGG 0.496556 tig0024855:-40347 None:intergenic
GAATCCACATTCTCATCTGT+TGG 0.497389 tig0024855:-41922 None:intergenic
ATCAGCATCAGTATCACAAA+AGG 0.500121 tig0024855:-40823 None:intergenic
ACTTATGTATTTACTGGGAA+AGG 0.500314 tig0024855:+39518 Msa1420820:five_prime_UTR
CTTCTATGATGAACTTGGAC+TGG 0.507668 tig0024855:-43263 None:intergenic
CAGTGACTTCATAGATGATT+GGG 0.508975 tig0024855:+42761 Msa1420820:intron
GGCAAATAACCACACAAGAA+AGG 0.513788 tig0024855:+40338 Msa1420820:CDS
CATCGGTTTCGCAGTTGCAC+CGG 0.515077 tig0024855:-43049 None:intergenic
ACGCACTTCTATGATGAACT+TGG 0.517227 tig0024855:-43268 None:intergenic
ACAACTCCAAAGATATGCTT+GGG 0.519266 tig0024855:-43630 None:intergenic
CTAATGTTCCCTTTAATAGT+GGG 0.522819 tig0024855:+40857 Msa1420820:CDS
ATGTCCAGCTTCACCAGTTG+AGG 0.523654 tig0024855:-43520 None:intergenic
TAGAAGTGCGTCGATCCCTT+GGG 0.523700 tig0024855:+43280 Msa1420820:CDS
GAGTATACGCTGCAAAGTCC+TGG 0.525909 tig0024855:+40034 Msa1420820:CDS
GGTGGAGATCGTGGCATTGA+TGG 0.528712 tig0024855:+42174 Msa1420820:CDS
CAAGTGTCTAACTGCTCCAC+CGG 0.534792 tig0024855:+44228 Msa1420820:CDS
TTGGGATGTTAACAGATGGT+TGG 0.535275 tig0024855:+40086 Msa1420820:CDS
TGGTTTATCTTCCAAAGTCA+AGG 0.539535 tig0024855:+42791 Msa1420820:CDS
TTGGCTGCTAATGAACATGC+AGG 0.545058 tig0024855:-40412 None:intergenic
AGCTCATAGCTATATGTTGG+AGG 0.545216 tig0024855:+43825 Msa1420820:CDS
CCTGTGTATATCGGGAGAAG+TGG 0.546255 tig0024855:+40292 Msa1420820:CDS
TAAAGGGAACATTAGCATCA+AGG 0.547697 tig0024855:-40849 None:intergenic
CAATTGCAGTCTATTGACTT+CGG 0.553989 tig0024855:+43949 Msa1420820:CDS
TTGTAGTACCGTTTATCCCA+AGG 0.555321 tig0024855:-43296 None:intergenic
TTGGAACTTATGTATTTACT+GGG 0.557306 tig0024855:+39513 Msa1420820:five_prime_UTR
AGATGTTTGCGACCCTCACC+AGG 0.558500 tig0024855:-40052 None:intergenic
AATAGCTCATAGCTATATGT+TGG 0.564569 tig0024855:+43822 Msa1420820:CDS
ACAAGTATCTTGGATGGCAA+TGG 0.566474 tig0024855:+40454 Msa1420820:CDS
AAAATCACCTGATAGTCTGA+AGG 0.567444 tig0024855:-42279 None:intergenic
TAAGGGTCCAAGTGGAGAAG+AGG 0.568996 tig0024855:+42251 Msa1420820:CDS
AAGGTCTGAAGTTGAACCAA+TGG 0.569408 tig0024855:+39537 Msa1420820:exon
GCTATCCTCATGGATTCTAT+GGG 0.571745 tig0024855:+40251 Msa1420820:CDS
ATGAAAATGAGTTATTTAGT+GGG 0.579900 tig0024855:+43224 Msa1420820:CDS
TTGAAGTGATATTGATCCGG+TGG 0.584608 tig0024855:-44244 None:intergenic
AATTTGAAGTGATATTGATC+CGG 0.587951 tig0024855:-44247 None:intergenic
ACTGTATACAGCGACAGGGC+AGG 0.588449 tig0024855:+40117 Msa1420820:CDS
TACGCTGCAAAGTCCTGGTG+AGG 0.589117 tig0024855:+40039 Msa1420820:CDS
GCTTTAGACGGTGGAGATCG+TGG 0.589470 tig0024855:+42165 Msa1420820:CDS
AAATCACCTGATAGTCTGAA+GGG 0.590641 tig0024855:-42278 None:intergenic
CTGTGTATATCGGGAGAAGT+GGG 0.591652 tig0024855:+40293 Msa1420820:CDS
TGTAGTACCGTTTATCCCAA+GGG 0.591780 tig0024855:-43295 None:intergenic
TGTCCAGCTTCACCAGTTGA+GGG 0.593662 tig0024855:-43519 None:intergenic
GCTTATTACAAAGCTTTAGA+CGG 0.595148 tig0024855:+42153 Msa1420820:CDS
CTAAGGTTTCATAGCTGCGA+GGG 0.602792 tig0024855:+43775 Msa1420820:intron
CATTGAAACTGAGAATGCAT+CGG 0.606312 tig0024855:-43066 None:intergenic
CTAATTTCTCAGAGCCTGCA+AGG 0.607880 tig0024855:+40575 Msa1420820:CDS
TGACCGAGAAGAGTTAAGGA+AGG 0.608155 tig0024855:+39591 Msa1420820:CDS
GAATGTGTGGATGCAGCAGA+TGG 0.613326 tig0024855:+41895 Msa1420820:CDS
TGGGATGAATTTGCAGAATG+AGG 0.622757 tig0024855:+40876 Msa1420820:CDS
TATTACAAAGCTTTAGACGG+TGG 0.625435 tig0024855:+42156 Msa1420820:CDS
CTTCCATTTAAGGGTCCAAG+TGG 0.631821 tig0024855:+42243 Msa1420820:CDS
TCCACCACAAGTATCTTGGA+TGG 0.634007 tig0024855:+40448 Msa1420820:CDS
ATTGCCATCCAAGATACTTG+TGG 0.634426 tig0024855:-40452 None:intergenic
AAAACCAACAGATGAGAATG+TGG 0.635279 tig0024855:+41918 Msa1420820:CDS
TGGCTGCTAATGAACATGCA+GGG 0.635842 tig0024855:-40411 None:intergenic
ATACAAACTATAGGAATGTG+TGG 0.637635 tig0024855:+41882 Msa1420820:intron
