AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0374310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374310 MtrunA17_Chr3g0124841 82.581 930 70 14 1 861 1 907 0.0 1253
Msa0374310 MtrunA17_Chr5g0448571 33.259 448 211 7 448 850 352 756 2.11e-65 233
Msa0374310 MtrunA17_Chr5g0448571 54.237 59 27 0 1 59 1 59 4.24e-13 73.2
Msa0374310 MtrunA17_Chr3g0130761 29.106 615 287 13 303 860 259 781 5.50e-61 221
Msa0374310 MtrunA17_Chr3g0143731 29.659 381 204 5 484 856 358 682 1.56e-44 171
Msa0374310 MtrunA17_Chr4g0072011 27.003 574 297 13 237 739 140 662 9.23e-40 157
Msa0374310 MtrunA17_Chr4g0052471 79.775 89 15 1 497 585 110 195 3.48e-38 141
Msa0374310 MtrunA17_Chr4g0052471 90.909 44 4 0 451 494 5 48 1.25e-19 87.8
Msa0374310 MtrunA17_Chr1g0211271 27.298 359 225 6 504 853 388 719 6.85e-36 145
Msa0374310 MtrunA17_Chr7g0250681 24.891 458 263 10 450 853 405 835 4.86e-32 134
Msa0374310 MtrunA17_Chr2g0298171 33.065 248 137 5 500 736 639 868 2.82e-30 129
Msa0374310 MtrunA17_Chr5g0405741 24.370 357 235 6 500 853 307 631 2.85e-30 127
Msa0374310 MtrunA17_Chr8g0335341 23.689 553 311 12 367 853 208 715 2.95e-29 124
Msa0374310 MtrunA17_Chr3g0118401 28.185 259 167 4 492 749 452 692 3.20e-29 125
Msa0374310 MtrunA17_Chr3g0118401 45.946 74 34 1 1 68 1 74 1.71e-11 68.2
Msa0374310 MtrunA17_Chr5g0440551 28.163 245 152 4 500 740 443 667 1.14e-27 120
Msa0374310 MtrunA17_Chr5g0440551 44.872 78 39 1 1 74 1 78 7.16e-12 69.3
Msa0374310 MtrunA17_Chr3g0139411 22.590 363 257 5 492 854 363 701 5.98e-22 101
Msa0374310 MtrunA17_Chr8g0382541 35.359 181 93 6 566 743 1 160 2.12e-20 91.3
Msa0374310 MtrunA17_Chr2g0331821 21.585 366 258 7 492 853 408 748 2.32e-19 93.6
Msa0374310 MtrunA17_Chr2g0303521 26.703 367 211 14 505 858 313 634 3.04e-18 89.7
Msa0374310 MtrunA17_Chr8g0382551 41.975 81 42 1 1 76 1 81 1.50e-12 70.9
Msa0374310 MtrunA17_Chr4g0004471 20.912 373 250 9 492 855 212 548 5.56e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374310 AT1G21740.1 46.389 983 361 29 1 856 1 944 0.0 678
Msa0374310 AT1G77500.1 45.568 959 343 21 1 861 1 878 0.0 622
Msa0374310 AT4G35240.4 31.818 924 462 23 1 853 1 827 1.04e-93 313
Msa0374310 AT4G35240.3 31.818 924 462 23 1 853 1 827 1.04e-93 313
Msa0374310 AT4G35240.2 31.818 924 462 23 1 853 1 827 1.15e-93 314
Msa0374310 AT4G35240.1 31.818 924 462 23 1 853 1 827 1.15e-93 314
Msa0374310 AT2G17110.1 35.043 351 176 4 500 850 414 712 4.07e-55 204
Msa0374310 AT2G17110.1 54.545 55 25 0 1 55 1 55 1.20e-11 68.9
Msa0374310 AT5G54480.1 28.169 355 204 5 500 853 411 715 4.21e-39 155
Msa0374310 AT3G51290.3 25.143 350 228 4 504 853 306 621 3.11e-32 134
Msa0374310 AT3G51290.2 25.706 354 229 5 500 853 302 621 4.62e-32 134
Msa0374310 AT1G02110.1 24.439 446 257 10 450 844 270 686 3.02e-30 128
Msa0374310 AT1G20530.1 28.771 358 183 9 451 763 232 562 4.95e-29 124
Msa0374310 AT3G51290.1 24.286 350 225 4 504 853 306 615 6.66e-29 123
Msa0374310 AT4G39790.1 29.536 237 151 1 500 736 386 606 1.37e-28 122
Msa0374310 AT2G27090.2 27.823 248 160 3 500 746 439 668 5.69e-28 121
Msa0374310 AT2G27090.2 45.946 74 34 1 1 68 1 74 1.56e-11 68.6
Msa0374310 AT2G27090.1 27.823 248 160 3 500 746 439 668 5.69e-28 121
Msa0374310 AT2G27090.1 45.946 74 34 1 1 68 1 74 1.56e-11 68.6
Msa0374310 AT4G30130.3 27.158 556 305 18 237 739 133 641 6.82e-28 120
Msa0374310 AT4G30130.1 27.158 556 305 18 237 739 133 641 6.82e-28 120
Msa0374310 AT3G60320.1 23.566 488 288 12 422 853 330 788 9.39e-28 120
Msa0374310 AT2G19090.1 29.323 266 143 5 492 739 486 724 4.05e-25 112
Msa0374310 AT5G25590.1 22.222 459 275 9 451 855 330 760 1.95e-21 100
Msa0374310 AT1G52320.1 21.813 353 244 8 492 839 414 739 3.82e-17 87.0
Msa0374310 AT2G34670.2 22.905 358 231 8 505 853 353 674 4.44e-17 86.7
Msa0374310 AT1G52320.2 21.813 353 244 8 492 839 437 762 7.39e-17 85.9
Msa0374310 AT1G52320.5 21.813 353 244 8 492 839 437 762 7.39e-17 85.9
Msa0374310 AT1G52320.3 21.813 353 244 8 492 839 111 436 3.08e-15 79.7
Msa0374310 AT1G52320.4 21.813 353 244 8 492 839 111 436 3.08e-15 79.7
Msa0374310 AT4G30130.4 28.792 389 219 13 237 588 133 500 1.09e-11 68.9
Msa0374310 AT4G30130.2 28.792 389 219 13 237 588 133 500 1.09e-11 68.9

Find 279 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAGCCTGGAACTGTTTC+TGG 0.194296 3_1:-73734332 None:intergenic
AAACTCACCCCTTTCTTTCT+AGG 0.194413 3_1:-73732092 None:intergenic
CACGAGCATGACAAAGTTTC+AGG 0.222711 3_1:+73734810 Msa0374310:CDS
TCTCATTTGAATCTTTCTTC+TGG 0.225408 3_1:+73731183 Msa0374310:CDS
CAGCTTGCAGCATTAATTAA+TGG 0.228181 3_1:+73733637 Msa0374310:CDS
GGTTCTCCTTATGGTGGTTA+TGG 0.230280 3_1:+73731534 Msa0374310:CDS
GACTGTAGATTGGGTGTTAC+AGG 0.233168 3_1:-73735259 None:intergenic
TGATTCCAATCTTGTTGATA+TGG 0.253430 3_1:-73731396 None:intergenic
GTTGACAATAATAATTATTC+TGG 0.253727 3_1:+73731699 Msa0374310:CDS
ATTAACTCTAGCTGCAAAAT+TGG 0.254729 3_1:-73735119 None:intergenic
GAAGAGGTTGTGTTTGTTAC+TGG 0.258512 3_1:-73730670 None:intergenic
AATAATAATTATTCTGGTTA+TGG 0.263471 3_1:+73731705 Msa0374310:CDS
TCAAGACTTGCTGCATTTAG+AGG 0.270388 3_1:+73732323 Msa0374310:CDS
GGGATCTAAAAGAGGTTGTT+AGG 0.275615 3_1:+73732216 Msa0374310:CDS
CAATCTTGTTGATATGGATA+TGG 0.277701 3_1:-73731390 None:intergenic
CTCCCTTTCAAGTTCTATAA+TGG 0.279518 3_1:-73734418 None:intergenic
ACTATGAAACCGCACCGTTT+TGG 0.283793 3_1:-73731994 None:intergenic
TCCGTCTCATCTTCTAATTC+AGG 0.285195 3_1:-73731807 None:intergenic
GTGGAATAATAATACTAAAA+TGG 0.291431 3_1:-73730738 None:intergenic
AAAAGTGTTGAAACTATATC+AGG 0.292364 3_1:+73733577 Msa0374310:CDS
GGTTATGGAAGTTATGGATT+AGG 0.294831 3_1:+73731720 Msa0374310:CDS
GGAGCCGGAGCCGGCGGAGG+CGG 0.296226 3_1:-73731624 None:intergenic
TCTTGTTCTTGTTCTCGTTC+AGG 0.303268 3_1:-73731285 None:intergenic
CCTAATGGCTTCCTTATGTT+TGG 0.304816 3_1:-73734937 None:intergenic
TATTCTGGTTATGGAAGTTA+TGG 0.304828 3_1:+73731714 Msa0374310:CDS
GGAGTATATAGTTAGGAAAT+TGG 0.312716 3_1:-73730361 None:intergenic
TTTCTAGGAGGAGATCCTTT+AGG 0.318934 3_1:-73732077 None:intergenic
GTTATGGAAGTTATGGATTA+GGG 0.320121 3_1:+73731721 Msa0374310:CDS
AGGAACAAAGGCGGAAAATC+AGG 0.327990 3_1:+73734718 Msa0374310:CDS
GGAAGTTATGGATTAGGGTT+AGG 0.329740 3_1:+73731726 Msa0374310:CDS
GTTCTCCTTATGGTGGTTAT+GGG 0.330786 3_1:+73731535 Msa0374310:CDS
TTTGCATTTGCATTTGCATT+TGG 0.331122 3_1:-73730303 None:intergenic
CAATGGACTGGTTCTCCTTA+TGG 0.331408 3_1:+73731525 Msa0374310:CDS
ACACCATCATCTGTTTCTTC+AGG 0.331566 3_1:-73734540 None:intergenic
TAGAGCTTTGCGCACCGAAA+TGG 0.331955 3_1:+73734776 Msa0374310:CDS
CCTTTAGGAACAACATTATC+AGG 0.332468 3_1:-73732062 None:intergenic
GAGAGACACGTGGCGGAATC+TGG 0.345695 3_1:+73731501 Msa0374310:CDS
TGCGCCGCCTCCGCCGGCTC+CGG 0.347174 3_1:+73731620 Msa0374310:CDS
TGTTGATATGGATATGGATA+TGG 0.347686 3_1:-73731384 None:intergenic
AGCTTGCAGCATTAATTAAT+GGG 0.348005 3_1:+73733638 Msa0374310:CDS
GTTGTTAAGGGTGGAGATTT+TGG 0.350423 3_1:+73731909 Msa0374310:CDS
GAAGAAAGTGGCAGAGGAAG+TGG 0.352265 3_1:+73731869 Msa0374310:CDS
AGTTTCAGCAACTAAAGCTT+TGG 0.356209 3_1:+73735197 Msa0374310:three_prime_UTR
AGAAAAGGAAGAGGTTGTTA+AGG 0.362522 3_1:+73731896 Msa0374310:CDS
CAAGAAAGAGGATTTGAATA+TGG 0.364165 3_1:+73731303 Msa0374310:CDS
GCAGTTGCAGTTTGATTTGA+AGG 0.368463 3_1:+73732562 Msa0374310:CDS
GGAGCCGGCGGAGGCGGCGC+AGG 0.371955 3_1:-73731618 None:intergenic
