AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0515520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515520 MtrunA17_Chr3g0124841 82.688 930 70 13 1 862 1 907 0.0 1256
Msa0515520 MtrunA17_Chr5g0448571 33.259 448 211 7 449 851 352 756 1.76e-65 234
Msa0515520 MtrunA17_Chr5g0448571 54.237 59 27 0 1 59 1 59 4.28e-13 73.2
Msa0515520 MtrunA17_Chr3g0130761 31.481 486 248 9 435 861 322 781 6.37e-61 221
Msa0515520 MtrunA17_Chr3g0143731 29.659 381 204 5 485 857 358 682 1.58e-44 171
Msa0515520 MtrunA17_Chr4g0072011 26.829 574 298 13 238 740 140 662 9.36e-40 157
Msa0515520 MtrunA17_Chr4g0052471 79.775 89 15 1 498 586 110 195 3.73e-38 141
Msa0515520 MtrunA17_Chr4g0052471 90.909 44 4 0 452 495 5 48 1.29e-19 87.8
Msa0515520 MtrunA17_Chr1g0211271 27.298 359 225 6 505 854 388 719 7.64e-36 145
Msa0515520 MtrunA17_Chr7g0250681 24.891 458 263 10 451 854 405 835 3.68e-32 134
Msa0515520 MtrunA17_Chr5g0405741 24.370 357 235 6 501 854 307 631 2.25e-30 127
Msa0515520 MtrunA17_Chr2g0298171 33.065 248 137 5 501 737 639 868 2.71e-30 129
Msa0515520 MtrunA17_Chr8g0335341 23.689 553 311 12 368 854 208 715 2.59e-29 125
Msa0515520 MtrunA17_Chr3g0118401 28.185 259 167 4 493 750 452 692 2.94e-29 125
Msa0515520 MtrunA17_Chr3g0118401 45.946 74 34 1 1 68 1 74 1.73e-11 68.2
Msa0515520 MtrunA17_Chr5g0440551 28.163 245 152 4 501 741 443 667 1.17e-27 120
Msa0515520 MtrunA17_Chr5g0440551 54.386 57 26 0 1 57 1 57 1.04e-11 68.9
Msa0515520 MtrunA17_Chr3g0139411 22.590 363 257 5 493 855 363 701 5.60e-22 101
Msa0515520 MtrunA17_Chr8g0382541 35.359 181 93 6 567 744 1 160 1.81e-20 91.7
Msa0515520 MtrunA17_Chr2g0331821 21.585 366 258 7 493 854 408 748 2.14e-19 93.6
Msa0515520 MtrunA17_Chr2g0303521 26.703 367 211 14 506 859 313 634 3.88e-18 89.4
Msa0515520 MtrunA17_Chr8g0382551 40.217 92 50 1 1 87 1 92 6.01e-13 72.0
Msa0515520 MtrunA17_Chr4g0004471 20.912 373 250 9 493 856 212 548 5.52e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515520 AT1G21740.1 46.421 978 369 28 1 857 1 944 0.0 675
Msa0515520 AT1G77500.1 45.664 957 346 21 1 862 1 878 0.0 620
Msa0515520 AT4G35240.4 31.809 940 442 26 1 854 1 827 2.47e-92 310
Msa0515520 AT4G35240.3 31.809 940 442 26 1 854 1 827 2.47e-92 310
Msa0515520 AT4G35240.2 31.809 940 442 26 1 854 1 827 7.35e-92 309
Msa0515520 AT4G35240.1 31.809 940 442 26 1 854 1 827 7.35e-92 309
Msa0515520 AT2G17110.1 35.043 351 176 4 501 851 414 712 3.56e-55 204
Msa0515520 AT2G17110.1 54.545 55 25 0 1 55 1 55 1.25e-11 68.9
Msa0515520 AT5G54480.1 28.169 355 204 5 501 854 411 715 3.83e-39 156
Msa0515520 AT3G51290.3 25.143 350 228 4 505 854 306 621 3.20e-32 134
Msa0515520 AT3G51290.2 25.706 354 229 5 501 854 302 621 4.68e-32 134
Msa0515520 AT1G02110.1 24.439 446 257 10 451 845 270 686 2.77e-30 128
Msa0515520 AT1G20530.1 28.771 358 183 9 452 764 232 562 4.46e-29 124
Msa0515520 AT3G51290.1 24.286 350 225 4 505 854 306 615 6.74e-29 123
Msa0515520 AT4G39790.1 29.536 237 151 1 501 737 386 606 1.50e-28 122
Msa0515520 AT2G27090.2 27.823 248 160 3 501 747 439 668 6.01e-28 121
Msa0515520 AT2G27090.2 42.169 83 46 1 1 83 1 81 7.81e-12 69.7
Msa0515520 AT2G27090.1 27.823 248 160 3 501 747 439 668 6.01e-28 121
Msa0515520 AT2G27090.1 42.169 83 46 1 1 83 1 81 7.81e-12 69.7
Msa0515520 AT4G30130.3 27.158 556 305 18 238 740 133 641 6.60e-28 121
Msa0515520 AT4G30130.1 27.158 556 305 18 238 740 133 641 6.60e-28 121
Msa0515520 AT3G60320.1 23.614 487 289 12 423 854 330 788 7.64e-28 121
Msa0515520 AT2G19090.1 29.323 266 143 5 493 740 486 724 3.85e-25 112
Msa0515520 AT5G25590.1 22.222 459 275 9 452 856 330 760 1.89e-21 100
Msa0515520 AT1G52320.1 21.813 353 244 8 493 840 414 739 3.48e-17 87.0
Msa0515520 AT2G34670.2 22.905 358 231 8 506 854 353 674 4.08e-17 86.7
Msa0515520 AT1G52320.2 21.813 353 244 8 493 840 437 762 7.54e-17 85.9
Msa0515520 AT1G52320.5 21.813 353 244 8 493 840 437 762 7.54e-17 85.9
Msa0515520 AT1G52320.3 21.813 353 244 8 493 840 111 436 2.96e-15 79.7
Msa0515520 AT1G52320.4 21.813 353 244 8 493 840 111 436 2.96e-15 79.7
Msa0515520 AT4G30130.4 28.792 389 219 13 238 589 133 500 1.09e-11 68.9
Msa0515520 AT4G30130.2 28.792 389 219 13 238 589 133 500 1.09e-11 68.9

Find 275 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAGCCTGGAACTGTTTC+TGG 0.194296 3_4:+66763042 None:intergenic
AAACTCACCCCTTTCTTTCT+AGG 0.194413 3_4:+66765282 None:intergenic
CACGAGCATGACAAAGTTTC+AGG 0.222711 3_4:-66762564 Msa0515520:CDS
TCTCATTTGAATCTTTCTTC+TGG 0.225408 3_4:-66766185 Msa0515520:CDS
CAGCTTGCAGCATTAATTAA+TGG 0.228181 3_4:-66763737 Msa0515520:CDS
GGTTCTCCTTATGGTGGTTA+TGG 0.230280 3_4:-66765840 Msa0515520:CDS
GACTGTAGATTGGGTGTTAC+AGG 0.233168 3_4:+66762115 None:intergenic
TGATTCCAATCTTGCTGATA+TGG 0.241496 3_4:+66765978 None:intergenic
GTTGACAATAATAATTATTC+TGG 0.253727 3_4:-66765675 Msa0515520:CDS
ATTAACTCTAGCTGCAAAAT+TGG 0.254729 3_4:+66762255 None:intergenic
GAAGAGGTTGTGTTTGTTAC+TGG 0.258512 3_4:+66766707 None:intergenic
AATAATAATTATTCTGGTTA+TGG 0.263471 3_4:-66765669 Msa0515520:CDS
TCAAGACTTGCTGCATTTAG+AGG 0.270388 3_4:-66765051 Msa0515520:intron
CCTCTTTCTTGTTCTCGTTC+AGG 0.274414 3_4:+66766083 None:intergenic
GGGATCTAAAAGAGGTTGTT+AGG 0.275615 3_4:-66765158 Msa0515520:CDS
CTCCCTTTCAAGTTCTATAA+TGG 0.279518 3_4:+66762956 None:intergenic
ACTATGAAACCGCACCGTTT+TGG 0.283793 3_4:+66765380 None:intergenic
TCCGTCTCATCTTCTAATTC+AGG 0.285195 3_4:+66765567 None:intergenic
GTGGAATAATAATACTAAAA+TGG 0.291431 3_4:+66766639 None:intergenic
GGTTATGGAAGTTATGGATT+AGG 0.292348 3_4:-66765654 Msa0515520:CDS
AAAAGTGTTGAAACTATATC+AGG 0.292364 3_4:-66763797 Msa0515520:CDS
GGAGCCGGAGCCGGCGGAGG+CGG 0.296226 3_4:+66765750 None:intergenic
CCTAATGGCTTCCTTATGTT+TGG 0.304816 3_4:+66762437 None:intergenic
TATTCTGGTTATGGAAGTTA+TGG 0.304828 3_4:-66765660 Msa0515520:CDS
GGAGTATATAGTTAGGAAAT+TGG 0.312716 3_4:+66766999 None:intergenic
TTTCTAGGAGGAGATCCTTT+AGG 0.318934 3_4:+66765297 None:intergenic
AGGAACAAAGGCGGAAAATC+AGG 0.327990 3_4:-66762656 Msa0515520:CDS
CAATCTTGCTGATATGGATA+TGG 0.328887 3_4:+66765984 None:intergenic
GTTCTCCTTATGGTGGTTAT+GGG 0.330786 3_4:-66765839 Msa0515520:CDS
TTTGCATTTGCATTTGCATT+TGG 0.331122 3_4:+66767057 None:intergenic
CAATGGACTGGTTCTCCTTA+TGG 0.331408 3_4:-66765849 Msa0515520:CDS
ACACCATCATCTGTTTCTTC+AGG 0.331566 3_4:+66762834 None:intergenic
TAGAGCTTTGCGCACCGAAA+TGG 0.331955 3_4:-66762598 Msa0515520:CDS
