AlfalfaGEDB | Msa0249850

M. sativa cultivar zhongmu-4 / Msa0249850

KEGG: K10393
GO: GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0000902 GO:0000904 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005794 GO:0005795 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005886 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0007080 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008608 GO:0009505 GO:0009531 GO:0009653 GO:0009832 GO:0009834 GO:0009888 GO:0009987 GO:0010026 GO:0010087 GO:0010089 GO:0010090 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030154 GO:0030312 GO:0030951 GO:0030952 GO:0031109 GO:0031984 GO:0032502 GO:0032984 GO:0032989 GO:0032991 GO:0035371 GO:0042546 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043624 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048468 GO:0048856 GO:0048869 GO:0050000 GO:0050789 GO:0050794 GO:0051010 GO:0051179 GO:0051234 GO:0051261 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051983 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0090058 GO:0090558 GO:0090626 GO:0097435 GO:0098687 GO:0098791 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1903047 GO:1903338 GO:1990752
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0249850	XP_013463240.1	86.538	52	7	0	1	52	552	603	3.29e-19	95.9
Msa0249850	XP_013463240.1	98.876	178	2	0	1	178	621	798	4.16e-116	357

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0249850	sp\|Q940B8\|KN13A_ARATH	65.193	181	58	3	3	178	614	794	1.47e-66	219

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0249850	A0A072V7C8	86.538	52	7	0	1	52	552	603	1.57e-19	95.9
Msa0249850	A0A072V7C8	98.876	178	2	0	1	178	621	798	1.99e-116	357

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001800	Msa0249850	0.835172	1.958305e-56	-8.615850e-47
Msa0002420	Msa0249850	0.822691	2.068594e-53	-8.615850e-47
Msa0022260	Msa0249850	0.806069	9.840408e-50	-8.615850e-47
Msa0029380	Msa0249850	0.808793	2.601424e-50	-8.615850e-47
Msa0038940	Msa0249850	0.835988	1.217955e-56	-8.615850e-47
Msa0044160	Msa0249850	0.812650	3.810822e-51	-8.615850e-47
Msa0044780	Msa0249850	-0.810961	8.885960e-51	-8.615850e-47
Msa0048510	Msa0249850	0.803035	4.225060e-49	-8.615850e-47
Msa0074360	Msa0249850	0.819179	1.330201e-52	-8.615850e-47
Msa0077340	Msa0249850	0.848692	5.212372e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0249850	MtrunA17_Chr2g0295881	98.876	178	2	0	1	178	701	878	2.26e-119	357
Msa0249850	MtrunA17_Chr2g0295881	86.538	52	7	0	1	52	632	683	2.63e-23	95.9
Msa0249850	MtrunA17_Chr4g0067421	79.651	172	34	1	7	178	643	813	2.53e-85	267
Msa0249850	MtrunA17_Chr2g0331761	39.490	157	64	4	22	171	562	694	9.48e-26	102
Msa0249850	MtrunA17_Chr6g0485471	50.549	91	45	0	82	172	582	672	6.19e-20	86.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0249850	AT3G16630.2	65.193	181	58	3	3	178	614	794	1.49e-67	219
Msa0249850	AT3G16630.1	65.193	181	58	3	3	178	614	794	1.49e-67	219
Msa0249850	AT4G15885.1	77.477	111	24	1	69	178	3	113	6.67e-54	167
Msa0249850	AT3G16060.1	55.682	88	39	0	84	171	591	678	1.14e-27	108

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Find 233 sgRNAs with CRISPR-Local