TTCATTTATTTATTGATTGT+AGG 0.380009 3_1:+73735305 Msa0374310:three_prime_UTR
TACGCCTGCGCCGCCTCCGC+CGG 0.382792 3_1:+73731614 Msa0374310:CDS
AGATGGATCGTGGATCGATT+TGG 0.383055 3_1:-73730575 None:intergenic
TATGGTGGTTATGGGTATAA+TGG 0.383537 3_1:+73731543 Msa0374310:CDS
CACCACCGAGAGTTTCTACT+TGG 0.383628 3_1:+73731652 Msa0374310:CDS
CCGAACCATCTTCTTCTTAC+GGG 0.385216 3_1:+73731352 Msa0374310:CDS
CACGGGGAACTCCTCCAGTT+TGG 0.386880 3_1:-73730884 None:intergenic
TGAGATTTAGATTTAAGAAA+AGG 0.388460 3_1:-73730465 None:intergenic
TTCTTGTTCTCGTTCAGGTT+CGG 0.391928 3_1:-73731280 None:intergenic
GGAACTGTTTCTGGTGGCAT+TGG 0.392548 3_1:-73734323 None:intergenic
GGAGGCGGCGCAGGCGTAGA+AGG 0.400533 3_1:-73731609 None:intergenic
CGGATTCAGCCTCGGGTGTT+CGG 0.402108 3_1:-73731260 None:intergenic
CCCGTAAGAAGAAGATGGTT+CGG 0.403321 3_1:-73731352 None:intergenic
CCCGAACCATCTTCTTCTTA+CGG 0.406997 3_1:+73731351 Msa0374310:CDS
GGTGGAGCCGGAGCCGGCGG+AGG 0.407665 3_1:-73731627 None:intergenic
CTTTCATTATCTGCAATGAT+TGG 0.408806 3_1:+73734601 Msa0374310:CDS
GGCATAGAGATTGGTGATGT+TGG 0.409760 3_1:-73730406 None:intergenic
CGAGAAGGCAATGTGAGAAC+AGG 0.414014 3_1:-73731093 None:intergenic
CATATCCATATCAACAAGAT+TGG 0.414946 3_1:+73731391 Msa0374310:CDS
TAATAGTTTACAAACTGGTT+TGG 0.416201 3_1:+73734980 Msa0374310:CDS
CCAATCCGACTTGGAGAGTA+AGG 0.417005 3_1:-73734567 None:intergenic
CTTTGTCTCCACATGGAACT+AGG 0.419464 3_1:+73732195 Msa0374310:CDS
ATGCCACCAGAAACAGTTCC+AGG 0.420200 3_1:+73734326 Msa0374310:CDS
GTTTCAGCAACTAAAGCTTT+GGG 0.420405 3_1:+73735198 Msa0374310:three_prime_UTR
TTGAAAGGGAGCTTCTGAAT+TGG 0.420884 3_1:+73734430 Msa0374310:CDS
TTCAGGTTCGGATTCAGCCT+CGG 0.423908 3_1:-73731268 None:intergenic
TGTTGTTGGAGTATATAGTT+AGG 0.424558 3_1:-73730368 None:intergenic
AAGAAGTGAGGGAGAGAGAA+GGG 0.424841 3_1:+73731781 Msa0374310:CDS
GGTGAAGGTGGAGCCGGAGC+CGG 0.424911 3_1:-73731633 None:intergenic
AGATTCCGCCACGTGTCTCT+CGG 0.425616 3_1:-73731499 None:intergenic
ATGAATAGAATTTCAGAAAG+AGG 0.426192 3_1:+73734633 Msa0374310:CDS
TATGGGTATAATGGTATGAA+TGG 0.427326 3_1:+73731552 Msa0374310:CDS
GGTGCACACAGTTCAACAAT+TGG 0.428625 3_1:+73734451 Msa0374310:CDS
GAAGTTATGGATTAGGGTTA+GGG 0.428805 3_1:+73731727 Msa0374310:CDS
CTCTGAAGTGAAACTTTCTA+AGG 0.429224 3_1:-73735018 None:intergenic
TCTTATGTTGAAAATTTGAA+TGG 0.431188 3_1:+73734489 Msa0374310:CDS
AGAGCTTTGCGCACCGAAAT+GGG 0.431764 3_1:+73734777 Msa0374310:CDS
TTTGAGACTGCTTCTAATCA+TGG 0.432301 3_1:+73732254 Msa0374310:CDS
TCGGGTTGGTGTTCGTATTG+AGG 0.433025 3_1:-73731333 None:intergenic
GAAGGAAGTGCCATTGCAAC+AGG 0.435586 3_1:+73731950 Msa0374310:CDS
GATCTGTAAATTGTTGTTGT+TGG 0.437109 3_1:-73730382 None:intergenic
CTCAAAAGCTGCATGAGCTA+TGG 0.438860 3_1:+73734682 Msa0374310:CDS
AGCATAATGAAGGAAAGAAA+TGG 0.441070 3_1:-73730796 None:intergenic
TCGAAGTTCAATTCTGATAG+TGG 0.442059 3_1:+73734846 Msa0374310:CDS
AAGAGGTTGTGTTTGTTACT+GGG 0.442183 3_1:-73730669 None:intergenic
AAGAGGGGTGGCAGATGCTA+TGG 0.442230 3_1:+73734650 Msa0374310:CDS
TTTGCAGCTAGAGTTAATCT+TGG 0.445326 3_1:+73735124 Msa0374310:three_prime_UTR
GAAGAAGAAGAAAGTGGCAG+AGG 0.447265 3_1:+73731863 Msa0374310:CDS
TGTAAATTAACATGGGCTGC+GGG 0.449614 3_1:+73730857 Msa0374310:exon
GCATAGAGATTGGTGATGTT+GGG 0.455238 3_1:-73730405 None:intergenic
TTTGTGGTGTTGTTGAGAAA+TGG 0.457183 3_1:-73730820 None:intergenic
TTTGAATCTTTCTTCTGGAT+CGG 0.458184 3_1:+73731188 Msa0374310:CDS
TCAGGTTCGGATTCAGCCTC+GGG 0.458879 3_1:-73731267 None:intergenic
GGATCTCCTCCTAGAAAGAA+AGG 0.460253 3_1:+73732083 Msa0374310:CDS
CTCGGTGGTGAAGGTGGAGC+CGG 0.465082 3_1:-73731639 None:intergenic
CCGTAAGAAGAAGATGGTTC+GGG 0.466321 3_1:-73731351 None:intergenic
CCTGATAATGTTGTTCCTAA+AGG 0.466850 3_1:+73732062 Msa0374310:CDS
ATTAGAAGATGAGACGGAAC+AGG 0.466915 3_1:+73731812 Msa0374310:CDS
ACTGGTTTGCAAAGAGATGA+AGG 0.467754 3_1:+73734387 Msa0374310:CDS
GAAAAGGAAGAGGTTGTTAA+GGG 0.470149 3_1:+73731897 Msa0374310:CDS
GCTTCTAATAGTTTACAAAC+TGG 0.474058 3_1:+73734975 Msa0374310:CDS
TGATAGTGGTGTTTCGCCAC+TGG 0.474624 3_1:+73734860 Msa0374310:CDS
AGGGAAAATGGCATAGAGAT+TGG 0.481322 3_1:-73730415 None:intergenic
TGATGAGAGGGCCAAACATA+AGG 0.481807 3_1:+73734926 Msa0374310:CDS
TAGAGTTAATCTTGGTATGT+AGG 0.481953 3_1:+73735132 Msa0374310:three_prime_UTR
AAAGAAGTGAGGGAGAGAGA+AGG 0.482867 3_1:+73731780 Msa0374310:CDS
AAGCCATTATAGAACTTGAA+AGG 0.483499 3_1:+73734415 Msa0374310:CDS
CGACAAATTGTAAATTAACA+TGG 0.483870 3_1:+73730849 Msa0374310:exon
TGCATCACGGACAAGCCTAA+TGG 0.484621 3_1:-73734952 None:intergenic
GAGTGAAATCTGACCGTTGA+TGG 0.485438 3_1:-73730606 None:intergenic
TTTCTTCAGGTTCATCAAGA+AGG 0.487287 3_1:-73734527 None:intergenic
AACTCTAGCTGCAAAATTGG+TGG 0.487478 3_1:-73735116 None:intergenic
CAGTTCAGTGAGGGTAATAG+TGG 0.499151 3_1:-73730757 None:intergenic
TACTAAAATGGAAGCAGCAT+GGG 0.501036 3_1:-73730726 None:intergenic
TGAATAGAATTTCAGAAAGA+GGG 0.501325 3_1:+73734634 Msa0374310:CDS
AAGGAAGAGGTTGTTAAGGG+TGG 0.503136 3_1:+73731900 Msa0374310:CDS
GGTATGAATGGAGGTAATAG+TGG 0.503648 3_1:+73731564 Msa0374310:CDS
ATTTGAATGGGTGGCTCAGA+AGG 0.504891 3_1:+73734502 Msa0374310:CDS
TCAAAAGCTGCATGAGCTAT+GGG 0.507138 3_1:+73734683 Msa0374310:CDS
GAAGAAATTGAAGAAGAAGA+AGG 0.507803 3_1:-73731069 None:intergenic
AGAGGAAGTGGAGAAAGAAA+AGG 0.507961 3_1:+73731881 Msa0374310:CDS
TGCGGAGCTCCAATCCGACT+TGG 0.511426 3_1:-73734576 None:intergenic
GCTTTGGGTGTGTAAACGTC+AGG 0.511721 3_1:+73735213 Msa0374310:three_prime_UTR
GGAAAGAAATGGAAGAAAGA+TGG 0.512909 3_1:-73730785 None:intergenic
AGTGGAGAAAGAAAAGGAAG+AGG 0.513148 3_1:+73731887 Msa0374310:CDS
CCTTACTCTCCAAGTCGGAT+TGG 0.513152 3_1:+73734567 Msa0374310:CDS
GATCTCCTCCTAGAAAGAAA+GGG 0.513989 3_1:+73732084 Msa0374310:CDS
GTGCACACAGTTCAACAATT+GGG 0.515126 3_1:+73734452 Msa0374310:CDS
GAAACAGTTCCAGGCTATCA+TGG 0.515239 3_1:+73734335 Msa0374310:CDS
AGCCATTATAGAACTTGAAA+GGG 0.515704 3_1:+73734416 Msa0374310:CDS
CTTAGAAAGTTTCACTTCAG+AGG 0.516214 3_1:+73735019 Msa0374310:CDS
CCAAACATAAGGAAGCCATT+AGG 0.516949 3_1:+73734937 Msa0374310:CDS
GTGAAAATTAGTGAAGGAAA+AGG 0.518538 3_1:-73730633 None:intergenic
GATTCCGCCACGTGTCTCTC+GGG 0.519830 3_1:-73731498 None:intergenic
CACAGTTCAACAATTGGGTC+AGG 0.519909 3_1:+73734457 Msa0374310:CDS
GGATCTAAAAGAGGTTGTTA+GGG 0.519957 3_1:+73732217 Msa0374310:CDS
GGCGAGAGCGTAACGTTGAT+CGG 0.521112 3_1:-73730950 None:intergenic
CTACTACTCACCTGTTGCAA+TGG 0.521870 3_1:-73731960 None:intergenic
CTCACATTGCCTTCTCGTGA+AGG 0.524220 3_1:+73731099 Msa0374310:CDS
GAAGGTGGAGCCGGAGCCGG+CGG 0.524547 3_1:-73731630 None:intergenic
CTTATGTTGAAAATTTGAAT+GGG 0.525221 3_1:+73734490 Msa0374310:CDS
ATGCAAGAGATTGAAAGCAT+TGG 0.527869 3_1:+73733471 Msa0374310:CDS
CGAGAACAAGAACAAGAAAG+AGG 0.531310 3_1:+73731291 Msa0374310:CDS
TTGTAAATTAACATGGGCTG+CGG 0.536115 3_1:+73730856 Msa0374310:exon
GTTACAACAGTAGAGGTTGA+TGG 0.539166 3_1:+73732143 Msa0374310:CDS
TTCGCCACTGGATGATCTAA+AGG 0.539779 3_1:+73734872 Msa0374310:CDS
TCGTGGATCGATTTGGAAGG+AGG 0.540605 3_1:-73730568 None:intergenic
GTAGAAACTCTCGGTGGTGA+AGG 0.541943 3_1:-73731648 None:intergenic
GAGAAATGGAAGCATAATGA+AGG 0.542341 3_1:-73730806 None:intergenic
CTCACCCCTTTCTTTCTAGG+AGG 0.547699 3_1:-73732089 None:intergenic
CTGCAGCCTCGTAGAGAACA+TGG 0.549697 3_1:+73735078 Msa0374310:exon
GCAGCAAGTCTTGACTGATA+AGG 0.550165 3_1:-73732314 None:intergenic
TGTACTCTGAACTCAATCCT+TGG 0.551084 3_1:+73730515 Msa0374310:five_prime_UTR
