AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0931400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0931400 MtrunA17_Chr3g0124841 82.581 930 70 14 1 861 1 907 0.0 1253
Msa0931400 MtrunA17_Chr5g0448571 33.259 448 211 7 448 850 352 756 2.11e-65 233
Msa0931400 MtrunA17_Chr5g0448571 54.237 59 27 0 1 59 1 59 4.24e-13 73.2
Msa0931400 MtrunA17_Chr3g0130761 29.106 615 287 13 303 860 259 781 5.50e-61 221
Msa0931400 MtrunA17_Chr3g0143731 29.659 381 204 5 484 856 358 682 1.56e-44 171
Msa0931400 MtrunA17_Chr4g0072011 27.003 574 297 13 237 739 140 662 9.23e-40 157
Msa0931400 MtrunA17_Chr4g0052471 79.775 89 15 1 497 585 110 195 3.48e-38 141
Msa0931400 MtrunA17_Chr4g0052471 90.909 44 4 0 451 494 5 48 1.25e-19 87.8
Msa0931400 MtrunA17_Chr1g0211271 27.298 359 225 6 504 853 388 719 6.85e-36 145
Msa0931400 MtrunA17_Chr7g0250681 24.891 458 263 10 450 853 405 835 4.86e-32 134
Msa0931400 MtrunA17_Chr2g0298171 33.065 248 137 5 500 736 639 868 2.82e-30 129
Msa0931400 MtrunA17_Chr5g0405741 24.370 357 235 6 500 853 307 631 2.85e-30 127
Msa0931400 MtrunA17_Chr8g0335341 23.689 553 311 12 367 853 208 715 2.95e-29 124
Msa0931400 MtrunA17_Chr3g0118401 28.185 259 167 4 492 749 452 692 3.20e-29 125
Msa0931400 MtrunA17_Chr3g0118401 45.946 74 34 1 1 68 1 74 1.71e-11 68.2
Msa0931400 MtrunA17_Chr5g0440551 28.163 245 152 4 500 740 443 667 1.14e-27 120
Msa0931400 MtrunA17_Chr5g0440551 44.872 78 39 1 1 74 1 78 7.16e-12 69.3
Msa0931400 MtrunA17_Chr3g0139411 22.590 363 257 5 492 854 363 701 5.98e-22 101
Msa0931400 MtrunA17_Chr8g0382541 35.359 181 93 6 566 743 1 160 2.12e-20 91.3
Msa0931400 MtrunA17_Chr2g0331821 21.585 366 258 7 492 853 408 748 2.32e-19 93.6
Msa0931400 MtrunA17_Chr2g0303521 26.703 367 211 14 505 858 313 634 3.04e-18 89.7
Msa0931400 MtrunA17_Chr8g0382551 41.975 81 42 1 1 76 1 81 1.50e-12 70.9
Msa0931400 MtrunA17_Chr4g0004471 20.912 373 250 9 492 855 212 548 5.56e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0931400 AT1G21740.1 46.389 983 361 29 1 856 1 944 0.0 678
Msa0931400 AT1G77500.1 45.568 959 343 21 1 861 1 878 0.0 622
Msa0931400 AT4G35240.4 31.818 924 462 23 1 853 1 827 1.04e-93 313
Msa0931400 AT4G35240.3 31.818 924 462 23 1 853 1 827 1.04e-93 313
Msa0931400 AT4G35240.2 31.818 924 462 23 1 853 1 827 1.15e-93 314
Msa0931400 AT4G35240.1 31.818 924 462 23 1 853 1 827 1.15e-93 314
Msa0931400 AT2G17110.1 35.043 351 176 4 500 850 414 712 4.07e-55 204
Msa0931400 AT2G17110.1 54.545 55 25 0 1 55 1 55 1.20e-11 68.9
Msa0931400 AT5G54480.1 28.169 355 204 5 500 853 411 715 4.21e-39 155
Msa0931400 AT3G51290.3 25.143 350 228 4 504 853 306 621 3.11e-32 134
Msa0931400 AT3G51290.2 25.706 354 229 5 500 853 302 621 4.62e-32 134
Msa0931400 AT1G02110.1 24.439 446 257 10 450 844 270 686 3.02e-30 128
Msa0931400 AT1G20530.1 28.771 358 183 9 451 763 232 562 4.95e-29 124
Msa0931400 AT3G51290.1 24.286 350 225 4 504 853 306 615 6.66e-29 123
Msa0931400 AT4G39790.1 29.536 237 151 1 500 736 386 606 1.37e-28 122
Msa0931400 AT2G27090.2 27.823 248 160 3 500 746 439 668 5.69e-28 121
Msa0931400 AT2G27090.2 45.946 74 34 1 1 68 1 74 1.56e-11 68.6
Msa0931400 AT2G27090.1 27.823 248 160 3 500 746 439 668 5.69e-28 121
Msa0931400 AT2G27090.1 45.946 74 34 1 1 68 1 74 1.56e-11 68.6
Msa0931400 AT4G30130.3 27.158 556 305 18 237 739 133 641 6.82e-28 120
Msa0931400 AT4G30130.1 27.158 556 305 18 237 739 133 641 6.82e-28 120
Msa0931400 AT3G60320.1 23.566 488 288 12 422 853 330 788 9.39e-28 120
Msa0931400 AT2G19090.1 29.323 266 143 5 492 739 486 724 4.05e-25 112
Msa0931400 AT5G25590.1 22.222 459 275 9 451 855 330 760 1.95e-21 100
Msa0931400 AT1G52320.1 21.813 353 244 8 492 839 414 739 3.82e-17 87.0
Msa0931400 AT2G34670.2 22.905 358 231 8 505 853 353 674 4.44e-17 86.7
Msa0931400 AT1G52320.2 21.813 353 244 8 492 839 437 762 7.39e-17 85.9
Msa0931400 AT1G52320.5 21.813 353 244 8 492 839 437 762 7.39e-17 85.9
Msa0931400 AT1G52320.3 21.813 353 244 8 492 839 111 436 3.08e-15 79.7
Msa0931400 AT1G52320.4 21.813 353 244 8 492 839 111 436 3.08e-15 79.7
Msa0931400 AT4G30130.4 28.792 389 219 13 237 588 133 500 1.09e-11 68.9
Msa0931400 AT4G30130.2 28.792 389 219 13 237 588 133 500 1.09e-11 68.9

Find 279 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAGCCTGGAACTGTTTC+TGG 0.194296 6_2:+80831536 None:intergenic
AAACTCACCCCTTTCTTTCT+AGG 0.194413 6_2:+80833776 None:intergenic
CACGAGCATGACAAAGTTTC+AGG 0.222711 6_2:-80831058 Msa0931400:CDS
TCTCATTTGAATCTTTCTTC+TGG 0.225408 6_2:-80834685 Msa0931400:CDS
CAGCTTGCAGCATTAATTAA+TGG 0.228181 6_2:-80832231 Msa0931400:CDS
GGTTCTCCTTATGGTGGTTA+TGG 0.230280 6_2:-80834334 Msa0931400:CDS
GACTGTAGATTGGGTGTTAC+AGG 0.233168 6_2:+80830609 None:intergenic
TGATTCCAATCTTGTTGATA+TGG 0.253430 6_2:+80834472 None:intergenic
GTTGACAATAATAATTATTC+TGG 0.253727 6_2:-80834169 Msa0931400:CDS
ATTAACTCTAGCTGCAAAAT+TGG 0.254729 6_2:+80830749 None:intergenic
GAAGAGGTTGTGTTTGTTAC+TGG 0.258512 6_2:+80835198 None:intergenic
AATAATAATTATTCTGGTTA+TGG 0.263471 6_2:-80834163 Msa0931400:CDS
TCAAGACTTGCTGCATTTAG+AGG 0.270388 6_2:-80833545 Msa0931400:intron
GGGATCTAAAAGAGGTTGTT+AGG 0.275615 6_2:-80833652 Msa0931400:CDS
CAATCTTGTTGATATGGATA+TGG 0.277701 6_2:+80834478 None:intergenic
CTCCCTTTCAAGTTCTATAA+TGG 0.279518 6_2:+80831450 None:intergenic
ACTATGAAACCGCACCGTTT+TGG 0.283793 6_2:+80833874 None:intergenic
TCCGTCTCATCTTCTAATTC+AGG 0.285195 6_2:+80834061 None:intergenic
GTGGAATAATAATACTAAAA+TGG 0.291431 6_2:+80835130 None:intergenic
AAAAGTGTTGAAACTATATC+AGG 0.292364 6_2:-80832291 Msa0931400:CDS
GGTTATGGAAGTTATGGATT+AGG 0.294831 6_2:-80834148 Msa0931400:CDS
GGAGCCGGAGCCGGCGGAGG+CGG 0.296226 6_2:+80834244 None:intergenic
TCTTGTTCTTGTTCTCGTTC+AGG 0.303268 6_2:+80834583 None:intergenic
CCTAATGGCTTCCTTATGTT+TGG 0.304816 6_2:+80830931 None:intergenic
TATTCTGGTTATGGAAGTTA+TGG 0.304828 6_2:-80834154 Msa0931400:CDS
GGAGTATATAGTTAGGAAAT+TGG 0.312716 6_2:+80835505 None:intergenic
TTTCTAGGAGGAGATCCTTT+AGG 0.318934 6_2:+80833791 None:intergenic
GTTATGGAAGTTATGGATTA+GGG 0.320121 6_2:-80834147 Msa0931400:CDS
AGGAACAAAGGCGGAAAATC+AGG 0.327990 6_2:-80831150 Msa0931400:CDS
GGAAGTTATGGATTAGGGTT+AGG 0.329740 6_2:-80834142 Msa0931400:CDS
GTTCTCCTTATGGTGGTTAT+GGG 0.330786 6_2:-80834333 Msa0931400:CDS
TTTGCATTTGCATTTGCATT+TGG 0.331122 6_2:+80835563 None:intergenic
CAATGGACTGGTTCTCCTTA+TGG 0.331408 6_2:-80834343 Msa0931400:CDS
ACACCATCATCTGTTTCTTC+AGG 0.331566 6_2:+80831328 None:intergenic
TAGAGCTTTGCGCACCGAAA+TGG 0.331955 6_2:-80831092 Msa0931400:CDS
CCTTTAGGAACAACATTATC+AGG 0.332468 6_2:+80833806 None:intergenic
GAGAGACACGTGGCGGAATC+TGG 0.345695 6_2:-80834367 Msa0931400:CDS
TGCGCCGCCTCCGCCGGCTC+CGG 0.347174 6_2:-80834248 Msa0931400:CDS
TGTTGATATGGATATGGATA+TGG 0.347686 6_2:+80834484 None:intergenic
AGCTTGCAGCATTAATTAAT+GGG 0.348005 6_2:-80832230 Msa0931400:CDS
GTTGTTAAGGGTGGAGATTT+TGG 0.350423 6_2:-80833959 Msa0931400:CDS
GAAGAAAGTGGCAGAGGAAG+TGG 0.352265 6_2:-80833999 Msa0931400:CDS
AGTTTCAGCAACTAAAGCTT+TGG 0.356209 6_2:-80830671 Msa0931400:three_prime_UTR
AGAAAAGGAAGAGGTTGTTA+AGG 0.362522 6_2:-80833972 Msa0931400:CDS
CAAGAAAGAGGATTTGAATA+TGG 0.364165 6_2:-80834565 Msa0931400:CDS
GCAGTTGCAGTTTGATTTGA+AGG 0.368463 6_2:-80833306 Msa0931400:intron
GGAGCCGGCGGAGGCGGCGC+AGG 0.371955 6_2:+80834250 None:intergenic
TTCATTTATTTATTGATTGT+AGG 0.380009 6_2:-80830563 Msa0931400:three_prime_UTR