CCTTTAGGAACAACATTATC+AGG 0.332468 3_4:+66765312 None:intergenic
TCAGGTTCGGATTCAGCTTC+GGG 0.343787 3_4:+66766101 None:intergenic
GAGAGACACGTGGCGGAATC+TGG 0.345695 3_4:-66765873 Msa0515520:CDS
TGCGCCGCCTCCGCCGGCTC+CGG 0.347174 3_4:-66765754 Msa0515520:CDS
AGCTTGCAGCATTAATTAAT+GGG 0.348005 3_4:-66763736 Msa0515520:CDS
TTCAGGTTCGGATTCAGCTT+CGG 0.349560 3_4:+66766100 None:intergenic
GTTGTTAAGGGTGGAGATTT+TGG 0.350423 3_4:-66765465 Msa0515520:CDS
GTTATGGAAGTTATGGATTA+GGG 0.351793 3_4:-66765653 Msa0515520:CDS
GAAGAAAGTGGCAGAGGAAG+TGG 0.352265 3_4:-66765505 Msa0515520:CDS
TGCTGATATGGATATGGATA+TGG 0.356187 3_4:+66765990 None:intergenic
AGTTTCAGCAACTAAAGCTT+TGG 0.356209 3_4:-66762177 Msa0515520:three_prime_UTR
AGAAAAGGAAGAGGTTGTTA+AGG 0.362522 3_4:-66765478 Msa0515520:CDS
CAAGAAAGAGGATTTGAATA+TGG 0.364165 3_4:-66766071 Msa0515520:CDS
GCAGTTGCAGTTTGATTTGA+AGG 0.368463 3_4:-66764812 Msa0515520:intron
GGAGCCGGCGGAGGCGGCGC+AGG 0.371955 3_4:+66765756 None:intergenic
CATATCCATATCAGCAAGAT+TGG 0.373515 3_4:-66765983 Msa0515520:CDS
TTCTTGTTCTCGTTCAGGTT+CGG 0.378525 3_4:+66766088 None:intergenic
TTCATTTATTTATTGATTGT+AGG 0.380009 3_4:-66762069 Msa0515520:three_prime_UTR
TACGCCTGCGCCGCCTCCGC+CGG 0.382792 3_4:-66765760 Msa0515520:CDS
TATGGTGGTTATGGGTATAA+TGG 0.383537 3_4:-66765831 Msa0515520:CDS
CACCACCGAGAGTTTCTACT+TGG 0.383628 3_4:-66765722 Msa0515520:CDS
TGAATAGAGATGGATCGATT+TGG 0.384964 3_4:+66766795 None:intergenic
CCGAACCATCTTCTTCTTAC+GGG 0.385216 3_4:-66766022 Msa0515520:CDS
CACGGGGAACTCCTCCAGTT+TGG 0.386880 3_4:+66766493 None:intergenic
TGAGATTTAGATTTAAGAAA+AGG 0.388460 3_4:+66766898 None:intergenic
GGAACTGTTTCTGGTGGCAT+TGG 0.392548 3_4:+66763051 None:intergenic
CGGATTCAGCTTCGGGTGTT+CGG 0.397164 3_4:+66766108 None:intergenic
GGAGGCGGCGCAGGCGTAGA+AGG 0.400533 3_4:+66765765 None:intergenic
CCCGTAAGAAGAAGATGGTT+CGG 0.403321 3_4:+66766022 None:intergenic
CCCGAACCATCTTCTTCTTA+CGG 0.406997 3_4:-66766023 Msa0515520:CDS
GGTGGAGCCGGAGCCGGCGG+AGG 0.407665 3_4:+66765747 None:intergenic
CTTTCATTATCTGCAATGAT+TGG 0.408806 3_4:-66762773 Msa0515520:CDS
GGCATAGAGATTGGTGATGT+TGG 0.409760 3_4:+66766954 None:intergenic
CGAGAAGGCAATGTGAGAAC+AGG 0.414014 3_4:+66766275 None:intergenic
TAATAGTTTACAAACTGGTT+TGG 0.416201 3_4:-66762394 Msa0515520:CDS
CCAATCCGACTTGGAGAGTA+AGG 0.417005 3_4:+66762807 None:intergenic
CTTTGTCTCCACATGGAACT+AGG 0.419464 3_4:-66765179 Msa0515520:CDS
ATGCCACCAGAAACAGTTCC+AGG 0.420200 3_4:-66763048 Msa0515520:CDS
GTTTCAGCAACTAAAGCTTT+GGG 0.420405 3_4:-66762176 Msa0515520:three_prime_UTR
TTGAAAGGGAGCTTCTGAAT+TGG 0.420884 3_4:-66762944 Msa0515520:CDS
TGTTGTTGGAGTATATAGTT+AGG 0.424558 3_4:+66766992 None:intergenic
AAGAAGTGAGGGAGAGAGAA+GGG 0.424841 3_4:-66765593 Msa0515520:CDS
GGTGAAGGTGGAGCCGGAGC+CGG 0.424911 3_4:+66765741 None:intergenic
GGAAGTTATGGATTAGGGCT+AGG 0.425449 3_4:-66765648 Msa0515520:CDS
AGATTCCGCCACGTGTCTCT+CGG 0.425616 3_4:+66765875 None:intergenic
ATGAATAGAATTTCAGAAAG+AGG 0.426192 3_4:-66762741 Msa0515520:CDS
TATGGGTATAATGGTATGAA+TGG 0.427326 3_4:-66765822 Msa0515520:CDS
GAAGAAGAAGAAAGTGGCAG+AGG 0.427934 3_4:-66765511 Msa0515520:CDS
GGTGCACACAGTTCAACAAT+TGG 0.428625 3_4:-66762923 Msa0515520:CDS
CTCTGAAGTGAAACTTTCTA+AGG 0.429224 3_4:+66762356 None:intergenic
TCTTATGTTGAAAATTTGAA+TGG 0.431188 3_4:-66762885 Msa0515520:CDS
AGAGCTTTGCGCACCGAAAT+GGG 0.431764 3_4:-66762597 Msa0515520:CDS
TTTGAGACTGCTTCTAATCA+TGG 0.432301 3_4:-66765120 Msa0515520:CDS
TCGGGTTGGTGTTCGTATTG+AGG 0.433025 3_4:+66766041 None:intergenic
GAAGGAAGTGCCATTGCAAC+AGG 0.435586 3_4:-66765424 Msa0515520:CDS
GATCTGTAAATTGTTGTTGT+TGG 0.437109 3_4:+66766978 None:intergenic
CTCAAAAGCTGCATGAGCTA+TGG 0.438860 3_4:-66762692 Msa0515520:CDS
AGCATAATGAAGGAAAGAAA+TGG 0.441070 3_4:+66766581 None:intergenic
TCGAAGTTCAATTCTGATAG+TGG 0.442059 3_4:-66762528 Msa0515520:CDS
AAGAGGTTGTGTTTGTTACT+GGG 0.442183 3_4:+66766708 None:intergenic
AAGAGGGGTGGCAGATGCTA+TGG 0.442230 3_4:-66762724 Msa0515520:CDS
TTTGCAGCTAGAGTTAATCT+TGG 0.445326 3_4:-66762250 Msa0515520:three_prime_UTR
TGTAAATTAACATGGGCTGC+GGG 0.449614 3_4:-66766520 Msa0515520:exon
GCATAGAGATTGGTGATGTT+GGG 0.455238 3_4:+66766955 None:intergenic
TTTGTGGTGTTGTTGAGAAA+TGG 0.457183 3_4:+66766557 None:intergenic
TTTGAATCTTTCTTCTGGAT+CGG 0.458184 3_4:-66766180 Msa0515520:CDS
GGATCTCCTCCTAGAAAGAA+AGG 0.460253 3_4:-66765291 Msa0515520:CDS
CTCGGTGGTGAAGGTGGAGC+CGG 0.465082 3_4:+66765735 None:intergenic
CCGTAAGAAGAAGATGGTTC+GGG 0.466321 3_4:+66766023 None:intergenic
CCTGATAATGTTGTTCCTAA+AGG 0.466850 3_4:-66765312 Msa0515520:CDS
ATTAGAAGATGAGACGGAAC+AGG 0.466915 3_4:-66765562 Msa0515520:CDS
ACTGGTTTGCAAAGAGATGA+AGG 0.467754 3_4:-66762987 Msa0515520:CDS
GAAAAGGAAGAGGTTGTTAA+GGG 0.470149 3_4:-66765477 Msa0515520:CDS
GCTTCTAATAGTTTACAAAC+TGG 0.474058 3_4:-66762399 Msa0515520:CDS
TGATAGTGGTGTTTCGCCAC+TGG 0.474624 3_4:-66762514 Msa0515520:CDS
GAAGTTATGGATTAGGGCTA+GGG 0.477151 3_4:-66765647 Msa0515520:CDS
AGGGAAAATGGCATAGAGAT+TGG 0.481322 3_4:+66766945 None:intergenic
TGATGAGAGGGCCAAACATA+AGG 0.481807 3_4:-66762448 Msa0515520:CDS
TAGAGTTAATCTTGGTATGT+AGG 0.481953 3_4:-66762242 Msa0515520:three_prime_UTR
AAAGAAGTGAGGGAGAGAGA+AGG 0.482867 3_4:-66765594 Msa0515520:CDS
AAGCCATTATAGAACTTGAA+AGG 0.483499 3_4:-66762959 Msa0515520:CDS
CGACAAATTGTAAATTAACA+TGG 0.483870 3_4:-66766528 Msa0515520:exon
GATGGATCGATTTGGAAGGA+GGG 0.483947 3_4:+66766803 None:intergenic
TGCATCACGGACAAGCCTAA+TGG 0.484621 3_4:+66762422 None:intergenic
GAGTGAAATCTGACCGTTGA+TGG 0.485438 3_4:+66766771 None:intergenic
TTTCTTCAGGTTCATCAAGA+AGG 0.487287 3_4:+66762847 None:intergenic
AACTCTAGCTGCAAAATTGG+TGG 0.487478 3_4:+66762258 None:intergenic
AGATGGATCGATTTGGAAGG+AGG 0.497712 3_4:+66766802 None:intergenic
CAGTTCAGTGAGGGTAATAG+TGG 0.499151 3_4:+66766620 None:intergenic
TACTAAAATGGAAGCAGCAT+GGG 0.501036 3_4:+66766651 None:intergenic
TGAATAGAATTTCAGAAAGA+GGG 0.501325 3_4:-66762740 Msa0515520:CDS
AAGGAAGAGGTTGTTAAGGG+TGG 0.503136 3_4:-66765474 Msa0515520:CDS
GGTATGAATGGAGGTAATAG+TGG 0.503648 3_4:-66765810 Msa0515520:CDS
ATTTGAATGGGTGGCTCAGA+AGG 0.504891 3_4:-66762872 Msa0515520:CDS
TCAAAAGCTGCATGAGCTAT+GGG 0.507138 3_4:-66762691 Msa0515520:CDS
AGAGGAAGTGGAGAAAGAAA+AGG 0.507961 3_4:-66765493 Msa0515520:CDS
TGCGGAGCTCCAATCCGACT+TGG 0.511426 3_4:+66762798 None:intergenic
GCTTTGGGTGTGTAAACGTC+AGG 0.511721 3_4:-66762161 Msa0515520:three_prime_UTR