AATGATGCGCTATTTCACGC+AGG 0.642589 tig0024855:-43573 None:intergenic
ATGATGCGCTATTTCACGCA+GGG 0.642738 tig0024855:-43572 None:intergenic
TGATCGATGTTAACAAACTG+TGG 0.655361 tig0024855:+40317 Msa1420820:CDS
ACGCTGCAAAGTCCTGGTGA+GGG 0.658427 tig0024855:+40040 Msa1420820:CDS
TTCTATGGGCTTGATAAATG+TGG 0.661800 tig0024855:+40265 Msa1420820:CDS
ACCTGCTAGAAAGACACAGA+AGG 0.670061 tig0024855:+39567 Msa1420820:CDS
CCACTTCTCCCGATATACAC+AGG 0.672428 tig0024855:-40292 None:intergenic
TTTCTAAAGAAAGCACAACA+GGG 0.675323 tig0024855:-42203 None:intergenic
GCCATCCAAGATACTTGTGG+TGG 0.681743 tig0024855:-40449 None:intergenic
AATCTAATATTCTTCATACG+TGG 0.682538 tig0024855:-43986 None:intergenic
TCTAAGGTTTCATAGCTGCG+AGG 0.685544 tig0024855:+43774 Msa1420820:intron
TCAAGCCCATAGAATCCATG+AGG 0.727495 tig0024855:-40256 None:intergenic
ACAGACTGTATACAGCGACA+GGG 0.731028 tig0024855:+40113 Msa1420820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATTATTTTGCGTTTT+TGG + tig0024855:39494-39513 Msa1420820:five_prime_UTR 15.0%
!! TATTCATATTAAGCAAAATA+GGG - tig0024855:39703-39722 None:intergenic 15.0%
!! ATATTCATATTAAGCAAAAT+AGG - tig0024855:39704-39723 None:intergenic 15.0%
!! ATAGATTGTAAATCATATAA+AGG + tig0024855:39784-39803 Msa1420820:intron 15.0%
!! TTGTTTCATAATTTACTATT+TGG + tig0024855:40501-40520 Msa1420820:intron 15.0%
!!! AATTTTGAATTTTGTATACT+TGG - tig0024855:41296-41315 None:intergenic 15.0%
!! GTAAAAATATCTTTGAATAT+TGG - tig0024855:41613-41632 None:intergenic 15.0%
!!! TTTCTTTTTATTTTGTGAAT+TGG + tig0024855:41824-41843 Msa1420820:intron 15.0%
!!! AAAATAGTTTTGAAAAAATG+TGG - tig0024855:42383-42402 None:intergenic 15.0%
!!! TAAGGTTGATTATAAAAAAA+GGG - tig0024855:42611-42630 None:intergenic 15.0%
!!! TTAAGGTTGATTATAAAAAA+AGG - tig0024855:42612-42631 None:intergenic 15.0%
!!! TTTTATAATCAACCTTAAAT+AGG + tig0024855:42614-42633 Msa1420820:intron 15.0%
!!! GTTAATATTTACAGTTTTTA+TGG + tig0024855:42720-42739 Msa1420820:intron 15.0%
!! TTAATGTTAAACATAATTGT+AGG + tig0024855:42919-42938 Msa1420820:intron 15.0%
!! CCAAATATAATTTCTTTACT+CGG + tig0024855:40925-40944 Msa1420820:intron 20.0%
!! GTTAAATAACATTCTAAACT+CGG + tig0024855:41078-41097 Msa1420820:intron 20.0%
!! GAATAAAGGTAAAATATTCA+TGG + tig0024855:42035-42054 Msa1420820:CDS 20.0%
!!! TTCATATTGATTTTTAGAGT+TGG + tig0024855:42127-42146 Msa1420820:intron 20.0%
!!! ACTAAATAACTCATTTTCAT+TGG - tig0024855:43224-43243 None:intergenic 20.0%
!! AATGAAAATGAGTTATTTAG+TGG + tig0024855:43223-43242 Msa1420820:CDS 20.0%
!! ATGAAAATGAGTTATTTAGT+GGG + tig0024855:43224-43243 Msa1420820:CDS 20.0%
!!! GTATTTTGAACTAAAGTATA+TGG + tig0024855:43692-43711 Msa1420820:intron 20.0%
!! TGTCATTAATATCAATATCT+GGG - tig0024855:43863-43882 None:intergenic 20.0%
!! ATGTCATTAATATCAATATC+TGG - tig0024855:43864-43883 None:intergenic 20.0%
!!! AGAATTATAGTTCTTTTCTT+GGG - tig0024855:44053-44072 None:intergenic 20.0%
!!! TAGAATTATAGTTCTTTTCT+TGG - tig0024855:44054-44073 None:intergenic 20.0%
!! CAACAATAGAAAAAAAGATT+TGG - tig0024855:44125-44144 None:intergenic 20.0%
!! TTTGGAACTTATGTATTTAC+TGG + tig0024855:39512-39531 Msa1420820:five_prime_UTR 25.0%
! TTGGAACTTATGTATTTACT+GGG + tig0024855:39513-39532 Msa1420820:five_prime_UTR 25.0%
!!! AATGAACAATTTTTAGAGCT+GGG + tig0024855:39622-39641 Msa1420820:CDS 25.0%
! AATATTAAGCATACCTATGT+TGG - tig0024855:39678-39697 None:intergenic 25.0%
! TTGCTTAATATGAATATGAC+AGG + tig0024855:39707-39726 Msa1420820:intron 25.0%
!! ATTTTGCAGTACATGTTATA+AGG + tig0024855:39849-39868 Msa1420820:intron 25.0%
! TTATAAGGTTGCAACTATAA+GGG + tig0024855:39864-39883 Msa1420820:intron 25.0%
! AGGGAAAGAAAATATGTTAT+AGG + tig0024855:39883-39902 Msa1420820:intron 25.0%
! ACTTCTCAAAACTGAATTTA+TGG + tig0024855:39947-39966 Msa1420820:intron 25.0%
! CTTCTCAAAACTGAATTTAT+GGG + tig0024855:39948-39967 Msa1420820:intron 25.0%