TACGCCTGCGCCGCCTCCGC+CGG 0.382792 6_2:-80834254 Msa0931400:CDS
AGATGGATCGTGGATCGATT+TGG 0.383055 6_2:+80835293 None:intergenic
TATGGTGGTTATGGGTATAA+TGG 0.383537 6_2:-80834325 Msa0931400:CDS
CACCACCGAGAGTTTCTACT+TGG 0.383628 6_2:-80834216 Msa0931400:CDS
CCGAACCATCTTCTTCTTAC+GGG 0.385216 6_2:-80834516 Msa0931400:CDS
CACGGGGAACTCCTCCAGTT+TGG 0.386880 6_2:+80834984 None:intergenic
TGAGATTTAGATTTAAGAAA+AGG 0.388460 6_2:+80835401 None:intergenic
TTCTTGTTCTCGTTCAGGTT+CGG 0.391928 6_2:+80834588 None:intergenic
GGAACTGTTTCTGGTGGCAT+TGG 0.392548 6_2:+80831545 None:intergenic
GGAGGCGGCGCAGGCGTAGA+AGG 0.400533 6_2:+80834259 None:intergenic
CGGATTCAGCCTCGGGTGTT+CGG 0.402108 6_2:+80834608 None:intergenic
CCCGTAAGAAGAAGATGGTT+CGG 0.403321 6_2:+80834516 None:intergenic
CCCGAACCATCTTCTTCTTA+CGG 0.406997 6_2:-80834517 Msa0931400:CDS
GGTGGAGCCGGAGCCGGCGG+AGG 0.407665 6_2:+80834241 None:intergenic
CTTTCATTATCTGCAATGAT+TGG 0.408806 6_2:-80831267 Msa0931400:CDS
GGCATAGAGATTGGTGATGT+TGG 0.409760 6_2:+80835460 None:intergenic
CGAGAAGGCAATGTGAGAAC+AGG 0.414014 6_2:+80834775 None:intergenic
CATATCCATATCAACAAGAT+TGG 0.414946 6_2:-80834477 Msa0931400:CDS
TAATAGTTTACAAACTGGTT+TGG 0.416201 6_2:-80830888 Msa0931400:CDS
CCAATCCGACTTGGAGAGTA+AGG 0.417005 6_2:+80831301 None:intergenic
CTTTGTCTCCACATGGAACT+AGG 0.419464 6_2:-80833673 Msa0931400:CDS
ATGCCACCAGAAACAGTTCC+AGG 0.420200 6_2:-80831542 Msa0931400:CDS
GTTTCAGCAACTAAAGCTTT+GGG 0.420405 6_2:-80830670 Msa0931400:three_prime_UTR
TTGAAAGGGAGCTTCTGAAT+TGG 0.420884 6_2:-80831438 Msa0931400:CDS
TTCAGGTTCGGATTCAGCCT+CGG 0.423908 6_2:+80834600 None:intergenic
TGTTGTTGGAGTATATAGTT+AGG 0.424558 6_2:+80835498 None:intergenic
AAGAAGTGAGGGAGAGAGAA+GGG 0.424841 6_2:-80834087 Msa0931400:CDS
GGTGAAGGTGGAGCCGGAGC+CGG 0.424911 6_2:+80834235 None:intergenic
AGATTCCGCCACGTGTCTCT+CGG 0.425616 6_2:+80834369 None:intergenic
ATGAATAGAATTTCAGAAAG+AGG 0.426192 6_2:-80831235 Msa0931400:CDS
TATGGGTATAATGGTATGAA+TGG 0.427326 6_2:-80834316 Msa0931400:CDS
GGTGCACACAGTTCAACAAT+TGG 0.428625 6_2:-80831417 Msa0931400:CDS
GAAGTTATGGATTAGGGTTA+GGG 0.428805 6_2:-80834141 Msa0931400:CDS
CTCTGAAGTGAAACTTTCTA+AGG 0.429224 6_2:+80830850 None:intergenic
TCTTATGTTGAAAATTTGAA+TGG 0.431188 6_2:-80831379 Msa0931400:CDS
AGAGCTTTGCGCACCGAAAT+GGG 0.431764 6_2:-80831091 Msa0931400:CDS
TTTGAGACTGCTTCTAATCA+TGG 0.432301 6_2:-80833614 Msa0931400:CDS
TCGGGTTGGTGTTCGTATTG+AGG 0.433025 6_2:+80834535 None:intergenic
GAAGGAAGTGCCATTGCAAC+AGG 0.435586 6_2:-80833918 Msa0931400:CDS
GATCTGTAAATTGTTGTTGT+TGG 0.437109 6_2:+80835484 None:intergenic
CTCAAAAGCTGCATGAGCTA+TGG 0.438860 6_2:-80831186 Msa0931400:CDS
AGCATAATGAAGGAAAGAAA+TGG 0.441070 6_2:+80835072 None:intergenic
TCGAAGTTCAATTCTGATAG+TGG 0.442059 6_2:-80831022 Msa0931400:CDS
AAGAGGTTGTGTTTGTTACT+GGG 0.442183 6_2:+80835199 None:intergenic
AAGAGGGGTGGCAGATGCTA+TGG 0.442230 6_2:-80831218 Msa0931400:CDS
TTTGCAGCTAGAGTTAATCT+TGG 0.445326 6_2:-80830744 Msa0931400:three_prime_UTR
GAAGAAGAAGAAAGTGGCAG+AGG 0.447265 6_2:-80834005 Msa0931400:CDS
TGTAAATTAACATGGGCTGC+GGG 0.449614 6_2:-80835011 Msa0931400:exon
GCATAGAGATTGGTGATGTT+GGG 0.455238 6_2:+80835461 None:intergenic
TTTGTGGTGTTGTTGAGAAA+TGG 0.457183 6_2:+80835048 None:intergenic
TTTGAATCTTTCTTCTGGAT+CGG 0.458184 6_2:-80834680 Msa0931400:CDS
TCAGGTTCGGATTCAGCCTC+GGG 0.458879 6_2:+80834601 None:intergenic
GGATCTCCTCCTAGAAAGAA+AGG 0.460253 6_2:-80833785 Msa0931400:CDS
CTCGGTGGTGAAGGTGGAGC+CGG 0.465082 6_2:+80834229 None:intergenic
CCGTAAGAAGAAGATGGTTC+GGG 0.466321 6_2:+80834517 None:intergenic
CCTGATAATGTTGTTCCTAA+AGG 0.466850 6_2:-80833806 Msa0931400:CDS
ATTAGAAGATGAGACGGAAC+AGG 0.466915 6_2:-80834056 Msa0931400:CDS
ACTGGTTTGCAAAGAGATGA+AGG 0.467754 6_2:-80831481 Msa0931400:CDS
GAAAAGGAAGAGGTTGTTAA+GGG 0.470149 6_2:-80833971 Msa0931400:CDS
GCTTCTAATAGTTTACAAAC+TGG 0.474058 6_2:-80830893 Msa0931400:CDS
TGATAGTGGTGTTTCGCCAC+TGG 0.474624 6_2:-80831008 Msa0931400:CDS
AGGGAAAATGGCATAGAGAT+TGG 0.481322 6_2:+80835451 None:intergenic
TGATGAGAGGGCCAAACATA+AGG 0.481807 6_2:-80830942 Msa0931400:CDS
TAGAGTTAATCTTGGTATGT+AGG 0.481953 6_2:-80830736 Msa0931400:three_prime_UTR
AAAGAAGTGAGGGAGAGAGA+AGG 0.482867 6_2:-80834088 Msa0931400:CDS
AAGCCATTATAGAACTTGAA+AGG 0.483499 6_2:-80831453 Msa0931400:CDS
CGACAAATTGTAAATTAACA+TGG 0.483870 6_2:-80835019 Msa0931400:exon
TGCATCACGGACAAGCCTAA+TGG 0.484621 6_2:+80830916 None:intergenic
GAGTGAAATCTGACCGTTGA+TGG 0.485438 6_2:+80835262 None:intergenic
TTTCTTCAGGTTCATCAAGA+AGG 0.487287 6_2:+80831341 None:intergenic
AACTCTAGCTGCAAAATTGG+TGG 0.487478 6_2:+80830752 None:intergenic
CAGTTCAGTGAGGGTAATAG+TGG 0.499151 6_2:+80835111 None:intergenic
TACTAAAATGGAAGCAGCAT+GGG 0.501036 6_2:+80835142 None:intergenic
TGAATAGAATTTCAGAAAGA+GGG 0.501325 6_2:-80831234 Msa0931400:CDS
AAGGAAGAGGTTGTTAAGGG+TGG 0.503136 6_2:-80833968 Msa0931400:CDS
GGTATGAATGGAGGTAATAG+TGG 0.503648 6_2:-80834304 Msa0931400:CDS
ATTTGAATGGGTGGCTCAGA+AGG 0.504891 6_2:-80831366 Msa0931400:CDS
TCAAAAGCTGCATGAGCTAT+GGG 0.507138 6_2:-80831185 Msa0931400:CDS
GAAGAAATTGAAGAAGAAGA+AGG 0.507803 6_2:+80834799 None:intergenic
AGAGGAAGTGGAGAAAGAAA+AGG 0.507961 6_2:-80833987 Msa0931400:CDS
TGCGGAGCTCCAATCCGACT+TGG 0.511426 6_2:+80831292 None:intergenic
GCTTTGGGTGTGTAAACGTC+AGG 0.511721 6_2:-80830655 Msa0931400:three_prime_UTR
GGAAAGAAATGGAAGAAAGA+TGG 0.512909 6_2:+80835083 None:intergenic
AGTGGAGAAAGAAAAGGAAG+AGG 0.513148 6_2:-80833981 Msa0931400:CDS
CCTTACTCTCCAAGTCGGAT+TGG 0.513152 6_2:-80831301 Msa0931400:CDS
GATCTCCTCCTAGAAAGAAA+GGG 0.513989 6_2:-80833784 Msa0931400:CDS
GTGCACACAGTTCAACAATT+GGG 0.515126 6_2:-80831416 Msa0931400:CDS
GAAACAGTTCCAGGCTATCA+TGG 0.515239 6_2:-80831533 Msa0931400:CDS
AGCCATTATAGAACTTGAAA+GGG 0.515704 6_2:-80831452 Msa0931400:CDS
CTTAGAAAGTTTCACTTCAG+AGG 0.516214 6_2:-80830849 Msa0931400:CDS
CCAAACATAAGGAAGCCATT+AGG 0.516949 6_2:-80830931 Msa0931400:CDS
GTGAAAATTAGTGAAGGAAA+AGG 0.518538 6_2:+80835235 None:intergenic
GATTCCGCCACGTGTCTCTC+GGG 0.519830 6_2:+80834370 None:intergenic
CACAGTTCAACAATTGGGTC+AGG 0.519909 6_2:-80831411 Msa0931400:CDS
GGATCTAAAAGAGGTTGTTA+GGG 0.519957 6_2:-80833651 Msa0931400:CDS
GGCGAGAGCGTAACGTTGAT+CGG 0.521112 6_2:+80834918 None:intergenic
CTACTACTCACCTGTTGCAA+TGG 0.521870 6_2:+80833908 None:intergenic
CTCACATTGCCTTCTCGTGA+AGG 0.524220 6_2:-80834769 Msa0931400:CDS
GAAGGTGGAGCCGGAGCCGG+CGG 0.524547 6_2:+80834238 None:intergenic
CTTATGTTGAAAATTTGAAT+GGG 0.525221 6_2:-80831378 Msa0931400:CDS
ATGCAAGAGATTGAAAGCAT+TGG 0.527869 6_2:-80832397 Msa0931400:CDS
CGAGAACAAGAACAAGAAAG+AGG 0.531310 6_2:-80834577 Msa0931400:CDS
TTGTAAATTAACATGGGCTG+CGG 0.536115 6_2:-80835012 Msa0931400:exon
GTTACAACAGTAGAGGTTGA+TGG 0.539166 6_2:-80833725 Msa0931400:CDS
TTCGCCACTGGATGATCTAA+AGG 0.539779 6_2:-80830996 Msa0931400:CDS
GTAGAAACTCTCGGTGGTGA+AGG 0.541943 6_2:+80834220 None:intergenic
GAGAAATGGAAGCATAATGA+AGG 0.542341 6_2:+80835062 None:intergenic
CTCACCCCTTTCTTTCTAGG+AGG 0.547699 6_2:+80833779 None:intergenic
CTGCAGCCTCGTAGAGAACA+TGG 0.549697 6_2:-80830790 Msa0931400:exon
GCAGCAAGTCTTGACTGATA+AGG 0.550165 6_2:+80833554 None:intergenic
TGTACTCTGAACTCAATCCT+TGG 0.551084 6_2:-80835351 Msa0931400:five_prime_UTR
CCTCTTAAAACTCTCTGAAG+AGG 0.552545 6_2:-80830707 Msa0931400:three_prime_UTR
GAGGATTTACCTTCACGAGA+AGG 0.553408 6_2:+80834760 None:intergenic