CCTCTTAAAACTCTCTGAAG+AGG 0.552545 3_1:+73735161 Msa0374310:three_prime_UTR
GAGGATTTACCTTCACGAGA+AGG 0.553408 3_1:-73731108 None:intergenic
TTTGTCTCCACATGGAACTA+GGG 0.554562 3_1:+73732196 Msa0374310:CDS
ACGAGCATGACAAAGTTTCA+GGG 0.557309 3_1:+73734811 Msa0374310:CDS
TCCTGAATTAGAAGATGAGA+CGG 0.558744 3_1:+73731806 Msa0374310:CDS
GGTTGTGTTTGTTACTGGGA+GGG 0.559165 3_1:-73730665 None:intergenic
CAATCTCTCAAATTAAACAC+TGG 0.563399 3_1:+73734369 Msa0374310:CDS
TTAATTAATGCTGCAAGCTG+AGG 0.567648 3_1:-73733634 None:intergenic
GAAGAAATTGCATGATGAGA+GGG 0.568060 3_1:+73734914 Msa0374310:CDS
TCCTGATTCAAAAGAAGTGA+GGG 0.568796 3_1:+73731770 Msa0374310:CDS
GAAACTCTCGGTGGTGAAGG+TGG 0.570393 3_1:-73731645 None:intergenic
CAACAGGTGAGTAGTAGTGA+GGG 0.571312 3_1:+73731966 Msa0374310:CDS
GAAGAAGGAGTAGAACCAGT+TGG 0.571423 3_1:-73731054 None:intergenic
TTATACCCATAACCACCATA+AGG 0.575087 3_1:-73731540 None:intergenic
GGTGTGTAAACGTCAGGACA+TGG 0.578226 3_1:+73735219 Msa0374310:three_prime_UTR
AGAGGGGTGGCAGATGCTAT+GGG 0.579128 3_1:+73734651 Msa0374310:CDS
GCGGAATCTGGACAATGGAC+TGG 0.581256 3_1:+73731513 Msa0374310:CDS
GGGTTAGGGTTAGCGTCGAG+TGG 0.581567 3_1:+73731741 Msa0374310:CDS
TGTTAATTTACAATTTGTCG+TGG 0.581922 3_1:-73730846 None:intergenic
CGTTGATGGGTGAATAGAGA+TGG 0.582930 3_1:-73730592 None:intergenic
TTATACCCGTAAGAAGAAGA+TGG 0.583571 3_1:-73731357 None:intergenic
TAAATTAACATGGGCTGCGG+GGG 0.584717 3_1:+73730859 Msa0374310:exon
ACTCAAGATCATGATCATCA+TGG 0.585920 3_1:-73731149 None:intergenic
CGTGGATCGATTTGGAAGGA+GGG 0.587926 3_1:-73730567 None:intergenic
GTAACACCCAATCTACAGTC+AGG 0.590215 3_1:+73735262 Msa0374310:three_prime_UTR
AGAGGTTGCATTTCTTCTCG+AGG 0.590287 3_1:+73732280 Msa0374310:CDS
TGGAACTAGGGATCTAAAAG+AGG 0.591949 3_1:+73732208 Msa0374310:CDS
GGGTATAATGGTATGAATGG+AGG 0.592051 3_1:+73731555 Msa0374310:CDS
GACAAATTGTAAATTAACAT+GGG 0.594367 3_1:+73730850 Msa0374310:exon
GTCCTGATTCAAAAGAAGTG+AGG 0.595426 3_1:+73731769 Msa0374310:CDS
TGCTTCTAATCATGGAAGAG+AGG 0.596147 3_1:+73732262 Msa0374310:CDS
TTCTCTGCAAAGAGTTACCA+CGG 0.598360 3_1:-73730902 None:intergenic
GTAAATTAACATGGGCTGCG+GGG 0.598567 3_1:+73730858 Msa0374310:exon
TGAAGGTACTTCGAATTCGA+AGG 0.599893 3_1:+73731932 Msa0374310:CDS
TTTCATAGTAGCGAAGGTAG+TGG 0.601039 3_1:+73732008 Msa0374310:CDS
GCAAGTCTTGACTGATAAGG+TGG 0.601503 3_1:-73732311 None:intergenic
AGAAAGTTTCACTTCAGAGG+TGG 0.603559 3_1:+73735022 Msa0374310:CDS
GGAACAAAGGCGGAAAATCA+GGG 0.603888 3_1:+73734719 Msa0374310:CDS
ATGTTGAAAATTTGAATGGG+TGG 0.604696 3_1:+73734493 Msa0374310:CDS
AAAGTGTTGAAACTATATCA+GGG 0.605560 3_1:+73733578 Msa0374310:CDS
TGTGAAGGAGGTTCGTCATG+AGG 0.607752 3_1:+73731839 Msa0374310:CDS
GTATATAGTTAGGAAATTGG+TGG 0.607953 3_1:-73730358 None:intergenic
TTGCCCCTTACTCTCCAAGT+CGG 0.608240 3_1:+73734562 Msa0374310:CDS
TAAGCATAACTATTAACCCC+TGG 0.609549 3_1:-73731426 None:intergenic
GGTTAGGGTTAGCGTCGAGT+GGG 0.610372 3_1:+73731742 Msa0374310:CDS
TGAGGAGAAGAAGAAGAAAG+TGG 0.610426 3_1:+73731857 Msa0374310:CDS
TTACAGTCTCTCAGAGACAT+CGG 0.611826 3_1:+73730991 Msa0374310:CDS
TCAGCAGATTGATAAGAATG+TGG 0.613642 3_1:+73734289 Msa0374310:intron
GTGCGGTTTCATAGTAGCGA+AGG 0.615348 3_1:+73732002 Msa0374310:CDS
GATTGGAATCAAAATCAACC+AGG 0.615492 3_1:+73731408 Msa0374310:CDS
AAATCCCAAGTAGAAACTCT+CGG 0.615723 3_1:-73731657 None:intergenic
AGGGAGGATACATAAACTGA+GGG 0.617129 3_1:+73733597 Msa0374310:CDS
AGAGGTGGTGAAAGCTCATG+AGG 0.617745 3_1:+73735037 Msa0374310:CDS
AGGTTGTGTTTGTTACTGGG+AGG 0.618221 3_1:-73730666 None:intergenic
GCCACTGGATGATCTAAAGG+TGG 0.618305 3_1:+73734875 Msa0374310:CDS
AGAAGAAATTGCATGATGAG+AGG 0.619702 3_1:+73734913 Msa0374310:CDS
ATACTAAAATGGAAGCAGCA+TGG 0.620596 3_1:-73730727 None:intergenic
AATCCGACTTGGAGAGTAAG+GGG 0.620758 3_1:-73734565 None:intergenic
TGGATCGATTTGGAAGGAGG+GGG 0.621361 3_1:-73730565 None:intergenic
CAATCCGACTTGGAGAGTAA+GGG 0.621439 3_1:-73734566 None:intergenic
TGAGGGTGATGAAGATGCGA+CGG 0.622626 3_1:+73732121 Msa0374310:CDS
TAGTGAGGGAAGTTCCAAAA+CGG 0.622761 3_1:+73731980 Msa0374310:CDS
AACTATTAGAAGCTGCATCA+CGG 0.624613 3_1:-73734965 None:intergenic
GAGAAGGCAATGTGAGAACA+GGG 0.624709 3_1:-73731092 None:intergenic
GGATCGTGGATCGATTTGGA+AGG 0.627929 3_1:-73730571 None:intergenic
TTTAGATCCCTAGTTCCATG+TGG 0.631482 3_1:-73732203 None:intergenic
TCTCTGCAAAGAGTTACCAC+GGG 0.632381 3_1:-73730901 None:intergenic
TGGACTGGTTCTCCTTATGG+TGG 0.633553 3_1:+73731528 Msa0374310:CDS
CATCTCTATTCACCCATCAA+CGG 0.634085 3_1:+73730593 Msa0374310:five_prime_UTR
ATCTCCTCCTAGAAAGAAAG+GGG 0.635205 3_1:+73732085 Msa0374310:CDS
ACCACCGAGAGTTTCTACTT+GGG 0.635604 3_1:+73731653 Msa0374310:CDS
GCAACAGGTGAGTAGTAGTG+AGG 0.636074 3_1:+73731965 Msa0374310:CDS
AACAAGATGAGGAACAAAGG+CGG 0.639484 3_1:+73734709 Msa0374310:CDS
TGATGAACATGATCTGAAGA+AGG 0.639709 3_1:-73731222 None:intergenic
AGTGAAATCTGACCGTTGAT+GGG 0.640019 3_1:-73730605 None:intergenic
GACGGAACAGGAAACTGTGA+AGG 0.640183 3_1:+73731824 Msa0374310:CDS
GAATAGAATTTCAGAAAGAG+GGG 0.641585 3_1:+73734635 Msa0374310:CDS
TTGAAAGCATTGGATAATCG+AGG 0.645643 3_1:+73733481 Msa0374310:CDS
CAGGGAGGATACATAAACTG+AGG 0.649011 3_1:+73733596 Msa0374310:CDS
AATTATAACAGAAAGAGCCA+AGG 0.649146 3_1:-73730532 None:intergenic
ATGGCTGTTCAGTTCAGTGA+GGG 0.649245 3_1:-73730766 None:intergenic
ACGTGGCGGAATCTGGACAA+TGG 0.649398 3_1:+73731508 Msa0374310:CDS
AAGAAGAAGATGGTTCGGGT+TGG 0.651087 3_1:-73731347 None:intergenic
CATAGAGATTGGTGATGTTG+GGG 0.651776 3_1:-73730404 None:intergenic
GAACCTGAAGAAACAGATGA+TGG 0.653790 3_1:+73734537 Msa0374310:CDS
GTGGATCGATTTGGAAGGAG+GGG 0.658073 3_1:-73730566 None:intergenic
AGAAACAAGATGAGGAACAA+AGG 0.658720 3_1:+73734706 Msa0374310:CDS
AAACGCGTGAAAATTAGTGA+AGG 0.665024 3_1:-73730639 None:intergenic
ATTGGAATCAAAATCAACCA+GGG 0.671756 3_1:+73731409 Msa0374310:CDS
TAGAATTTCAGAAAGAGGGG+TGG 0.673438 3_1:+73734638 Msa0374310:CDS
GGAAGCAGCATGGGAAAATG+TGG 0.675096 3_1:-73730717 None:intergenic
GGAACAGGAAACTGTGAAGG+AGG 0.675573 3_1:+73731827 Msa0374310:CDS
TTGCAGATAATGAAAGCTTG+CGG 0.678429 3_1:-73734594 None:intergenic
ACATGAACACCGAACACCCG+AGG 0.679265 3_1:+73731251 Msa0374310:CDS
GAGACATCGGAGAAGCTCTG+AGG 0.681296 3_1:+73731004 Msa0374310:CDS
TTAAGCACTTTGTCTCCACA+TGG 0.682460 3_1:+73732188 Msa0374310:CDS
TAGCCTGGAACTGTTTCTGG+TGG 0.687495 3_1:-73734329 None:intergenic
TGCGACGGTTACAACAGTAG+AGG 0.688026 3_1:+73732136 Msa0374310:CDS
ACTGTTCTCAGGATGAAGAG+AGG 0.689314 3_1:+73733425 Msa0374310:intron
ATGAAGAAATCTGCACCACG+TGG 0.690953 3_1:+73731453 Msa0374310:CDS
CAGGGCAGAGTATCTCACAA+AGG 0.692112 3_1:+73734737 Msa0374310:CDS
CAAGATCATGATCATCATGG+TGG 0.695629 3_1:-73731146 None:intergenic
TTGGAATCAAAATCAACCAG+GGG 0.695794 3_1:+73731410 Msa0374310:CDS
GCTATGGGAGAAACAAGATG+AGG 0.701488 3_1:+73734698 Msa0374310:CDS
GCAGGCGTAGAAGGTCCCGC+CGG 0.701500 3_1:-73731600 None:intergenic
AGGGAAGTTCCAAAACGGTG+CGG 0.705993 3_1:+73731985 Msa0374310:CDS
TCAAGAACCCGAGAGACACG+TGG 0.707419 3_1:+73731491 Msa0374310:CDS
GGGTGAATAGAGATGGATCG+TGG 0.710207 3_1:-73730585 None:intergenic
TCCACCTTTAGATCATCCAG+TGG 0.717641 3_1:-73734876 None:intergenic
GATGGCTGTTCAGTTCAGTG+AGG 0.724026 3_1:-73730767 None:intergenic
AGAAGGCAATGTGAGAACAG+GGG 0.739205 3_1:-73731091 None:intergenic
CTCTGCAAAGAGTTACCACG+GGG 0.744877 3_1:-73730900 None:intergenic