!!! ATTAATTTGCCTCGAAAAAA+TGG + tig0024855:39992-40011 Msa1420820:intron 25.0%
!! AAACATCTATATTCAGCTTT+TGG + tig0024855:40067-40086 Msa1420820:CDS 25.0%
!! AACATCTATATTCAGCTTTT+GGG + tig0024855:40068-40087 Msa1420820:CDS 25.0%
!!! TTTCGATGTCATTCATTTTT+TGG + tig0024855:40180-40199 Msa1420820:intron 25.0%
!!! TCATTTTTTGGTACATAATC+AGG + tig0024855:40192-40211 Msa1420820:intron 25.0%
! TGTGATTGTATTATTCTTCT+AGG + tig0024855:40546-40565 Msa1420820:intron 25.0%
! GTGATTGTATTATTCTTCTA+GGG + tig0024855:40547-40566 Msa1420820:intron 25.0%
!! TTTTATTGTAGCAGATGATT+TGG + tig0024855:40736-40755 Msa1420820:intron 25.0%
! AAATTCATCCCACTATTAAA+GGG - tig0024855:40868-40887 None:intergenic 25.0%
! CCGAGTAAAGAAATTATATT+TGG - tig0024855:40928-40947 None:intergenic 25.0%
! ACTTTAATGCAATGTAGTTA+AGG + tig0024855:41249-41268 Msa1420820:intron 25.0%
!! AACAATTTCTTTTGACAGAT+TGG + tig0024855:41430-41449 Msa1420820:intron 25.0%
!!! TATTGCAAGTTCTGATATTT+TGG + tig0024855:41643-41662 Msa1420820:intron 25.0%
! GAAAAATGAATTAACACGAA+TGG - tig0024855:41808-41827 None:intergenic 25.0%
! TTCAATGGAATACAAACTAT+AGG + tig0024855:41873-41892 Msa1420820:intron 25.0%
!!! TATTGATTTTTAGAGTTGGT+TGG + tig0024855:42131-42150 Msa1420820:intron 25.0%
! TTATTATAACAAATGCGCAA+TGG - tig0024855:42480-42499 None:intergenic 25.0%
! ATAATAACATTTAGTCGCAT+TGG + tig0024855:42493-42512 Msa1420820:intron 25.0%
! GTTGATTATAAAAAAAGGGT+TGG - tig0024855:42607-42626 None:intergenic 25.0%
! ATGTTAAACATAATTGTAGG+TGG + tig0024855:42922-42941 Msa1420820:intron 25.0%
! ATTGATCATCTCAAAATATC+CGG + tig0024855:43030-43049 Msa1420820:CDS 25.0%
! CTATATGTTACTATCGAAAA+TGG - tig0024855:43136-43155 None:intergenic 25.0%
!! CATTTTCGATAGTAACATAT+AGG + tig0024855:43134-43153 Msa1420820:intron 25.0%
! AATCTAATATTCTTCATACG+TGG - tig0024855:43989-44008 None:intergenic 25.0%
! ACGTATGAAGAATATTAGAT+TGG + tig0024855:43988-44007 Msa1420820:CDS 25.0%
!! AATTTGAAGTGATATTGATC+CGG - tig0024855:44250-44269 None:intergenic 25.0%
ACTTATGTATTTACTGGGAA+AGG + tig0024855:39518-39537 Msa1420820:five_prime_UTR 30.0%
!!! CAATGAACAATTTTTAGAGC+TGG + tig0024855:39621-39640 Msa1420820:CDS 30.0%
ATATGAATATGACAGGTTAG+TGG + tig0024855:39714-39733 Msa1420820:intron 30.0%
TATGAATATGACAGGTTAGT+GGG + tig0024855:39715-39734 Msa1420820:intron 30.0%
GTTATAAGGTTGCAACTATA+AGG + tig0024855:39863-39882 Msa1420820:intron 30.0%
! TTTTTCACTTCTGTGTATTC+TGG - tig0024855:40229-40248 None:intergenic 30.0%
CTAATGTTCCCTTTAATAGT+GGG + tig0024855:40857-40876 Msa1420820:CDS 30.0%
CAAATTCATCCCACTATTAA+AGG - tig0024855:40869-40888 None:intergenic 30.0%
! TGTGCAAAATTTTACGTTGA+AGG + tig0024855:41113-41132 Msa1420820:intron 30.0%
! AACAACAGGAACATAGTTTT+TGG - tig0024855:41331-41350 None:intergenic 30.0%
TATCACTTGATTTCAAAGCT+AGG + tig0024855:41370-41389 Msa1420820:intron 30.0%
AAGTTTCAATCATAGATCCT+AGG + tig0024855:41479-41498 Msa1420820:intron 30.0%
ACTTGCTTTACAATATAGTG+TGG + tig0024855:41559-41578 Msa1420820:intron 30.0%
TGGAATTATTCATTGCAAGT+TGG - tig0024855:41782-41801 None:intergenic 30.0%
AGAGAACAAAGATTAGAAGA+CGG - tig0024855:41854-41873 None:intergenic 30.0%
CTAATCTTTGTTCTCTTCAA+TGG + tig0024855:41858-41877 Msa1420820:intron 30.0%
ATACAAACTATAGGAATGTG+TGG + tig0024855:41882-41901 Msa1420820:intron 30.0%
!! ATTCGTTTTAGATTGCTGAA+AGG - tig0024855:41991-42010 None:intergenic 30.0%
! AGCAATCTAAAACGAATTTC+AGG + tig0024855:41994-42013 Msa1420820:CDS 30.0%
GAGAGTAGAAATCAGAATAA+AGG + tig0024855:42021-42040 Msa1420820:CDS 30.0%
ACATTGTGCTTCTAACTAAT+TGG + tig0024855:42097-42116 Msa1420820:intron 30.0%
!! GCTTATTACAAAGCTTTAGA+CGG + tig0024855:42153-42172 Msa1420820:CDS 30.0%
! TTTCTAAAGAAAGCACAACA+GGG - tig0024855:42206-42225 None:intergenic 30.0%
!! TTTTCTAAAGAAAGCACAAC+AGG - tig0024855:42207-42226 None:intergenic 30.0%
! AATGGAAGCAGTTTAACTTT+AGG - tig0024855:42231-42250 None:intergenic 30.0%
AGTTAAACTGCTTCCATTTA+AGG + tig0024855:42233-42252 Msa1420820:CDS 30.0%
GTTAAACTGCTTCCATTTAA+GGG + tig0024855:42234-42253 Msa1420820:CDS 30.0%
AACAGTCACAAAATAGATAG+TGG - tig0024855:42336-42355 None:intergenic 30.0%
! AGCCTAAGTGTAGTAATTTT+CGG + tig0024855:42440-42459 Msa1420820:intron 30.0%
! TCAGATTGTTCCAGATTTTA+GGG + tig0024855:42545-42564 Msa1420820:intron 30.0%
! TCCGTATAATACCTGTTTTA+GGG + tig0024855:42568-42587 Msa1420820:CDS 30.0%
ACCCTAAAACAGGTATTATA+CGG - tig0024855:42572-42591 None:intergenic 30.0%
TATTATACGAACCCTAAAAC+AGG - tig0024855:42582-42601 None:intergenic 30.0%
ATCAACCTTAAATAGGTTGT+TGG + tig0024855:42621-42640 Msa1420820:intron 30.0%
ATAGATGATTGGGTGAAAAT+TGG + tig0024855:42771-42790 Msa1420820:CDS 30.0%
!!! TTCTTTTAGAACCTTGACTT+TGG - tig0024855:42805-42824 None:intergenic 30.0%
AAACATAATTGTAGGTGGAT+TGG + tig0024855:42927-42946 Msa1420820:intron 30.0%
GTTATTCCAAAACCTGATAA+TGG + tig0024855:42949-42968 Msa1420820:intron 30.0%
TACTATCGAAAATGGTTAGA+AGG - tig0024855:43128-43147 None:intergenic 30.0%
CGATAGTAACATATAGGAAT+TGG + tig0024855:43140-43159 Msa1420820:intron 30.0%
!! TTTCAGGTTAACTACATCTT+GGG + tig0024855:43191-43210 Msa1420820:intron 30.0%
!! ACATTAGGTTGATGTATTTG+AGG - tig0024855:43360-43379 None:intergenic 30.0%
TCAAGACTAACTTCTACATT+AGG - tig0024855:43375-43394 None:intergenic 30.0%
TATCAAGTTCATGTAGAAGA+GGG - tig0024855:43444-43463 None:intergenic 30.0%
ATATCAAGTTCATGTAGAAG+AGG - tig0024855:43445-43464 None:intergenic 30.0%
CTTCTACATGAACTTGATAT+TGG + tig0024855:43445-43464 Msa1420820:intron 30.0%
CATCAAGAAAACCAAGATTA+GGG - tig0024855:43600-43619 None:intergenic 30.0%
TGACAATGTTGACAATTCTA+AGG + tig0024855:43758-43777 Msa1420820:intron 30.0%
AATAGCTCATAGCTATATGT+TGG + tig0024855:43822-43841 Msa1420820:CDS 30.0%
! TTAGAGCTGGGTAACATTTT+AGG + tig0024855:39634-39653 Msa1420820:CDS 35.0%
GAAACTTCACTTTCCAACAT+AGG + tig0024855:39662-39681 Msa1420820:intron 35.0%
!!! AATCCTGAACCATTTTTTCG+AGG - tig0024855:40004-40023 None:intergenic 35.0%
GTGAAAAAATGCTATCCTCA+TGG + tig0024855:40241-40260 Msa1420820:CDS 35.0%
TTCTATGGGCTTGATAAATG+TGG + tig0024855:40265-40284 Msa1420820:CDS 35.0%
TGATCGATGTTAACAAACTG+TGG + tig0024855:40317-40336 Msa1420820:CDS 35.0%
TGATAGCAATTATTACCCTG+AGG + tig0024855:40624-40643 Msa1420820:intron 35.0%
!! GATCAACAAAAAGTACCTCA+GGG - tig0024855:40642-40661 None:intergenic 35.0%
!! TGATCAACAAAAAGTACCTC+AGG - tig0024855:40643-40662 None:intergenic 35.0%
ATCAGCATCAGTATCACAAA+AGG - tig0024855:40826-40845 None:intergenic 35.0%
TAAAGGGAACATTAGCATCA+AGG - tig0024855:40852-40871 None:intergenic 35.0%
GCTAATGTTCCCTTTAATAG+TGG + tig0024855:40856-40875 Msa1420820:CDS 35.0%
TTACTCGGTTGTAGCATTAA+TGG + tig0024855:40940-40959 Msa1420820:intron 35.0%
GTGTATGAGTTAATTTCCCT+TGG + tig0024855:40979-40998 Msa1420820:intron 35.0%
CCATATAATAGAGCTTCCAA+GGG - tig0024855:40998-41017 None:intergenic 35.0%
ACCATATAATAGAGCTTCCA+AGG - tig0024855:40999-41018 None:intergenic 35.0%
TACGTTGAAGGAAAATCTCA+TGG + tig0024855:41125-41144 Msa1420820:intron 35.0%
GTTGAAGAGAGATTCTCTTA+AGG - tig0024855:41203-41222 None:intergenic 35.0%
!! CAAGTGATAGCTTTAAAGCA+TGG - tig0024855:41359-41378 None:intergenic 35.0%
TACAAATCTGTCACAAGTGA+TGG - tig0024855:41517-41536 None:intergenic 35.0%
TGAATTAACACGAATGGTGA+TGG - tig0024855:41802-41821 None:intergenic 35.0%
GAGAACAAAGATTAGAAGAC+GGG - tig0024855:41853-41872 None:intergenic 35.0%
AAAACCAACAGATGAGAATG+TGG + tig0024855:41918-41937 Msa1420820:CDS 35.0%
TGTGCTTCTAACTAATTGGT+TGG + tig0024855:42101-42120 Msa1420820:intron 35.0%
!! TATTACAAAGCTTTAGACGG+TGG + tig0024855:42156-42175 Msa1420820:CDS 35.0%
AAATCACCTGATAGTCTGAA+GGG - tig0024855:42281-42300 None:intergenic 35.0%
AAAATCACCTGATAGTCTGA+AGG - tig0024855:42282-42301 None:intergenic 35.0%