TTTGTCTCCACATGGAACTA+GGG 0.554562 6_2:-80833672 Msa0931400:CDS
ACGAGCATGACAAAGTTTCA+GGG 0.557309 6_2:-80831057 Msa0931400:CDS
TCCTGAATTAGAAGATGAGA+CGG 0.558744 6_2:-80834062 Msa0931400:CDS
ATCGTGGATCGATTTGGAAG+GGG 0.559041 6_2:+80835299 None:intergenic
GGTTGTGTTTGTTACTGGGA+GGG 0.559165 6_2:+80835203 None:intergenic
TCGTGGATCGATTTGGAAGG+GGG 0.561225 6_2:+80835300 None:intergenic
CAATCTCTCAAATTAAACAC+TGG 0.563399 6_2:-80831499 Msa0931400:CDS
TTAATTAATGCTGCAAGCTG+AGG 0.567648 6_2:+80832234 None:intergenic
GAAGAAATTGCATGATGAGA+GGG 0.568060 6_2:-80830954 Msa0931400:CDS
TCCTGATTCAAAAGAAGTGA+GGG 0.568796 6_2:-80834098 Msa0931400:CDS
GAAACTCTCGGTGGTGAAGG+TGG 0.570393 6_2:+80834223 None:intergenic
CAACAGGTGAGTAGTAGTGA+GGG 0.571312 6_2:-80833902 Msa0931400:CDS
GAAGAAGGAGTAGAACCAGT+TGG 0.571423 6_2:+80834814 None:intergenic
TTATACCCATAACCACCATA+AGG 0.575087 6_2:+80834328 None:intergenic
GGTGTGTAAACGTCAGGACA+TGG 0.578226 6_2:-80830649 Msa0931400:three_prime_UTR
AGAGGGGTGGCAGATGCTAT+GGG 0.579128 6_2:-80831217 Msa0931400:CDS
GCGGAATCTGGACAATGGAC+TGG 0.581256 6_2:-80834355 Msa0931400:CDS
GGGTTAGGGTTAGCGTCGAG+TGG 0.581567 6_2:-80834127 Msa0931400:CDS
TGTTAATTTACAATTTGTCG+TGG 0.581922 6_2:+80835022 None:intergenic
CGTTGATGGGTGAATAGAGA+TGG 0.582930 6_2:+80835276 None:intergenic
TTATACCCGTAAGAAGAAGA+TGG 0.583571 6_2:+80834511 None:intergenic
TAAATTAACATGGGCTGCGG+GGG 0.584717 6_2:-80835009 Msa0931400:exon
ACTCAAGATCATGATCATCA+TGG 0.585920 6_2:+80834719 None:intergenic
GTAACACCCAATCTACAGTC+AGG 0.590215 6_2:-80830606 Msa0931400:three_prime_UTR
AGAGGTTGCATTTCTTCTCG+AGG 0.590287 6_2:-80833588 Msa0931400:CDS
TGGAACTAGGGATCTAAAAG+AGG 0.591949 6_2:-80833660 Msa0931400:CDS
GGGTATAATGGTATGAATGG+AGG 0.592051 6_2:-80834313 Msa0931400:CDS
GACAAATTGTAAATTAACAT+GGG 0.594367 6_2:-80835018 Msa0931400:exon
GTCCTGATTCAAAAGAAGTG+AGG 0.595426 6_2:-80834099 Msa0931400:CDS
TGCTTCTAATCATGGAAGAG+AGG 0.596147 6_2:-80833606 Msa0931400:CDS
TTCTCTGCAAAGAGTTACCA+CGG 0.598360 6_2:+80834966 None:intergenic
GTAAATTAACATGGGCTGCG+GGG 0.598567 6_2:-80835010 Msa0931400:exon
TGAAGGTACTTCGAATTCGA+AGG 0.599893 6_2:-80833936 Msa0931400:CDS
TTTCATAGTAGCGAAGGTAG+TGG 0.601039 6_2:-80833860 Msa0931400:CDS
GCAAGTCTTGACTGATAAGG+TGG 0.601503 6_2:+80833557 None:intergenic
AGAAAGTTTCACTTCAGAGG+TGG 0.603559 6_2:-80830846 Msa0931400:CDS
GGAACAAAGGCGGAAAATCA+GGG 0.603888 6_2:-80831149 Msa0931400:CDS
ATGTTGAAAATTTGAATGGG+TGG 0.604696 6_2:-80831375 Msa0931400:CDS
AAAGTGTTGAAACTATATCA+GGG 0.605560 6_2:-80832290 Msa0931400:CDS
TGTGAAGGAGGTTCGTCATG+AGG 0.607752 6_2:-80834029 Msa0931400:CDS
GTATATAGTTAGGAAATTGG+TGG 0.607953 6_2:+80835508 None:intergenic
TTGCCCCTTACTCTCCAAGT+CGG 0.608240 6_2:-80831306 Msa0931400:CDS
TAAGCATAACTATTAACCCC+TGG 0.609549 6_2:+80834442 None:intergenic
GGTTAGGGTTAGCGTCGAGT+GGG 0.610372 6_2:-80834126 Msa0931400:CDS
TGAGGAGAAGAAGAAGAAAG+TGG 0.610426 6_2:-80834011 Msa0931400:CDS
TTACAGTCTCTCAGAGACAT+CGG 0.611826 6_2:-80834877 Msa0931400:CDS
TCAGCAGATTGATAAGAATG+TGG 0.613642 6_2:-80831579 Msa0931400:intron
GTGCGGTTTCATAGTAGCGA+AGG 0.615348 6_2:-80833866 Msa0931400:CDS
GATTGGAATCAAAATCAACC+AGG 0.615492 6_2:-80834460 Msa0931400:CDS
AAATCCCAAGTAGAAACTCT+CGG 0.615723 6_2:+80834211 None:intergenic
AGGGAGGATACATAAACTGA+GGG 0.617129 6_2:-80832271 Msa0931400:CDS
AGAGGTGGTGAAAGCTCATG+AGG 0.617745 6_2:-80830831 Msa0931400:CDS
AGGTTGTGTTTGTTACTGGG+AGG 0.618221 6_2:+80835202 None:intergenic
GCCACTGGATGATCTAAAGG+TGG 0.618305 6_2:-80830993 Msa0931400:CDS
AGAAGAAATTGCATGATGAG+AGG 0.619702 6_2:-80830955 Msa0931400:CDS
ATACTAAAATGGAAGCAGCA+TGG 0.620596 6_2:+80835141 None:intergenic
AATCCGACTTGGAGAGTAAG+GGG 0.620758 6_2:+80831303 None:intergenic
CAATCCGACTTGGAGAGTAA+GGG 0.621439 6_2:+80831302 None:intergenic
GATCGTGGATCGATTTGGAA+GGG 0.622369 6_2:+80835298 None:intergenic
TGAGGGTGATGAAGATGCGA+CGG 0.622626 6_2:-80833747 Msa0931400:CDS
TAGTGAGGGAAGTTCCAAAA+CGG 0.622761 6_2:-80833888 Msa0931400:CDS
GGATCGTGGATCGATTTGGA+AGG 0.623464 6_2:+80835297 None:intergenic
AACTATTAGAAGCTGCATCA+CGG 0.624613 6_2:+80830903 None:intergenic
GAGAAGGCAATGTGAGAACA+GGG 0.624709 6_2:+80834776 None:intergenic
TTTAGATCCCTAGTTCCATG+TGG 0.631482 6_2:+80833665 None:intergenic
TCTCTGCAAAGAGTTACCAC+GGG 0.632381 6_2:+80834967 None:intergenic
TGGACTGGTTCTCCTTATGG+TGG 0.633553 6_2:-80834340 Msa0931400:CDS
CATCTCTATTCACCCATCAA+CGG 0.634085 6_2:-80835275 Msa0931400:five_prime_UTR
ATCTCCTCCTAGAAAGAAAG+GGG 0.635205 6_2:-80833783 Msa0931400:CDS
ACCACCGAGAGTTTCTACTT+GGG 0.635604 6_2:-80834215 Msa0931400:CDS
GCAACAGGTGAGTAGTAGTG+AGG 0.636074 6_2:-80833903 Msa0931400:CDS
AACAAGATGAGGAACAAAGG+CGG 0.639484 6_2:-80831159 Msa0931400:CDS
TGATGAACATGATCTGAAGA+AGG 0.639709 6_2:+80834646 None:intergenic
AGTGAAATCTGACCGTTGAT+GGG 0.640019 6_2:+80835263 None:intergenic
GACGGAACAGGAAACTGTGA+AGG 0.640183 6_2:-80834044 Msa0931400:CDS
GAATAGAATTTCAGAAAGAG+GGG 0.641585 6_2:-80831233 Msa0931400:CDS
TTGAAAGCATTGGATAATCG+AGG 0.645643 6_2:-80832387 Msa0931400:CDS
CAGGGAGGATACATAAACTG+AGG 0.649011 6_2:-80832272 Msa0931400:CDS
AATTATAACAGAAAGAGCCA+AGG 0.649146 6_2:+80835334 None:intergenic
ATGGCTGTTCAGTTCAGTGA+GGG 0.649245 6_2:+80835102 None:intergenic
ACGTGGCGGAATCTGGACAA+TGG 0.649398 6_2:-80834360 Msa0931400:CDS
AAGAAGAAGATGGTTCGGGT+TGG 0.651087 6_2:+80834521 None:intergenic
CATAGAGATTGGTGATGTTG+GGG 0.651776 6_2:+80835462 None:intergenic
GAACCTGAAGAAACAGATGA+TGG 0.653790 6_2:-80831331 Msa0931400:CDS
AGAAACAAGATGAGGAACAA+AGG 0.658720 6_2:-80831162 Msa0931400:CDS
AAACGCGTGAAAATTAGTGA+AGG 0.665024 6_2:+80835229 None:intergenic
ATTGGAATCAAAATCAACCA+GGG 0.671756 6_2:-80834459 Msa0931400:CDS
TAGAATTTCAGAAAGAGGGG+TGG 0.673438 6_2:-80831230 Msa0931400:CDS
CGTGGATCGATTTGGAAGGG+GGG 0.674535 6_2:+80835301 None:intergenic
GGAAGCAGCATGGGAAAATG+TGG 0.675096 6_2:+80835151 None:intergenic
GGAACAGGAAACTGTGAAGG+AGG 0.675573 6_2:-80834041 Msa0931400:CDS
TTGCAGATAATGAAAGCTTG+CGG 0.678429 6_2:+80831274 None:intergenic
ACATGAACACCGAACACCCG+AGG 0.679265 6_2:-80834617 Msa0931400:CDS
GAGACATCGGAGAAGCTCTG+AGG 0.681296 6_2:-80834864 Msa0931400:CDS
TTAAGCACTTTGTCTCCACA+TGG 0.682460 6_2:-80833680 Msa0931400:CDS
TAGCCTGGAACTGTTTCTGG+TGG 0.687495 6_2:+80831539 None:intergenic
TGCGACGGTTACAACAGTAG+AGG 0.688026 6_2:-80833732 Msa0931400:CDS
ACTGTTCTCAGGATGAAGAG+AGG 0.689314 6_2:-80832443 Msa0931400:intron
ATGAAGAAATCTGCACCACG+TGG 0.690953 6_2:-80834415 Msa0931400:CDS
CAGGGCAGAGTATCTCACAA+AGG 0.692112 6_2:-80831131 Msa0931400:CDS
CAAGATCATGATCATCATGG+TGG 0.695629 6_2:+80834722 None:intergenic
TTGGAATCAAAATCAACCAG+GGG 0.695794 6_2:-80834458 Msa0931400:CDS
GCTATGGGAGAAACAAGATG+AGG 0.701488 6_2:-80831170 Msa0931400:CDS
GCAGGCGTAGAAGGTCCCGC+CGG 0.701500 6_2:+80834268 None:intergenic
AGGGAAGTTCCAAAACGGTG+CGG 0.705993 6_2:-80833883 Msa0931400:CDS
TCAAGAACCCGAGAGACACG+TGG 0.707419 6_2:-80834377 Msa0931400:CDS
GGGTGAATAGAGATGGATCG+TGG 0.710207 6_2:+80835283 None:intergenic
TCCACCTTTAGATCATCCAG+TGG 0.717641 6_2:+80830992 None:intergenic
GATGGCTGTTCAGTTCAGTG+AGG 0.724026 6_2:+80835101 None:intergenic
AGAAGGCAATGTGAGAACAG+GGG 0.739205 6_2:+80834777 None:intergenic
CTCTGCAAAGAGTTACCACG+GGG 0.744877 6_2:+80834968 None:intergenic
TAAATAAGAGAGATGCGCGG+CGG 0.749568 6_2:+80834897 None:intergenic
AATCGTCCATGTTCTCTACG+AGG 0.757312 6_2:+80830784 None:intergenic