TAAATAAGAGAGATGCGCGG+CGG 0.749568 3_1:-73730971 None:intergenic
AATCGTCCATGTTCTCTACG+AGG 0.757312 3_1:-73735084 None:intergenic
CTGTAAATAAGAGAGATGCG+CGG 0.766271 3_1:-73730974 None:intergenic
GTGTTGAAACTATATCAGGG+AGG 0.772755 3_1:+73733581 Msa0374310:CDS
CAAACTGGAGGAGTTCCCCG+TGG 0.774000 3_1:+73730885 Msa0374310:CDS
AGAACCCGAGAGACACGTGG+CGG 0.780648 3_1:+73731494 Msa0374310:CDS
TCCCAAGTAGAAACTCTCGG+TGG 0.798985 3_1:-73731654 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAGATTAAAAAAAGA+GGG - chr3_1:73730437-73730456 None:intergenic 10.0%
!! AATAATAAGATTAAAAAAAG+AGG - chr3_1:73730438-73730457 None:intergenic 10.0%
!! ATAAATTAGTAAATATTGTA+CGG + chr3_1:73733364-73733383 Msa0374310:intron 10.0%
!! TATTAATAATGAAGATTTAA+GGG - chr3_1:73734108-73734127 None:intergenic 10.0%
!! TTATTAATAATGAAGATTTA+AGG - chr3_1:73734109-73734128 None:intergenic 10.0%
!!! TTAATAATTATCATCATTTT+TGG + chr3_1:73734122-73734141 Msa0374310:intron 10.0%
!!! AATAATAATTATTCTGGTTA+TGG + chr3_1:73731705-73731724 Msa0374310:CDS 15.0%
!!! TTTGAAATTAGTTAAATGTT+AGG + chr3_1:73733075-73733094 Msa0374310:intron 15.0%
!! TGACATGATATTAAAAAAAA+TGG - chr3_1:73733737-73733756 None:intergenic 15.0%
!!! TTCATTTATTTATTGATTGT+AGG + chr3_1:73735305-73735324 Msa0374310:three_prime_UTR 15.0%
!! TGAGATTTAGATTTAAGAAA+AGG - chr3_1:73730468-73730487 None:intergenic 20.0%
!! GTGGAATAATAATACTAAAA+TGG - chr3_1:73730741-73730760 None:intergenic 20.0%
!! GACAAATTGTAAATTAACAT+GGG + chr3_1:73730850-73730869 Msa0374310:exon 20.0%
!! GTTGACAATAATAATTATTC+TGG + chr3_1:73731699-73731718 Msa0374310:CDS 20.0%
!!! TTTCCTTTTTAGTTCTTTTT+TGG + chr3_1:73732357-73732376 Msa0374310:intron 20.0%
!! AATCCAAAAAAGAACTAAAA+AGG - chr3_1:73732363-73732382 None:intergenic 20.0%
!!! TTTTAGTTCTTTTTTGGATT+TGG + chr3_1:73732363-73732382 Msa0374310:intron 20.0%
!! ATATATGTTGAACTTTATGT+GGG + chr3_1:73732621-73732640 Msa0374310:intron 20.0%
!! ATGTAAATATTACTGTTTAC+AGG + chr3_1:73732722-73732741 Msa0374310:intron 20.0%
!!! AAATTAGTTACTTTATGCAT+GGG + chr3_1:73733010-73733029 Msa0374310:intron 20.0%
!! AACAACATAAATGTATGAAA+GGG - chr3_1:73733233-73733252 None:intergenic 20.0%
!! AAACAACATAAATGTATGAA+AGG - chr3_1:73733234-73733253 None:intergenic 20.0%
!! ACAAATAAGAACAATTTGAA+AGG - chr3_1:73733392-73733411 None:intergenic 20.0%
!!! ATTATCATCATTTTTGGTTT+TGG + chr3_1:73734128-73734147 Msa0374310:intron 20.0%
!!! TTATCATCATTTTTGGTTTT+GGG + chr3_1:73734129-73734148 Msa0374310:intron 20.0%
!! TCTTATGTTGAAAATTTGAA+TGG + chr3_1:73734489-73734508 Msa0374310:CDS 20.0%
!! CTTATGTTGAAAATTTGAAT+GGG + chr3_1:73734490-73734509 Msa0374310:CDS 20.0%
! GATTAAAAAAAGAGGGAAAA+TGG - chr3_1:73730430-73730449 None:intergenic 25.0%
! TGTTAATTTACAATTTGTCG+TGG - chr3_1:73730849-73730868 None:intergenic 25.0%
! CGACAAATTGTAAATTAACA+TGG + chr3_1:73730849-73730868 Msa0374310:exon 25.0%
! AACATTAAGCAATAGGATAA+GGG + chr3_1:73732470-73732489 Msa0374310:intron 25.0%
! CATATATGTTGAACTTTATG+TGG + chr3_1:73732620-73732639 Msa0374310:intron 25.0%
! CTCTATACTATCATTTAATC+AGG + chr3_1:73732675-73732694 Msa0374310:intron 25.0%
! TTAGAAGAAAATTGTATTGG+TGG - chr3_1:73732843-73732862 None:intergenic 25.0%
! GTCTTAGAAGAAAATTGTAT+TGG - chr3_1:73732846-73732865 None:intergenic 25.0%
!!! TTCTTCTAAGACAATGAAAT+TGG + chr3_1:73732854-73732873 Msa0374310:intron 25.0%
! TTTGATATTAACTCTTTCTC+AGG - chr3_1:73732900-73732919 None:intergenic 25.0%
! AATGTAGATGAAAGGTTTAT+CGG - chr3_1:73732924-73732943 None:intergenic 25.0%
! ATGGGAAAAGAAATTATACA+AGG + chr3_1:73732959-73732978 Msa0374310:intron 25.0%
! GAAATTATACAAGGAAGTTA+AGG + chr3_1:73732968-73732987 Msa0374310:intron 25.0%
!! GAAATTAGTTACTTTATGCA+TGG + chr3_1:73733009-73733028 Msa0374310:intron 25.0%
! ATGGGAAAAGAAATTATACA+AGG + chr3_1:73732959-73732978 Msa0374310:intron 25.0%
! GAAATTATACAAGGAAGTTA+AGG + chr3_1:73732968-73732987 Msa0374310:intron 25.0%
! TTCATGAAATTAGAAAACGT+TGG + chr3_1:73733116-73733135 Msa0374310:intron 25.0%
! GTTTGAGAGATGATATAAAT+TGG + chr3_1:73733250-73733269 Msa0374310:intron 25.0%
!!! AAAAGTGTTGAAACTATATC+AGG + chr3_1:73733577-73733596 Msa0374310:CDS 25.0%
!!! AAAGTGTTGAAACTATATCA+GGG + chr3_1:73733578-73733597 Msa0374310:CDS 25.0%
! TTAATGAAACAGTTCAACTT+TGG - chr3_1:73733849-73733868 None:intergenic 25.0%
! CAAAATCAAACATTCCATTA+GGG - chr3_1:73733905-73733924 None:intergenic 25.0%
!!! AATTTGTTGTTTTTCCTACA+CGG + chr3_1:73734159-73734178 Msa0374310:intron 25.0%
! ATGAATAGAATTTCAGAAAG+AGG + chr3_1:73734633-73734652 Msa0374310:CDS 25.0%
! TGAATAGAATTTCAGAAAGA+GGG + chr3_1:73734634-73734653 Msa0374310:CDS 25.0%
! TAATAGTTTACAAACTGGTT+TGG + chr3_1:73734980-73734999 Msa0374310:CDS 25.0%
!!! CTTTCTAAGGTCTTAAAAAT+GGG - chr3_1:73735008-73735027 None:intergenic 25.0%
!!! ACTTTCTAAGGTCTTAAAAA+TGG - chr3_1:73735009-73735028 None:intergenic 25.0%
TTTGCATTTGCATTTGCATT+TGG - chr3_1:73730306-73730325 None:intergenic 30.0%
GTATATAGTTAGGAAATTGG+TGG - chr3_1:73730361-73730380 None:intergenic 30.0%
GGAGTATATAGTTAGGAAAT+TGG - chr3_1:73730364-73730383 None:intergenic 30.0%
TGTTGTTGGAGTATATAGTT+AGG - chr3_1:73730371-73730390 None:intergenic 30.0%
! GATCTGTAAATTGTTGTTGT+TGG - chr3_1:73730385-73730404 None:intergenic 30.0%
AATTATAACAGAAAGAGCCA+AGG - chr3_1:73730535-73730554 None:intergenic 30.0%
GTGAAAATTAGTGAAGGAAA+AGG - chr3_1:73730636-73730655 None:intergenic 30.0%
AGCATAATGAAGGAAAGAAA+TGG - chr3_1:73730799-73730818 None:intergenic 30.0%
TGGAAGAAAAAGATCTTGAT+CGG - chr3_1:73731037-73731056 None:intergenic 30.0%
GAAGAAATTGAAGAAGAAGA+AGG - chr3_1:73731072-73731091 None:intergenic 30.0%
!!! GTGGTTACTACTATTTTTAG+AGG - chr3_1:73731130-73731149 None:intergenic 30.0%
TCTCATTTGAATCTTTCTTC+TGG + chr3_1:73731183-73731202 Msa0374310:CDS 30.0%
TTTGAATCTTTCTTCTGGAT+CGG + chr3_1:73731188-73731207 Msa0374310:CDS 30.0%
CAAGAAAGAGGATTTGAATA+TGG + chr3_1:73731303-73731322 Msa0374310:CDS 30.0%
TGTTGATATGGATATGGATA+TGG - chr3_1:73731387-73731406 None:intergenic 30.0%
CAATCTTGTTGATATGGATA+TGG - chr3_1:73731393-73731412 None:intergenic 30.0%
CATATCCATATCAACAAGAT+TGG + chr3_1:73731391-73731410 Msa0374310:CDS 30.0%
TGATTCCAATCTTGTTGATA+TGG - chr3_1:73731399-73731418 None:intergenic 30.0%
ATTGGAATCAAAATCAACCA+GGG + chr3_1:73731409-73731428 Msa0374310:CDS 30.0%
TATGGGTATAATGGTATGAA+TGG + chr3_1:73731552-73731571 Msa0374310:CDS 30.0%
!!! TAGTGGTTTTTTTGGTTTTC+CGG + chr3_1:73731581-73731600 Msa0374310:CDS 30.0%
! TATTCTGGTTATGGAAGTTA+TGG + chr3_1:73731714-73731733 Msa0374310:CDS 30.0%
! GTTATGGAAGTTATGGATTA+GGG + chr3_1:73731721-73731740 Msa0374310:CDS 30.0%
AGATTGTGCTAGAATAATCA+TGG + chr3_1:73732403-73732422 Msa0374310:intron 30.0%
GATTGTGCTAGAATAATCAT+GGG + chr3_1:73732404-73732423 Msa0374310:intron 30.0%
ATGACTGATGTATGTTATGT+AGG + chr3_1:73732429-73732448 Msa0374310:intron 30.0%
TGCTTACAACATTAAGCAAT+AGG + chr3_1:73732463-73732482 Msa0374310:intron 30.0%
CAACATTAAGCAATAGGATA+AGG + chr3_1:73732469-73732488 Msa0374310:intron 30.0%
ACATTAAGCAATAGGATAAG+GGG + chr3_1:73732471-73732490 Msa0374310:intron 30.0%
! TTTTCTTGAAGCACAAAACT+GGG - chr3_1:73732541-73732560 None:intergenic 30.0%
! ATTTTCTTGAAGCACAAAAC+TGG - chr3_1:73732542-73732561 None:intergenic 30.0%
GATAAACCTTTCATCTACAT+TGG + chr3_1:73732923-73732942 Msa0374310:intron 30.0%
ATTGGAGAAACTTTATGCAT+GGG + chr3_1:73732941-73732960 Msa0374310:intron 30.0%