!! AGGCTTGTTTGATTGTGTTT+TGG - tig0024855:42425-42444 None:intergenic 35.0%
GTCCGAAAATTACTACACTT+AGG - tig0024855:42445-42464 None:intergenic 35.0%
! ATCTGGAACAATCTGACAAA+AGG - tig0024855:42541-42560 None:intergenic 35.0%
! GTCAGATTGTTCCAGATTTT+AGG + tig0024855:42544-42563 Msa1420820:intron 35.0%
ATTATACGGACCCTAAAATC+TGG - tig0024855:42558-42577 None:intergenic 35.0%
! GTCCGTATAATACCTGTTTT+AGG + tig0024855:42567-42586 Msa1420820:CDS 35.0%
TGTAGCCAACAACCTATTTA+AGG - tig0024855:42629-42648 None:intergenic 35.0%
! TAAATAGGTTGTTGGCTACA+TGG + tig0024855:42629-42648 Msa1420820:intron 35.0%
CAGTGACTTCATAGATGATT+GGG + tig0024855:42761-42780 Msa1420820:intron 35.0%
TGGTTTATCTTCCAAAGTCA+AGG + tig0024855:42791-42810 Msa1420820:CDS 35.0%
! AATGGTCCATTATCAGGTTT+TGG - tig0024855:42958-42977 None:intergenic 35.0%
CATTGAAACTGAGAATGCAT+CGG - tig0024855:43069-43088 None:intergenic 35.0%
! TTTTTGCTTCCTTGTGTTTC+AGG + tig0024855:43175-43194 Msa1420820:intron 35.0%
TGTAGTTAACCTGAAACACA+AGG - tig0024855:43187-43206 None:intergenic 35.0%
!! GTTTCAGGTTAACTACATCT+TGG + tig0024855:43190-43209 Msa1420820:intron 35.0%
!! ATTGTGATGATGGTAAGACA+TGG + tig0024855:43318-43337 Msa1420820:intron 35.0%
GCTGCACAAATAAATGTATC+AGG - tig0024855:43487-43506 None:intergenic 35.0%
GCATCAAGAAAACCAAGATT+AGG - tig0024855:43601-43620 None:intergenic 35.0%
ACAACTCCAAAGATATGCTT+GGG - tig0024855:43633-43652 None:intergenic 35.0%
!! GTATATGGCTTTGTCTAACA+TGG + tig0024855:43707-43726 Msa1420820:intron 35.0%
!!! GTCGCTTTTCTCTTTTAAGT+TGG + tig0024855:43729-43748 Msa1420820:intron 35.0%
TGTCTGAATTCGTGAGTATA+AGG + tig0024855:43883-43902 Msa1420820:intron 35.0%
!! CAATTGCAGTCTATTGACTT+CGG + tig0024855:43949-43968 Msa1420820:CDS 35.0%
! AAGGTCTGAAGTTGAACCAA+TGG + tig0024855:39537-39556 Msa1420820:exon 40.0%
CTAGCAGGTGTAATTTCCAT+TGG - tig0024855:39556-39575 None:intergenic 40.0%
GATCCTTCCTTAACTCTTCT+CGG - tig0024855:39597-39616 None:intergenic 40.0%
! AATATGACAGGTTAGTGGGT+TGG + tig0024855:39719-39738 Msa1420820:intron 40.0%
TTGCCTCGAAAAAATGGTTC+AGG + tig0024855:39998-40017 Msa1420820:intron 40.0%
!!! GCTTTTGGGATGTTAACAGA+TGG + tig0024855:40082-40101 Msa1420820:CDS 40.0%
TTGGGATGTTAACAGATGGT+TGG + tig0024855:40086-40105 Msa1420820:CDS 40.0%
TGCTATCCTCATGGATTCTA+TGG + tig0024855:40250-40269 Msa1420820:CDS 40.0%
GCTATCCTCATGGATTCTAT+GGG + tig0024855:40251-40270 Msa1420820:CDS 40.0%
GGCAAATAACCACACAAGAA+AGG + tig0024855:40338-40357 Msa1420820:CDS 40.0%
CTTGATAAGCCTTTCTTGTG+TGG - tig0024855:40350-40369 None:intergenic 40.0%
ATTGCCATCCAAGATACTTG+TGG - tig0024855:40455-40474 None:intergenic 40.0%
ACAAGTATCTTGGATGGCAA+TGG + tig0024855:40454-40473 Msa1420820:CDS 40.0%
TCCATGAAGATTTACCTTGC+AGG - tig0024855:40592-40611 None:intergenic 40.0%
TAGCTCATGAGCAGATGATT+TGG + tig0024855:40663-40682 Msa1420820:intron 40.0%
TGGGATGAATTTGCAGAATG+AGG + tig0024855:40876-40895 Msa1420820:CDS 40.0%
GATGAATTTGCAGAATGAGG+TGG + tig0024855:40879-40898 Msa1420820:intron 40.0%
CCCTTGGAAGCTCTATTATA+TGG + tig0024855:40995-41014 Msa1420820:intron 40.0%
AAAGCATGGCAACAAACAAC+AGG - tig0024855:41345-41364 None:intergenic 40.0%
!!! TTCTGATATTTTGGCAGTCC+AGG + tig0024855:41652-41671 Msa1420820:intron 40.0%
!!! TCTGATATTTTGGCAGTCCA+GGG + tig0024855:41653-41672 Msa1420820:intron 40.0%
TGTCTTTATGCAAACCTACC+AGG - tig0024855:41733-41752 None:intergenic 40.0%
GTTGGAGTGAGAAGATATCA+GGG - tig0024855:41764-41783 None:intergenic 40.0%
AGTTGGAGTGAGAAGATATC+AGG - tig0024855:41765-41784 None:intergenic 40.0%
GAATCCACATTCTCATCTGT+TGG - tig0024855:41925-41944 None:intergenic 40.0%
! CATCAGCATTTTCAGTAGAC+AGG - tig0024855:41951-41970 None:intergenic 40.0%
GCAGTGACTTCATAGATGAT+TGG + tig0024855:42760-42779 Msa1420820:intron 40.0%
TGGAGTAATGGTCCATTATC+AGG - tig0024855:42964-42983 None:intergenic 40.0%
!!! TCGTGATTTTTCAAGCTCTC+AGG + tig0024855:43091-43110 Msa1420820:intron 40.0%