CTGTAAATAAGAGAGATGCG+CGG 0.766271 6_2:+80834894 None:intergenic
GTGTTGAAACTATATCAGGG+AGG 0.772755 6_2:-80832287 Msa0931400:CDS
CAAACTGGAGGAGTTCCCCG+TGG 0.774000 6_2:-80834983 Msa0931400:CDS
AGAACCCGAGAGACACGTGG+CGG 0.780648 6_2:-80834374 Msa0931400:CDS
TCCCAAGTAGAAACTCTCGG+TGG 0.798985 6_2:+80834214 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAGATTAAAAAAAGA+GGG + chr6_2:80830687-80830706 None:intergenic 10.0%
!! AATAATAAGATTAAAAAAAG+AGG + chr6_2:80830688-80830707 None:intergenic 10.0%
!! ATAAATTAGTAAATATTGTA+CGG - chr6_2:80833612-80833631 Msa0931400:CDS 10.0%
!! TATTAATAATGAAGATTTAA+GGG + chr6_2:80834356-80834375 None:intergenic 10.0%
!! TTATTAATAATGAAGATTTA+AGG + chr6_2:80834357-80834376 None:intergenic 10.0%
!!! TTAATAATTATCATCATTTT+TGG - chr6_2:80834370-80834389 Msa0931400:CDS 10.0%
!!! AATAATAATTATTCTGGTTA+TGG - chr6_2:80831953-80831972 Msa0931400:intron 15.0%
!!! TTTGAAATTAGTTAAATGTT+AGG - chr6_2:80833323-80833342 Msa0931400:CDS 15.0%
!! TGACATGATATTAAAAAAAA+TGG + chr6_2:80833985-80834004 None:intergenic 15.0%
!!! TTCATTTATTTATTGATTGT+AGG - chr6_2:80835553-80835572 Msa0931400:five_prime_UTR 15.0%
!! TGAGATTTAGATTTAAGAAA+AGG + chr6_2:80830718-80830737 None:intergenic 20.0%
!! GTGGAATAATAATACTAAAA+TGG + chr6_2:80830989-80831008 None:intergenic 20.0%
!! GACAAATTGTAAATTAACAT+GGG - chr6_2:80831098-80831117 Msa0931400:CDS 20.0%
!! GTTGACAATAATAATTATTC+TGG - chr6_2:80831947-80831966 Msa0931400:intron 20.0%
!!! TTTCCTTTTTAGTTCTTTTT+TGG - chr6_2:80832605-80832624 Msa0931400:intron 20.0%
!! AATCCAAAAAAGAACTAAAA+AGG + chr6_2:80832611-80832630 None:intergenic 20.0%
!!! TTTTAGTTCTTTTTTGGATT+TGG - chr6_2:80832611-80832630 Msa0931400:intron 20.0%
!! ATATATGTTGAACTTTATGT+GGG - chr6_2:80832869-80832888 Msa0931400:intron 20.0%
!! ATGTAAATATTACTGTTTAC+AGG - chr6_2:80832970-80832989 Msa0931400:intron 20.0%
!!! AAATTAGTTACTTTATGCAT+GGG - chr6_2:80833258-80833277 Msa0931400:intron 20.0%
!! AACAACATAAATGTATGAAA+GGG + chr6_2:80833481-80833500 None:intergenic 20.0%
!! AAACAACATAAATGTATGAA+AGG + chr6_2:80833482-80833501 None:intergenic 20.0%
!! ACAAATAAGAACAATTTGAA+AGG + chr6_2:80833640-80833659 None:intergenic 20.0%
!!! ATTATCATCATTTTTGGTTT+TGG - chr6_2:80834376-80834395 Msa0931400:CDS 20.0%
!!! TTATCATCATTTTTGGTTTT+GGG - chr6_2:80834377-80834396 Msa0931400:CDS 20.0%
!! TCTTATGTTGAAAATTTGAA+TGG - chr6_2:80834737-80834756 Msa0931400:CDS 20.0%
!! CTTATGTTGAAAATTTGAAT+GGG - chr6_2:80834738-80834757 Msa0931400:CDS 20.0%
! GATTAAAAAAAGAGGGAAAA+TGG + chr6_2:80830680-80830699 None:intergenic 25.0%
! TGTTAATTTACAATTTGTCG+TGG + chr6_2:80831097-80831116 None:intergenic 25.0%
! CGACAAATTGTAAATTAACA+TGG - chr6_2:80831097-80831116 Msa0931400:CDS 25.0%
! AACATTAAGCAATAGGATAA+GGG - chr6_2:80832718-80832737 Msa0931400:intron 25.0%
! CATATATGTTGAACTTTATG+TGG - chr6_2:80832868-80832887 Msa0931400:intron 25.0%
! CTCTATACTATCATTTAATC+AGG - chr6_2:80832923-80832942 Msa0931400:intron 25.0%
! TTAGAAGAAAATTGTATTGG+TGG + chr6_2:80833091-80833110 None:intergenic 25.0%
! GTCTTAGAAGAAAATTGTAT+TGG + chr6_2:80833094-80833113 None:intergenic 25.0%
!!! TTCTTCTAAGACAATGAAAT+TGG - chr6_2:80833102-80833121 Msa0931400:intron 25.0%
! TTTGATATTAACTCTTTCTC+AGG + chr6_2:80833148-80833167 None:intergenic 25.0%
! AATGTAGATGAAAGGTTTAT+CGG + chr6_2:80833172-80833191 None:intergenic 25.0%
! ATGGGAAAAGAAATTATACA+AGG - chr6_2:80833207-80833226 Msa0931400:intron 25.0%
! GAAATTATACAAGGAAGTTA+AGG - chr6_2:80833216-80833235 Msa0931400:intron 25.0%
!! GAAATTAGTTACTTTATGCA+TGG - chr6_2:80833257-80833276 Msa0931400:intron 25.0%
! ATGGGAAAAGAAATTATACA+AGG - chr6_2:80833207-80833226 Msa0931400:intron 25.0%
! GAAATTATACAAGGAAGTTA+AGG - chr6_2:80833216-80833235 Msa0931400:intron 25.0%
! TTCATGAAATTAGAAAACGT+TGG - chr6_2:80833364-80833383 Msa0931400:intron 25.0%
! GTTTGAGAGATGATATAAAT+TGG - chr6_2:80833498-80833517 Msa0931400:intron 25.0%
!!! AAAAGTGTTGAAACTATATC+AGG - chr6_2:80833825-80833844 Msa0931400:CDS 25.0%
!!! AAAGTGTTGAAACTATATCA+GGG - chr6_2:80833826-80833845 Msa0931400:CDS 25.0%
! TTAATGAAACAGTTCAACTT+TGG + chr6_2:80834097-80834116 None:intergenic 25.0%
! CAAAATCAAACATTCCATTA+GGG + chr6_2:80834153-80834172 None:intergenic 25.0%
!!! AATTTGTTGTTTTTCCTACA+CGG - chr6_2:80834407-80834426 Msa0931400:CDS 25.0%
! ATGAATAGAATTTCAGAAAG+AGG - chr6_2:80834881-80834900 Msa0931400:CDS 25.0%
! TGAATAGAATTTCAGAAAGA+GGG - chr6_2:80834882-80834901 Msa0931400:CDS 25.0%
! TAATAGTTTACAAACTGGTT+TGG - chr6_2:80835228-80835247 Msa0931400:five_prime_UTR 25.0%
!!! CTTTCTAAGGTCTTAAAAAT+GGG + chr6_2:80835256-80835275 None:intergenic 25.0%
!!! ACTTTCTAAGGTCTTAAAAA+TGG + chr6_2:80835257-80835276 None:intergenic 25.0%
TTTGCATTTGCATTTGCATT+TGG + chr6_2:80830556-80830575 None:intergenic 30.0%
GTATATAGTTAGGAAATTGG+TGG + chr6_2:80830611-80830630 None:intergenic 30.0%
GGAGTATATAGTTAGGAAAT+TGG + chr6_2:80830614-80830633 None:intergenic 30.0%
TGTTGTTGGAGTATATAGTT+AGG + chr6_2:80830621-80830640 None:intergenic 30.0%
! GATCTGTAAATTGTTGTTGT+TGG + chr6_2:80830635-80830654 None:intergenic 30.0%
AATTATAACAGAAAGAGCCA+AGG + chr6_2:80830785-80830804 None:intergenic 30.0%
GTGAAAATTAGTGAAGGAAA+AGG + chr6_2:80830884-80830903 None:intergenic 30.0%
AGCATAATGAAGGAAAGAAA+TGG + chr6_2:80831047-80831066 None:intergenic 30.0%
TGGAAGAAAAAGATCTTGAT+CGG + chr6_2:80831285-80831304 None:intergenic 30.0%
GAAGAAATTGAAGAAGAAGA+AGG + chr6_2:80831320-80831339 None:intergenic 30.0%
!!! GTGGTTACTACTATTTTTAG+AGG + chr6_2:80831378-80831397 None:intergenic 30.0%
TCTCATTTGAATCTTTCTTC+TGG - chr6_2:80831431-80831450 Msa0931400:CDS 30.0%
TTTGAATCTTTCTTCTGGAT+CGG - chr6_2:80831436-80831455 Msa0931400:CDS 30.0%
CAAGAAAGAGGATTTGAATA+TGG - chr6_2:80831551-80831570 Msa0931400:CDS 30.0%
TGTTGATATGGATATGGATA+TGG + chr6_2:80831635-80831654 None:intergenic 30.0%
CAATCTTGTTGATATGGATA+TGG + chr6_2:80831641-80831660 None:intergenic 30.0%
CATATCCATATCAACAAGAT+TGG - chr6_2:80831639-80831658 Msa0931400:intron 30.0%
TGATTCCAATCTTGTTGATA+TGG + chr6_2:80831647-80831666 None:intergenic 30.0%
ATTGGAATCAAAATCAACCA+GGG - chr6_2:80831657-80831676 Msa0931400:intron 30.0%
TATGGGTATAATGGTATGAA+TGG - chr6_2:80831800-80831819 Msa0931400:intron 30.0%
!!! TAGTGGTTTTTTTGGTTTTC+CGG - chr6_2:80831829-80831848 Msa0931400:intron 30.0%
! TATTCTGGTTATGGAAGTTA+TGG - chr6_2:80831962-80831981 Msa0931400:intron 30.0%
! GTTATGGAAGTTATGGATTA+GGG - chr6_2:80831969-80831988 Msa0931400:intron 30.0%
AGATTGTGCTAGAATAATCA+TGG - chr6_2:80832651-80832670 Msa0931400:intron 30.0%
GATTGTGCTAGAATAATCAT+GGG - chr6_2:80832652-80832671 Msa0931400:intron 30.0%
ATGACTGATGTATGTTATGT+AGG - chr6_2:80832677-80832696 Msa0931400:intron 30.0%
TGCTTACAACATTAAGCAAT+AGG - chr6_2:80832711-80832730 Msa0931400:intron 30.0%
CAACATTAAGCAATAGGATA+AGG - chr6_2:80832717-80832736 Msa0931400:intron 30.0%
ACATTAAGCAATAGGATAAG+GGG - chr6_2:80832719-80832738 Msa0931400:intron 30.0%
! TTTTCTTGAAGCACAAAACT+GGG + chr6_2:80832789-80832808 None:intergenic 30.0%
! ATTTTCTTGAAGCACAAAAC+TGG + chr6_2:80832790-80832809 None:intergenic 30.0%
GATAAACCTTTCATCTACAT+TGG - chr6_2:80833171-80833190 Msa0931400:intron 30.0%
ATTGGAGAAACTTTATGCAT+GGG - chr6_2:80833189-80833208 Msa0931400:intron 30.0%
! TTACTGTGTATCCTTCTTTT+AGG - chr6_2:80833420-80833439 Msa0931400:intron 30.0%
! TACTGTGTATCCTTCTTTTA+GGG - chr6_2:80833421-80833440 Msa0931400:intron 30.0%