! TTACTGTGTATCCTTCTTTT+AGG + chr3_1:73733172-73733191 Msa0374310:intron 30.0%
! TACTGTGTATCCTTCTTTTA+GGG + chr3_1:73733173-73733192 Msa0374310:intron 30.0%
ATGAAAGGGAAACTATGTAT+AGG - chr3_1:73733219-73733238 None:intergenic 30.0%
! AAAAACAATGCTGATTATGC+AGG - chr3_1:73733320-73733339 None:intergenic 30.0%
TTGTATTTAACACTGTTCTC+AGG + chr3_1:73733414-73733433 Msa0374310:intron 30.0%
!! AGCATCAATTTTAGTAGCTT+CGG - chr3_1:73733509-73733528 None:intergenic 30.0%
AGCTTGCAGCATTAATTAAT+GGG + chr3_1:73733638-73733657 Msa0374310:CDS 30.0%
AGTAGAAATTTCTCAGCTAA+GGG + chr3_1:73733711-73733730 Msa0374310:intron 30.0%
!! ACTGTCAACTAAAGCATTTT+TGG - chr3_1:73733817-73733836 None:intergenic 30.0%
TATGAATCAGAAATCCCTAA+TGG + chr3_1:73733888-73733907 Msa0374310:intron 30.0%
GCAAAATCAAACATTCCATT+AGG - chr3_1:73733906-73733925 None:intergenic 30.0%
TATCATCAATAGTGACAACA+AGG - chr3_1:73733939-73733958 None:intergenic 30.0%
! GTCACTATTGATGATAATGT+AGG + chr3_1:73733943-73733962 Msa0374310:intron 30.0%
CAATCTCTCAAATTAAACAC+TGG + chr3_1:73734369-73734388 Msa0374310:CDS 30.0%
AAGCCATTATAGAACTTGAA+AGG + chr3_1:73734415-73734434 Msa0374310:CDS 30.0%
AGCCATTATAGAACTTGAAA+GGG + chr3_1:73734416-73734435 Msa0374310:CDS 30.0%
ATGTTGAAAATTTGAATGGG+TGG + chr3_1:73734493-73734512 Msa0374310:CDS 30.0%
CTTTCATTATCTGCAATGAT+TGG + chr3_1:73734601-73734620 Msa0374310:CDS 30.0%
GAATAGAATTTCAGAAAGAG+GGG + chr3_1:73734635-73734654 Msa0374310:CDS 30.0%
GCTTCTAATAGTTTACAAAC+TGG + chr3_1:73734975-73734994 Msa0374310:CDS 30.0%
ATTAACTCTAGCTGCAAAAT+TGG - chr3_1:73735122-73735141 None:intergenic 30.0%
TAGAGTTAATCTTGGTATGT+AGG + chr3_1:73735132-73735151 Msa0374310:three_prime_UTR 30.0%
AAACGCGTGAAAATTAGTGA+AGG - chr3_1:73730642-73730661 None:intergenic 35.0%
! AAGAGGTTGTGTTTGTTACT+GGG - chr3_1:73730672-73730691 None:intergenic 35.0%
TACTAAAATGGAAGCAGCAT+GGG - chr3_1:73730729-73730748 None:intergenic 35.0%
ATACTAAAATGGAAGCAGCA+TGG - chr3_1:73730730-73730749 None:intergenic 35.0%
GGAAAGAAATGGAAGAAAGA+TGG - chr3_1:73730788-73730807 None:intergenic 35.0%
! GAGAAATGGAAGCATAATGA+AGG - chr3_1:73730809-73730828 None:intergenic 35.0%
!! TTTGTGGTGTTGTTGAGAAA+TGG - chr3_1:73730823-73730842 None:intergenic 35.0%
!!! CAATTTGTCGTGGTTTTTTG+TGG - chr3_1:73730839-73730858 None:intergenic 35.0%
! TTGTAAATTAACATGGGCTG+CGG + chr3_1:73730856-73730875 Msa0374310:exon 35.0%
! CAAGATCTTTTTCTTCCAAC+TGG + chr3_1:73731039-73731058 Msa0374310:CDS 35.0%
ACTCAAGATCATGATCATCA+TGG - chr3_1:73731152-73731171 None:intergenic 35.0%
TGATGAACATGATCTGAAGA+AGG - chr3_1:73731225-73731244 None:intergenic 35.0%
TTATACCCGTAAGAAGAAGA+TGG - chr3_1:73731360-73731379 None:intergenic 35.0%
GATTGGAATCAAAATCAACC+AGG + chr3_1:73731408-73731427 Msa0374310:CDS 35.0%
TTGGAATCAAAATCAACCAG+GGG + chr3_1:73731410-73731429 Msa0374310:CDS 35.0%
TAAGCATAACTATTAACCCC+TGG - chr3_1:73731429-73731448 None:intergenic 35.0%
TTATACCCATAACCACCATA+AGG - chr3_1:73731543-73731562 None:intergenic 35.0%
TATGGTGGTTATGGGTATAA+TGG + chr3_1:73731543-73731562 Msa0374310:CDS 35.0%
!!! GGAGGTAATAGTGGTTTTTT+TGG + chr3_1:73731573-73731592 Msa0374310:CDS 35.0%
AAATCCCAAGTAGAAACTCT+CGG - chr3_1:73731660-73731679 None:intergenic 35.0%
GGTTATGGAAGTTATGGATT+AGG + chr3_1:73731720-73731739 Msa0374310:CDS 35.0%
!! GAAGTTATGGATTAGGGTTA+GGG + chr3_1:73731727-73731746 Msa0374310:CDS 35.0%
TCCTGATTCAAAAGAAGTGA+GGG + chr3_1:73731770-73731789 Msa0374310:CDS 35.0%
TCCTGAATTAGAAGATGAGA+CGG + chr3_1:73731806-73731825 Msa0374310:CDS 35.0%
AGAAAAGGAAGAGGTTGTTA+AGG + chr3_1:73731896-73731915 Msa0374310:CDS 35.0%
GAAAAGGAAGAGGTTGTTAA+GGG + chr3_1:73731897-73731916 Msa0374310:CDS 35.0%
! CCTTTAGGAACAACATTATC+AGG - chr3_1:73732065-73732084 None:intergenic 35.0%
! CCTGATAATGTTGTTCCTAA+AGG + chr3_1:73732062-73732081 Msa0374310:CDS 35.0%
GGATCTAAAAGAGGTTGTTA+GGG + chr3_1:73732217-73732236 Msa0374310:CDS 35.0%
! TTTGAGACTGCTTCTAATCA+TGG + chr3_1:73732254-73732273 Msa0374310:CDS 35.0%
!! TTTTGGATTTGGTTTCGTAG+TGG + chr3_1:73732374-73732393 Msa0374310:intron 35.0%
GATGTATGTTATGTAGGAGA+AGG + chr3_1:73732435-73732454 Msa0374310:intron 35.0%
! AAATTGGCAAAAGCATACTG+TGG + chr3_1:73732870-73732889 Msa0374310:intron 35.0%
! AATTGGCAAAAGCATACTGT+GGG + chr3_1:73732871-73732890 Msa0374310:intron 35.0%
GTTTCTCCAATGTAGATGAA+AGG - chr3_1:73732932-73732951 None:intergenic 35.0%
CATTGGAGAAACTTTATGCA+TGG + chr3_1:73732940-73732959 Msa0374310:intron 35.0%
TACACAGTAAATCAGCTAGA+TGG - chr3_1:73733162-73733181 None:intergenic 35.0%
! ACTGTGTATCCTTCTTTTAG+GGG + chr3_1:73733174-73733193 Msa0374310:intron 35.0%
! ATGCAAGAGATTGAAAGCAT+TGG + chr3_1:73733471-73733490 Msa0374310:CDS 35.0%
!! TTGAAAGCATTGGATAATCG+AGG + chr3_1:73733481-73733500 Msa0374310:CDS 35.0%
TTAATTAATGCTGCAAGCTG+AGG - chr3_1:73733637-73733656 None:intergenic 35.0%
CAGCTTGCAGCATTAATTAA+TGG + chr3_1:73733637-73733656 Msa0374310:CDS 35.0%
GAGTAGAAATTTCTCAGCTA+AGG + chr3_1:73733710-73733729 Msa0374310:intron 35.0%
! GCTATCCAATTCCATTTTGT+TGG + chr3_1:73733766-73733785 Msa0374310:intron 35.0%
TTGCACCAACAAAATGGAAT+TGG - chr3_1:73733774-73733793 None:intergenic 35.0%
! GCTAATTTGCACCAACAAAA+TGG - chr3_1:73733780-73733799 None:intergenic 35.0%
!! GTCAACTAAAGCATTTTTGG+AGG - chr3_1:73733814-73733833 None:intergenic 35.0%
TGAAACAGTTCAACTTTGGA+GGG - chr3_1:73733845-73733864 None:intergenic 35.0%
ATGAAACAGTTCAACTTTGG+AGG - chr3_1:73733846-73733865 None:intergenic 35.0%
GGGATTTCTGATTCATAGAT+AGG - chr3_1:73733885-73733904 None:intergenic 35.0%
CTATTCTCAGCGTCTTATAA+AGG - chr3_1:73733979-73733998 None:intergenic 35.0%
TATAAGACGCTGAGAATAGA+TGG + chr3_1:73733980-73733999 Msa0374310:intron 35.0%
TCAATCTCTCGAGCTATAAT+TGG - chr3_1:73734035-73734054 None:intergenic 35.0%
GCGTTTATCTCACATTATGT+CGG + chr3_1:73734067-73734086 Msa0374310:intron 35.0%
!!! CATCATTTTTGGTTTTGGGA+TGG + chr3_1:73734133-73734152 Msa0374310:intron 35.0%
TCAGCAGATTGATAAGAATG+TGG + chr3_1:73734289-73734308 Msa0374310:intron 35.0%
!! CTCCCTTTCAAGTTCTATAA+TGG - chr3_1:73734421-73734440 None:intergenic 35.0%
! TTTCTTCAGGTTCATCAAGA+AGG - chr3_1:73734530-73734549 None:intergenic 35.0%
TTGCAGATAATGAAAGCTTG+CGG - chr3_1:73734597-73734616 None:intergenic 35.0%
AGAAACAAGATGAGGAACAA+AGG + chr3_1:73734706-73734725 Msa0374310:CDS 35.0%
TCGAAGTTCAATTCTGATAG+TGG + chr3_1:73734846-73734865 Msa0374310:CDS 35.0%
AGAAGAAATTGCATGATGAG+AGG + chr3_1:73734913-73734932 Msa0374310:CDS 35.0%
GAAGAAATTGCATGATGAGA+GGG + chr3_1:73734914-73734933 Msa0374310:CDS 35.0%
AACTATTAGAAGCTGCATCA+CGG - chr3_1:73734968-73734987 None:intergenic 35.0%
!! CTCTGAAGTGAAACTTTCTA+AGG - chr3_1:73735021-73735040 None:intergenic 35.0%
CTTAGAAAGTTTCACTTCAG+AGG + chr3_1:73735019-73735038 Msa0374310:CDS 35.0%
TTTGCAGCTAGAGTTAATCT+TGG + chr3_1:73735124-73735143 Msa0374310:three_prime_UTR 35.0%
AGTTTCAGCAACTAAAGCTT+TGG + chr3_1:73735197-73735216 Msa0374310:three_prime_UTR 35.0%
GTTTCAGCAACTAAAGCTTT+GGG + chr3_1:73735198-73735217 Msa0374310:three_prime_UTR 35.0%
! ATTTTGCCTGACTGTAGATT+GGG - chr3_1:73735271-73735290 None:intergenic 35.0%
! AATTTTGCCTGACTGTAGAT+TGG - chr3_1:73735272-73735291 None:intergenic 35.0%
!! TGGTGGAGATTTTTCAGAGA+AGG - chr3_1:73730344-73730363 None:intergenic 40.0%
!! CATAGAGATTGGTGATGTTG+GGG - chr3_1:73730407-73730426 None:intergenic 40.0%
!! GCATAGAGATTGGTGATGTT+GGG - chr3_1:73730408-73730427 None:intergenic 40.0%
AGGGAAAATGGCATAGAGAT+TGG - chr3_1:73730418-73730437 None:intergenic 40.0%
TGTACTCTGAACTCAATCCT+TGG + chr3_1:73730515-73730534 Msa0374310:five_prime_UTR 40.0%
CATCTCTATTCACCCATCAA+CGG + chr3_1:73730593-73730612 Msa0374310:five_prime_UTR 40.0%
AGTGAAATCTGACCGTTGAT+GGG - chr3_1:73730608-73730627 None:intergenic 40.0%
! GAAGAGGTTGTGTTTGTTAC+TGG - chr3_1:73730673-73730692 None:intergenic 40.0%
! TTGCTCTGCATTTTGTGAAG+AGG - chr3_1:73730689-73730708 None:intergenic 40.0%
! TGTAAATTAACATGGGCTGC+GGG + chr3_1:73730857-73730876 Msa0374310:exon 40.0%
TTCTCTGCAAAGAGTTACCA+CGG - chr3_1:73730905-73730924 None:intergenic 40.0%
CTGTAAATAAGAGAGATGCG+CGG - chr3_1:73730977-73730996 None:intergenic 40.0%
TTACAGTCTCTCAGAGACAT+CGG + chr3_1:73730991-73731010 Msa0374310:CDS 40.0%
CAAGATCATGATCATCATGG+TGG - chr3_1:73731149-73731168 None:intergenic 40.0%
! TTCTTGTTCTCGTTCAGGTT+CGG - chr3_1:73731283-73731302 None:intergenic 40.0%
TCTTGTTCTTGTTCTCGTTC+AGG - chr3_1:73731288-73731307 None:intergenic 40.0%
CGAGAACAAGAACAAGAAAG+AGG + chr3_1:73731291-73731310 Msa0374310:CDS 40.0%
! TAGATCACAGATTTTCCACG+TGG - chr3_1:73731471-73731490 None:intergenic 40.0%
GTTCTCCTTATGGTGGTTAT+GGG + chr3_1:73731535-73731554 Msa0374310:CDS 40.0%
GGGTATAATGGTATGAATGG+AGG + chr3_1:73731555-73731574 Msa0374310:CDS 40.0%
GGTATGAATGGAGGTAATAG+TGG + chr3_1:73731564-73731583 Msa0374310:CDS 40.0%
!!! TGGTTTTTTTGGTTTTCCGG+CGG + chr3_1:73731584-73731603 Msa0374310:CDS 40.0%
!! GGAAGTTATGGATTAGGGTT+AGG + chr3_1:73731726-73731745 Msa0374310:CDS 40.0%
GTCCTGATTCAAAAGAAGTG+AGG + chr3_1:73731769-73731788 Msa0374310:CDS 40.0%
! TCCCTCACTTCTTTTGAATC+AGG - chr3_1:73731774-73731793 None:intergenic 40.0%
TCCGTCTCATCTTCTAATTC+AGG - chr3_1:73731810-73731829 None:intergenic 40.0%
ATTAGAAGATGAGACGGAAC+AGG + chr3_1:73731812-73731831 Msa0374310:CDS 40.0%
TGAGGAGAAGAAGAAGAAAG+TGG + chr3_1:73731857-73731876 Msa0374310:CDS 40.0%
AGAGGAAGTGGAGAAAGAAA+AGG + chr3_1:73731881-73731900 Msa0374310:CDS 40.0%
AGTGGAGAAAGAAAAGGAAG+AGG + chr3_1:73731887-73731906 Msa0374310:CDS 40.0%
! GTTGTTAAGGGTGGAGATTT+TGG + chr3_1:73731909-73731928 Msa0374310:CDS 40.0%
!! TGAAGGTACTTCGAATTCGA+AGG + chr3_1:73731932-73731951 Msa0374310:CDS 40.0%
TAGTGAGGGAAGTTCCAAAA+CGG + chr3_1:73731980-73731999 Msa0374310:CDS 40.0%
TTTCATAGTAGCGAAGGTAG+TGG + chr3_1:73732008-73732027 Msa0374310:CDS 40.0%
! TTTCTAGGAGGAGATCCTTT+AGG - chr3_1:73732080-73732099 None:intergenic 40.0%
GATCTCCTCCTAGAAAGAAA+GGG + chr3_1:73732084-73732103 Msa0374310:CDS 40.0%
ATCTCCTCCTAGAAAGAAAG+GGG + chr3_1:73732085-73732104 Msa0374310:CDS 40.0%
AAACTCACCCCTTTCTTTCT+AGG - chr3_1:73732095-73732114 None:intergenic 40.0%
GTTACAACAGTAGAGGTTGA+TGG + chr3_1:73732143-73732162 Msa0374310:CDS 40.0%
TTAAGCACTTTGTCTCCACA+TGG + chr3_1:73732188-73732207 Msa0374310:CDS 40.0%
TTTGTCTCCACATGGAACTA+GGG + chr3_1:73732196-73732215 Msa0374310:CDS 40.0%
TTTAGATCCCTAGTTCCATG+TGG - chr3_1:73732206-73732225 None:intergenic 40.0%
TGGAACTAGGGATCTAAAAG+AGG + chr3_1:73732208-73732227 Msa0374310:CDS 40.0%
GGGATCTAAAAGAGGTTGTT+AGG + chr3_1:73732216-73732235 Msa0374310:CDS 40.0%
TGCTTCTAATCATGGAAGAG+AGG + chr3_1:73732262-73732281 Msa0374310:CDS 40.0%
!! TCAAGACTTGCTGCATTTAG+AGG + chr3_1:73732323-73732342 Msa0374310:CDS 40.0%
!! TGCTGCATTTAGAGGTATCA+AGG + chr3_1:73732331-73732350 Msa0374310:intron 40.0%
AATAGGATAAGGGGCTTGTA+GGG + chr3_1:73732480-73732499 Msa0374310:intron 40.0%
!! GCAGTTGCAGTTTGATTTGA+AGG + chr3_1:73732562-73732581 Msa0374310:CDS 40.0%
! ATTGGCAAAAGCATACTGTG+GGG + chr3_1:73732872-73732891 Msa0374310:intron 40.0%
GTGTTGAAACTATATCAGGG+AGG + chr3_1:73733581-73733600 Msa0374310:CDS 40.0%
AGGGAGGATACATAAACTGA+GGG + chr3_1:73733597-73733616 Msa0374310:CDS 40.0%
GCTGAGAAATTTCTACTCAC+AGG - chr3_1:73733708-73733727 None:intergenic 40.0%
ATCTCACATTATGTCGGAAG+TGG + chr3_1:73734073-73734092 Msa0374310:intron 40.0%
AGAAAAACACTCAACCGTGT+AGG - chr3_1:73734176-73734195 None:intergenic 40.0%
! TACACGGTTGAGTGTTTTTC+TGG + chr3_1:73734175-73734194 Msa0374310:intron 40.0%
!!! GTTGAGTGTTTTTCTGGAGT+TGG + chr3_1:73734181-73734200 Msa0374310:intron 40.0%
! TTTTACTCTCCATGATAGCC+TGG - chr3_1:73734347-73734366 None:intergenic 40.0%
!! ACTGGTTTGCAAAGAGATGA+AGG + chr3_1:73734387-73734406 Msa0374310:CDS 40.0%
TTGAAAGGGAGCTTCTGAAT+TGG + chr3_1:73734430-73734449 Msa0374310:CDS 40.0%
GTGCACACAGTTCAACAATT+GGG + chr3_1:73734452-73734471 Msa0374310:CDS 40.0%
GAACCTGAAGAAACAGATGA+TGG + chr3_1:73734537-73734556 Msa0374310:CDS 40.0%
! ACACCATCATCTGTTTCTTC+AGG - chr3_1:73734543-73734562 None:intergenic 40.0%
TAGAATTTCAGAAAGAGGGG+TGG + chr3_1:73734638-73734657 Msa0374310:CDS 40.0%
TCAAAAGCTGCATGAGCTAT+GGG + chr3_1:73734683-73734702 Msa0374310:CDS 40.0%
AACAAGATGAGGAACAAAGG+CGG + chr3_1:73734709-73734728 Msa0374310:CDS 40.0%
! TTTGTCATGCTCGTGTTTTG+AGG - chr3_1:73734805-73734824 None:intergenic 40.0%
ACGAGCATGACAAAGTTTCA+GGG + chr3_1:73734811-73734830 Msa0374310:CDS 40.0%
CCTAATGGCTTCCTTATGTT+TGG - chr3_1:73734940-73734959 None:intergenic 40.0%
CCAAACATAAGGAAGCCATT+AGG + chr3_1:73734937-73734956 Msa0374310:CDS 40.0%
AGAAAGTTTCACTTCAGAGG+TGG + chr3_1:73735022-73735041 Msa0374310:CDS 40.0%
AACTCTAGCTGCAAAATTGG+TGG - chr3_1:73735119-73735138 None:intergenic 40.0%
!!! CCTCTTCAGAGAGTTTTAAG+AGG - chr3_1:73735164-73735183 None:intergenic 40.0%
! CCTCTTAAAACTCTCTGAAG+AGG + chr3_1:73735161-73735180 Msa0374310:three_prime_UTR 40.0%
!! GGCATAGAGATTGGTGATGT+TGG - chr3_1:73730409-73730428 None:intergenic 45.0%
AGATGGATCGTGGATCGATT+TGG - chr3_1:73730578-73730597 None:intergenic 45.0%
! CGTTGATGGGTGAATAGAGA+TGG - chr3_1:73730595-73730614 None:intergenic 45.0%
GAGTGAAATCTGACCGTTGA+TGG - chr3_1:73730609-73730628 None:intergenic 45.0%
! GGTTGTGTTTGTTACTGGGA+GGG - chr3_1:73730668-73730687 None:intergenic 45.0%
! AGGTTGTGTTTGTTACTGGG+AGG - chr3_1:73730669-73730688 None:intergenic 45.0%
CAGTTCAGTGAGGGTAATAG+TGG - chr3_1:73730760-73730779 None:intergenic 45.0%
ATGGCTGTTCAGTTCAGTGA+GGG - chr3_1:73730769-73730788 None:intergenic 45.0%
! GTAAATTAACATGGGCTGCG+GGG + chr3_1:73730858-73730877 Msa0374310:exon 45.0%
! TAAATTAACATGGGCTGCGG+GGG + chr3_1:73730859-73730878 Msa0374310:exon 45.0%
TCTCTGCAAAGAGTTACCAC+GGG - chr3_1:73730904-73730923 None:intergenic 45.0%
TAAATAAGAGAGATGCGCGG+CGG - chr3_1:73730974-73730993 None:intergenic 45.0%
GAAGAAGGAGTAGAACCAGT+TGG - chr3_1:73731057-73731076 None:intergenic 45.0%
AGAAGGCAATGTGAGAACAG+GGG - chr3_1:73731094-73731113 None:intergenic 45.0%
GAGAAGGCAATGTGAGAACA+GGG - chr3_1:73731095-73731114 None:intergenic 45.0%
GAGGATTTACCTTCACGAGA+AGG - chr3_1:73731111-73731130 None:intergenic 45.0%
! AAGAAGAAGATGGTTCGGGT+TGG - chr3_1:73731350-73731369 None:intergenic 45.0%
CCGTAAGAAGAAGATGGTTC+GGG - chr3_1:73731354-73731373 None:intergenic 45.0%
CCCGAACCATCTTCTTCTTA+CGG + chr3_1:73731351-73731370 Msa0374310:CDS 45.0%
CCCGTAAGAAGAAGATGGTT+CGG - chr3_1:73731355-73731374 None:intergenic 45.0%
CCGAACCATCTTCTTCTTAC+GGG + chr3_1:73731352-73731371 Msa0374310:CDS 45.0%
ATGAAGAAATCTGCACCACG+TGG + chr3_1:73731453-73731472 Msa0374310:CDS 45.0%
!! CAATGGACTGGTTCTCCTTA+TGG + chr3_1:73731525-73731544 Msa0374310:CDS 45.0%
GGTTCTCCTTATGGTGGTTA+TGG + chr3_1:73731534-73731553 Msa0374310:CDS 45.0%
!!! GGTTTTTTTGGTTTTCCGGC+GGG + chr3_1:73731585-73731604 Msa0374310:CDS 45.0%
ACCACCGAGAGTTTCTACTT+GGG + chr3_1:73731653-73731672 Msa0374310:CDS 45.0%
AAAGAAGTGAGGGAGAGAGA+AGG + chr3_1:73731780-73731799 Msa0374310:CDS 45.0%
AAGAAGTGAGGGAGAGAGAA+GGG + chr3_1:73731781-73731800 Msa0374310:CDS 45.0%
GAAGAAGAAGAAAGTGGCAG+AGG + chr3_1:73731863-73731882 Msa0374310:CDS 45.0%
AAGGAAGAGGTTGTTAAGGG+TGG + chr3_1:73731900-73731919 Msa0374310:CDS 45.0%
!! AAGGGTGGAGATTTTGGTGA+AGG + chr3_1:73731915-73731934 Msa0374310:CDS 45.0%
CTACTACTCACCTGTTGCAA+TGG - chr3_1:73731963-73731982 None:intergenic 45.0%
CAACAGGTGAGTAGTAGTGA+GGG + chr3_1:73731966-73731985 Msa0374310:CDS 45.0%
! ACTATGAAACCGCACCGTTT+TGG - chr3_1:73731997-73732016 None:intergenic 45.0%
GGATCTCCTCCTAGAAAGAA+AGG + chr3_1:73732083-73732102 Msa0374310:CDS 45.0%
!!! AGGGGTGAGTTTTGAGATTG+AGG + chr3_1:73732103-73732122 Msa0374310:CDS 45.0%
!!! GGGGTGAGTTTTGAGATTGA+GGG + chr3_1:73732104-73732123 Msa0374310:CDS 45.0%
CTTTGTCTCCACATGGAACT+AGG + chr3_1:73732195-73732214 Msa0374310:CDS 45.0%
AGAGGTTGCATTTCTTCTCG+AGG + chr3_1:73732280-73732299 Msa0374310:CDS 45.0%
GCAAGTCTTGACTGATAAGG+TGG - chr3_1:73732314-73732333 None:intergenic 45.0%
GCAGCAAGTCTTGACTGATA+AGG - chr3_1:73732317-73732336 None:intergenic 45.0%
CAATAGGATAAGGGGCTTGT+AGG + chr3_1:73732479-73732498 Msa0374310:intron 45.0%
! AATTGTATTGGTGGCCCAGA+TGG - chr3_1:73732834-73732853 None:intergenic 45.0%
!! ATCCTTCTTTTAGGGGACGA+AGG + chr3_1:73733181-73733200 Msa0374310:intron 45.0%
ACTGTTCTCAGGATGAAGAG+AGG + chr3_1:73733425-73733444 Msa0374310:intron 45.0%
CAGGGAGGATACATAAACTG+AGG + chr3_1:73733596-73733615 Msa0374310:CDS 45.0%
TCTCAGCGTCTTATAAAGGC+AGG - chr3_1:73733975-73733994 None:intergenic 45.0%
TAGATGGTCACGTGGTATAG+AGG + chr3_1:73733996-73734015 Msa0374310:intron 45.0%
AGATGGTCACGTGGTATAGA+GGG + chr3_1:73733997-73734016 Msa0374310:intron 45.0%
TAGCTCGAGAGATTGATGAG+AGG + chr3_1:73734039-73734058 Msa0374310:intron 45.0%
ATTATGTCGGAAGTGGCTGA+AGG + chr3_1:73734080-73734099 Msa0374310:intron 45.0%
TGATAGCCTGGAACTGTTTC+TGG - chr3_1:73734335-73734354 None:intergenic 45.0%
GAAACAGTTCCAGGCTATCA+TGG + chr3_1:73734335-73734354 Msa0374310:CDS 45.0%
GGTGCACACAGTTCAACAAT+TGG + chr3_1:73734451-73734470 Msa0374310:CDS 45.0%
CACAGTTCAACAATTGGGTC+AGG + chr3_1:73734457-73734476 Msa0374310:CDS 45.0%
ATTTGAATGGGTGGCTCAGA+AGG + chr3_1:73734502-73734521 Msa0374310:CDS 45.0%
!! AATCCGACTTGGAGAGTAAG+GGG - chr3_1:73734568-73734587 None:intergenic 45.0%
!! CAATCCGACTTGGAGAGTAA+GGG - chr3_1:73734569-73734588 None:intergenic 45.0%
CTCAAAAGCTGCATGAGCTA+TGG + chr3_1:73734682-73734701 Msa0374310:CDS 45.0%
GCTATGGGAGAAACAAGATG+AGG + chr3_1:73734698-73734717 Msa0374310:CDS 45.0%
AGGAACAAAGGCGGAAAATC+AGG + chr3_1:73734718-73734737 Msa0374310:CDS 45.0%
GGAACAAAGGCGGAAAATCA+GGG + chr3_1:73734719-73734738 Msa0374310:CDS 45.0%
!!! GTGTTTTGAGGCTCCCATTT+CGG - chr3_1:73734793-73734812 None:intergenic 45.0%
CACGAGCATGACAAAGTTTC+AGG + chr3_1:73734810-73734829 Msa0374310:CDS 45.0%
TTCGCCACTGGATGATCTAA+AGG + chr3_1:73734872-73734891 Msa0374310:CDS 45.0%
TCCACCTTTAGATCATCCAG+TGG - chr3_1:73734879-73734898 None:intergenic 45.0%
TGATGAGAGGGCCAAACATA+AGG + chr3_1:73734926-73734945 Msa0374310:CDS 45.0%
AATCGTCCATGTTCTCTACG+AGG - chr3_1:73735087-73735106 None:intergenic 45.0%
! GACTGTAGATTGGGTGTTAC+AGG - chr3_1:73735262-73735281 None:intergenic 45.0%
GTAACACCCAATCTACAGTC+AGG + chr3_1:73735262-73735281 Msa0374310:three_prime_UTR 45.0%
!! TGGATCGATTTGGAAGGAGG+GGG - chr3_1:73730568-73730587 None:intergenic 50.0%
!! GTGGATCGATTTGGAAGGAG+GGG - chr3_1:73730569-73730588 None:intergenic 50.0%
!! CGTGGATCGATTTGGAAGGA+GGG - chr3_1:73730570-73730589 None:intergenic 50.0%
!! TCGTGGATCGATTTGGAAGG+AGG - chr3_1:73730571-73730590 None:intergenic 50.0%
!! GGATCGTGGATCGATTTGGA+AGG - chr3_1:73730574-73730593 None:intergenic 50.0%
GGGTGAATAGAGATGGATCG+TGG - chr3_1:73730588-73730607 None:intergenic 50.0%
GGAAGCAGCATGGGAAAATG+TGG - chr3_1:73730720-73730739 None:intergenic 50.0%
GATGGCTGTTCAGTTCAGTG+AGG - chr3_1:73730770-73730789 None:intergenic 50.0%
CTCTGCAAAGAGTTACCACG+GGG - chr3_1:73730903-73730922 None:intergenic 50.0%
CGAGAAGGCAATGTGAGAAC+AGG - chr3_1:73731096-73731115 None:intergenic 50.0%
CTCACATTGCCTTCTCGTGA+AGG + chr3_1:73731099-73731118 Msa0374310:CDS 50.0%
! TTCAGGTTCGGATTCAGCCT+CGG - chr3_1:73731271-73731290 None:intergenic 50.0%
!! TCGGGTTGGTGTTCGTATTG+AGG - chr3_1:73731336-73731355 None:intergenic 50.0%
!! TGGACTGGTTCTCCTTATGG+TGG + chr3_1:73731528-73731547 Msa0374310:CDS 50.0%
GTAGAAACTCTCGGTGGTGA+AGG - chr3_1:73731651-73731670 None:intergenic 50.0%
CACCACCGAGAGTTTCTACT+TGG + chr3_1:73731652-73731671 Msa0374310:CDS 50.0%
TCCCAAGTAGAAACTCTCGG+TGG - chr3_1:73731657-73731676 None:intergenic 50.0%
GACGGAACAGGAAACTGTGA+AGG + chr3_1:73731824-73731843 Msa0374310:CDS 50.0%
GGAACAGGAAACTGTGAAGG+AGG + chr3_1:73731827-73731846 Msa0374310:CDS 50.0%
TGTGAAGGAGGTTCGTCATG+AGG + chr3_1:73731839-73731858 Msa0374310:CDS 50.0%
GAAGAAAGTGGCAGAGGAAG+TGG + chr3_1:73731869-73731888 Msa0374310:CDS 50.0%
!! GAAGGAAGTGCCATTGCAAC+AGG + chr3_1:73731950-73731969 Msa0374310:CDS 50.0%
GCAACAGGTGAGTAGTAGTG+AGG + chr3_1:73731965-73731984 Msa0374310:CDS 50.0%
AGGGAAGTTCCAAAACGGTG+CGG + chr3_1:73731985-73732004 Msa0374310:CDS 50.0%
GTGCGGTTTCATAGTAGCGA+AGG + chr3_1:73732002-73732021 Msa0374310:CDS 50.0%
CTCACCCCTTTCTTTCTAGG+AGG - chr3_1:73732092-73732111 None:intergenic 50.0%
TGAGGGTGATGAAGATGCGA+CGG + chr3_1:73732121-73732140 Msa0374310:CDS 50.0%
TGCGACGGTTACAACAGTAG+AGG + chr3_1:73732136-73732155 Msa0374310:CDS 50.0%
GGATAGGAAGGTGGCTTAGA+AGG - chr3_1:73732810-73732829 None:intergenic 50.0%
CACCTTCCTATCCTCCATCT+GGG + chr3_1:73732817-73732836 Msa0374310:intron 50.0%
AGCCTTCGTCCCCTAAAAGA+AGG - chr3_1:73733186-73733205 None:intergenic 50.0%
AGCGTCTTATAAAGGCAGGC+AGG - chr3_1:73733971-73733990 None:intergenic 50.0%
GCTGAGAATAGATGGTCACG+TGG + chr3_1:73733988-73734007 Msa0374310:intron 50.0%
!! GGAACTGTTTCTGGTGGCAT+TGG - chr3_1:73734326-73734345 None:intergenic 50.0%
ATGCCACCAGAAACAGTTCC+AGG + chr3_1:73734326-73734345 Msa0374310:CDS 50.0%
!! TAGCCTGGAACTGTTTCTGG+TGG - chr3_1:73734332-73734351 None:intergenic 50.0%
TTGCCCCTTACTCTCCAAGT+CGG + chr3_1:73734562-73734581 Msa0374310:CDS 50.0%
!! CCAATCCGACTTGGAGAGTA+AGG - chr3_1:73734570-73734589 None:intergenic 50.0%
CCTTACTCTCCAAGTCGGAT+TGG + chr3_1:73734567-73734586 Msa0374310:CDS 50.0%
! CAGGGCAGAGTATCTCACAA+AGG + chr3_1:73734737-73734756 Msa0374310:CDS 50.0%
!! TGATAGTGGTGTTTCGCCAC+TGG + chr3_1:73734860-73734879 Msa0374310:CDS 50.0%
GCCACTGGATGATCTAAAGG+TGG + chr3_1:73734875-73734894 Msa0374310:CDS 50.0%
TGCATCACGGACAAGCCTAA+TGG - chr3_1:73734955-73734974 None:intergenic 50.0%
AGAGGTGGTGAAAGCTCATG+AGG + chr3_1:73735037-73735056 Msa0374310:CDS 50.0%
! GCTTTGGGTGTGTAAACGTC+AGG + chr3_1:73735213-73735232 Msa0374310:three_prime_UTR 50.0%
GGTGTGTAAACGTCAGGACA+TGG + chr3_1:73735219-73735238 Msa0374310:three_prime_UTR 50.0%
! GGCGAGAGCGTAACGTTGAT+CGG - chr3_1:73730953-73730972 None:intergenic 55.0%
GAGACATCGGAGAAGCTCTG+AGG + chr3_1:73731004-73731023 Msa0374310:CDS 55.0%
ACATGAACACCGAACACCCG+AGG + chr3_1:73731251-73731270 Msa0374310:CDS 55.0%
TCAGGTTCGGATTCAGCCTC+GGG - chr3_1:73731270-73731289 None:intergenic 55.0%
TCAAGAACCCGAGAGACACG+TGG + chr3_1:73731491-73731510 Msa0374310:CDS 55.0%