CTTCTATGATGAACTTGGAC+TGG - tig0024855:43266-43285 None:intergenic 40.0%
ACGCACTTCTATGATGAACT+TGG - tig0024855:43271-43290 None:intergenic 40.0%
TGTAGTACCGTTTATCCCAA+GGG - tig0024855:43298-43317 None:intergenic 40.0%
TTGTAGTACCGTTTATCCCA+AGG - tig0024855:43299-43318 None:intergenic 40.0%
CGGTACTACAATTGTGATGA+TGG + tig0024855:43308-43327 Msa1420820:CDS 40.0%
ATACTGCCCAAGCATATCTT+TGG + tig0024855:43624-43643 Msa1420820:CDS 40.0%
CACAACTCCAAAGATATGCT+TGG - tig0024855:43634-43653 None:intergenic 40.0%
AGCTCATAGCTATATGTTGG+AGG + tig0024855:43825-43844 Msa1420820:CDS 40.0%
! TCAAATCTGCTAGTCTGCAA+AGG - tig0024855:44179-44198 None:intergenic 40.0%
TTGAAGTGATATTGATCCGG+TGG - tig0024855:44247-44266 None:intergenic 40.0%
ACCTGCTAGAAAGACACAGA+AGG + tig0024855:39567-39586 Msa1420820:CDS 45.0%
TGACCGAGAAGAGTTAAGGA+AGG + tig0024855:39591-39610 Msa1420820:CDS 45.0%
GAAGCTGGAAAAAAACCACC+TGG + tig0024855:39745-39764 Msa1420820:intron 45.0%
TGGAAAAAAACCACCTGGTG+TGG + tig0024855:39750-39769 Msa1420820:intron 45.0%
AACAGACTGTATACAGCGAC+AGG + tig0024855:40112-40131 Msa1420820:CDS 45.0%
ACAGACTGTATACAGCGACA+GGG + tig0024855:40113-40132 Msa1420820:CDS 45.0%
TCAAGCCCATAGAATCCATG+AGG - tig0024855:40259-40278 None:intergenic 45.0%
TGTGGCAGACCTGTGTATAT+CGG + tig0024855:40283-40302 Msa1420820:CDS 45.0%
CTGTGTATATCGGGAGAAGT+GGG + tig0024855:40293-40312 Msa1420820:CDS 45.0%
TGGCTGCTAATGAACATGCA+GGG - tig0024855:40414-40433 None:intergenic 45.0%
TTGGCTGCTAATGAACATGC+AGG - tig0024855:40415-40434 None:intergenic 45.0%
! GGTGGATGCTATGTGTCTTT+TGG - tig0024855:40434-40453 None:intergenic 45.0%
AGCATCCACCACAAGTATCT+TGG + tig0024855:40444-40463 Msa1420820:CDS 45.0%
TCCACCACAAGTATCTTGGA+TGG + tig0024855:40448-40467 Msa1420820:CDS 45.0%
CTAATTTCTCAGAGCCTGCA+AGG + tig0024855:40575-40594 Msa1420820:CDS 45.0%
GCCTGCAAGGTAAATCTTCA+TGG + tig0024855:40588-40607 Msa1420820:intron 45.0%
GGAAAATCTCATGGCTGACT+TGG + tig0024855:41134-41153 Msa1420820:intron 45.0%
AGATTGCTCTTGACACAGCA+AGG + tig0024855:41170-41189 Msa1420820:intron 45.0%
GATGGCTAAACTACGTTCCT+AGG - tig0024855:41499-41518 None:intergenic 45.0%
! ACACATTCTCTAGGTGCTAC+GGG - tig0024855:41710-41729 None:intergenic 45.0%
GACACATTCTCTAGGTGCTA+CGG - tig0024855:41711-41730 None:intergenic 45.0%
CTTCCATTTAAGGGTCCAAG+TGG + tig0024855:42243-42262 Msa1420820:CDS 45.0%
TCTCCACTTGGACCCTTAAA+TGG - tig0024855:42249-42268 None:intergenic 45.0%
GGAAAACCCTTCAGACTATC+AGG + tig0024855:42272-42291 Msa1420820:CDS 45.0%
GTTGCAGCATACTGGAGTAA+TGG - tig0024855:42976-42995 None:intergenic 45.0%
AAGATGCTGTTGCAGCATAC+TGG - tig0024855:42984-43003 None:intergenic 45.0%
! GCTGCAACAGCATCTTTTCT+CGG + tig0024855:42988-43007 Msa1420820:CDS 45.0%
! ATGATGCGCTATTTCACGCA+GGG - tig0024855:43575-43594 None:intergenic 45.0%
! AATGATGCGCTATTTCACGC+AGG - tig0024855:43576-43595 None:intergenic 45.0%
GCGCATCATTTCCCTAATCT+TGG + tig0024855:43586-43605 Msa1420820:CDS 45.0%
! TCTAAGGTTTCATAGCTGCG+AGG + tig0024855:43774-43793 Msa1420820:intron 45.0%
CTAAGGTTTCATAGCTGCGA+GGG + tig0024855:43775-43794 Msa1420820:intron 45.0%
! CATTTTATCACCGCCAATGC+AGG + tig0024855:43913-43932 Msa1420820:intron 45.0%
AGTTCCAAAACCTGCATTGG+CGG - tig0024855:43926-43945 None:intergenic 45.0%
CAGAGTTCCAAAACCTGCAT+TGG - tig0024855:43929-43948 None:intergenic 45.0%
!! TCTATTGACTTCGGTGTCGT+TGG + tig0024855:43958-43977 Msa1420820:CDS 45.0%
! GCCTTCTGTGTCTTTCTAGC+AGG - tig0024855:39571-39590 None:intergenic 50.0%
AGGCTGACCGAGAAGAGTTA+AGG + tig0024855:39587-39606 Msa1420820:CDS 50.0%
!! TTAGTGGGTTGGACAGAAGC+TGG + tig0024855:39730-39749 Msa1420820:intron 50.0%
ATGAGTTTAGCAGCCACACC+AGG - tig0024855:39766-39785 None:intergenic 50.0%
GAGTATACGCTGCAAAGTCC+TGG + tig0024855:40034-40053 Msa1420820:CDS 50.0%
GTGGCAGACCTGTGTATATC+GGG + tig0024855:40284-40303 Msa1420820:CDS 50.0%
