AlfalfaGEDB | Msa0766080

M. sativa cultivar zhongmu-4 / Msa0766080

KEGG: K02915
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF01199.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0766080	XP_003613762.1	98.333	120	2	0	1	120	1	120	9.12e-78	235

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0766080	sp\|P40590\|RL34_PEA	94.958	119	6	0	1	119	1	119	7.66e-77	225

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0766080	G7KF74	98.333	120	2	0	1	120	1	120	4.36e-78	235

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032810	Msa0766080	0.858757	6.616635e-63	-8.615850e-47
Msa0038090	Msa0766080	0.813962	1.962646e-51	-8.615850e-47
Msa0045730	Msa0766080	0.821799	3.331042e-53	-8.615850e-47
Msa0048180	Msa0766080	0.824749	6.818610e-54	-8.615850e-47
Msa0114570	Msa0766080	0.822786	1.966479e-53	-8.615850e-47
Msa0116130	Msa0766080	0.847980	8.203222e-60	-8.615850e-47
Msa0116670	Msa0766080	0.843733	1.168617e-58	-8.615850e-47
Msa0133540	Msa0766080	0.803968	2.705893e-49	-8.615850e-47
Msa0138890	Msa0766080	0.870728	1.171766e-66	-8.615850e-47
Msa0167480	Msa0766080	0.807369	5.228885e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0766080	MtrunA17_Chr5g0417101	98.333	120	2	0	1	120	1	120	8.39e-82	235
Msa0766080	MtrunA17_Chr7g0217171	95.000	120	6	0	1	120	1	120	3.44e-79	228
Msa0766080	MtrunA17_Chr8g0361721	95.000	120	6	0	1	120	1	120	2.62e-78	226
Msa0766080	MtrunA17_Chr7g0217651	75.510	49	12	0	1	49	1	49	1.66e-21	80.5
Msa0766080	MtrunA17_Chr8g0343321	74.510	51	12	1	66	115	66	116	1.26e-17	72.8

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0766080	AT1G26880.1	92.500	120	9	1	120	1	120	8.16e-77	223
Msa0766080	AT1G69620.1	91.597	119	10	1	119	1	119	2.65e-75	219
Msa0766080	AT3G28900.1	88.333	120	14	1	120	1	120	1.69e-73	214
Msa0766080	AT1G26880.2	91.304	92	8	1	92	1	92	7.75e-58	174