AGATTCCGCCACGTGTCTCT+CGG - chr3_1:73731502-73731521 None:intergenic 55.0%
! ACGTGGCGGAATCTGGACAA+TGG + chr3_1:73731508-73731527 Msa0374310:CDS 55.0%
GCGGAATCTGGACAATGGAC+TGG + chr3_1:73731513-73731532 Msa0374310:CDS 55.0%
GAAACTCTCGGTGGTGAAGG+TGG - chr3_1:73731648-73731667 None:intergenic 55.0%
! GGTTAGGGTTAGCGTCGAGT+GGG + chr3_1:73731742-73731761 Msa0374310:CDS 55.0%
CCAGATGGAGGATAGGAAGG+TGG - chr3_1:73732819-73732838 None:intergenic 55.0%
CCACCTTCCTATCCTCCATC+TGG + chr3_1:73732816-73732835 Msa0374310:intron 55.0%
! TGTATTGGTGGCCCAGATGG+AGG - chr3_1:73732831-73732850 None:intergenic 55.0%
AAGAGGGGTGGCAGATGCTA+TGG + chr3_1:73734650-73734669 Msa0374310:CDS 55.0%
AGAGGGGTGGCAGATGCTAT+GGG + chr3_1:73734651-73734670 Msa0374310:CDS 55.0%
CTGCAGCCTCGTAGAGAACA+TGG + chr3_1:73735078-73735097 Msa0374310:exon 55.0%
CACGGGGAACTCCTCCAGTT+TGG - chr3_1:73730887-73730906 None:intergenic 60.0%
CAAACTGGAGGAGTTCCCCG+TGG + chr3_1:73730885-73730904 Msa0374310:CDS 60.0%
CGGATTCAGCCTCGGGTGTT+CGG - chr3_1:73731263-73731282 None:intergenic 60.0%
AGAACCCGAGAGACACGTGG+CGG + chr3_1:73731494-73731513 Msa0374310:CDS 60.0%
GATTCCGCCACGTGTCTCTC+GGG - chr3_1:73731501-73731520 None:intergenic 60.0%
! GAGAGACACGTGGCGGAATC+TGG + chr3_1:73731501-73731520 Msa0374310:CDS 60.0%
! GGGTTAGGGTTAGCGTCGAG+TGG + chr3_1:73731741-73731760 Msa0374310:CDS 60.0%
GGCCCAGATGGAGGATAGGA+AGG - chr3_1:73732822-73732841 None:intergenic 60.0%
TGGTGGCCCAGATGGAGGAT+AGG - chr3_1:73732826-73732845 None:intergenic 60.0%
TGCGGAGCTCCAATCCGACT+TGG - chr3_1:73734579-73734598 None:intergenic 60.0%
CTCGGTGGTGAAGGTGGAGC+CGG - chr3_1:73731642-73731661 None:intergenic 65.0%
CTGCGGGGGCTCCAAACTGG+AGG + chr3_1:73730873-73730892 Msa0374310:CDS 70.0%
GCAGGCGTAGAAGGTCCCGC+CGG - chr3_1:73731603-73731622 None:intergenic 70.0%
GGTGAAGGTGGAGCCGGAGC+CGG - chr3_1:73731636-73731655 None:intergenic 70.0%
GGGCTGCGGGGGCTCCAAAC+TGG + chr3_1:73730870-73730889 Msa0374310:CDS 75.0%
GGAGGCGGCGCAGGCGTAGA+AGG - chr3_1:73731612-73731631 None:intergenic 75.0%
GAAGGTGGAGCCGGAGCCGG+CGG - chr3_1:73731633-73731652 None:intergenic 75.0%
! TACGCCTGCGCCGCCTCCGC+CGG + chr3_1:73731614-73731633 Msa0374310:CDS 80.0%
!!! TGCGCCGCCTCCGCCGGCTC+CGG + chr3_1:73731620-73731639 Msa0374310:CDS 85.0%
! GGAGCCGGAGCCGGCGGAGG+CGG - chr3_1:73731627-73731646 None:intergenic 85.0%
! GGTGGAGCCGGAGCCGGCGG+AGG - chr3_1:73731630-73731649 None:intergenic 85.0%
! GGAGCCGGCGGAGGCGGCGC+AGG - chr3_1:73731621-73731640 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 73730287 73735353 73730287 ID=Msa0374310;Name=Msa0374310
chr3_1 mRNA 73730287 73735353 73730287 ID=Msa0374310-mRNA-1;Parent=Msa0374310;Name=Msa0374310-mRNA-1;_AED=0.05;_eAED=0.05;_QI=581|0|0.5|0.75|0.66|1|4|262|861
chr3_1 exon 73730287 73732344 73730287 ID=Msa0374310-mRNA-1:exon:16780;Parent=Msa0374310-mRNA-1
chr3_1 exon 73732543 73732583 73732543 ID=Msa0374310-mRNA-1:exon:16781;Parent=Msa0374310-mRNA-1
chr3_1 exon 73733436 73733707 73733436 ID=Msa0374310-mRNA-1:exon:16782;Parent=Msa0374310-mRNA-1
chr3_1 exon 73734296 73735353 73734296 ID=Msa0374310-mRNA-1:exon:16783;Parent=Msa0374310-mRNA-1
chr3_1 five_prime_UTR 73730287 73730867 73730287 ID=Msa0374310-mRNA-1:five_prime_utr;Parent=Msa0374310-mRNA-1
chr3_1 CDS 73730868 73732344 73730868 ID=Msa0374310-mRNA-1:cds;Parent=Msa0374310-mRNA-1
chr3_1 CDS 73732543 73732583 73732543 ID=Msa0374310-mRNA-1:cds;Parent=Msa0374310-mRNA-1
chr3_1 CDS 73733436 73733707 73733436 ID=Msa0374310-mRNA-1:cds;Parent=Msa0374310-mRNA-1
chr3_1 CDS 73734296 73735091 73734296 ID=Msa0374310-mRNA-1:cds;Parent=Msa0374310-mRNA-1
chr3_1 three_prime_UTR 73735092 73735353 73735092 ID=Msa0374310-mRNA-1:three_prime_utr;Parent=Msa0374310-mRNA-1
Gene Sequence

>Msa0374310

ATGGGCTGCGGGGGCTCCAAACTGGAGGAGTTCCCCGTGGTAACTCTTTGCAGAGAACGCAAAAACTTTCTCAAAAACGCTTCCGATCAACGTTACGCTCTCGCCGCCGCGCATCTCTCTTATTTACAGTCTCTCAGAGACATCGGAGAAGCTCTGAGGAGATTCTCCGATCAAGATCTTTTTCTTCCAACTGGTTCTACTCCTTCTTCTTCTTCAATTTCTTCCCCTGTTCTCACATTGCCTTCTCGTGAAGGTAAATCCTCTAAAAATAGTAGTAACCACCATGATGATCATGATCTTGAGTACGATGATGATTCTCATTTGAATCTTTCTTCTGGATCGGAGTTGAGTTCACCTTCTTCAGATCATGTTCATCATCATCAACATGAACACCGAACACCCGAGGCTGAATCCGAACCTGAACGAGAACAAGAACAAGAAAGAGGATTTGAATATGGACACGAACCTCAATACGAACACCAACCCGAACCATCTTCTTCTTACGGGTATAATTATCCATATCCATATCCATATCAACAAGATTGGAATCAAAATCAACCAGGGGTTAATAGTTATGCTTATTATATGAAGAAATCTGCACCACGTGGAAAATCTGTGATCTATCAAGAACCCGAGAGACACGTGGCGGAATCTGGACAATGGACTGGTTCTCCTTATGGTGGTTATGGGTATAATGGTATGAATGGAGGTAATAGTGGTTTTTTTGGTTTTCCGGCGGGACCTTCTACGCCTGCGCCGCCTCCGCCGGCTCCGGCTCCACCTTCACCACCGAGAGTTTCTACTTGGGATTTTCTTAACTTTTTTGAGAGTGTTGACAATAATAATTATTCTGGTTATGGAAGTTATGGATTAGGGTTAGGGTTAGCGTCGAGTGGGAGTAGTCCTGATTCAAAAGAAGTGAGGGAGAGAGAAGGGATTCCTGAATTAGAAGATGAGACGGAACAGGAAACTGTGAAGGAGGTTCGTCATGAGGAGAAGAAGAAGAAAGTGGCAGAGGAAGTGGAGAAAGAAAAGGAAGAGGTTGTTAAGGGTGGAGATTTTGGTGAAGGTACTTCGAATTCGAAGGAAGTGCCATTGCAACAGGTGAGTAGTAGTGAGGGAAGTTCCAAAACGGTGCGGTTTCATAGTAGCGAAGGTAGTGGTGATTCGATTTCTTCTAGTGAAAAATTGAGTCCTGATAATGTTGTTCCTAAAGGATCTCCTCCTAGAAAGAAAGGGGTGAGTTTTGAGATTGAGGGTGATGAAGATGCGACGGTTACAACAGTAGAGGTTGATGGTGAATCTTCTATGTTGAGTAGCTTAAGCACTTTGTCTCCACATGGAACTAGGGATCTAAAAGAGGTTGTTAGGGAAATTAGAGATGAGTTTGAGACTGCTTCTAATCATGGAAGAGAGGTTGCATTTCTTCTCGAGGTTTACAAACCACCTTATCAGTCAAGACTTGCTGCATTTAGAGTTTTGTGCTTCAAGAAAATGCAGTTGCAGTTTGATTTGAAGGATGAAGAGAGGTTAAGAGCTATTTATGAGAAGCAATGCAAGAGATTGAAAGCATTGGATAATCGAGGAGCCGAAGCTACTAAAATTGATGCTACTGAGTCATCAATACGAAAGTTGCTAACAAAGATAAACATTTGCATCAAAAGTGTTGAAACTATATCAGGGAGGATACATAAACTGAGGGATGAAGAATTAGAGCCTCAGCTTGCAGCATTAATTAATGGGTATGAAATTGCTTCACTTATTCACTACTATGTTAATATTCATCTCCTATTGATAAGAATGTGGAAATTCATGTTCCAATGCCACCAGAAACAGTTCCAGGCTATCATGGAGAGTAAAACTCAATCTCTCAAATTAAACACTGGTTTGCAAAGAGATGAAGGTTTGAAAGCCATTATAGAACTTGAAAGGGAGCTTCTGAATTGGTGCACACAGTTCAACAATTGGGTCAGGACTCAAAAATCTTATGTTGAAAATTTGAATGGGTGGCTCAGAAGGTGCCTTCTTGATGAACCTGAAGAAACAGATGATGGTGTTGCCCCTTACTCTCCAAGTCGGATTGGAGCTCCGCAAGCTTTCATTATCTGCAATGATTGGCAGCAAGCAATGAATAGAATTTCAGAAAGAGGGGTGGCAGATGCTATGGGCGAATTTGCTCAAAAGCTGCATGAGCTATGGGAGAAACAAGATGAGGAACAAAGGCGGAAAATCAGGGCAGAGTATCTCACAAAGGATTTTGAGAAACAACTTAGAGCTTTGCGCACCGAAATGGGAGCCTCAAAACACGAGCATGACAAAGTTTCAGGGAAGACTTCATTGTCGAAGTTCAATTCTGATAGTGGTGTTTCGCCACTGGATGATCTAAAGGTGGATTTAGATTCTATGAAGAAGAAATTGCATGATGAGAGGGCCAAACATAAGGAAGCCATTAGGCTTGTCCGTGATGCAGCTTCTAATAGTTTACAAACTGGTTTGGTTCCCATTTTTAAGACCTTAGAAAGTTTCACTTCAGAGGTGGTGAAAGCTCATGAGGAAGTCAGACTTCAAAATGCTGCAGCCTCGTAG
Protein sequence

>Msa0374310

MGCGGSKLEEFPVVTLCRERKNFLKNASDQRYALAAAHLSYLQSLRDIGEALRRFSDQDLFLPTGSTPSSSSISSPVLTLPSREGKSSKNSSNHHDDHDLEYDDDSHLNLSSGSELSSPSSDHVHHHQHEHRTPEAESEPEREQEQERGFEYGHEPQYEHQPEPSSSYGYNYPYPYPYQQDWNQNQPGVNSYAYYMKKSAPRGKSVIYQEPERHVAESGQWTGSPYGGYGYNGMNGGNSGFFGFPAGPSTPAPPPPAPAPPSPPRVSTWDFLNFFESVDNNNYSGYGSYGLGLGLASSGSSPDSKEVREREGIPELEDETEQETVKEVRHEEKKKKVAEEVEKEKEEVVKGGDFGEGTSNSKEVPLQQVSSSEGSSKTVRFHSSEGSGDSISSSEKLSPDNVVPKGSPPRKKGVSFEIEGDEDATVTTVEVDGESSMLSSLSTLSPHGTRDLKEVVREIRDEFETASNHGREVAFLLEVYKPPYQSRLAAFRVLCFKKMQLQFDLKDEERLRAIYEKQCKRLKALDNRGAEATKIDATESSIRKLLTKINICIKSVETISGRIHKLRDEELEPQLAALINGYEIASLIHYYVNIHLLLIRMWKFMFQCHQKQFQAIMESKTQSLKLNTGLQRDEGLKAIIELERELLNWCTQFNNWVRTQKSYVENLNGWLRRCLLDEPEETDDGVAPYSPSRIGAPQAFIICNDWQQAMNRISERGVADAMGEFAQKLHELWEKQDEEQRRKIRAEYLTKDFEKQLRALRTEMGASKHEHDKVSGKTSLSKFNSDSGVSPLDDLKVDLDSMKKKLHDERAKHKEAIRLVRDAASNSLQTGLVPIFKTLESFTSEVVKAHEEVRLQNAAAS*