ATGAAAGGGAAACTATGTAT+AGG + chr6_2:80833467-80833486 None:intergenic 30.0%
! AAAAACAATGCTGATTATGC+AGG + chr6_2:80833568-80833587 None:intergenic 30.0%
TTGTATTTAACACTGTTCTC+AGG - chr6_2:80833662-80833681 Msa0931400:CDS 30.0%
!! AGCATCAATTTTAGTAGCTT+CGG + chr6_2:80833757-80833776 None:intergenic 30.0%
AGCTTGCAGCATTAATTAAT+GGG - chr6_2:80833886-80833905 Msa0931400:CDS 30.0%
AGTAGAAATTTCTCAGCTAA+GGG - chr6_2:80833959-80833978 Msa0931400:CDS 30.0%
!! ACTGTCAACTAAAGCATTTT+TGG + chr6_2:80834065-80834084 None:intergenic 30.0%
TATGAATCAGAAATCCCTAA+TGG - chr6_2:80834136-80834155 Msa0931400:CDS 30.0%
GCAAAATCAAACATTCCATT+AGG + chr6_2:80834154-80834173 None:intergenic 30.0%
TATCATCAATAGTGACAACA+AGG + chr6_2:80834187-80834206 None:intergenic 30.0%
! GTCACTATTGATGATAATGT+AGG - chr6_2:80834191-80834210 Msa0931400:CDS 30.0%
CAATCTCTCAAATTAAACAC+TGG - chr6_2:80834617-80834636 Msa0931400:CDS 30.0%
AAGCCATTATAGAACTTGAA+AGG - chr6_2:80834663-80834682 Msa0931400:CDS 30.0%
AGCCATTATAGAACTTGAAA+GGG - chr6_2:80834664-80834683 Msa0931400:CDS 30.0%
ATGTTGAAAATTTGAATGGG+TGG - chr6_2:80834741-80834760 Msa0931400:CDS 30.0%
CTTTCATTATCTGCAATGAT+TGG - chr6_2:80834849-80834868 Msa0931400:CDS 30.0%
GAATAGAATTTCAGAAAGAG+GGG - chr6_2:80834883-80834902 Msa0931400:CDS 30.0%
GCTTCTAATAGTTTACAAAC+TGG - chr6_2:80835223-80835242 Msa0931400:five_prime_UTR 30.0%
ATTAACTCTAGCTGCAAAAT+TGG + chr6_2:80835370-80835389 None:intergenic 30.0%
TAGAGTTAATCTTGGTATGT+AGG - chr6_2:80835380-80835399 Msa0931400:five_prime_UTR 30.0%
AAACGCGTGAAAATTAGTGA+AGG + chr6_2:80830890-80830909 None:intergenic 35.0%
! AAGAGGTTGTGTTTGTTACT+GGG + chr6_2:80830920-80830939 None:intergenic 35.0%
TACTAAAATGGAAGCAGCAT+GGG + chr6_2:80830977-80830996 None:intergenic 35.0%
ATACTAAAATGGAAGCAGCA+TGG + chr6_2:80830978-80830997 None:intergenic 35.0%
GGAAAGAAATGGAAGAAAGA+TGG + chr6_2:80831036-80831055 None:intergenic 35.0%
! GAGAAATGGAAGCATAATGA+AGG + chr6_2:80831057-80831076 None:intergenic 35.0%
!! TTTGTGGTGTTGTTGAGAAA+TGG + chr6_2:80831071-80831090 None:intergenic 35.0%
!!! CAATTTGTCGTGGTTTTTTG+TGG + chr6_2:80831087-80831106 None:intergenic 35.0%
! TTGTAAATTAACATGGGCTG+CGG - chr6_2:80831104-80831123 Msa0931400:CDS 35.0%
! CAAGATCTTTTTCTTCCAAC+TGG - chr6_2:80831287-80831306 Msa0931400:CDS 35.0%
ACTCAAGATCATGATCATCA+TGG + chr6_2:80831400-80831419 None:intergenic 35.0%
TGATGAACATGATCTGAAGA+AGG + chr6_2:80831473-80831492 None:intergenic 35.0%
TTATACCCGTAAGAAGAAGA+TGG + chr6_2:80831608-80831627 None:intergenic 35.0%
GATTGGAATCAAAATCAACC+AGG - chr6_2:80831656-80831675 Msa0931400:intron 35.0%
TTGGAATCAAAATCAACCAG+GGG - chr6_2:80831658-80831677 Msa0931400:intron 35.0%
TAAGCATAACTATTAACCCC+TGG + chr6_2:80831677-80831696 None:intergenic 35.0%
TTATACCCATAACCACCATA+AGG + chr6_2:80831791-80831810 None:intergenic 35.0%
TATGGTGGTTATGGGTATAA+TGG - chr6_2:80831791-80831810 Msa0931400:intron 35.0%
!!! GGAGGTAATAGTGGTTTTTT+TGG - chr6_2:80831821-80831840 Msa0931400:intron 35.0%
AAATCCCAAGTAGAAACTCT+CGG + chr6_2:80831908-80831927 None:intergenic 35.0%
GGTTATGGAAGTTATGGATT+AGG - chr6_2:80831968-80831987 Msa0931400:intron 35.0%
!! GAAGTTATGGATTAGGGTTA+GGG - chr6_2:80831975-80831994 Msa0931400:intron 35.0%
TCCTGATTCAAAAGAAGTGA+GGG - chr6_2:80832018-80832037 Msa0931400:intron 35.0%
TCCTGAATTAGAAGATGAGA+CGG - chr6_2:80832054-80832073 Msa0931400:intron 35.0%
AGAAAAGGAAGAGGTTGTTA+AGG - chr6_2:80832144-80832163 Msa0931400:intron 35.0%
GAAAAGGAAGAGGTTGTTAA+GGG - chr6_2:80832145-80832164 Msa0931400:intron 35.0%
! CCTTTAGGAACAACATTATC+AGG + chr6_2:80832313-80832332 None:intergenic 35.0%
! CCTGATAATGTTGTTCCTAA+AGG - chr6_2:80832310-80832329 Msa0931400:CDS 35.0%
GGATCTAAAAGAGGTTGTTA+GGG - chr6_2:80832465-80832484 Msa0931400:intron 35.0%
! TTTGAGACTGCTTCTAATCA+TGG - chr6_2:80832502-80832521 Msa0931400:intron 35.0%
!! TTTTGGATTTGGTTTCGTAG+TGG - chr6_2:80832622-80832641 Msa0931400:intron 35.0%
GATGTATGTTATGTAGGAGA+AGG - chr6_2:80832683-80832702 Msa0931400:intron 35.0%
! AAATTGGCAAAAGCATACTG+TGG - chr6_2:80833118-80833137 Msa0931400:intron 35.0%
! AATTGGCAAAAGCATACTGT+GGG - chr6_2:80833119-80833138 Msa0931400:intron 35.0%
GTTTCTCCAATGTAGATGAA+AGG + chr6_2:80833180-80833199 None:intergenic 35.0%
CATTGGAGAAACTTTATGCA+TGG - chr6_2:80833188-80833207 Msa0931400:intron 35.0%
TACACAGTAAATCAGCTAGA+TGG + chr6_2:80833410-80833429 None:intergenic 35.0%
! ACTGTGTATCCTTCTTTTAG+GGG - chr6_2:80833422-80833441 Msa0931400:intron 35.0%
! ATGCAAGAGATTGAAAGCAT+TGG - chr6_2:80833719-80833738 Msa0931400:CDS 35.0%
!! TTGAAAGCATTGGATAATCG+AGG - chr6_2:80833729-80833748 Msa0931400:CDS 35.0%
TTAATTAATGCTGCAAGCTG+AGG + chr6_2:80833885-80833904 None:intergenic 35.0%
CAGCTTGCAGCATTAATTAA+TGG - chr6_2:80833885-80833904 Msa0931400:CDS 35.0%
GAGTAGAAATTTCTCAGCTA+AGG - chr6_2:80833958-80833977 Msa0931400:CDS 35.0%
! GCTATCCAATTCCATTTTGT+TGG - chr6_2:80834014-80834033 Msa0931400:CDS 35.0%
TTGCACCAACAAAATGGAAT+TGG + chr6_2:80834022-80834041 None:intergenic 35.0%
! GCTAATTTGCACCAACAAAA+TGG + chr6_2:80834028-80834047 None:intergenic 35.0%
!! GTCAACTAAAGCATTTTTGG+AGG + chr6_2:80834062-80834081 None:intergenic 35.0%
TGAAACAGTTCAACTTTGGA+GGG + chr6_2:80834093-80834112 None:intergenic 35.0%
ATGAAACAGTTCAACTTTGG+AGG + chr6_2:80834094-80834113 None:intergenic 35.0%
GGGATTTCTGATTCATAGAT+AGG + chr6_2:80834133-80834152 None:intergenic 35.0%
CTATTCTCAGCGTCTTATAA+AGG + chr6_2:80834227-80834246 None:intergenic 35.0%
TATAAGACGCTGAGAATAGA+TGG - chr6_2:80834228-80834247 Msa0931400:CDS 35.0%
TCAATCTCTCGAGCTATAAT+TGG + chr6_2:80834283-80834302 None:intergenic 35.0%
GCGTTTATCTCACATTATGT+CGG - chr6_2:80834315-80834334 Msa0931400:CDS 35.0%
!!! CATCATTTTTGGTTTTGGGA+TGG - chr6_2:80834381-80834400 Msa0931400:CDS 35.0%
TCAGCAGATTGATAAGAATG+TGG - chr6_2:80834537-80834556 Msa0931400:CDS 35.0%
!! CTCCCTTTCAAGTTCTATAA+TGG + chr6_2:80834669-80834688 None:intergenic 35.0%
! TTTCTTCAGGTTCATCAAGA+AGG + chr6_2:80834778-80834797 None:intergenic 35.0%
TTGCAGATAATGAAAGCTTG+CGG + chr6_2:80834845-80834864 None:intergenic 35.0%
AGAAACAAGATGAGGAACAA+AGG - chr6_2:80834954-80834973 Msa0931400:CDS 35.0%
TCGAAGTTCAATTCTGATAG+TGG - chr6_2:80835094-80835113 Msa0931400:five_prime_UTR 35.0%
AGAAGAAATTGCATGATGAG+AGG - chr6_2:80835161-80835180 Msa0931400:five_prime_UTR 35.0%
GAAGAAATTGCATGATGAGA+GGG - chr6_2:80835162-80835181 Msa0931400:five_prime_UTR 35.0%
AACTATTAGAAGCTGCATCA+CGG + chr6_2:80835216-80835235 None:intergenic 35.0%
!! CTCTGAAGTGAAACTTTCTA+AGG + chr6_2:80835269-80835288 None:intergenic 35.0%
CTTAGAAAGTTTCACTTCAG+AGG - chr6_2:80835267-80835286 Msa0931400:five_prime_UTR 35.0%
TTTGCAGCTAGAGTTAATCT+TGG - chr6_2:80835372-80835391 Msa0931400:five_prime_UTR 35.0%
AGTTTCAGCAACTAAAGCTT+TGG - chr6_2:80835445-80835464 Msa0931400:five_prime_UTR 35.0%
GTTTCAGCAACTAAAGCTTT+GGG - chr6_2:80835446-80835465 Msa0931400:five_prime_UTR 35.0%
! ATTTTGCCTGACTGTAGATT+GGG + chr6_2:80835519-80835538 None:intergenic 35.0%
! AATTTTGCCTGACTGTAGAT+TGG + chr6_2:80835520-80835539 None:intergenic 35.0%
!! TGGTGGAGATTTTTCAGAGA+AGG + chr6_2:80830594-80830613 None:intergenic 40.0%
!! CATAGAGATTGGTGATGTTG+GGG + chr6_2:80830657-80830676 None:intergenic 40.0%
!! GCATAGAGATTGGTGATGTT+GGG + chr6_2:80830658-80830677 None:intergenic 40.0%
AGGGAAAATGGCATAGAGAT+TGG + chr6_2:80830668-80830687 None:intergenic 40.0%
TGTACTCTGAACTCAATCCT+TGG - chr6_2:80830765-80830784 Msa0931400:three_prime_UTR 40.0%
CATCTCTATTCACCCATCAA+CGG - chr6_2:80830841-80830860 Msa0931400:CDS 40.0%
AGTGAAATCTGACCGTTGAT+GGG + chr6_2:80830856-80830875 None:intergenic 40.0%
! GAAGAGGTTGTGTTTGTTAC+TGG + chr6_2:80830921-80830940 None:intergenic 40.0%
! TTGCTCTGCATTTTGTGAAG+AGG + chr6_2:80830937-80830956 None:intergenic 40.0%
! TGTAAATTAACATGGGCTGC+GGG - chr6_2:80831105-80831124 Msa0931400:CDS 40.0%
TTCTCTGCAAAGAGTTACCA+CGG + chr6_2:80831153-80831172 None:intergenic 40.0%
CTGTAAATAAGAGAGATGCG+CGG + chr6_2:80831225-80831244 None:intergenic 40.0%
TTACAGTCTCTCAGAGACAT+CGG - chr6_2:80831239-80831258 Msa0931400:CDS 40.0%
CAAGATCATGATCATCATGG+TGG + chr6_2:80831397-80831416 None:intergenic 40.0%
! TTCTTGTTCTCGTTCAGGTT+CGG + chr6_2:80831531-80831550 None:intergenic 40.0%
TCTTGTTCTTGTTCTCGTTC+AGG + chr6_2:80831536-80831555 None:intergenic 40.0%
CGAGAACAAGAACAAGAAAG+AGG - chr6_2:80831539-80831558 Msa0931400:CDS 40.0%
! TAGATCACAGATTTTCCACG+TGG + chr6_2:80831719-80831738 None:intergenic 40.0%
GTTCTCCTTATGGTGGTTAT+GGG - chr6_2:80831783-80831802 Msa0931400:intron 40.0%
GGGTATAATGGTATGAATGG+AGG - chr6_2:80831803-80831822 Msa0931400:intron 40.0%
GGTATGAATGGAGGTAATAG+TGG - chr6_2:80831812-80831831 Msa0931400:intron 40.0%
!!! TGGTTTTTTTGGTTTTCCGG+CGG - chr6_2:80831832-80831851 Msa0931400:intron 40.0%
!! GGAAGTTATGGATTAGGGTT+AGG - chr6_2:80831974-80831993 Msa0931400:intron 40.0%
GTCCTGATTCAAAAGAAGTG+AGG - chr6_2:80832017-80832036 Msa0931400:intron 40.0%
! TCCCTCACTTCTTTTGAATC+AGG + chr6_2:80832022-80832041 None:intergenic 40.0%
TCCGTCTCATCTTCTAATTC+AGG + chr6_2:80832058-80832077 None:intergenic 40.0%
ATTAGAAGATGAGACGGAAC+AGG - chr6_2:80832060-80832079 Msa0931400:intron 40.0%
TGAGGAGAAGAAGAAGAAAG+TGG - chr6_2:80832105-80832124 Msa0931400:intron 40.0%
AGAGGAAGTGGAGAAAGAAA+AGG - chr6_2:80832129-80832148 Msa0931400:intron 40.0%
AGTGGAGAAAGAAAAGGAAG+AGG - chr6_2:80832135-80832154 Msa0931400:intron 40.0%
! GTTGTTAAGGGTGGAGATTT+TGG - chr6_2:80832157-80832176 Msa0931400:intron 40.0%
!! TGAAGGTACTTCGAATTCGA+AGG - chr6_2:80832180-80832199 Msa0931400:intron 40.0%
TAGTGAGGGAAGTTCCAAAA+CGG - chr6_2:80832228-80832247 Msa0931400:CDS 40.0%
TTTCATAGTAGCGAAGGTAG+TGG - chr6_2:80832256-80832275 Msa0931400:CDS 40.0%
! TTTCTAGGAGGAGATCCTTT+AGG + chr6_2:80832328-80832347 None:intergenic 40.0%
GATCTCCTCCTAGAAAGAAA+GGG - chr6_2:80832332-80832351 Msa0931400:CDS 40.0%
ATCTCCTCCTAGAAAGAAAG+GGG - chr6_2:80832333-80832352 Msa0931400:CDS 40.0%
AAACTCACCCCTTTCTTTCT+AGG + chr6_2:80832343-80832362 None:intergenic 40.0%
GTTACAACAGTAGAGGTTGA+TGG - chr6_2:80832391-80832410 Msa0931400:CDS 40.0%
TTAAGCACTTTGTCTCCACA+TGG - chr6_2:80832436-80832455 Msa0931400:intron 40.0%
TTTGTCTCCACATGGAACTA+GGG - chr6_2:80832444-80832463 Msa0931400:intron 40.0%
TTTAGATCCCTAGTTCCATG+TGG + chr6_2:80832454-80832473 None:intergenic 40.0%
TGGAACTAGGGATCTAAAAG+AGG - chr6_2:80832456-80832475 Msa0931400:intron 40.0%
GGGATCTAAAAGAGGTTGTT+AGG - chr6_2:80832464-80832483 Msa0931400:intron 40.0%
TGCTTCTAATCATGGAAGAG+AGG - chr6_2:80832510-80832529 Msa0931400:intron 40.0%
!! TCAAGACTTGCTGCATTTAG+AGG - chr6_2:80832571-80832590 Msa0931400:intron 40.0%
!! TGCTGCATTTAGAGGTATCA+AGG - chr6_2:80832579-80832598 Msa0931400:intron 40.0%
AATAGGATAAGGGGCTTGTA+GGG - chr6_2:80832728-80832747 Msa0931400:intron 40.0%
!! GCAGTTGCAGTTTGATTTGA+AGG - chr6_2:80832810-80832829 Msa0931400:intron 40.0%
! ATTGGCAAAAGCATACTGTG+GGG - chr6_2:80833120-80833139 Msa0931400:intron 40.0%
GTGTTGAAACTATATCAGGG+AGG - chr6_2:80833829-80833848 Msa0931400:CDS 40.0%
AGGGAGGATACATAAACTGA+GGG - chr6_2:80833845-80833864 Msa0931400:CDS 40.0%
GCTGAGAAATTTCTACTCAC+AGG + chr6_2:80833956-80833975 None:intergenic 40.0%
ATCTCACATTATGTCGGAAG+TGG - chr6_2:80834321-80834340 Msa0931400:CDS 40.0%
AGAAAAACACTCAACCGTGT+AGG + chr6_2:80834424-80834443 None:intergenic 40.0%
! TACACGGTTGAGTGTTTTTC+TGG - chr6_2:80834423-80834442 Msa0931400:CDS 40.0%
!!! GTTGAGTGTTTTTCTGGAGT+TGG - chr6_2:80834429-80834448 Msa0931400:CDS 40.0%
! TTTTACTCTCCATGATAGCC+TGG + chr6_2:80834595-80834614 None:intergenic 40.0%
!! ACTGGTTTGCAAAGAGATGA+AGG - chr6_2:80834635-80834654 Msa0931400:CDS 40.0%
TTGAAAGGGAGCTTCTGAAT+TGG - chr6_2:80834678-80834697 Msa0931400:CDS 40.0%
GTGCACACAGTTCAACAATT+GGG - chr6_2:80834700-80834719 Msa0931400:CDS 40.0%
GAACCTGAAGAAACAGATGA+TGG - chr6_2:80834785-80834804 Msa0931400:CDS 40.0%
! ACACCATCATCTGTTTCTTC+AGG + chr6_2:80834791-80834810 None:intergenic 40.0%
TAGAATTTCAGAAAGAGGGG+TGG - chr6_2:80834886-80834905 Msa0931400:CDS 40.0%
TCAAAAGCTGCATGAGCTAT+GGG - chr6_2:80834931-80834950 Msa0931400:CDS 40.0%
AACAAGATGAGGAACAAAGG+CGG - chr6_2:80834957-80834976 Msa0931400:CDS 40.0%
! TTTGTCATGCTCGTGTTTTG+AGG + chr6_2:80835053-80835072 None:intergenic 40.0%
ACGAGCATGACAAAGTTTCA+GGG - chr6_2:80835059-80835078 Msa0931400:five_prime_UTR 40.0%
CCTAATGGCTTCCTTATGTT+TGG + chr6_2:80835188-80835207 None:intergenic 40.0%
CCAAACATAAGGAAGCCATT+AGG - chr6_2:80835185-80835204 Msa0931400:five_prime_UTR 40.0%
AGAAAGTTTCACTTCAGAGG+TGG - chr6_2:80835270-80835289 Msa0931400:five_prime_UTR 40.0%
AACTCTAGCTGCAAAATTGG+TGG + chr6_2:80835367-80835386 None:intergenic 40.0%
!!! CCTCTTCAGAGAGTTTTAAG+AGG + chr6_2:80835412-80835431 None:intergenic 40.0%
! CCTCTTAAAACTCTCTGAAG+AGG - chr6_2:80835409-80835428 Msa0931400:five_prime_UTR 40.0%
!! GGCATAGAGATTGGTGATGT+TGG + chr6_2:80830659-80830678 None:intergenic 45.0%
!! ATCGTGGATCGATTTGGAAG+GGG + chr6_2:80830820-80830839 None:intergenic 45.0%
!! GATCGTGGATCGATTTGGAA+GGG + chr6_2:80830821-80830840 None:intergenic 45.0%
AGATGGATCGTGGATCGATT+TGG + chr6_2:80830826-80830845 None:intergenic 45.0%
! CGTTGATGGGTGAATAGAGA+TGG + chr6_2:80830843-80830862 None:intergenic 45.0%
GAGTGAAATCTGACCGTTGA+TGG + chr6_2:80830857-80830876 None:intergenic 45.0%
! GGTTGTGTTTGTTACTGGGA+GGG + chr6_2:80830916-80830935 None:intergenic 45.0%
! AGGTTGTGTTTGTTACTGGG+AGG + chr6_2:80830917-80830936 None:intergenic 45.0%
CAGTTCAGTGAGGGTAATAG+TGG + chr6_2:80831008-80831027 None:intergenic 45.0%
ATGGCTGTTCAGTTCAGTGA+GGG + chr6_2:80831017-80831036 None:intergenic 45.0%
! GTAAATTAACATGGGCTGCG+GGG - chr6_2:80831106-80831125 Msa0931400:CDS 45.0%
! TAAATTAACATGGGCTGCGG+GGG - chr6_2:80831107-80831126 Msa0931400:CDS 45.0%
TCTCTGCAAAGAGTTACCAC+GGG + chr6_2:80831152-80831171 None:intergenic 45.0%
TAAATAAGAGAGATGCGCGG+CGG + chr6_2:80831222-80831241 None:intergenic 45.0%
GAAGAAGGAGTAGAACCAGT+TGG + chr6_2:80831305-80831324 None:intergenic 45.0%
AGAAGGCAATGTGAGAACAG+GGG + chr6_2:80831342-80831361 None:intergenic 45.0%
GAGAAGGCAATGTGAGAACA+GGG + chr6_2:80831343-80831362 None:intergenic 45.0%
GAGGATTTACCTTCACGAGA+AGG + chr6_2:80831359-80831378 None:intergenic 45.0%
! AAGAAGAAGATGGTTCGGGT+TGG + chr6_2:80831598-80831617 None:intergenic 45.0%
CCGTAAGAAGAAGATGGTTC+GGG + chr6_2:80831602-80831621 None:intergenic 45.0%
CCCGAACCATCTTCTTCTTA+CGG - chr6_2:80831599-80831618 Msa0931400:intron 45.0%
CCCGTAAGAAGAAGATGGTT+CGG + chr6_2:80831603-80831622 None:intergenic 45.0%
CCGAACCATCTTCTTCTTAC+GGG - chr6_2:80831600-80831619 Msa0931400:intron 45.0%
ATGAAGAAATCTGCACCACG+TGG - chr6_2:80831701-80831720 Msa0931400:intron 45.0%
!! CAATGGACTGGTTCTCCTTA+TGG - chr6_2:80831773-80831792 Msa0931400:intron 45.0%
GGTTCTCCTTATGGTGGTTA+TGG - chr6_2:80831782-80831801 Msa0931400:intron 45.0%
!!! GGTTTTTTTGGTTTTCCGGC+GGG - chr6_2:80831833-80831852 Msa0931400:intron 45.0%
ACCACCGAGAGTTTCTACTT+GGG - chr6_2:80831901-80831920 Msa0931400:intron 45.0%
AAAGAAGTGAGGGAGAGAGA+AGG - chr6_2:80832028-80832047 Msa0931400:intron 45.0%
AAGAAGTGAGGGAGAGAGAA+GGG - chr6_2:80832029-80832048 Msa0931400:intron 45.0%
GAAGAAGAAGAAAGTGGCAG+AGG - chr6_2:80832111-80832130 Msa0931400:intron 45.0%
AAGGAAGAGGTTGTTAAGGG+TGG - chr6_2:80832148-80832167 Msa0931400:intron 45.0%
!! AAGGGTGGAGATTTTGGTGA+AGG - chr6_2:80832163-80832182 Msa0931400:intron 45.0%
CTACTACTCACCTGTTGCAA+TGG + chr6_2:80832211-80832230 None:intergenic 45.0%
CAACAGGTGAGTAGTAGTGA+GGG - chr6_2:80832214-80832233 Msa0931400:CDS 45.0%
! ACTATGAAACCGCACCGTTT+TGG + chr6_2:80832245-80832264 None:intergenic 45.0%
GGATCTCCTCCTAGAAAGAA+AGG - chr6_2:80832331-80832350 Msa0931400:CDS 45.0%
!!! AGGGGTGAGTTTTGAGATTG+AGG - chr6_2:80832351-80832370 Msa0931400:CDS 45.0%
!!! GGGGTGAGTTTTGAGATTGA+GGG - chr6_2:80832352-80832371 Msa0931400:CDS 45.0%
CTTTGTCTCCACATGGAACT+AGG - chr6_2:80832443-80832462 Msa0931400:intron 45.0%
AGAGGTTGCATTTCTTCTCG+AGG - chr6_2:80832528-80832547 Msa0931400:intron 45.0%
GCAAGTCTTGACTGATAAGG+TGG + chr6_2:80832562-80832581 None:intergenic 45.0%
GCAGCAAGTCTTGACTGATA+AGG + chr6_2:80832565-80832584 None:intergenic 45.0%
CAATAGGATAAGGGGCTTGT+AGG - chr6_2:80832727-80832746 Msa0931400:intron 45.0%
! AATTGTATTGGTGGCCCAGA+TGG + chr6_2:80833082-80833101 None:intergenic 45.0%
!! ATCCTTCTTTTAGGGGACGA+AGG - chr6_2:80833429-80833448 Msa0931400:intron 45.0%
ACTGTTCTCAGGATGAAGAG+AGG - chr6_2:80833673-80833692 Msa0931400:CDS 45.0%
CAGGGAGGATACATAAACTG+AGG - chr6_2:80833844-80833863 Msa0931400:CDS 45.0%
TCTCAGCGTCTTATAAAGGC+AGG + chr6_2:80834223-80834242 None:intergenic 45.0%
TAGATGGTCACGTGGTATAG+AGG - chr6_2:80834244-80834263 Msa0931400:CDS 45.0%
AGATGGTCACGTGGTATAGA+GGG - chr6_2:80834245-80834264 Msa0931400:CDS 45.0%
TAGCTCGAGAGATTGATGAG+AGG - chr6_2:80834287-80834306 Msa0931400:CDS 45.0%
ATTATGTCGGAAGTGGCTGA+AGG - chr6_2:80834328-80834347 Msa0931400:CDS 45.0%
TGATAGCCTGGAACTGTTTC+TGG + chr6_2:80834583-80834602 None:intergenic 45.0%
GAAACAGTTCCAGGCTATCA+TGG - chr6_2:80834583-80834602 Msa0931400:CDS 45.0%
GGTGCACACAGTTCAACAAT+TGG - chr6_2:80834699-80834718 Msa0931400:CDS 45.0%
CACAGTTCAACAATTGGGTC+AGG - chr6_2:80834705-80834724 Msa0931400:CDS 45.0%
ATTTGAATGGGTGGCTCAGA+AGG - chr6_2:80834750-80834769 Msa0931400:CDS 45.0%
!! AATCCGACTTGGAGAGTAAG+GGG + chr6_2:80834816-80834835 None:intergenic 45.0%
!! CAATCCGACTTGGAGAGTAA+GGG + chr6_2:80834817-80834836 None:intergenic 45.0%
CTCAAAAGCTGCATGAGCTA+TGG - chr6_2:80834930-80834949 Msa0931400:CDS 45.0%
GCTATGGGAGAAACAAGATG+AGG - chr6_2:80834946-80834965 Msa0931400:CDS 45.0%
AGGAACAAAGGCGGAAAATC+AGG - chr6_2:80834966-80834985 Msa0931400:CDS 45.0%
GGAACAAAGGCGGAAAATCA+GGG - chr6_2:80834967-80834986 Msa0931400:CDS 45.0%
!!! GTGTTTTGAGGCTCCCATTT+CGG + chr6_2:80835041-80835060 None:intergenic 45.0%
CACGAGCATGACAAAGTTTC+AGG - chr6_2:80835058-80835077 Msa0931400:five_prime_UTR 45.0%
TTCGCCACTGGATGATCTAA+AGG - chr6_2:80835120-80835139 Msa0931400:five_prime_UTR 45.0%
TCCACCTTTAGATCATCCAG+TGG + chr6_2:80835127-80835146 None:intergenic 45.0%
TGATGAGAGGGCCAAACATA+AGG - chr6_2:80835174-80835193 Msa0931400:five_prime_UTR 45.0%
AATCGTCCATGTTCTCTACG+AGG + chr6_2:80835335-80835354 None:intergenic 45.0%
! GACTGTAGATTGGGTGTTAC+AGG + chr6_2:80835510-80835529 None:intergenic 45.0%
GTAACACCCAATCTACAGTC+AGG - chr6_2:80835510-80835529 Msa0931400:five_prime_UTR 45.0%
!! TCGTGGATCGATTTGGAAGG+GGG + chr6_2:80830819-80830838 None:intergenic 50.0%
!! GGATCGTGGATCGATTTGGA+AGG + chr6_2:80830822-80830841 None:intergenic 50.0%
GGGTGAATAGAGATGGATCG+TGG + chr6_2:80830836-80830855 None:intergenic 50.0%
GGAAGCAGCATGGGAAAATG+TGG + chr6_2:80830968-80830987 None:intergenic 50.0%
GATGGCTGTTCAGTTCAGTG+AGG + chr6_2:80831018-80831037 None:intergenic 50.0%
CTCTGCAAAGAGTTACCACG+GGG + chr6_2:80831151-80831170 None:intergenic 50.0%
CGAGAAGGCAATGTGAGAAC+AGG + chr6_2:80831344-80831363 None:intergenic 50.0%
CTCACATTGCCTTCTCGTGA+AGG - chr6_2:80831347-80831366 Msa0931400:CDS 50.0%
! TTCAGGTTCGGATTCAGCCT+CGG + chr6_2:80831519-80831538 None:intergenic 50.0%
!! TCGGGTTGGTGTTCGTATTG+AGG + chr6_2:80831584-80831603 None:intergenic 50.0%
!! TGGACTGGTTCTCCTTATGG+TGG - chr6_2:80831776-80831795 Msa0931400:intron 50.0%
GTAGAAACTCTCGGTGGTGA+AGG + chr6_2:80831899-80831918 None:intergenic 50.0%
CACCACCGAGAGTTTCTACT+TGG - chr6_2:80831900-80831919 Msa0931400:intron 50.0%
TCCCAAGTAGAAACTCTCGG+TGG + chr6_2:80831905-80831924 None:intergenic 50.0%
GACGGAACAGGAAACTGTGA+AGG - chr6_2:80832072-80832091 Msa0931400:intron 50.0%
GGAACAGGAAACTGTGAAGG+AGG - chr6_2:80832075-80832094 Msa0931400:intron 50.0%
TGTGAAGGAGGTTCGTCATG+AGG - chr6_2:80832087-80832106 Msa0931400:intron 50.0%
GAAGAAAGTGGCAGAGGAAG+TGG - chr6_2:80832117-80832136 Msa0931400:intron 50.0%
!! GAAGGAAGTGCCATTGCAAC+AGG - chr6_2:80832198-80832217 Msa0931400:CDS 50.0%
GCAACAGGTGAGTAGTAGTG+AGG - chr6_2:80832213-80832232 Msa0931400:CDS 50.0%
AGGGAAGTTCCAAAACGGTG+CGG - chr6_2:80832233-80832252 Msa0931400:CDS 50.0%
GTGCGGTTTCATAGTAGCGA+AGG - chr6_2:80832250-80832269 Msa0931400:CDS 50.0%
CTCACCCCTTTCTTTCTAGG+AGG + chr6_2:80832340-80832359 None:intergenic 50.0%
TGAGGGTGATGAAGATGCGA+CGG - chr6_2:80832369-80832388 Msa0931400:CDS 50.0%
TGCGACGGTTACAACAGTAG+AGG - chr6_2:80832384-80832403 Msa0931400:CDS 50.0%
GGATAGGAAGGTGGCTTAGA+AGG + chr6_2:80833058-80833077 None:intergenic 50.0%
CACCTTCCTATCCTCCATCT+GGG - chr6_2:80833065-80833084 Msa0931400:intron 50.0%
AGCCTTCGTCCCCTAAAAGA+AGG + chr6_2:80833434-80833453 None:intergenic 50.0%
AGCGTCTTATAAAGGCAGGC+AGG + chr6_2:80834219-80834238 None:intergenic 50.0%
GCTGAGAATAGATGGTCACG+TGG - chr6_2:80834236-80834255 Msa0931400:CDS 50.0%
!! GGAACTGTTTCTGGTGGCAT+TGG + chr6_2:80834574-80834593 None:intergenic 50.0%
ATGCCACCAGAAACAGTTCC+AGG - chr6_2:80834574-80834593 Msa0931400:CDS 50.0%
!! TAGCCTGGAACTGTTTCTGG+TGG + chr6_2:80834580-80834599 None:intergenic 50.0%
TTGCCCCTTACTCTCCAAGT+CGG - chr6_2:80834810-80834829 Msa0931400:CDS 50.0%
!! CCAATCCGACTTGGAGAGTA+AGG + chr6_2:80834818-80834837 None:intergenic 50.0%
CCTTACTCTCCAAGTCGGAT+TGG - chr6_2:80834815-80834834 Msa0931400:CDS 50.0%
! CAGGGCAGAGTATCTCACAA+AGG - chr6_2:80834985-80835004 Msa0931400:CDS 50.0%
!! TGATAGTGGTGTTTCGCCAC+TGG - chr6_2:80835108-80835127 Msa0931400:five_prime_UTR 50.0%
GCCACTGGATGATCTAAAGG+TGG - chr6_2:80835123-80835142 Msa0931400:five_prime_UTR 50.0%
TGCATCACGGACAAGCCTAA+TGG + chr6_2:80835203-80835222 None:intergenic 50.0%
AGAGGTGGTGAAAGCTCATG+AGG - chr6_2:80835285-80835304 Msa0931400:five_prime_UTR 50.0%
! GCTTTGGGTGTGTAAACGTC+AGG - chr6_2:80835461-80835480 Msa0931400:five_prime_UTR 50.0%
GGTGTGTAAACGTCAGGACA+TGG - chr6_2:80835467-80835486 Msa0931400:five_prime_UTR 50.0%
!! CGTGGATCGATTTGGAAGGG+GGG + chr6_2:80830818-80830837 None:intergenic 55.0%
! GGCGAGAGCGTAACGTTGAT+CGG + chr6_2:80831201-80831220 None:intergenic 55.0%
GAGACATCGGAGAAGCTCTG+AGG - chr6_2:80831252-80831271 Msa0931400:CDS 55.0%
ACATGAACACCGAACACCCG+AGG - chr6_2:80831499-80831518 Msa0931400:CDS 55.0%
TCAGGTTCGGATTCAGCCTC+GGG + chr6_2:80831518-80831537 None:intergenic 55.0%
TCAAGAACCCGAGAGACACG+TGG - chr6_2:80831739-80831758 Msa0931400:intron 55.0%