GGAAAGAAATGGAAGAAAGA+TGG 0.512909 3_4:+66766592 None:intergenic
AGTGGAGAAAGAAAAGGAAG+AGG 0.513148 3_4:-66765487 Msa0515520:CDS
CCTTACTCTCCAAGTCGGAT+TGG 0.513152 3_4:-66762807 Msa0515520:CDS
GATCTCCTCCTAGAAAGAAA+GGG 0.513989 3_4:-66765290 Msa0515520:CDS
GTGCACACAGTTCAACAATT+GGG 0.515126 3_4:-66762922 Msa0515520:CDS
GAAACAGTTCCAGGCTATCA+TGG 0.515239 3_4:-66763039 Msa0515520:CDS
AGCCATTATAGAACTTGAAA+GGG 0.515704 3_4:-66762958 Msa0515520:CDS
CTTAGAAAGTTTCACTTCAG+AGG 0.516214 3_4:-66762355 Msa0515520:CDS
CCAAACATAAGGAAGCCATT+AGG 0.516949 3_4:-66762437 Msa0515520:CDS
GTGAAAATTAGTGAAGGAAA+AGG 0.518538 3_4:+66766744 None:intergenic
GATTCCGCCACGTGTCTCTC+GGG 0.519830 3_4:+66765876 None:intergenic
CACAGTTCAACAATTGGGTC+AGG 0.519909 3_4:-66762917 Msa0515520:CDS
GGATCTAAAAGAGGTTGTTA+GGG 0.519957 3_4:-66765157 Msa0515520:CDS
CTACTACTCACCTGTTGCAA+TGG 0.521870 3_4:+66765414 None:intergenic
CTCACATTGCCTTCTCGTGA+AGG 0.524220 3_4:-66766269 Msa0515520:CDS
GAAGGTGGAGCCGGAGCCGG+CGG 0.524547 3_4:+66765744 None:intergenic
CTTATGTTGAAAATTTGAAT+GGG 0.525221 3_4:-66762884 Msa0515520:CDS
ATGCAAGAGATTGAAAGCAT+TGG 0.527869 3_4:-66763903 Msa0515520:CDS
TTGTAAATTAACATGGGCTG+CGG 0.536115 3_4:-66766521 Msa0515520:exon
GTTACAACAGTAGAGGTTGA+TGG 0.539166 3_4:-66765231 Msa0515520:CDS
TTCGCCACTGGATGATCTAA+AGG 0.539779 3_4:-66762502 Msa0515520:CDS
GTAGAAACTCTCGGTGGTGA+AGG 0.541943 3_4:+66765726 None:intergenic
GAGAAATGGAAGCATAATGA+AGG 0.542341 3_4:+66766571 None:intergenic
ATGGATCGATTTGGAAGGAG+GGG 0.545567 3_4:+66766804 None:intergenic
CTCACCCCTTTCTTTCTAGG+AGG 0.547699 3_4:+66765285 None:intergenic
CTGCAGCCTCGTAGAGAACA+TGG 0.549697 3_4:-66762296 Msa0515520:exon
GCAGCAAGTCTTGACTGATA+AGG 0.550165 3_4:+66765060 None:intergenic
TGTACTCTGAACTCAATCCT+TGG 0.551084 3_4:-66766855 Msa0515520:five_prime_UTR
CCTCTTAAAACTCTCTGAAG+AGG 0.552545 3_4:-66762213 Msa0515520:three_prime_UTR
GGCGAGAGCGTATCGTTGAT+CGG 0.553267 3_4:+66766427 None:intergenic
GAGGATTTACCTTCACGAGA+AGG 0.553408 3_4:+66766260 None:intergenic
TTTGTCTCCACATGGAACTA+GGG 0.554562 3_4:-66765178 Msa0515520:CDS
GGCTAGGGTTAGCGTCGAGT+GGG 0.555964 3_4:-66765632 Msa0515520:CDS
ACGAGCATGACAAAGTTTCA+GGG 0.557309 3_4:-66762563 Msa0515520:CDS
TCCTGAATTAGAAGATGAGA+CGG 0.558744 3_4:-66765568 Msa0515520:CDS
GGTTGTGTTTGTTACTGGGA+GGG 0.559165 3_4:+66766712 None:intergenic
CCTGAACGAGAACAAGAAAG+AGG 0.563358 3_4:-66766083 Msa0515520:CDS
CAATCTCTCAAATTAAACAC+TGG 0.563399 3_4:-66763005 Msa0515520:CDS
TTAATTAATGCTGCAAGCTG+AGG 0.567648 3_4:+66763740 None:intergenic
GAAGAAATTGCATGATGAGA+GGG 0.568060 3_4:-66762460 Msa0515520:CDS
TCCTGATTCAAAAGAAGTGA+GGG 0.568796 3_4:-66765604 Msa0515520:CDS
GAAACTCTCGGTGGTGAAGG+TGG 0.570393 3_4:+66765729 None:intergenic
CAACAGGTGAGTAGTAGTGA+GGG 0.571312 3_4:-66765408 Msa0515520:CDS
GAAGAAGGAGTAGAACCAGT+TGG 0.571423 3_4:+66766323 None:intergenic
TTATACCCATAACCACCATA+AGG 0.575087 3_4:+66765834 None:intergenic
GGTGTGTAAACGTCAGGACA+TGG 0.578226 3_4:-66762155 Msa0515520:three_prime_UTR
AGAGGGGTGGCAGATGCTAT+GGG 0.579128 3_4:-66762723 Msa0515520:CDS
GCGGAATCTGGACAATGGAC+TGG 0.581256 3_4:-66765861 Msa0515520:CDS
TGTTAATTTACAATTTGTCG+TGG 0.581922 3_4:+66766531 None:intergenic
CGTTGATGGGTGAATAGAGA+TGG 0.582930 3_4:+66766785 None:intergenic
TTATACCCGTAAGAAGAAGA+TGG 0.583571 3_4:+66766017 None:intergenic
TAAATTAACATGGGCTGCGG+GGG 0.584717 3_4:-66766518 Msa0515520:exon
TAGAGATGGATCGATTTGGA+AGG 0.585555 3_4:+66766799 None:intergenic
ACTCAAGATCATGATCATCA+TGG 0.585920 3_4:+66766219 None:intergenic
GTAACACCCAATCTACAGTC+AGG 0.590215 3_4:-66762112 Msa0515520:three_prime_UTR
AGAGGTTGCATTTCTTCTCG+AGG 0.590287 3_4:-66765094 Msa0515520:CDS
TGGAACTAGGGATCTAAAAG+AGG 0.591949 3_4:-66765166 Msa0515520:CDS
GGGTATAATGGTATGAATGG+AGG 0.592051 3_4:-66765819 Msa0515520:CDS
GACAAATTGTAAATTAACAT+GGG 0.594367 3_4:-66766527 Msa0515520:exon
GTCCTGATTCAAAAGAAGTG+AGG 0.595426 3_4:-66765605 Msa0515520:CDS
TGCTTCTAATCATGGAAGAG+AGG 0.596147 3_4:-66765112 Msa0515520:CDS
GAGTTCAGAGTACAGAGTGT+GGG 0.596736 3_4:+66766864 None:intergenic
GTAAATTAACATGGGCTGCG+GGG 0.598567 3_4:-66766519 Msa0515520:exon
TGAAGGTACTTCGAATTCGA+AGG 0.599893 3_4:-66765442 Msa0515520:CDS
TTTCATAGTAGCGAAGGTAG+TGG 0.601039 3_4:-66765366 Msa0515520:CDS
GCAAGTCTTGACTGATAAGG+TGG 0.601503 3_4:+66765063 None:intergenic
AGAAAGTTTCACTTCAGAGG+TGG 0.603559 3_4:-66762352 Msa0515520:CDS
GGAACAAAGGCGGAAAATCA+GGG 0.603888 3_4:-66762655 Msa0515520:CDS
ATGTTGAAAATTTGAATGGG+TGG 0.604696 3_4:-66762881 Msa0515520:CDS
AAAGTGTTGAAACTATATCA+GGG 0.605560 3_4:-66763796 Msa0515520:CDS
GTATATAGTTAGGAAATTGG+TGG 0.607953 3_4:+66767002 None:intergenic
TTGCCCCTTACTCTCCAAGT+CGG 0.608240 3_4:-66762812 Msa0515520:CDS
TAAGCATAACTATTAACCCC+TGG 0.609549 3_4:+66765948 None:intergenic
TTCTCTGCAGAGAGTTACCA+CGG 0.610484 3_4:+66766475 None:intergenic
TTACAGTCTCTCAGAGACAT+CGG 0.611826 3_4:-66766386 Msa0515520:CDS
TCAGCAGATTGATAAGAATG+TGG 0.613642 3_4:-66763085 Msa0515520:intron
GTGCGGTTTCATAGTAGCGA+AGG 0.615348 3_4:-66765372 Msa0515520:CDS
GATTGGAATCAAAATCAACC+AGG 0.615626 3_4:-66765966 Msa0515520:CDS
AAATCCCAAGTAGAAACTCT+CGG 0.615723 3_4:+66765717 None:intergenic
AGGGAGGATACATAAACTGA+GGG 0.617129 3_4:-66763777 Msa0515520:CDS
AGAGGTGGTGAAAGCTCATG+AGG 0.617745 3_4:-66762337 Msa0515520:CDS
AGGTTGTGTTTGTTACTGGG+AGG 0.618221 3_4:+66766711 None:intergenic
GCCACTGGATGATCTAAAGG+TGG 0.618305 3_4:-66762499 Msa0515520:CDS
AGAAGAAATTGCATGATGAG+AGG 0.619702 3_4:-66762461 Msa0515520:CDS
ATACTAAAATGGAAGCAGCA+TGG 0.620596 3_4:+66766650 None:intergenic
AATCCGACTTGGAGAGTAAG+GGG 0.620758 3_4:+66762809 None:intergenic
CAATCCGACTTGGAGAGTAA+GGG 0.621439 3_4:+66762808 None:intergenic
TGAGGGTGATGAAGATGCGA+CGG 0.622626 3_4:-66765253 Msa0515520:CDS
TAGTGAGGGAAGTTCCAAAA+CGG 0.622761 3_4:-66765394 Msa0515520:CDS
TGAGTTCAGAGTACAGAGTG+TGG 0.624019 3_4:+66766863 None:intergenic
GGGCTAGGGTTAGCGTCGAG+TGG 0.624415 3_4:-66765633 Msa0515520:CDS
AACTATTAGAAGCTGCATCA+CGG 0.624613 3_4:+66762409 None:intergenic
GAGAAGGCAATGTGAGAACA+GGG 0.624709 3_4:+66766276 None:intergenic
TTTAGATCCCTAGTTCCATG+TGG 0.631482 3_4:+66765171 None:intergenic
TGGACTGGTTCTCCTTATGG+TGG 0.633553 3_4:-66765846 Msa0515520:CDS
CATCTCTATTCACCCATCAA+CGG 0.634085 3_4:-66766784 Msa0515520:five_prime_UTR
ATCTCCTCCTAGAAAGAAAG+GGG 0.635205 3_4:-66765289 Msa0515520:CDS
ACCACCGAGAGTTTCTACTT+GGG 0.635604 3_4:-66765721 Msa0515520:CDS
GCAACAGGTGAGTAGTAGTG+AGG 0.636074 3_4:-66765409 Msa0515520:CDS
AACAAGATGAGGAACAAAGG+CGG 0.639484 3_4:-66762665 Msa0515520:CDS
TGATGAACATGATCTGAAGA+AGG 0.639709 3_4:+66766146 None:intergenic
AGTGAAATCTGACCGTTGAT+GGG 0.640019 3_4:+66766772 None:intergenic
GACGGAACAGGAAACTGTGA+AGG 0.640183 3_4:-66765550 Msa0515520:CDS
GAATAGAATTTCAGAAAGAG+GGG 0.641585 3_4:-66762739 Msa0515520:CDS
TTGAAAGCATTGGATAATCG+AGG 0.645643 3_4:-66763893 Msa0515520:CDS
CAGGGAGGATACATAAACTG+AGG 0.649011 3_4:-66763778 Msa0515520:CDS
AATTATAACAGAAAGAGCCA+AGG 0.649146 3_4:+66766838 None:intergenic
ATGGCTGTTCAGTTCAGTGA+GGG 0.649245 3_4:+66766611 None:intergenic
ACGTGGCGGAATCTGGACAA+TGG 0.649398 3_4:-66765866 Msa0515520:CDS
AAGAAGAAGATGGTTCGGGT+TGG 0.651087 3_4:+66766027 None:intergenic
CATAGAGATTGGTGATGTTG+GGG 0.651776 3_4:+66766956 None:intergenic
GAACCTGAAGAAACAGATGA+TGG 0.653790 3_4:-66762837 Msa0515520:CDS
TCTCTGCAGAGAGTTACCAC+GGG 0.655952 3_4:+66766476 None:intergenic
AGAAACAAGATGAGGAACAA+AGG 0.658720 3_4:-66762668 Msa0515520:CDS
AAACGCGTGAAAATTAGTGA+AGG 0.665024 3_4:+66766738 None:intergenic
ATTGGAATCAAAATCAACCA+GGG 0.671756 3_4:-66765965 Msa0515520:CDS
TAGAATTTCAGAAAGAGGGG+TGG 0.673438 3_4:-66762736 Msa0515520:CDS
GGAAGCAGCATGGGAAAATG+TGG 0.675096 3_4:+66766660 None:intergenic
GGAACAGGAAACTGTGAAGG+AGG 0.675573 3_4:-66765547 Msa0515520:CDS
TTGCAGATAATGAAAGCTTG+CGG 0.678429 3_4:+66762780 None:intergenic
GAGACATCGGAGAAGCTCTG+AGG 0.681296 3_4:-66766373 Msa0515520:CDS
TTAAGCACTTTGTCTCCACA+TGG 0.682460 3_4:-66765186 Msa0515520:CDS
TAGCCTGGAACTGTTTCTGG+TGG 0.687495 3_4:+66763045 None:intergenic
TGCGACGGTTACAACAGTAG+AGG 0.688026 3_4:-66765238 Msa0515520:CDS
ACTGTTCTCAGGATGAAGAG+AGG 0.689314 3_4:-66763949 Msa0515520:intron
ATGAAGAAATCTGCACCACG+TGG 0.690953 3_4:-66765921 Msa0515520:CDS
CAGGGCAGAGTATCTCACAA+AGG 0.692112 3_4:-66762637 Msa0515520:CDS
CAAGATCATGATCATCATGG+TGG 0.695629 3_4:+66766222 None:intergenic
TTGGAATCAAAATCAACCAG+GGG 0.695794 3_4:-66765964 Msa0515520:CDS
GCTATGGGAGAAACAAGATG+AGG 0.701488 3_4:-66762676 Msa0515520:CDS
GCAGGCGTAGAAGGTCCCGC+CGG 0.701500 3_4:+66765774 None:intergenic
AGGGAAGTTCCAAAACGGTG+CGG 0.705993 3_4:-66765389 Msa0515520:CDS
TCAAGAACCCGAGAGACACG+TGG 0.707419 3_4:-66765883 Msa0515520:CDS
TCCACCTTTAGATCATCCAG+TGG 0.717641 3_4:+66762498 None:intergenic
GATGGCTGTTCAGTTCAGTG+AGG 0.724026 3_4:+66766610 None:intergenic
AGAAGGCAATGTGAGAACAG+GGG 0.739205 3_4:+66766277 None:intergenic
TAAATAAGAAAGATGCGCGG+CGG 0.741921 3_4:+66766406 None:intergenic
CTCTGCAGAGAGTTACCACG+GGG 0.744877 3_4:+66766477 None:intergenic
AATCGTCCATGTTCTCTACG+AGG 0.757312 3_4:+66762290 None:intergenic
CTGTAAATAAGAAAGATGCG+CGG 0.772683 3_4:+66766403 None:intergenic
GTGTTGAAACTATATCAGGG+AGG 0.772755 3_4:-66763793 Msa0515520:CDS
CAAACTGGAGGAGTTCCCCG+TGG 0.774000 3_4:-66766492 Msa0515520:CDS
AGAACCCGAGAGACACGTGG+CGG 0.780648 3_4:-66765880 Msa0515520:CDS
TCCCAAGTAGAAACTCTCGG+TGG 0.798985 3_4:+66765720 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAGATTAAAAAAAGA+GGG + chr3_4:66762193-66762212 None:intergenic 10.0%
!! AATAATAAGATTAAAAAAAG+AGG + chr3_4:66762194-66762213 None:intergenic 10.0%
!! ATAAATTAGTAAATATTGTA+CGG - chr3_4:66765106-66765125 Msa0515520:CDS 10.0%
!! TATTAATAATGAAGATTTAA+GGG + chr3_4:66765850-66765869 None:intergenic 10.0%
!! TTATTAATAATGAAGATTTA+AGG + chr3_4:66765851-66765870 None:intergenic 10.0%
!!! TTAATAATTATCATCATTTT+TGG - chr3_4:66765864-66765883 Msa0515520:CDS 10.0%
!!! AATAATAATTATTCTGGTTA+TGG - chr3_4:66763447-66763466 Msa0515520:intron 15.0%
!!! TTTGAAATTAGTTAAATGTT+AGG - chr3_4:66764817-66764836 Msa0515520:CDS 15.0%
!! TGACATGATATTAAAAAAAA+TGG + chr3_4:66765479-66765498 None:intergenic 15.0%
!!! TTCATTTATTTATTGATTGT+AGG - chr3_4:66767047-66767066 Msa0515520:five_prime_UTR 15.0%
!! TGAGATTTAGATTTAAGAAA+AGG + chr3_4:66762221-66762240 None:intergenic 20.0%
!! GTGGAATAATAATACTAAAA+TGG + chr3_4:66762480-66762499 None:intergenic 20.0%
!! GACAAATTGTAAATTAACAT+GGG - chr3_4:66762589-66762608 Msa0515520:CDS 20.0%
!! GTTGACAATAATAATTATTC+TGG - chr3_4:66763441-66763460 Msa0515520:intron 20.0%
!!! TTTCCTTTTTAGTTCTTTTT+TGG - chr3_4:66764099-66764118 Msa0515520:intron 20.0%
!! AATCCAAAAAAGAACTAAAA+AGG + chr3_4:66764105-66764124 None:intergenic 20.0%
!!! TTTTAGTTCTTTTTTGGATT+TGG - chr3_4:66764105-66764124 Msa0515520:intron 20.0%
!! ATATATGTTGAACTTTATGT+GGG - chr3_4:66764363-66764382 Msa0515520:intron 20.0%
!! ATGTAAATATTACTGTTTAC+AGG - chr3_4:66764464-66764483 Msa0515520:intron 20.0%
!!! AAATTAGTTACTTTATGCAT+GGG - chr3_4:66764752-66764771 Msa0515520:intron 20.0%
!! AACAACATAAATGTATGAAA+GGG + chr3_4:66764975-66764994 None:intergenic 20.0%
!! AAACAACATAAATGTATGAA+AGG + chr3_4:66764976-66764995 None:intergenic 20.0%
!! ACAAATAAGAACAATTTGAA+AGG + chr3_4:66765134-66765153 None:intergenic 20.0%
!!! ATTATCATCATTTTTGGTTT+TGG - chr3_4:66765870-66765889 Msa0515520:CDS 20.0%
!!! TTATCATCATTTTTGGTTTT+GGG - chr3_4:66765871-66765890 Msa0515520:CDS 20.0%
!! TCTTATGTTGAAAATTTGAA+TGG - chr3_4:66766231-66766250 Msa0515520:CDS 20.0%
!! CTTATGTTGAAAATTTGAAT+GGG - chr3_4:66766232-66766251 Msa0515520:CDS 20.0%
! GATTAAAAAAAGAGGGAAAA+TGG + chr3_4:66762186-66762205 None:intergenic 25.0%
! TGTTAATTTACAATTTGTCG+TGG + chr3_4:66762588-66762607 None:intergenic 25.0%
! CGACAAATTGTAAATTAACA+TGG - chr3_4:66762588-66762607 Msa0515520:CDS 25.0%
! AACATTAAGCAATAGGATAA+GGG - chr3_4:66764212-66764231 Msa0515520:intron 25.0%
! CATATATGTTGAACTTTATG+TGG - chr3_4:66764362-66764381 Msa0515520:intron 25.0%
! CTCTATACTATCATTTAATC+AGG - chr3_4:66764417-66764436 Msa0515520:intron 25.0%
! TTAGAAGAAAATTGTATTGG+CGG + chr3_4:66764585-66764604 None:intergenic 25.0%
! GTCTTAGAAGAAAATTGTAT+TGG + chr3_4:66764588-66764607 None:intergenic 25.0%
!!! TTCTTCTAAGACAATGAAAT+TGG - chr3_4:66764596-66764615 Msa0515520:intron 25.0%
! TTTGATATTAACTCTTTCTC+AGG + chr3_4:66764642-66764661 None:intergenic 25.0%
! AATGTAGATGAAAGGTTTAT+CGG + chr3_4:66764666-66764685 None:intergenic 25.0%
! ATGGGAAAAGAAATTATACA+AGG - chr3_4:66764701-66764720 Msa0515520:intron 25.0%
! GAAATTATACAAGGAAGTTA+AGG - chr3_4:66764710-66764729 Msa0515520:intron 25.0%
!! GAAATTAGTTACTTTATGCA+TGG - chr3_4:66764751-66764770 Msa0515520:intron 25.0%
! ATGGGAAAAGAAATTATACA+AGG - chr3_4:66764701-66764720 Msa0515520:intron 25.0%
! GAAATTATACAAGGAAGTTA+AGG - chr3_4:66764710-66764729 Msa0515520:intron 25.0%
! TTCATGAAATTAGAAAACGT+TGG - chr3_4:66764858-66764877 Msa0515520:intron 25.0%
! GTTTGAGAGATGATATAAAT+TGG - chr3_4:66764992-66765011 Msa0515520:intron 25.0%
!!! AAAAGTGTTGAAACTATATC+AGG - chr3_4:66765319-66765338 Msa0515520:CDS 25.0%
!!! AAAGTGTTGAAACTATATCA+GGG - chr3_4:66765320-66765339 Msa0515520:CDS 25.0%
! TTAATGAAACAGTTCAACTT+TGG + chr3_4:66765591-66765610 None:intergenic 25.0%
! CAAAATCAAACATTCCATTA+GGG + chr3_4:66765647-66765666 None:intergenic 25.0%
!!! AATTTGTTGTTTTTCCTACA+CGG - chr3_4:66765901-66765920 Msa0515520:CDS 25.0%
! ATGAATAGAATTTCAGAAAG+AGG - chr3_4:66766375-66766394 Msa0515520:CDS 25.0%
! TGAATAGAATTTCAGAAAGA+GGG - chr3_4:66766376-66766395 Msa0515520:CDS 25.0%
! TAATAGTTTACAAACTGGTT+TGG - chr3_4:66766722-66766741 Msa0515520:five_prime_UTR 25.0%
!!! CTTTCTAAGGTCTTAAAAAT+GGG + chr3_4:66766750-66766769 None:intergenic 25.0%
!!! ACTTTCTAAGGTCTTAAAAA+TGG + chr3_4:66766751-66766770 None:intergenic 25.0%
TTTGCATTTGCATTTGCATT+TGG + chr3_4:66762062-66762081 None:intergenic 30.0%
GTATATAGTTAGGAAATTGG+TGG + chr3_4:66762117-66762136 None:intergenic 30.0%
GGAGTATATAGTTAGGAAAT+TGG + chr3_4:66762120-66762139 None:intergenic 30.0%
TGTTGTTGGAGTATATAGTT+AGG + chr3_4:66762127-66762146 None:intergenic 30.0%
! GATCTGTAAATTGTTGTTGT+TGG + chr3_4:66762141-66762160 None:intergenic 30.0%
AATTATAACAGAAAGAGCCA+AGG + chr3_4:66762281-66762300 None:intergenic 30.0%
GTGAAAATTAGTGAAGGAAA+AGG + chr3_4:66762375-66762394 None:intergenic 30.0%
AGCATAATGAAGGAAAGAAA+TGG + chr3_4:66762538-66762557 None:intergenic 30.0%
TGGAAGAAAAAGATCTTGAT+CGG + chr3_4:66762776-66762795 None:intergenic 30.0%
!!! GTGGTTACTACTATTTTTAG+AGG + chr3_4:66762878-66762897 None:intergenic 30.0%
TCTCATTTGAATCTTTCTTC+TGG - chr3_4:66762931-66762950 Msa0515520:CDS 30.0%
TTTGAATCTTTCTTCTGGAT+CGG - chr3_4:66762936-66762955 Msa0515520:CDS 30.0%
CAAGAAAGAGGATTTGAATA+TGG - chr3_4:66763045-66763064 Msa0515520:CDS 30.0%
ATTGGAATCAAAATCAACCA+GGG - chr3_4:66763151-66763170 Msa0515520:intron 30.0%
TATGGGTATAATGGTATGAA+TGG - chr3_4:66763294-66763313 Msa0515520:intron 30.0%
!!! TAGTGGTTTTTTTGGTTTTC+CGG - chr3_4:66763323-66763342 Msa0515520:intron 30.0%
! TATTCTGGTTATGGAAGTTA+TGG - chr3_4:66763456-66763475 Msa0515520:intron 30.0%
! GTTATGGAAGTTATGGATTA+GGG - chr3_4:66763463-66763482 Msa0515520:intron 30.0%
AGATTGTGCTAGAATAATCA+TGG - chr3_4:66764145-66764164 Msa0515520:intron 30.0%
GATTGTGCTAGAATAATCAT+GGG - chr3_4:66764146-66764165 Msa0515520:intron 30.0%
ATGACTGATGTATGTTATGT+AGG - chr3_4:66764171-66764190 Msa0515520:intron 30.0%
TGCTTACAACATTAAGCAAT+AGG - chr3_4:66764205-66764224 Msa0515520:intron 30.0%
CAACATTAAGCAATAGGATA+AGG - chr3_4:66764211-66764230 Msa0515520:intron 30.0%
ACATTAAGCAATAGGATAAG+GGG - chr3_4:66764213-66764232 Msa0515520:intron 30.0%
! TTTTCTTGAAGCACAAAACT+GGG + chr3_4:66764283-66764302 None:intergenic 30.0%
! ATTTTCTTGAAGCACAAAAC+TGG + chr3_4:66764284-66764303 None:intergenic 30.0%
GATAAACCTTTCATCTACAT+TGG - chr3_4:66764665-66764684 Msa0515520:intron 30.0%
ATTGGAGAAACTTTATGCAT+GGG - chr3_4:66764683-66764702 Msa0515520:intron 30.0%
! TTACTGTGTATCCTTCTTTT+AGG - chr3_4:66764914-66764933 Msa0515520:intron 30.0%
! TACTGTGTATCCTTCTTTTA+GGG - chr3_4:66764915-66764934 Msa0515520:intron 30.0%
ATGAAAGGGAAACTATGTAT+AGG + chr3_4:66764961-66764980 None:intergenic 30.0%
! AAAAACAATGCTGATTATGC+AGG + chr3_4:66765062-66765081 None:intergenic 30.0%
TTGTATTTAACACTGTTCTC+AGG - chr3_4:66765156-66765175 Msa0515520:CDS 30.0%
!! AGCATCAATTTTAGTAGCTT+CGG + chr3_4:66765251-66765270 None:intergenic 30.0%
AGCTTGCAGCATTAATTAAT+GGG - chr3_4:66765380-66765399 Msa0515520:CDS 30.0%
AGTAGAAATTTCTCAGCTAA+GGG - chr3_4:66765453-66765472 Msa0515520:CDS 30.0%
!! ACTGTCAACTAAAGCATTTT+TGG + chr3_4:66765559-66765578 None:intergenic 30.0%
TATGAATCAGAAATCCCTAA+TGG - chr3_4:66765630-66765649 Msa0515520:CDS 30.0%
GCAAAATCAAACATTCCATT+AGG + chr3_4:66765648-66765667 None:intergenic 30.0%
TATCATCAATAGTGACAACA+AGG + chr3_4:66765681-66765700 None:intergenic 30.0%
! GTCACTATTGATGATAATGT+AGG - chr3_4:66765685-66765704 Msa0515520:CDS 30.0%
CAATCTCTCAAATTAAACAC+TGG - chr3_4:66766111-66766130 Msa0515520:CDS 30.0%
AAGCCATTATAGAACTTGAA+AGG - chr3_4:66766157-66766176 Msa0515520:CDS 30.0%
AGCCATTATAGAACTTGAAA+GGG - chr3_4:66766158-66766177 Msa0515520:CDS 30.0%
ATGTTGAAAATTTGAATGGG+TGG - chr3_4:66766235-66766254 Msa0515520:CDS 30.0%
CTTTCATTATCTGCAATGAT+TGG - chr3_4:66766343-66766362 Msa0515520:CDS 30.0%
GAATAGAATTTCAGAAAGAG+GGG - chr3_4:66766377-66766396 Msa0515520:CDS 30.0%
GCTTCTAATAGTTTACAAAC+TGG - chr3_4:66766717-66766736 Msa0515520:five_prime_UTR 30.0%
ATTAACTCTAGCTGCAAAAT+TGG + chr3_4:66766864-66766883 None:intergenic 30.0%
TAGAGTTAATCTTGGTATGT+AGG - chr3_4:66766874-66766893 Msa0515520:five_prime_UTR 30.0%
TGAATAGAGATGGATCGATT+TGG + chr3_4:66762324-66762343 None:intergenic 35.0%
AAACGCGTGAAAATTAGTGA+AGG + chr3_4:66762381-66762400 None:intergenic 35.0%
! AAGAGGTTGTGTTTGTTACT+GGG + chr3_4:66762411-66762430 None:intergenic 35.0%
TACTAAAATGGAAGCAGCAT+GGG + chr3_4:66762468-66762487 None:intergenic 35.0%
ATACTAAAATGGAAGCAGCA+TGG + chr3_4:66762469-66762488 None:intergenic 35.0%
GGAAAGAAATGGAAGAAAGA+TGG + chr3_4:66762527-66762546 None:intergenic 35.0%
! GAGAAATGGAAGCATAATGA+AGG + chr3_4:66762548-66762567 None:intergenic 35.0%
!! TTTGTGGTGTTGTTGAGAAA+TGG + chr3_4:66762562-66762581 None:intergenic 35.0%
!!! CAATTTGTCGTGGTTTTTTG+TGG + chr3_4:66762578-66762597 None:intergenic 35.0%
! TTGTAAATTAACATGGGCTG+CGG - chr3_4:66762595-66762614 Msa0515520:CDS 35.0%
CTGTAAATAAGAAAGATGCG+CGG + chr3_4:66762716-66762735 None:intergenic 35.0%
! CAAGATCTTTTTCTTCCAAC+TGG - chr3_4:66762778-66762797 Msa0515520:CDS 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG + chr3_4:66762811-66762830 None:intergenic 35.0%
ACTCAAGATCATGATCATCA+TGG + chr3_4:66762900-66762919 None:intergenic 35.0%
TGATGAACATGATCTGAAGA+AGG + chr3_4:66762973-66762992 None:intergenic 35.0%
TTATACCCGTAAGAAGAAGA+TGG + chr3_4:66763102-66763121 None:intergenic 35.0%
TGCTGATATGGATATGGATA+TGG + chr3_4:66763129-66763148 None:intergenic 35.0%
CAATCTTGCTGATATGGATA+TGG + chr3_4:66763135-66763154 None:intergenic 35.0%
CATATCCATATCAGCAAGAT+TGG - chr3_4:66763133-66763152 Msa0515520:intron 35.0%
TGATTCCAATCTTGCTGATA+TGG + chr3_4:66763141-66763160 None:intergenic 35.0%
GATTGGAATCAAAATCAACC+AGG - chr3_4:66763150-66763169 Msa0515520:intron 35.0%
TTGGAATCAAAATCAACCAG+GGG - chr3_4:66763152-66763171 Msa0515520:intron 35.0%
TAAGCATAACTATTAACCCC+TGG + chr3_4:66763171-66763190 None:intergenic 35.0%
TTATACCCATAACCACCATA+AGG + chr3_4:66763285-66763304 None:intergenic 35.0%
TATGGTGGTTATGGGTATAA+TGG - chr3_4:66763285-66763304 Msa0515520:intron 35.0%
!!! GGAGGTAATAGTGGTTTTTT+TGG - chr3_4:66763315-66763334 Msa0515520:intron 35.0%
AAATCCCAAGTAGAAACTCT+CGG + chr3_4:66763402-66763421 None:intergenic 35.0%
GGTTATGGAAGTTATGGATT+AGG - chr3_4:66763462-66763481 Msa0515520:intron 35.0%
TCCTGATTCAAAAGAAGTGA+GGG - chr3_4:66763512-66763531 Msa0515520:intron 35.0%
TCCTGAATTAGAAGATGAGA+CGG - chr3_4:66763548-66763567 Msa0515520:intron 35.0%
TGAGAAGAAGAAGAAGAAAG+TGG - chr3_4:66763599-66763618 Msa0515520:intron 35.0%
AGAAAAGGAAGAGGTTGTTA+AGG - chr3_4:66763638-66763657 Msa0515520:intron 35.0%
GAAAAGGAAGAGGTTGTTAA+GGG - chr3_4:66763639-66763658 Msa0515520:intron 35.0%
! CCTTTAGGAACAACATTATC+AGG + chr3_4:66763807-66763826 None:intergenic 35.0%
! CCTGATAATGTTGTTCCTAA+AGG - chr3_4:66763804-66763823 Msa0515520:CDS 35.0%
GGATCTAAAAGAGGTTGTTA+GGG - chr3_4:66763959-66763978 Msa0515520:intron 35.0%
! TTTGAGACTGCTTCTAATCA+TGG - chr3_4:66763996-66764015 Msa0515520:intron 35.0%
!! TTTTGGATTTGGTTTCGTAG+TGG - chr3_4:66764116-66764135 Msa0515520:intron 35.0%
GATGTATGTTATGTAGGAGA+AGG - chr3_4:66764177-66764196 Msa0515520:intron 35.0%
! AAATTGGCAAAAGCATACTG+TGG - chr3_4:66764612-66764631 Msa0515520:intron 35.0%
! AATTGGCAAAAGCATACTGT+GGG - chr3_4:66764613-66764632 Msa0515520:intron 35.0%
GTTTCTCCAATGTAGATGAA+AGG + chr3_4:66764674-66764693 None:intergenic 35.0%
CATTGGAGAAACTTTATGCA+TGG - chr3_4:66764682-66764701 Msa0515520:intron 35.0%
TACACAGTAAATCAGCTAGA+TGG + chr3_4:66764904-66764923 None:intergenic 35.0%
! ACTGTGTATCCTTCTTTTAG+GGG - chr3_4:66764916-66764935 Msa0515520:intron 35.0%
! ATGCAAGAGATTGAAAGCAT+TGG - chr3_4:66765213-66765232 Msa0515520:CDS 35.0%
!! TTGAAAGCATTGGATAATCG+AGG - chr3_4:66765223-66765242 Msa0515520:CDS 35.0%
TTAATTAATGCTGCAAGCTG+AGG + chr3_4:66765379-66765398 None:intergenic 35.0%
CAGCTTGCAGCATTAATTAA+TGG - chr3_4:66765379-66765398 Msa0515520:CDS 35.0%
GAGTAGAAATTTCTCAGCTA+AGG - chr3_4:66765452-66765471 Msa0515520:CDS 35.0%
! GCTATCCAATTCCATTTTGT+TGG - chr3_4:66765508-66765527 Msa0515520:CDS 35.0%
TTGCACCAACAAAATGGAAT+TGG + chr3_4:66765516-66765535 None:intergenic 35.0%
! GCTAATTTGCACCAACAAAA+TGG + chr3_4:66765522-66765541 None:intergenic 35.0%
!! GTCAACTAAAGCATTTTTGG+AGG + chr3_4:66765556-66765575 None:intergenic 35.0%
TGAAACAGTTCAACTTTGGA+GGG + chr3_4:66765587-66765606 None:intergenic 35.0%
ATGAAACAGTTCAACTTTGG+AGG + chr3_4:66765588-66765607 None:intergenic 35.0%
GGGATTTCTGATTCATAGAT+AGG + chr3_4:66765627-66765646 None:intergenic 35.0%
CTATTCTCAGCGTCTTATAA+AGG + chr3_4:66765721-66765740 None:intergenic 35.0%
TATAAGACGCTGAGAATAGA+TGG - chr3_4:66765722-66765741 Msa0515520:CDS 35.0%
TCAATCTCTCGAGCTATAAT+TGG + chr3_4:66765777-66765796 None:intergenic 35.0%
GCGTTTATCTCACATTATGT+CGG - chr3_4:66765809-66765828 Msa0515520:CDS 35.0%
!!! CATCATTTTTGGTTTTGGGA+TGG - chr3_4:66765875-66765894 Msa0515520:CDS 35.0%
TCAGCAGATTGATAAGAATG+TGG - chr3_4:66766031-66766050 Msa0515520:CDS 35.0%
!! CTCCCTTTCAAGTTCTATAA+TGG + chr3_4:66766163-66766182 None:intergenic 35.0%
! TTTCTTCAGGTTCATCAAGA+AGG + chr3_4:66766272-66766291 None:intergenic 35.0%
TTGCAGATAATGAAAGCTTG+CGG + chr3_4:66766339-66766358 None:intergenic 35.0%
AGAAACAAGATGAGGAACAA+AGG - chr3_4:66766448-66766467 Msa0515520:CDS 35.0%
TCGAAGTTCAATTCTGATAG+TGG - chr3_4:66766588-66766607 Msa0515520:five_prime_UTR 35.0%
AGAAGAAATTGCATGATGAG+AGG - chr3_4:66766655-66766674 Msa0515520:five_prime_UTR 35.0%
GAAGAAATTGCATGATGAGA+GGG - chr3_4:66766656-66766675 Msa0515520:five_prime_UTR 35.0%
AACTATTAGAAGCTGCATCA+CGG + chr3_4:66766710-66766729 None:intergenic 35.0%
!! CTCTGAAGTGAAACTTTCTA+AGG + chr3_4:66766763-66766782 None:intergenic 35.0%
CTTAGAAAGTTTCACTTCAG+AGG - chr3_4:66766761-66766780 Msa0515520:five_prime_UTR 35.0%
TTTGCAGCTAGAGTTAATCT+TGG - chr3_4:66766866-66766885 Msa0515520:five_prime_UTR 35.0%
AGTTTCAGCAACTAAAGCTT+TGG - chr3_4:66766939-66766958 Msa0515520:five_prime_UTR 35.0%
GTTTCAGCAACTAAAGCTTT+GGG - chr3_4:66766940-66766959 Msa0515520:five_prime_UTR 35.0%
! ATTTTGCCTGACTGTAGATT+GGG + chr3_4:66767013-66767032 None:intergenic 35.0%
! AATTTTGCCTGACTGTAGAT+TGG + chr3_4:66767014-66767033 None:intergenic 35.0%
!! TGGTGGAGATTTTTCAGAGA+AGG + chr3_4:66762100-66762119 None:intergenic 40.0%
!! CATAGAGATTGGTGATGTTG+GGG + chr3_4:66762163-66762182 None:intergenic 40.0%
!! GCATAGAGATTGGTGATGTT+GGG + chr3_4:66762164-66762183 None:intergenic 40.0%
AGGGAAAATGGCATAGAGAT+TGG + chr3_4:66762174-66762193 None:intergenic 40.0%
TGTACTCTGAACTCAATCCT+TGG - chr3_4:66762261-66762280 Msa0515520:three_prime_UTR 40.0%
!! TAGAGATGGATCGATTTGGA+AGG + chr3_4:66762320-66762339 None:intergenic 40.0%
CATCTCTATTCACCCATCAA+CGG - chr3_4:66762332-66762351 Msa0515520:CDS 40.0%
AGTGAAATCTGACCGTTGAT+GGG + chr3_4:66762347-66762366 None:intergenic 40.0%
! GAAGAGGTTGTGTTTGTTAC+TGG + chr3_4:66762412-66762431 None:intergenic 40.0%
! TTGCTCTGCATTTTGTGAAG+AGG + chr3_4:66762428-66762447 None:intergenic 40.0%
! TGTAAATTAACATGGGCTGC+GGG - chr3_4:66762596-66762615 Msa0515520:CDS 40.0%
TAAATAAGAAAGATGCGCGG+CGG + chr3_4:66762713-66762732 None:intergenic 40.0%
TTACAGTCTCTCAGAGACAT+CGG - chr3_4:66762730-66762749 Msa0515520:CDS 40.0%
CAAGATCATGATCATCATGG+TGG + chr3_4:66762897-66762916 None:intergenic 40.0%
! TTCTTGTTCTCGTTCAGGTT+CGG + chr3_4:66763031-66763050 None:intergenic 40.0%
! TAGATCACAGATTTTCCACG+TGG + chr3_4:66763213-66763232 None:intergenic 40.0%
GTTCTCCTTATGGTGGTTAT+GGG - chr3_4:66763277-66763296 Msa0515520:intron 40.0%
GGGTATAATGGTATGAATGG+AGG - chr3_4:66763297-66763316 Msa0515520:intron 40.0%
GGTATGAATGGAGGTAATAG+TGG - chr3_4:66763306-66763325 Msa0515520:intron 40.0%
!!! TGGTTTTTTTGGTTTTCCGG+CGG - chr3_4:66763326-66763345 Msa0515520:intron 40.0%
!! GAAGTTATGGATTAGGGCTA+GGG - chr3_4:66763469-66763488 Msa0515520:intron 40.0%
GTCCTGATTCAAAAGAAGTG+AGG - chr3_4:66763511-66763530 Msa0515520:intron 40.0%
! TCCCTCACTTCTTTTGAATC+AGG + chr3_4:66763516-66763535 None:intergenic 40.0%
TCCGTCTCATCTTCTAATTC+AGG + chr3_4:66763552-66763571 None:intergenic 40.0%
ATTAGAAGATGAGACGGAAC+AGG - chr3_4:66763554-66763573 Msa0515520:intron 40.0%
AGAGGAAGTGGAGAAAGAAA+AGG - chr3_4:66763623-66763642 Msa0515520:intron 40.0%
AGTGGAGAAAGAAAAGGAAG+AGG - chr3_4:66763629-66763648 Msa0515520:intron 40.0%
! GTTGTTAAGGGTGGAGATTT+TGG - chr3_4:66763651-66763670 Msa0515520:intron 40.0%
!! TGAAGGTACTTCGAATTCGA+AGG - chr3_4:66763674-66763693 Msa0515520:intron 40.0%
TAGTGAGGGAAGTTCCAAAA+CGG - chr3_4:66763722-66763741 Msa0515520:CDS 40.0%
TTTCATAGTAGCGAAGGTAG+TGG - chr3_4:66763750-66763769 Msa0515520:CDS 40.0%
! TTTCTAGGAGGAGATCCTTT+AGG + chr3_4:66763822-66763841 None:intergenic 40.0%
GATCTCCTCCTAGAAAGAAA+GGG - chr3_4:66763826-66763845 Msa0515520:CDS 40.0%
ATCTCCTCCTAGAAAGAAAG+GGG - chr3_4:66763827-66763846 Msa0515520:CDS 40.0%
AAACTCACCCCTTTCTTTCT+AGG + chr3_4:66763837-66763856 None:intergenic 40.0%
GTTACAACAGTAGAGGTTGA+TGG - chr3_4:66763885-66763904 Msa0515520:CDS 40.0%
TTAAGCACTTTGTCTCCACA+TGG - chr3_4:66763930-66763949 Msa0515520:CDS 40.0%
TTTGTCTCCACATGGAACTA+GGG - chr3_4:66763938-66763957 Msa0515520:CDS 40.0%
TTTAGATCCCTAGTTCCATG+TGG + chr3_4:66763948-66763967 None:intergenic 40.0%
TGGAACTAGGGATCTAAAAG+AGG - chr3_4:66763950-66763969 Msa0515520:intron 40.0%
GGGATCTAAAAGAGGTTGTT+AGG - chr3_4:66763958-66763977 Msa0515520:intron 40.0%
TGCTTCTAATCATGGAAGAG+AGG - chr3_4:66764004-66764023 Msa0515520:intron 40.0%
!! TCAAGACTTGCTGCATTTAG+AGG - chr3_4:66764065-66764084 Msa0515520:intron 40.0%
!! TGCTGCATTTAGAGGTATCA+AGG - chr3_4:66764073-66764092 Msa0515520:intron 40.0%
AATAGGATAAGGGGCTTGTA+GGG - chr3_4:66764222-66764241 Msa0515520:intron 40.0%
!! GCAGTTGCAGTTTGATTTGA+AGG - chr3_4:66764304-66764323 Msa0515520:intron 40.0%
! ATTGGCAAAAGCATACTGTG+GGG - chr3_4:66764614-66764633 Msa0515520:intron 40.0%
GTGTTGAAACTATATCAGGG+AGG - chr3_4:66765323-66765342 Msa0515520:CDS 40.0%
AGGGAGGATACATAAACTGA+GGG - chr3_4:66765339-66765358 Msa0515520:CDS 40.0%
GCTGAGAAATTTCTACTCAC+AGG + chr3_4:66765450-66765469 None:intergenic 40.0%
ATCTCACATTATGTCGGAAG+TGG - chr3_4:66765815-66765834 Msa0515520:CDS 40.0%
AGAAAAACACTCAACCGTGT+AGG + chr3_4:66765918-66765937 None:intergenic 40.0%
! TACACGGTTGAGTGTTTTTC+TGG - chr3_4:66765917-66765936 Msa0515520:CDS 40.0%
!!! GTTGAGTGTTTTTCTGGAGT+TGG - chr3_4:66765923-66765942 Msa0515520:CDS 40.0%
! TTTTACTCTCCATGATAGCC+TGG + chr3_4:66766089-66766108 None:intergenic 40.0%
!! ACTGGTTTGCAAAGAGATGA+AGG - chr3_4:66766129-66766148 Msa0515520:CDS 40.0%
TTGAAAGGGAGCTTCTGAAT+TGG - chr3_4:66766172-66766191 Msa0515520:CDS 40.0%
GTGCACACAGTTCAACAATT+GGG - chr3_4:66766194-66766213 Msa0515520:CDS 40.0%
GAACCTGAAGAAACAGATGA+TGG - chr3_4:66766279-66766298 Msa0515520:CDS 40.0%
! ACACCATCATCTGTTTCTTC+AGG + chr3_4:66766285-66766304 None:intergenic 40.0%
TAGAATTTCAGAAAGAGGGG+TGG - chr3_4:66766380-66766399 Msa0515520:CDS 40.0%
TCAAAAGCTGCATGAGCTAT+GGG - chr3_4:66766425-66766444 Msa0515520:CDS 40.0%
AACAAGATGAGGAACAAAGG+CGG - chr3_4:66766451-66766470 Msa0515520:CDS 40.0%
! TTTGTCATGCTCGTGTTTTG+AGG + chr3_4:66766547-66766566 None:intergenic 40.0%
ACGAGCATGACAAAGTTTCA+GGG - chr3_4:66766553-66766572 Msa0515520:five_prime_UTR 40.0%
CCTAATGGCTTCCTTATGTT+TGG + chr3_4:66766682-66766701 None:intergenic 40.0%
CCAAACATAAGGAAGCCATT+AGG - chr3_4:66766679-66766698 Msa0515520:five_prime_UTR 40.0%
AGAAAGTTTCACTTCAGAGG+TGG - chr3_4:66766764-66766783 Msa0515520:five_prime_UTR 40.0%
AACTCTAGCTGCAAAATTGG+TGG + chr3_4:66766861-66766880 None:intergenic 40.0%
!!! CCTCTTCAGAGAGTTTTAAG+AGG + chr3_4:66766906-66766925 None:intergenic 40.0%
! CCTCTTAAAACTCTCTGAAG+AGG - chr3_4:66766903-66766922 Msa0515520:five_prime_UTR 40.0%
!! GGCATAGAGATTGGTGATGT+TGG + chr3_4:66762165-66762184 None:intergenic 45.0%
GAGTTCAGAGTACAGAGTGT+GGG + chr3_4:66762255-66762274 None:intergenic 45.0%
TGAGTTCAGAGTACAGAGTG+TGG + chr3_4:66762256-66762275 None:intergenic 45.0%
!! ATGGATCGATTTGGAAGGAG+GGG + chr3_4:66762315-66762334 None:intergenic 45.0%
!! GATGGATCGATTTGGAAGGA+GGG + chr3_4:66762316-66762335 None:intergenic 45.0%
!! AGATGGATCGATTTGGAAGG+AGG + chr3_4:66762317-66762336 None:intergenic 45.0%
! CGTTGATGGGTGAATAGAGA+TGG + chr3_4:66762334-66762353 None:intergenic 45.0%
GAGTGAAATCTGACCGTTGA+TGG + chr3_4:66762348-66762367 None:intergenic 45.0%
! GGTTGTGTTTGTTACTGGGA+GGG + chr3_4:66762407-66762426 None:intergenic 45.0%
! AGGTTGTGTTTGTTACTGGG+AGG + chr3_4:66762408-66762427 None:intergenic 45.0%
CAGTTCAGTGAGGGTAATAG+TGG + chr3_4:66762499-66762518 None:intergenic 45.0%
ATGGCTGTTCAGTTCAGTGA+GGG + chr3_4:66762508-66762527 None:intergenic 45.0%
! GTAAATTAACATGGGCTGCG+GGG - chr3_4:66762597-66762616 Msa0515520:CDS 45.0%
! TAAATTAACATGGGCTGCGG+GGG - chr3_4:66762598-66762617 Msa0515520:CDS 45.0%
TTCTCTGCAGAGAGTTACCA+CGG + chr3_4:66762644-66762663 None:intergenic 45.0%
GAAGAAGGAGTAGAACCAGT+TGG + chr3_4:66762796-66762815 None:intergenic 45.0%
AGAAGGCAATGTGAGAACAG+GGG + chr3_4:66762842-66762861 None:intergenic 45.0%
GAGAAGGCAATGTGAGAACA+GGG + chr3_4:66762843-66762862 None:intergenic 45.0%
GAGGATTTACCTTCACGAGA+AGG + chr3_4:66762859-66762878 None:intergenic 45.0%
! TTCAGGTTCGGATTCAGCTT+CGG + chr3_4:66763019-66763038 None:intergenic 45.0%
CCTCTTTCTTGTTCTCGTTC+AGG + chr3_4:66763036-66763055 None:intergenic 45.0%
CCTGAACGAGAACAAGAAAG+AGG - chr3_4:66763033-66763052 Msa0515520:CDS 45.0%
! AAGAAGAAGATGGTTCGGGT+TGG + chr3_4:66763092-66763111 None:intergenic 45.0%
CCGTAAGAAGAAGATGGTTC+GGG + chr3_4:66763096-66763115 None:intergenic 45.0%
CCCGAACCATCTTCTTCTTA+CGG - chr3_4:66763093-66763112 Msa0515520:intron 45.0%
CCCGTAAGAAGAAGATGGTT+CGG + chr3_4:66763097-66763116 None:intergenic 45.0%
CCGAACCATCTTCTTCTTAC+GGG - chr3_4:66763094-66763113 Msa0515520:intron 45.0%
ATGAAGAAATCTGCACCACG+TGG - chr3_4:66763195-66763214 Msa0515520:intron 45.0%
!! CAATGGACTGGTTCTCCTTA+TGG - chr3_4:66763267-66763286 Msa0515520:intron 45.0%
GGTTCTCCTTATGGTGGTTA+TGG - chr3_4:66763276-66763295 Msa0515520:intron 45.0%
!!! GGTTTTTTTGGTTTTCCGGC+GGG - chr3_4:66763327-66763346 Msa0515520:intron 45.0%
ACCACCGAGAGTTTCTACTT+GGG - chr3_4:66763395-66763414 Msa0515520:intron 45.0%
!! GGAAGTTATGGATTAGGGCT+AGG - chr3_4:66763468-66763487 Msa0515520:intron 45.0%
AAAGAAGTGAGGGAGAGAGA+AGG - chr3_4:66763522-66763541 Msa0515520:intron 45.0%
AAGAAGTGAGGGAGAGAGAA+GGG - chr3_4:66763523-66763542 Msa0515520:intron 45.0%