CCACTTCTCCCGATATACAC+AGG - tig0024855:40295-40314 None:intergenic 50.0%
CCTGTGTATATCGGGAGAAG+TGG + tig0024855:40292-40311 Msa1420820:CDS 50.0%
GCCATCCAAGATACTTGTGG+TGG - tig0024855:40452-40471 None:intergenic 50.0%
ACTCAAGAGATGCATCACCC+TGG - tig0024855:41673-41692 None:intergenic 50.0%
AGCACCTAGAGAATGTGTCC+TGG + tig0024855:41712-41731 Msa1420820:intron 50.0%
CCTACCAGGACACATTCTCT+AGG - tig0024855:41719-41738 None:intergenic 50.0%
CCTAGAGAATGTGTCCTGGT+AGG + tig0024855:41716-41735 Msa1420820:intron 50.0%
GAATGTGTGGATGCAGCAGA+TGG + tig0024855:41895-41914 Msa1420820:CDS 50.0%
TAAGGGTCCAAGTGGAGAAG+AGG + tig0024855:42251-42270 Msa1420820:CDS 50.0%
! GGGTTTTCCTCTTCTCCACT+TGG - tig0024855:42261-42280 None:intergenic 50.0%
! ATAGAAGTGCGTCGATCCCT+TGG + tig0024855:43279-43298 Msa1420820:CDS 50.0%
! TAGAAGTGCGTCGATCCCTT+GGG + tig0024855:43280-43299 Msa1420820:CDS 50.0%
CGTCGATCCCTTGGGATAAA+CGG + tig0024855:43288-43307 Msa1420820:CDS 50.0%
TGCAACTTCATGCCCTCAAC+TGG + tig0024855:43507-43526 Msa1420820:CDS 50.0%
TGTCCAGCTTCACCAGTTGA+GGG - tig0024855:43522-43541 None:intergenic 50.0%
ATGTCCAGCTTCACCAGTTG+AGG - tig0024855:43523-43542 None:intergenic 50.0%
GGGCATCACTTCTGCATCAA+TGG + tig0024855:43795-43814 Msa1420820:CDS 50.0%
! ATCACCGCCAATGCAGGTTT+TGG + tig0024855:43919-43938 Msa1420820:intron 50.0%
CAAGTGTCTAACTGCTCCAC+CGG + tig0024855:44228-44247 Msa1420820:CDS 50.0%
AGTTTAGCAGCCACACCAGG+TGG - tig0024855:39763-39782 None:intergenic 55.0%
TACGCTGCAAAGTCCTGGTG+AGG + tig0024855:40039-40058 Msa1420820:CDS 55.0%
ACGCTGCAAAGTCCTGGTGA+GGG + tig0024855:40040-40059 Msa1420820:CDS 55.0%
AGATGTTTGCGACCCTCACC+AGG - tig0024855:40055-40074 None:intergenic 55.0%
ACTGTATACAGCGACAGGGC+AGG + tig0024855:40117-40136 Msa1420820:CDS 55.0%
! GCTTTAGACGGTGGAGATCG+TGG + tig0024855:42165-42184 Msa1420820:CDS 55.0%
! GGTGGAGATCGTGGCATTGA+TGG + tig0024855:42174-42193 Msa1420820:CDS 55.0%
!! CATCGGTTTCGCAGTTGCAC+CGG - tig0024855:43052-43071 None:intergenic 55.0%
ATGCCCTCAACTGGTGAAGC+TGG + tig0024855:43516-43535 Msa1420820:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0024855 gene 39481 44290 39481 ID=Msa1420820;Name=Msa1420820
tig0024855 mRNA 39481 44290 39481 ID=Msa1420820-mRNA-1;Parent=Msa1420820;Name=Msa1420820-mRNA-1;_AED=0.33;_eAED=0.38;_QI=75|0.07|0.2|0.93|1|1|15|0|614
tig0024855 exon 39481 39655 39481 ID=Msa1420820-mRNA-1:exon:1730;Parent=Msa1420820-mRNA-1
tig0024855 exon 40020 40138 40020 ID=Msa1420820-mRNA-1:exon:1731;Parent=Msa1420820-mRNA-1
tig0024855 exon 40214 40480 40214 ID=Msa1420820-mRNA-1:exon:1732;Parent=Msa1420820-mRNA-1
tig0024855 exon 40568 40596 40568 ID=Msa1420820-mRNA-1:exon:1733;Parent=Msa1420820-mRNA-1
tig0024855 exon 40786 40897 40786 ID=Msa1420820-mRNA-1:exon:1734;Parent=Msa1420820-mRNA-1
tig0024855 exon 41895 42059 41895 ID=Msa1420820-mRNA-1:exon:1735;Parent=Msa1420820-mRNA-1
tig0024855 exon 42144 42293 42144 ID=Msa1420820-mRNA-1:exon:1736;Parent=Msa1420820-mRNA-1
tig0024855 exon 42549 42589 42549 ID=Msa1420820-mRNA-1:exon:1737;Parent=Msa1420820-mRNA-1
tig0024855 exon 42764 42857 42764 ID=Msa1420820-mRNA-1:exon:1738;Parent=Msa1420820-mRNA-1
tig0024855 exon 42985 43092 42985 ID=Msa1420820-mRNA-1:exon:1739;Parent=Msa1420820-mRNA-1
tig0024855 exon 43197 43329 43197 ID=Msa1420820-mRNA-1:exon:1740;Parent=Msa1420820-mRNA-1
tig0024855 exon 43506 43683 43506 ID=Msa1420820-mRNA-1:exon:1741;Parent=Msa1420820-mRNA-1
tig0024855 exon 43780 43846 43780 ID=Msa1420820-mRNA-1:exon:1742;Parent=Msa1420820-mRNA-1
tig0024855 exon 43935 44110 43935 ID=Msa1420820-mRNA-1:exon:1743;Parent=Msa1420820-mRNA-1
tig0024855 exon 44185 44290 44185 ID=Msa1420820-mRNA-1:exon:1744;Parent=Msa1420820-mRNA-1
tig0024855 five_prime_UTR 39481 39555 39481 ID=Msa1420820-mRNA-1:five_prime_utr;Parent=Msa1420820-mRNA-1
tig0024855 CDS 39556 39655 39556 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