AGATTCCGCCACGTGTCTCT+CGG + chr6_2:80831750-80831769 None:intergenic 55.0%
! ACGTGGCGGAATCTGGACAA+TGG - chr6_2:80831756-80831775 Msa0931400:intron 55.0%
GCGGAATCTGGACAATGGAC+TGG - chr6_2:80831761-80831780 Msa0931400:intron 55.0%
GAAACTCTCGGTGGTGAAGG+TGG + chr6_2:80831896-80831915 None:intergenic 55.0%
! GGTTAGGGTTAGCGTCGAGT+GGG - chr6_2:80831990-80832009 Msa0931400:intron 55.0%
CCAGATGGAGGATAGGAAGG+TGG + chr6_2:80833067-80833086 None:intergenic 55.0%
CCACCTTCCTATCCTCCATC+TGG - chr6_2:80833064-80833083 Msa0931400:intron 55.0%
! TGTATTGGTGGCCCAGATGG+AGG + chr6_2:80833079-80833098 None:intergenic 55.0%
AAGAGGGGTGGCAGATGCTA+TGG - chr6_2:80834898-80834917 Msa0931400:CDS 55.0%
AGAGGGGTGGCAGATGCTAT+GGG - chr6_2:80834899-80834918 Msa0931400:CDS 55.0%
CTGCAGCCTCGTAGAGAACA+TGG - chr6_2:80835326-80835345 Msa0931400:five_prime_UTR 55.0%
CACGGGGAACTCCTCCAGTT+TGG + chr6_2:80831135-80831154 None:intergenic 60.0%
CAAACTGGAGGAGTTCCCCG+TGG - chr6_2:80831133-80831152 Msa0931400:CDS 60.0%
CGGATTCAGCCTCGGGTGTT+CGG + chr6_2:80831511-80831530 None:intergenic 60.0%
AGAACCCGAGAGACACGTGG+CGG - chr6_2:80831742-80831761 Msa0931400:intron 60.0%
GATTCCGCCACGTGTCTCTC+GGG + chr6_2:80831749-80831768 None:intergenic 60.0%
! GAGAGACACGTGGCGGAATC+TGG - chr6_2:80831749-80831768 Msa0931400:intron 60.0%
! GGGTTAGGGTTAGCGTCGAG+TGG - chr6_2:80831989-80832008 Msa0931400:intron 60.0%
GGCCCAGATGGAGGATAGGA+AGG + chr6_2:80833070-80833089 None:intergenic 60.0%
TGGTGGCCCAGATGGAGGAT+AGG + chr6_2:80833074-80833093 None:intergenic 60.0%
TGCGGAGCTCCAATCCGACT+TGG + chr6_2:80834827-80834846 None:intergenic 60.0%
CTCGGTGGTGAAGGTGGAGC+CGG + chr6_2:80831890-80831909 None:intergenic 65.0%
CTGCGGGGGCTCCAAACTGG+AGG - chr6_2:80831121-80831140 Msa0931400:CDS 70.0%
GCAGGCGTAGAAGGTCCCGC+CGG + chr6_2:80831851-80831870 None:intergenic 70.0%
GGTGAAGGTGGAGCCGGAGC+CGG + chr6_2:80831884-80831903 None:intergenic 70.0%
GGGCTGCGGGGGCTCCAAAC+TGG - chr6_2:80831118-80831137 Msa0931400:CDS 75.0%
GGAGGCGGCGCAGGCGTAGA+AGG + chr6_2:80831860-80831879 None:intergenic 75.0%
GAAGGTGGAGCCGGAGCCGG+CGG + chr6_2:80831881-80831900 None:intergenic 75.0%
! TACGCCTGCGCCGCCTCCGC+CGG - chr6_2:80831862-80831881 Msa0931400:intron 80.0%
!!! TGCGCCGCCTCCGCCGGCTC+CGG - chr6_2:80831868-80831887 Msa0931400:intron 85.0%
! GGAGCCGGAGCCGGCGGAGG+CGG + chr6_2:80831875-80831894 None:intergenic 85.0%
! GGTGGAGCCGGAGCCGGCGG+AGG + chr6_2:80831878-80831897 None:intergenic 85.0%
! GGAGCCGGCGGAGGCGGCGC+AGG + chr6_2:80831869-80831888 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 80830537 80835601 80830537 ID=Msa0931400;Name=Msa0931400
chr6_2 mRNA 80830537 80835601 80830537 ID=Msa0931400-mRNA-1;Parent=Msa0931400;Name=Msa0931400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=579|0|0.5|0.75|0.66|1|4|262|861
chr6_2 exon 80830537 80831594 80830537 ID=Msa0931400-mRNA-1:exon:14168;Parent=Msa0931400-mRNA-1
chr6_2 exon 80832183 80832454 80832183 ID=Msa0931400-mRNA-1:exon:14167;Parent=Msa0931400-mRNA-1
chr6_2 exon 80833307 80833347 80833307 ID=Msa0931400-mRNA-1:exon:14166;Parent=Msa0931400-mRNA-1
chr6_2 exon 80833546 80835601 80833546 ID=Msa0931400-mRNA-1:exon:14165;Parent=Msa0931400-mRNA-1
chr6_2 five_prime_UTR 80835023 80835601 80835023 ID=Msa0931400-mRNA-1:five_prime_utr;Parent=Msa0931400-mRNA-1
chr6_2 CDS 80833546 80835022 80833546 ID=Msa0931400-mRNA-1:cds;Parent=Msa0931400-mRNA-1
chr6_2 CDS 80833307 80833347 80833307 ID=Msa0931400-mRNA-1:cds;Parent=Msa0931400-mRNA-1
chr6_2 CDS 80832183 80832454 80832183 ID=Msa0931400-mRNA-1:cds;Parent=Msa0931400-mRNA-1
chr6_2 CDS 80830799 80831594 80830799 ID=Msa0931400-mRNA-1:cds;Parent=Msa0931400-mRNA-1
chr6_2 three_prime_UTR 80830537 80830798 80830537 ID=Msa0931400-mRNA-1:three_prime_utr;Parent=Msa0931400-mRNA-1
Gene Sequence

>Msa0931400

ATGGGCTGCGGGGGCTCCAAACTGGAGGAGTTCCCCGTGGTAACTCTTTGCAGAGAACGCAAAAACTTTCTCAAAAACGCTTCCGATCAACGTTACGCTCTCGCCGCCGCGCATCTCTCTTATTTACAGTCTCTCAGAGACATCGGAGAAGCTCTGAGGAGATTCTCCGATCAAGATCTTTTTCTTCCAACTGGTTCTACTCCTTCTTCTTCTTCAATTTCTTCCCCTGTTCTCACATTGCCTTCTCGTGAAGGTAAATCCTCTAAAAATAGTAGTAACCACCATGATGATCATGATCTTGAGTACGATGATGATTCTCATTTGAATCTTTCTTCTGGATCGGAGTTGAGTTCACCTTCTTCAGATCATGTTCATCATCATCAACATGAACACCGAACACCCGAGGCTGAATCCGAACCTGAACGAGAACAAGAACAAGAAAGAGGATTTGAATATGGACACGAACCTCAATACGAACACCAACCCGAACCATCTTCTTCTTACGGGTATAATTATCCATATCCATATCCATATCAACAAGATTGGAATCAAAATCAACCAGGGGTTAATAGTTATGCTTATTATATGAAGAAATCTGCACCACGTGGAAAATCTGTGATCTATCAAGAACCCGAGAGACACGTGGCGGAATCTGGACAATGGACTGGTTCTCCTTATGGTGGTTATGGGTATAATGGTATGAATGGAGGTAATAGTGGTTTTTTTGGTTTTCCGGCGGGACCTTCTACGCCTGCGCCGCCTCCGCCGGCTCCGGCTCCACCTTCACCACCGAGAGTTTCTACTTGGGATTTTCTTAACTTTTTTGAGAGTGTTGACAATAATAATTATTCTGGTTATGGAAGTTATGGATTAGGGTTAGGGTTAGCGTCGAGTGGGAGTAGTCCTGATTCAAAAGAAGTGAGGGAGAGAGAAGGGATTCCTGAATTAGAAGATGAGACGGAACAGGAAACTGTGAAGGAGGTTCGTCATGAGGAGAAGAAGAAGAAAGTGGCAGAGGAAGTGGAGAAAGAAAAGGAAGAGGTTGTTAAGGGTGGAGATTTTGGTGAAGGTACTTCGAATTCGAAGGAAGTGCCATTGCAACAGGTGAGTAGTAGTGAGGGAAGTTCCAAAACGGTGCGGTTTCATAGTAGCGAAGGTAGTGGTGATTCGATTTCTTCTAGTGAAAAATTGAGTCCTGATAATGTTGTTCCTAAAGGATCTCCTCCTAGAAAGAAAGGGGTGAGTTTTGAGATTGAGGGTGATGAAGATGCGACGGTTACAACAGTAGAGGTTGATGGTGAATCTTCTATGTTGAGTAGCTTAAGCACTTTGTCTCCACATGGAACTAGGGATCTAAAAGAGGTTGTTAGGGAAATTAGAGATGAGTTTGAGACTGCTTCTAATCATGGAAGAGAGGTTGCATTTCTTCTCGAGGTTTACAAACCACCTTATCAGTCAAGACTTGCTGCATTTAGAGTTTTGTGCTTCAAGAAAATGCAGTTGCAGTTTGATTTGAAGGATGAAGAGAGGTTAAGAGCTATTTATGAGAAGCAATGCAAGAGATTGAAAGCATTGGATAATCGAGGAGCCGAAGCTACTAAAATTGATGCTACTGAGTCATCAATACGAAAGTTGCTAACAAAGATAAACATTTGCATCAAAAGTGTTGAAACTATATCAGGGAGGATACATAAACTGAGGGATGAAGAATTAGAGCCTCAGCTTGCAGCATTAATTAATGGGTATGAAATTGCTTCACTTATTCACTACTATGTTAATATTCATCTCCTATTGATAAGAATGTGGAAATTCATGTTCCAATGCCACCAGAAACAGTTCCAGGCTATCATGGAGAGTAAAACTCAATCTCTCAAATTAAACACTGGTTTGCAAAGAGATGAAGGTTTGAAAGCCATTATAGAACTTGAAAGGGAGCTTCTGAATTGGTGCACACAGTTCAACAATTGGGTCAGGACTCAAAAATCTTATGTTGAAAATTTGAATGGGTGGCTCAGAAGGTGCCTTCTTGATGAACCTGAAGAAACAGATGATGGTGTTGCCCCTTACTCTCCAAGTCGGATTGGAGCTCCGCAAGCTTTCATTATCTGCAATGATTGGCAGCAAGCAATGAATAGAATTTCAGAAAGAGGGGTGGCAGATGCTATGGGCGAATTTGCTCAAAAGCTGCATGAGCTATGGGAGAAACAAGATGAGGAACAAAGGCGGAAAATCAGGGCAGAGTATCTCACAAAGGATTTTGAGAAACAACTTAGAGCTTTGCGCACCGAAATGGGAGCCTCAAAACACGAGCATGACAAAGTTTCAGGGAAGACTTCATTGTCGAAGTTCAATTCTGATAGTGGTGTTTCGCCACTGGATGATCTAAAGGTGGATTTAGATTCTATGAAGAAGAAATTGCATGATGAGAGGGCCAAACATAAGGAAGCCATTAGGCTTGTCCGTGATGCAGCTTCTAATAGTTTACAAACTGGTTTGGTTCCCATTTTTAAGACCTTAGAAAGTTTCACTTCAGAGGTGGTGAAAGCTCATGAGGAAGTCAGACTTCAAAATGCTGCAGCCTCGTAG
Protein sequence

>Msa0931400

MGCGGSKLEEFPVVTLCRERKNFLKNASDQRYALAAAHLSYLQSLRDIGEALRRFSDQDLFLPTGSTPSSSSISSPVLTLPSREGKSSKNSSNHHDDHDLEYDDDSHLNLSSGSELSSPSSDHVHHHQHEHRTPEAESEPEREQEQERGFEYGHEPQYEHQPEPSSSYGYNYPYPYPYQQDWNQNQPGVNSYAYYMKKSAPRGKSVIYQEPERHVAESGQWTGSPYGGYGYNGMNGGNSGFFGFPAGPSTPAPPPPAPAPPSPPRVSTWDFLNFFESVDNNNYSGYGSYGLGLGLASSGSSPDSKEVREREGIPELEDETEQETVKEVRHEEKKKKVAEEVEKEKEEVVKGGDFGEGTSNSKEVPLQQVSSSEGSSKTVRFHSSEGSGDSISSSEKLSPDNVVPKGSPPRKKGVSFEIEGDEDATVTTVEVDGESSMLSSLSTLSPHGTRDLKEVVREIRDEFETASNHGREVAFLLEVYKPPYQSRLAAFRVLCFKKMQLQFDLKDEERLRAIYEKQCKRLKALDNRGAEATKIDATESSIRKLLTKINICIKSVETISGRIHKLRDEELEPQLAALINGYEIASLIHYYVNIHLLLIRMWKFMFQCHQKQFQAIMESKTQSLKLNTGLQRDEGLKAIIELERELLNWCTQFNNWVRTQKSYVENLNGWLRRCLLDEPEETDDGVAPYSPSRIGAPQAFIICNDWQQAMNRISERGVADAMGEFAQKLHELWEKQDEEQRRKIRAEYLTKDFEKQLRALRTEMGASKHEHDKVSGKTSLSKFNSDSGVSPLDDLKVDLDSMKKKLHDERAKHKEAIRLVRDAASNSLQTGLVPIFKTLESFTSEVVKAHEEVRLQNAAAS*