Find 612 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTTGCATGAGGGAAGA+TGG	0.501921	2_2:-37607819	Msa0249850:five_prime_UTR
AAATATTGTAATTTGTATGT+AGG	0.423461	2_2:-37604405	Msa0249850:three_prime_UTR
AAATGAAATAGAATCTAATG+CGG	0.687168	2_2:-37604341	Msa0249850:three_prime_UTR
AAATGATGCAAGAAGTGGGA+AGG	0.654261	2_2:-37607586	Msa0249850:five_prime_UTR
AACAGTGTTGTGATTCGATG+TGG	0.644511	2_2:+37605330	None:intergenic
AACCAGAGAATGGCGTTTGT+TGG	0.440589	2_2:+37613653	None:intergenic
AACCTCTCCCTCTCCATTGA+AGG	0.426175	2_2:+37605744	None:intergenic
AAGCACAATGAGGTGAAAGA+GGG	0.617798	2_2:-37607633	Msa0249850:five_prime_UTR
AAGCACTAATTGCCGCTCAT+AGG	0.460152	2_2:-37605135	Msa0249850:CDS
AAGCGAAACTCAAACACTGA+TGG	0.608067	2_2:-37607609	Msa0249850:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTGTAACACTTGCTTATT+TGG	-	chr2_2:37604944-37604963	Msa0249850:intron	30.0%
GAGTATATGTTTCGTGAAAT+TGG	-	chr2_2:37605298-37605317	Msa0249850:CDS	30.0%
TTGAGATGTACTCTAATTTG+AGG	-	chr2_2:37605324-37605343	Msa0249850:CDS	30.0%
TGAGATGTACTCTAATTTGA+GGG	-	chr2_2:37605325-37605344	Msa0249850:CDS	30.0%
CCTCTCTAACAAATACATAT+TGG	+	chr2_2:37605364-37605383	None:intergenic	30.0%
AGGCATAATAGGATTAGAAT+TGG	-	chr2_2:37605563-37605582	Msa0249850:five_prime_UTR	30.0%
AGAATTGGAAATGACAACAT+TGG	-	chr2_2:37605578-37605597	Msa0249850:five_prime_UTR	30.0%
TTTACATTTGTGTGTAGTGT+GGG	-	chr2_2:37605908-37605927	Msa0249850:five_prime_UTR	30.0%
TTTATATGGTACATGTGGTA+GGG	-	chr2_2:37605997-37606016	Msa0249850:five_prime_UTR	30.0%
TTCTATTCTCCTGAATTTAG+AGG	-	chr2_2:37606156-37606175	Msa0249850:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	37604170	37613848	37604170	ID=Msa0249850;Name=Msa0249850
chr2_2	mRNA	37604170	37613848	37604170	ID=Msa0249850-mRNA-1;Parent=Msa0249850;Name=Msa0249850-mRNA-1;_AED=0.13;_eAED=0.13;_QI=2462\|1\|1\|1\|0.76\|0.5\|14\|428\|178
chr2_2	exon	37604170	37604582	37604170	ID=Msa0249850-mRNA-1:exon:11899;Parent=Msa0249850-mRNA-1
chr2_2	exon	37604683	37604880	37604683	ID=Msa0249850-mRNA-1:exon:11898;Parent=Msa0249850-mRNA-1
chr2_2	exon	37605099	37605164	37605099	ID=Msa0249850-mRNA-1:exon:11897;Parent=Msa0249850-mRNA-1
chr2_2	exon	37605264	37606046	37605264	ID=Msa0249850-mRNA-1:exon:11896;Parent=Msa0249850-mRNA-1
chr2_2	exon	37606136	37606354	37606136	ID=Msa0249850-mRNA-1:exon:11895;Parent=Msa0249850-mRNA-1
chr2_2	exon	37607507	37607842	37607507	ID=Msa0249850-mRNA-1:exon:11894;Parent=Msa0249850-mRNA-1
chr2_2	exon	37608689	37608851	37608689	ID=Msa0249850-mRNA-1:exon:11893;Parent=Msa0249850-mRNA-1
chr2_2	exon	37609557	37609638	37609557	ID=Msa0249850-mRNA-1:exon:11892;Parent=Msa0249850-mRNA-1
chr2_2	exon	37609881	37609958	37609881	ID=Msa0249850-mRNA-1:exon:11891;Parent=Msa0249850-mRNA-1
chr2_2	exon	37610108	37610212	37610108	ID=Msa0249850-mRNA-1:exon:11890;Parent=Msa0249850-mRNA-1
chr2_2	exon	37611182	37611370	37611182	ID=Msa0249850-mRNA-1:exon:11889;Parent=Msa0249850-mRNA-1
chr2_2	exon	37611779	37612000	37611779	ID=Msa0249850-mRNA-1:exon:11888;Parent=Msa0249850-mRNA-1
chr2_2	exon	37613161	37613424	37613161	ID=Msa0249850-mRNA-1:exon:11887;Parent=Msa0249850-mRNA-1
chr2_2	exon	37613540	37613848	37613540	ID=Msa0249850-mRNA-1:exon:11886;Parent=Msa0249850-mRNA-1
chr2_2	five_prime_UTR	37613540	37613848	37613540	ID=Msa0249850-mRNA-1:five_prime_utr;Parent=Msa0249850-mRNA-1
chr2_2	five_prime_UTR	37613161	37613424	37613161	ID=Msa0249850-mRNA-1:five_prime_utr;Parent=Msa0249850-mRNA-1
chr2_2	five_prime_UTR	37611779	37612000	37611779	ID=Msa0249850-mRNA-1:five_prime_utr;Parent=Msa0249850-mRNA-1
chr2_2	five_prime_UTR	37611182	37611370	37611182	ID=Msa0249850-mRNA-1:five_prime_utr;Parent=Msa0249850-mRNA-1
chr2_2	five_prime_UTR	37610108	37610212	37610108	ID=Msa0249850-mRNA-1:five_prime_utr;Parent=Msa0249850-mRNA-1
chr2_2	five_prime_UTR	37609881	37609958	37609881	ID=Msa0249850-mRNA-1:five_prime_utr;Parent=Msa0249850-mRNA-1
chr2_2	five_prime_UTR	37609557	37609638	37609557	ID=Msa0249850-mRNA-1:five_prime_utr;Parent=Msa0249850-mRNA-1
chr2_2	five_prime_UTR	37608689	37608851	37608689	ID=Msa0249850-mRNA-1:five_prime_utr;Parent=Msa0249850-mRNA-1
chr2_2	five_prime_UTR	37607507	37607842	37607507	ID=Msa0249850-mRNA-1:five_prime_utr;Parent=Msa0249850-mRNA-1
chr2_2	five_prime_UTR	37606136	37606354	37606136	ID=Msa0249850-mRNA-1:five_prime_utr;Parent=Msa0249850-mRNA-1
chr2_2	five_prime_UTR	37605552	37606046	37605552	ID=Msa0249850-mRNA-1:five_prime_utr;Parent=Msa0249850-mRNA-1
chr2_2	CDS	37605264	37605551	37605264	ID=Msa0249850-mRNA-1:cds;Parent=Msa0249850-mRNA-1
chr2_2	CDS	37605099	37605164	37605099	ID=Msa0249850-mRNA-1:cds;Parent=Msa0249850-mRNA-1
chr2_2	CDS	37604698	37604880	37604698	ID=Msa0249850-mRNA-1:cds;Parent=Msa0249850-mRNA-1
chr2_2	three_prime_UTR	37604683	37604697	37604683	ID=Msa0249850-mRNA-1:three_prime_utr;Parent=Msa0249850-mRNA-1
chr2_2	three_prime_UTR	37604170	37604582	37604170	ID=Msa0249850-mRNA-1:three_prime_utr;Parent=Msa0249850-mRNA-1

Gene Sequence

>Msa0249850

ATGAAGAACTCTTATAATGATTCTTCGAGTCCAAAGATGAACTCTTACCCACGAAATGATACAGATGAGAAAGTGCAAAAGGTTTCTCCCCCACGCAGAAAAGGTTTTAAAGATGAAAAGTCTGAAAGGCCTGCAAACTTGATGAAAAGGGATACCAATGCTTCTGATCTCTCGACCACAAGCTCCAGGCAACAGCAAACCACATCGAATCACAACACTGTTACCTCTGGATCCAGGCTTTATGACGCAGAGTCCGCACCTGACGTGAATATCAATGCAGTACTTGAGGAGGAAGAAGCACTAATTGCCGCTCATAGGAAAGAAATCGAGGACACGATGGAGATTGTTCGTGAAGAAATGAAACTCTTGGCCGAAGTTGACCAACCAGGTAGCCGTATTGACAACTATGTAGCCCAATTGAGCTTTGTGCTTTCTCGCAAAGCAGCTAGTCTTGTGGGTCTTCAAGCTCGCCTTGCAAGATTCCAACATCGACTAAAAGAACAGGAAATTCTGAGTAGAAAAAGAGTTCCCCGTTGA

Protein sequence

>Msa0249850

MKNSYNDSSSPKMNSYPRNDTDEKVQKVSPPRRKGFKDEKSERPANLMKRDTNASDLSTTSSRQQQTTSNHNTVTSGSRLYDAESAPDVNINAVLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSRIDNYVAQLSFVLSRKAASLVGLQARLARFQHRLKEQEILSRKRVPR*