tig0024855 CDS 40020 40138 40020 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
tig0024855 CDS 40214 40480 40214 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
tig0024855 CDS 40568 40596 40568 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
tig0024855 CDS 40786 40897 40786 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
tig0024855 CDS 41895 42059 41895 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
tig0024855 CDS 42144 42293 42144 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
tig0024855 CDS 42549 42589 42549 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
tig0024855 CDS 42764 42857 42764 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
tig0024855 CDS 42985 43092 42985 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
tig0024855 CDS 43197 43329 43197 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
tig0024855 CDS 43506 43683 43506 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
tig0024855 CDS 43780 43846 43780 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
tig0024855 CDS 43935 44110 43935 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
tig0024855 CDS 44185 44290 44185 ID=Msa1420820-mRNA-1:cds;Parent=Msa1420820-mRNA-1
Gene Sequence

>Msa1420820

ATGGAAATTACACCTGCTAGAAAGACACAGAAGGCTGACCGAGAAGAGTTAAGGAAGGATCGACTCAATGAACAATTTTTAGAGCTGGGTAACATTTTAGGATTTTATTTCATTGAGTATACGCTGCAAAGTCCTGGTGAGGGTCGCAAACATCTATATTCAGCTTTTGGGATGTTAACAGATGGTTGGTATAACAGACTGTATACAGCGACAGGGCAGGAGTTCAAATTTCCAGAATACACAGAAGTGAAAAAATGCTATCCTCATGGATTCTATGGGCTTGATAAATGTGGCAGACCTGTGTATATCGGGAGAAGTGGGATGATCGATGTTAACAAACTGTGGCAAATAACCACACAAGAAAGGCTTATCAAGCATCATGTGTCAGAACAAGAGAAAACACTAAGAGTAAGATACCCTGCATGTTCATTAGCAGCCAAAAGACACATAGCATCCACCACAAGTATCTTGGATGGCAATGGAGTAGGAATGTCTAATTTCTCAGAGCCTGCAAGTGTAGCATTTGATAATGAATCATCTCTTTTTATGTTTCCTTTTGTGATACTGATGCTGATTTTCCTTGATGCTAATGTTCCCTTTAATAGTGGGATGAATTTGCAGAATGAGGAATGTGTGGATGCAGCAGATGGAAAACCAACAGATGAGAATGTGGATTCTTACCTGTCTACTGAAAATGCTGATGCTGATCTTAGAACTTTGCCTTTCAGCAATCTAAAACGAATTTCAGGAACAGAGAGTAGAAATCAGAATAAAGGTAAAATATTCATGGATAGTTGGTTGGCTTATTACAAAGCTTTAGACGGTGGAGATCGTGGCATTGATGGTGATTTCCCTGTTGTGCTTTCTTTAGAAAAACCTAAAGTTAAACTGCTTCCATTTAAGGGTCCAAGTGGAGAAGAGGAAAACCCTTCAGACTATCAGATTGTTCCAGATTTTAGGGTCCGTATAATACCTGTTTTAGGTGACTTCATAGATGATTGGGTGAAAATTGGTTTATCTTCCAAAGTCAAGGTTCTAAAAGAACATGAATGCAATGATTTCAAGCTAAAGATTACATATGCTGCAACAGCATCTTTTCTCGGTAAATTGTATAGTGATTACATTGATCATCTCAAAATATCCGGTGCAACTGCGAAACCGATGCATTCTCAGTTTCAATGCTTCGTTAACTACATCTTGGGACAAAATCCAATGAAAATGAGTTATTTAGTGGGATATGATGATAAGTTTCCAGTCCAAGTTCATCATAGAAGTGCGTCGATCCCTTGGGATAAACGGTACTACAATTGTGATGATGCTGCAACTTCATGCCCTCAACTGGTGAAGCTGGACATGCATAACTGTTCTTGTGTTAGCGATGAAACCCTGCGTGAAATAGCGCATCATTTCCCTAATCTTGGTTTTCTTGATGCATCATACTGCCCAAGCATATCTTTGGAGTTGTGCTTCAAATTGTACACTCGCTTTTTGCATATGTTTCATAGCTGCGAGGGCATCACTTCTGCATCAATGGCTGCAATAGCTCATAGCTATATGTTGGAGGTTTTGGAACTCTGCAATTGCAGTCTATTGACTTCGGTGTCGTTGGATCTTCCACGTATGAAGAATATTAGATTGGCGTACTGTCGCAAGTATGTTTCTGCTTCATTTTTTCTCTCCCAAGAAAAGAACTATAATTCTATTATTGATGTGTCTCTCGCTATTGCTTTTCACTTTCTACTAGCAGATTTGAACTTGAGTGCTATATCACTTTCTTCTATACAAGTGTCTAACTGCTCCACCGGATCAATATCACTTCAAATTCACTTCAAGTATGTCTTATAA

Protein sequence

>Msa1420820

MEITPARKTQKADREELRKDRLNEQFLELGNILGFYFIEYTLQSPGEGRKHLYSAFGMLTDGWYNRLYTATGQEFKFPEYTEVKKCYPHGFYGLDKCGRPVYIGRSGMIDVNKLWQITTQERLIKHHVSEQEKTLRVRYPACSLAAKRHIASTTSILDGNGVGMSNFSEPASVAFDNESSLFMFPFVILMLIFLDANVPFNSGMNLQNEECVDAADGKPTDENVDSYLSTENADADLRTLPFSNLKRISGTESRNQNKGKIFMDSWLAYYKALDGGDRGIDGDFPVVLSLEKPKVKLLPFKGPSGEEENPSDYQIVPDFRVRIIPVLGDFIDDWVKIGLSSKVKVLKEHECNDFKLKITYAATASFLGKLYSDYIDHLKISGATAKPMHSQFQCFVNYILGQNPMKMSYLVGYDDKFPVQVHHRSASIPWDKRYYNCDDAATSCPQLVKLDMHNCSCVSDETLREIAHHFPNLGFLDASYCPSISLELCFKLYTRFLHMFHSCEGITSASMAAIAHSYMLEVLELCNCSLLTSVSLDLPRMKNIRLAYCRKYVSASFFLSQEKNYNSIIDVSLAIAFHFLLADLNLSAISLSSIQVSNCSTGSISLQIHFKYVL*