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Find 56 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTAAATAAGCTCAG+CGG	0.755747	5_2:-27484571	Msa0766080:five_prime_UTR
AAACTCAACAATAAGCCGCA+AGG	0.652032	5_2:+27484599	None:intergenic
AAAGGAAAAGGTTTCCTCCA+AGG	0.589566	5_2:-27482399	Msa0766080:CDS
AAAGGTCCTCAAAATTCAGA+AGG	0.596465	5_2:-27482423	Msa0766080:CDS
AAATCTCTCTCGATCGAAAA+TGG	0.311288	5_2:-27484532	Msa0766080:exon
AACCAAATCCAACCAACACA+GGG	0.630763	5_2:-27484472	Msa0766080:CDS
AACCCTGTGTTGGTTGGATT+TGG	0.331681	5_2:+27484470	None:intergenic
AAGCACGGTTCACAGTCCTG+CGG	0.716531	5_2:+27482623	None:intergenic
AATTAAAGGTACTACTGGTA+AGG	0.548654	5_2:+27482165	None:intergenic
AATTCAAAACTGTATCACAA+TGG	0.638663	5_2:+27482220	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATGATAACCTAGATCTAA+CGG	+	chr5_2:27481969-27481988	None:intergenic	30.0%
ATGTTGTGATTTATGGTAAC+TGG	-	chr5_2:27482499-27482518	Msa0766080:intron	30.0%
GATACAGTTCATGACAATTT+AGG	-	chr5_2:27482689-27482708	Msa0766080:intron	30.0%
TTTATAATCCGAACTGCATA+GGG	+	chr5_2:27483025-27483044	None:intergenic	30.0%
TTCGGATTATAAAATCCGAA+CGG	-	chr5_2:27483032-27483051	Msa0766080:intron	30.0%
TGAGCAATTGATATTTACCA+AGG	+	chr5_2:27483195-27483214	None:intergenic	30.0%
TGGTAAATATCAATTGCTCA+TGG	-	chr5_2:27483195-27483214	Msa0766080:intron	30.0%
TGATTAAAAATGCCAAGGTT+GGG	+	chr5_2:27483360-27483379	None:intergenic	30.0%
TTGATTAAAAATGCCAAGGT+TGG	+	chr5_2:27483361-27483380	None:intergenic	30.0%
TTGCAAGCTCAAATAATCAT+AGG	+	chr5_2:27483882-27483901	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	27481961	27484660	27481961	ID=Msa0766080;Name=Msa0766080
chr5_2	mRNA	27481961	27484660	27481961	ID=Msa0766080-mRNA-1;Parent=Msa0766080;Name=Msa0766080-mRNA-1;_AED=0.06;_eAED=0.06;_QI=125\|1\|1\|1\|0.75\|0.6\|5\|368\|120
chr5_2	exon	27481961	27482024	27481961	ID=Msa0766080-mRNA-1:exon:10749;Parent=Msa0766080-mRNA-1
chr5_2	exon	27482090	27482487	27482090	ID=Msa0766080-mRNA-1:exon:10748;Parent=Msa0766080-mRNA-1
chr5_2	exon	27482586	27482695	27482586	ID=Msa0766080-mRNA-1:exon:10747;Parent=Msa0766080-mRNA-1
chr5_2	exon	27484285	27484364	27484285	ID=Msa0766080-mRNA-1:exon:10746;Parent=Msa0766080-mRNA-1
chr5_2	exon	27484457	27484660	27484457	ID=Msa0766080-mRNA-1:exon:10745;Parent=Msa0766080-mRNA-1
chr5_2	five_prime_UTR	27484536	27484660	27484536	ID=Msa0766080-mRNA-1:five_prime_utr;Parent=Msa0766080-mRNA-1
chr5_2	CDS	27484457	27484535	27484457	ID=Msa0766080-mRNA-1:cds;Parent=Msa0766080-mRNA-1
chr5_2	CDS	27484285	27484364	27484285	ID=Msa0766080-mRNA-1:cds;Parent=Msa0766080-mRNA-1
chr5_2	CDS	27482586	27482695	27482586	ID=Msa0766080-mRNA-1:cds;Parent=Msa0766080-mRNA-1
chr5_2	CDS	27482394	27482487	27482394	ID=Msa0766080-mRNA-1:cds;Parent=Msa0766080-mRNA-1
chr5_2	three_prime_UTR	27482090	27482393	27482090	ID=Msa0766080-mRNA-1:three_prime_utr;Parent=Msa0766080-mRNA-1
chr5_2	three_prime_UTR	27481961	27482024	27481961	ID=Msa0766080-mRNA-1:three_prime_utr;Parent=Msa0766080-mRNA-1

Gene Sequence	>Msa0766080 ATGGTGCAACGTCTCACCTATCGCCGTCGTCACAGCTACGCAACCAAATCCAACCAACACAGGGTTGTCAAAACCCCTGGTGGTAAGCTTGTTTATCAGACTACTAAGAAGAGAGCTAGTGGACCTAAGTGTCCTGTTACTGGCAAGAGAATTCAAGGAATTCCACACTTGAGGCCTGCAGAGTACAAGAGATCAAGGCTGCCTAGAAACCGCAGGACTGTGAACCGTGCTTATGGTGGGGTTTTGTCTGGAGGTGCTGTCCGGGAAAGGATCATTAGGGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCCTCAAAATTCAGAAGGCAAAGGAAAAGGTTTCCTCCAAGGCATAA
Protein sequence	>Msa0766080 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLPRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKVSSKA*