AlfalfaGEDB | Msa0515520

M. sativa cultivar zhongmu-4 / Msa0515520

KEGG: -
GO: -
PFAM: PF04783.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0515520	XP_013461275.2	82.688	930	70	13	1	862	1	907	0.0	1256

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0515520	sp\|Q9AQW1\|REL2_ORYSJ	26.757	370	239	7	493	854	414	759	1.54e-35	148

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0515520	A0A396IYF6	82.688	930	70	13	1	862	1	907	0.0	1256

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0124910	Msa0515520	0.809121	2.212744e-50	-8.615850e-47
Msa0142430	Msa0515520	0.801202	1.006230e-48	-8.615850e-47
Msa0204950	Msa0515520	0.808875	2.497820e-50	-8.615850e-47
Msa0249850	Msa0515520	0.806275	8.903019e-50	-8.615850e-47
Msa0263780	Msa0515520	0.822819	1.932045e-53	-8.615850e-47
Msa0288620	Msa0515520	0.808778	2.619867e-50	-8.615850e-47
Msa0301520	Msa0515520	0.818954	1.496866e-52	-8.615850e-47
Msa0320600	Msa0515520	0.818662	1.743428e-52	-8.615850e-47
Msa0339020	Msa0515520	0.837450	5.162060e-57	-8.615850e-47
Msa0374310	Msa0515520	0.870629	1.263161e-66	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0515520	MtrunA17_Chr3g0124841	82.688	930	70	13	1	862	1	907	0.0	1256
Msa0515520	MtrunA17_Chr5g0448571	33.259	448	211	7	449	851	352	756	1.76e-65	234
Msa0515520	MtrunA17_Chr5g0448571	54.237	59	27	0	1	59	1	59	4.28e-13	73.2
Msa0515520	MtrunA17_Chr3g0130761	31.481	486	248	9	435	861	322	781	6.37e-61	221
Msa0515520	MtrunA17_Chr3g0143731	29.659	381	204	5	485	857	358	682	1.58e-44	171
Msa0515520	MtrunA17_Chr4g0072011	26.829	574	298	13	238	740	140	662	9.36e-40	157
Msa0515520	MtrunA17_Chr4g0052471	79.775	89	15	1	498	586	110	195	3.73e-38	141
Msa0515520	MtrunA17_Chr4g0052471	90.909	44	4	0	452	495	5	48	1.29e-19	87.8
Msa0515520	MtrunA17_Chr1g0211271	27.298	359	225	6	505	854	388	719	7.64e-36	145
Msa0515520	MtrunA17_Chr7g0250681	24.891	458	263	10	451	854	405	835	3.68e-32	134

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0515520	AT1G21740.1	46.421	978	369	28	1	857	1	944	0.0	675
Msa0515520	AT1G77500.1	45.664	957	346	21	1	862	1	878	0.0	620
Msa0515520	AT4G35240.4	31.809	940	442	26	1	854	1	827	2.47e-92	310
Msa0515520	AT4G35240.3	31.809	940	442	26	1	854	1	827	2.47e-92	310
Msa0515520	AT4G35240.2	31.809	940	442	26	1	854	1	827	7.35e-92	309
Msa0515520	AT4G35240.1	31.809	940	442	26	1	854	1	827	7.35e-92	309
Msa0515520	AT2G17110.1	35.043	351	176	4	501	851	414	712	3.56e-55	204
Msa0515520	AT2G17110.1	54.545	55	25	0	1	55	1	55	1.25e-11	68.9
Msa0515520	AT5G54480.1	28.169	355	204	5	501	854	411	715	3.83e-39	156
Msa0515520	AT3G51290.3	25.143	350	228	4	505	854	306	621	3.20e-32	134

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Find 275 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGTTGAAACTATATC+AGG	0.292364	3_4:-66763797	Msa0515520:CDS
AAACGCGTGAAAATTAGTGA+AGG	0.665024	3_4:+66766738	None:intergenic
AAACTCACCCCTTTCTTTCT+AGG	0.194413	3_4:+66765282	None:intergenic
AAAGAAGTGAGGGAGAGAGA+AGG	0.482867	3_4:-66765594	Msa0515520:CDS
AAAGTGTTGAAACTATATCA+GGG	0.605560	3_4:-66763796	Msa0515520:CDS
AAATCCCAAGTAGAAACTCT+CGG	0.615723	3_4:+66765717	None:intergenic
AACAAGATGAGGAACAAAGG+CGG	0.639484	3_4:-66762665	Msa0515520:CDS
AACTATTAGAAGCTGCATCA+CGG	0.624613	3_4:+66762409	None:intergenic
AACTCTAGCTGCAAAATTGG+TGG	0.487478	3_4:+66762258	None:intergenic
AAGAAGAAGATGGTTCGGGT+TGG	0.651087	3_4:+66766027	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGCATTTGCATTTGCATT+TGG	+	chr3_4:66762062-66762081	None:intergenic	30.0%
GTATATAGTTAGGAAATTGG+TGG	+	chr3_4:66762117-66762136	None:intergenic	30.0%
GGAGTATATAGTTAGGAAAT+TGG	+	chr3_4:66762120-66762139	None:intergenic	30.0%
TGTTGTTGGAGTATATAGTT+AGG	+	chr3_4:66762127-66762146	None:intergenic	30.0%
AATTATAACAGAAAGAGCCA+AGG	+	chr3_4:66762281-66762300	None:intergenic	30.0%
GTGAAAATTAGTGAAGGAAA+AGG	+	chr3_4:66762375-66762394	None:intergenic	30.0%
AGCATAATGAAGGAAAGAAA+TGG	+	chr3_4:66762538-66762557	None:intergenic	30.0%
TGGAAGAAAAAGATCTTGAT+CGG	+	chr3_4:66762776-66762795	None:intergenic	30.0%
TCTCATTTGAATCTTTCTTC+TGG	-	chr3_4:66762931-66762950	Msa0515520:CDS	30.0%
TTTGAATCTTTCTTCTGGAT+CGG	-	chr3_4:66762936-66762955	Msa0515520:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	66762043	66767095	66762043	ID=Msa0515520;Name=Msa0515520
chr3_4	mRNA	66762043	66767095	66762043	ID=Msa0515520-mRNA-1;Parent=Msa0515520;Name=Msa0515520-mRNA-1;_AED=0.05;_eAED=0.05;_QI=564\|0\|0.5\|0.75\|0.66\|1\|4\|262\|862
chr3_4	exon	66762043	66763100	66762043	ID=Msa0515520-mRNA-1:exon:17238;Parent=Msa0515520-mRNA-1
chr3_4	exon	66763689	66763960	66763689	ID=Msa0515520-mRNA-1:exon:17237;Parent=Msa0515520-mRNA-1
chr3_4	exon	66764813	66764853	66764813	ID=Msa0515520-mRNA-1:exon:17236;Parent=Msa0515520-mRNA-1
chr3_4	exon	66765052	66767095	66765052	ID=Msa0515520-mRNA-1:exon:17235;Parent=Msa0515520-mRNA-1
chr3_4	five_prime_UTR	66766532	66767095	66766532	ID=Msa0515520-mRNA-1:five_prime_utr;Parent=Msa0515520-mRNA-1
chr3_4	CDS	66765052	66766531	66765052	ID=Msa0515520-mRNA-1:cds;Parent=Msa0515520-mRNA-1
chr3_4	CDS	66764813	66764853	66764813	ID=Msa0515520-mRNA-1:cds;Parent=Msa0515520-mRNA-1
chr3_4	CDS	66763689	66763960	66763689	ID=Msa0515520-mRNA-1:cds;Parent=Msa0515520-mRNA-1
chr3_4	CDS	66762305	66763100	66762305	ID=Msa0515520-mRNA-1:cds;Parent=Msa0515520-mRNA-1
chr3_4	three_prime_UTR	66762043	66762304	66762043	ID=Msa0515520-mRNA-1:three_prime_utr;Parent=Msa0515520-mRNA-1

Gene Sequence

>Msa0515520

ATGGGCTGCGGGGGCTCCAAACTGGAGGAGTTCCCCGTGGTAACTCTCTGCAGAGAACGCAAAAACTTTCTCAAAAACGCTTCCGATCAACGATACGCTCTCGCCGCCGCGCATCTTTCTTATTTACAGTCTCTCAGAGACATCGGAGAAGCTCTGAGGAGATTCTCCGATCAAGATCTTTTTCTTCCAACTGGTTCTACTCCTTCTTCTTCTTCTTCTTCTTCAATTTCTTCCCCTGTTCTCACATTGCCTTCTCGTGAAGGTAAATCCTCTAAAAATAGTAGTAACCACCATGATGATCATGATCTTGAGTACGATGATGATTCTCATTTGAATCTTTCTTCTGGATCGGAGTTGAGTTCACCTTCTTCAGATCATGTTCATCATCATCAACATGAACACCGAACACCCGAAGCTGAATCCGAACCTGAACGAGAACAAGAAAGAGGATTTGAATATGGACACGAACCTCAATACGAACACCAACCCGAACCATCTTCTTCTTACGGGTATAATTATCCATATCCATATCCATATCAGCAAGATTGGAATCAAAATCAACCAGGGGTTAATAGTTATGCTTATTATATGAAGAAATCTGCACCACGTGGAAAATCTGTGATCTATCAAGAACCCGAGAGACACGTGGCGGAATCTGGACAATGGACTGGTTCTCCTTATGGTGGTTATGGGTATAATGGTATGAATGGAGGTAATAGTGGTTTTTTTGGTTTTCCGGCGGGACCTTCTACGCCTGCGCCGCCTCCGCCGGCTCCGGCTCCACCTTCACCACCGAGAGTTTCTACTTGGGATTTTCTTAACTTTTTTGAGAGTGTTGACAATAATAATTATTCTGGTTATGGAAGTTATGGATTAGGGCTAGGGTTAGCGTCGAGTGGGAGTAGTCCTGATTCAAAAGAAGTGAGGGAGAGAGAAGGGATTCCTGAATTAGAAGATGAGACGGAACAGGAAACTGTGAAGGAGGTTCGTCATGAGAAGAAGAAGAAGAAAGTGGCAGAGGAAGTGGAGAAAGAAAAGGAAGAGGTTGTTAAGGGTGGAGATTTTGGTGAAGGTACTTCGAATTCGAAGGAAGTGCCATTGCAACAGGTGAGTAGTAGTGAGGGAAGTTCCAAAACGGTGCGGTTTCATAGTAGCGAAGGTAGTGGTGATTCGATTTCTTCTAGTGAAAAATTGAGTCCTGATAATGTTGTTCCTAAAGGATCTCCTCCTAGAAAGAAAGGGGTGAGTTTTGAGATTGAGGGTGATGAAGATGCGACGGTTACAACAGTAGAGGTTGATGGTGAATCTTCTATGTTGAGTAGCTTAAGCACTTTGTCTCCACATGGAACTAGGGATCTAAAAGAGGTTGTTAGGGAAATTAGAGATGAGTTTGAGACTGCTTCTAATCATGGAAGAGAGGTTGCATTTCTTCTCGAGGTTTACAAACCACCTTATCAGTCAAGACTTGCTGCATTTAGAGTTTTGTGCTTCAAGAAAATGCAGTTGCAGTTTGATTTGAAGGATGAAGAGAGGTTAAGAGCTATTTATGAGAAGCAATGCAAGAGATTGAAAGCATTGGATAATCGAGGAGCCGAAGCTACTAAAATTGATGCTACTGAGTCATCAATACGAAAGTTGCTAACAAAGATAAACATTTGCATCAAAAGTGTTGAAACTATATCAGGGAGGATACATAAACTGAGGGATGAAGAATTAGAGCCTCAGCTTGCAGCATTAATTAATGGGTATGAAATTGCTTCACTTATTCACTACTATGTTAATATTCATCTCCTATTGATAAGAATGTGGAAATTCATGTTCCAATGCCACCAGAAACAGTTCCAGGCTATCATGGAGAGTAAAACTCAATCTCTCAAATTAAACACTGGTTTGCAAAGAGATGAAGGTTTGAAAGCCATTATAGAACTTGAAAGGGAGCTTCTGAATTGGTGCACACAGTTCAACAATTGGGTCAGGACTCAAAAATCTTATGTTGAAAATTTGAATGGGTGGCTCAGAAGGTGCCTTCTTGATGAACCTGAAGAAACAGATGATGGTGTTGCCCCTTACTCTCCAAGTCGGATTGGAGCTCCGCAAGCTTTCATTATCTGCAATGATTGGCAGCAAGCAATGAATAGAATTTCAGAAAGAGGGGTGGCAGATGCTATGGGCGAATTTGCTCAAAAGCTGCATGAGCTATGGGAGAAACAAGATGAGGAACAAAGGCGGAAAATCAGGGCAGAGTATCTCACAAAGGATTTTGAGAAACAACTTAGAGCTTTGCGCACCGAAATGGGAGCCTCAAAACACGAGCATGACAAAGTTTCAGGGAAGACTTCATTGTCGAAGTTCAATTCTGATAGTGGTGTTTCGCCACTGGATGATCTAAAGGTGGATTTAGATTCTATGAAGAAGAAATTGCATGATGAGAGGGCCAAACATAAGGAAGCCATTAGGCTTGTCCGTGATGCAGCTTCTAATAGTTTACAAACTGGTTTGGTTCCCATTTTTAAGACCTTAGAAAGTTTCACTTCAGAGGTGGTGAAAGCTCATGAGGAAGTCAGACTTCAAAATGCTGCAGCCTCGTAG

Protein sequence

>Msa0515520

MGCGGSKLEEFPVVTLCRERKNFLKNASDQRYALAAAHLSYLQSLRDIGEALRRFSDQDLFLPTGSTPSSSSSSSISSPVLTLPSREGKSSKNSSNHHDDHDLEYDDDSHLNLSSGSELSSPSSDHVHHHQHEHRTPEAESEPEREQERGFEYGHEPQYEHQPEPSSSYGYNYPYPYPYQQDWNQNQPGVNSYAYYMKKSAPRGKSVIYQEPERHVAESGQWTGSPYGGYGYNGMNGGNSGFFGFPAGPSTPAPPPPAPAPPSPPRVSTWDFLNFFESVDNNNYSGYGSYGLGLGLASSGSSPDSKEVREREGIPELEDETEQETVKEVRHEKKKKKVAEEVEKEKEEVVKGGDFGEGTSNSKEVPLQQVSSSEGSSKTVRFHSSEGSGDSISSSEKLSPDNVVPKGSPPRKKGVSFEIEGDEDATVTTVEVDGESSMLSSLSTLSPHGTRDLKEVVREIRDEFETASNHGREVAFLLEVYKPPYQSRLAAFRVLCFKKMQLQFDLKDEERLRAIYEKQCKRLKALDNRGAEATKIDATESSIRKLLTKINICIKSVETISGRIHKLRDEELEPQLAALINGYEIASLIHYYVNIHLLLIRMWKFMFQCHQKQFQAIMESKTQSLKLNTGLQRDEGLKAIIELERELLNWCTQFNNWVRTQKSYVENLNGWLRRCLLDEPEETDDGVAPYSPSRIGAPQAFIICNDWQQAMNRISERGVADAMGEFAQKLHELWEKQDEEQRRKIRAEYLTKDFEKQLRALRTEMGASKHEHDKVSGKTSLSKFNSDSGVSPLDDLKVDLDSMKKKLHDERAKHKEAIRLVRDAASNSLQTGLVPIFKTLESFTSEVVKAHEEVRLQNAAAS*