GAAGAAGAAGAAAGTGGCAG+AGG - chr3_4:66763605-66763624 Msa0515520:intron 45.0%
AAGGAAGAGGTTGTTAAGGG+TGG - chr3_4:66763642-66763661 Msa0515520:intron 45.0%
!! AAGGGTGGAGATTTTGGTGA+AGG - chr3_4:66763657-66763676 Msa0515520:intron 45.0%
CTACTACTCACCTGTTGCAA+TGG + chr3_4:66763705-66763724 None:intergenic 45.0%
CAACAGGTGAGTAGTAGTGA+GGG - chr3_4:66763708-66763727 Msa0515520:CDS 45.0%
! ACTATGAAACCGCACCGTTT+TGG + chr3_4:66763739-66763758 None:intergenic 45.0%
GGATCTCCTCCTAGAAAGAA+AGG - chr3_4:66763825-66763844 Msa0515520:CDS 45.0%
!!! AGGGGTGAGTTTTGAGATTG+AGG - chr3_4:66763845-66763864 Msa0515520:CDS 45.0%
!!! GGGGTGAGTTTTGAGATTGA+GGG - chr3_4:66763846-66763865 Msa0515520:CDS 45.0%
CTTTGTCTCCACATGGAACT+AGG - chr3_4:66763937-66763956 Msa0515520:CDS 45.0%
AGAGGTTGCATTTCTTCTCG+AGG - chr3_4:66764022-66764041 Msa0515520:intron 45.0%
GCAAGTCTTGACTGATAAGG+TGG + chr3_4:66764056-66764075 None:intergenic 45.0%
GCAGCAAGTCTTGACTGATA+AGG + chr3_4:66764059-66764078 None:intergenic 45.0%
CAATAGGATAAGGGGCTTGT+AGG - chr3_4:66764221-66764240 Msa0515520:intron 45.0%
!! ATCCTTCTTTTAGGGGACGA+AGG - chr3_4:66764923-66764942 Msa0515520:intron 45.0%
ACTGTTCTCAGGATGAAGAG+AGG - chr3_4:66765167-66765186 Msa0515520:CDS 45.0%
CAGGGAGGATACATAAACTG+AGG - chr3_4:66765338-66765357 Msa0515520:CDS 45.0%
TCTCAGCGTCTTATAAAGGC+AGG + chr3_4:66765717-66765736 None:intergenic 45.0%
TAGATGGTCACGTGGTATAG+AGG - chr3_4:66765738-66765757 Msa0515520:CDS 45.0%
AGATGGTCACGTGGTATAGA+GGG - chr3_4:66765739-66765758 Msa0515520:CDS 45.0%
TAGCTCGAGAGATTGATGAG+AGG - chr3_4:66765781-66765800 Msa0515520:CDS 45.0%
ATTATGTCGGAAGTGGCTGA+AGG - chr3_4:66765822-66765841 Msa0515520:CDS 45.0%
TGATAGCCTGGAACTGTTTC+TGG + chr3_4:66766077-66766096 None:intergenic 45.0%
GAAACAGTTCCAGGCTATCA+TGG - chr3_4:66766077-66766096 Msa0515520:CDS 45.0%
GGTGCACACAGTTCAACAAT+TGG - chr3_4:66766193-66766212 Msa0515520:CDS 45.0%
CACAGTTCAACAATTGGGTC+AGG - chr3_4:66766199-66766218 Msa0515520:CDS 45.0%
ATTTGAATGGGTGGCTCAGA+AGG - chr3_4:66766244-66766263 Msa0515520:CDS 45.0%
!! AATCCGACTTGGAGAGTAAG+GGG + chr3_4:66766310-66766329 None:intergenic 45.0%
!! CAATCCGACTTGGAGAGTAA+GGG + chr3_4:66766311-66766330 None:intergenic 45.0%
CTCAAAAGCTGCATGAGCTA+TGG - chr3_4:66766424-66766443 Msa0515520:CDS 45.0%
GCTATGGGAGAAACAAGATG+AGG - chr3_4:66766440-66766459 Msa0515520:CDS 45.0%
AGGAACAAAGGCGGAAAATC+AGG - chr3_4:66766460-66766479 Msa0515520:CDS 45.0%
GGAACAAAGGCGGAAAATCA+GGG - chr3_4:66766461-66766480 Msa0515520:CDS 45.0%
CACGAGCATGACAAAGTTTC+AGG - chr3_4:66766552-66766571 Msa0515520:five_prime_UTR 45.0%
TTCGCCACTGGATGATCTAA+AGG - chr3_4:66766614-66766633 Msa0515520:five_prime_UTR 45.0%
TCCACCTTTAGATCATCCAG+TGG + chr3_4:66766621-66766640 None:intergenic 45.0%
TGATGAGAGGGCCAAACATA+AGG - chr3_4:66766668-66766687 Msa0515520:five_prime_UTR 45.0%
AATCGTCCATGTTCTCTACG+AGG + chr3_4:66766829-66766848 None:intergenic 45.0%
! GACTGTAGATTGGGTGTTAC+AGG + chr3_4:66767004-66767023 None:intergenic 45.0%
GTAACACCCAATCTACAGTC+AGG - chr3_4:66767004-66767023 Msa0515520:five_prime_UTR 45.0%
GGAAGCAGCATGGGAAAATG+TGG + chr3_4:66762459-66762478 None:intergenic 50.0%
GATGGCTGTTCAGTTCAGTG+AGG + chr3_4:66762509-66762528 None:intergenic 50.0%
TCTCTGCAGAGAGTTACCAC+GGG + chr3_4:66762643-66762662 None:intergenic 50.0%
CGAGAAGGCAATGTGAGAAC+AGG + chr3_4:66762844-66762863 None:intergenic 50.0%
CTCACATTGCCTTCTCGTGA+AGG - chr3_4:66762847-66762866 Msa0515520:CDS 50.0%
TCAGGTTCGGATTCAGCTTC+GGG + chr3_4:66763018-66763037 None:intergenic 50.0%
!! TCGGGTTGGTGTTCGTATTG+AGG + chr3_4:66763078-66763097 None:intergenic 50.0%
!! TGGACTGGTTCTCCTTATGG+TGG - chr3_4:66763270-66763289 Msa0515520:intron 50.0%
GTAGAAACTCTCGGTGGTGA+AGG + chr3_4:66763393-66763412 None:intergenic 50.0%
CACCACCGAGAGTTTCTACT+TGG - chr3_4:66763394-66763413 Msa0515520:intron 50.0%
TCCCAAGTAGAAACTCTCGG+TGG + chr3_4:66763399-66763418 None:intergenic 50.0%
GACGGAACAGGAAACTGTGA+AGG - chr3_4:66763566-66763585 Msa0515520:intron 50.0%
GGAACAGGAAACTGTGAAGG+AGG - chr3_4:66763569-66763588 Msa0515520:intron 50.0%
GAAGAAAGTGGCAGAGGAAG+TGG - chr3_4:66763611-66763630 Msa0515520:intron 50.0%
!! GAAGGAAGTGCCATTGCAAC+AGG - chr3_4:66763692-66763711 Msa0515520:CDS 50.0%
GCAACAGGTGAGTAGTAGTG+AGG - chr3_4:66763707-66763726 Msa0515520:CDS 50.0%
AGGGAAGTTCCAAAACGGTG+CGG - chr3_4:66763727-66763746 Msa0515520:CDS 50.0%
GTGCGGTTTCATAGTAGCGA+AGG - chr3_4:66763744-66763763 Msa0515520:CDS 50.0%
CTCACCCCTTTCTTTCTAGG+AGG + chr3_4:66763834-66763853 None:intergenic 50.0%
TGAGGGTGATGAAGATGCGA+CGG - chr3_4:66763863-66763882 Msa0515520:CDS 50.0%
TGCGACGGTTACAACAGTAG+AGG - chr3_4:66763878-66763897 Msa0515520:CDS 50.0%
GGATAGGAAGGTGGCTTAGA+AGG + chr3_4:66764552-66764571 None:intergenic 50.0%
CACCTTCCTATCCTCCATCT+GGG - chr3_4:66764559-66764578 Msa0515520:intron 50.0%
! AATTGTATTGGCGGCCCAGA+TGG + chr3_4:66764576-66764595 None:intergenic 50.0%
AGCCTTCGTCCCCTAAAAGA+AGG + chr3_4:66764928-66764947 None:intergenic 50.0%
AGCGTCTTATAAAGGCAGGC+AGG + chr3_4:66765713-66765732 None:intergenic 50.0%
GCTGAGAATAGATGGTCACG+TGG - chr3_4:66765730-66765749 Msa0515520:CDS 50.0%
!! GGAACTGTTTCTGGTGGCAT+TGG + chr3_4:66766068-66766087 None:intergenic 50.0%
ATGCCACCAGAAACAGTTCC+AGG - chr3_4:66766068-66766087 Msa0515520:CDS 50.0%
!! TAGCCTGGAACTGTTTCTGG+TGG + chr3_4:66766074-66766093 None:intergenic 50.0%
TTGCCCCTTACTCTCCAAGT+CGG - chr3_4:66766304-66766323 Msa0515520:CDS 50.0%
!! CCAATCCGACTTGGAGAGTA+AGG + chr3_4:66766312-66766331 None:intergenic 50.0%
CCTTACTCTCCAAGTCGGAT+TGG - chr3_4:66766309-66766328 Msa0515520:CDS 50.0%
! CAGGGCAGAGTATCTCACAA+AGG - chr3_4:66766479-66766498 Msa0515520:CDS 50.0%
TAGAGCTTTGCGCACCGAAA+TGG - chr3_4:66766518-66766537 Msa0515520:exon 50.0%
AGAGCTTTGCGCACCGAAAT+GGG - chr3_4:66766519-66766538 Msa0515520:exon 50.0%
!! TGATAGTGGTGTTTCGCCAC+TGG - chr3_4:66766602-66766621 Msa0515520:five_prime_UTR 50.0%
GCCACTGGATGATCTAAAGG+TGG - chr3_4:66766617-66766636 Msa0515520:five_prime_UTR 50.0%
TGCATCACGGACAAGCCTAA+TGG + chr3_4:66766697-66766716 None:intergenic 50.0%
AGAGGTGGTGAAAGCTCATG+AGG - chr3_4:66766779-66766798 Msa0515520:five_prime_UTR 50.0%
! GCTTTGGGTGTGTAAACGTC+AGG - chr3_4:66766955-66766974 Msa0515520:five_prime_UTR 50.0%
GGTGTGTAAACGTCAGGACA+TGG - chr3_4:66766961-66766980 Msa0515520:five_prime_UTR 50.0%
CTCTGCAGAGAGTTACCACG+GGG + chr3_4:66762642-66762661 None:intergenic 55.0%
! GGCGAGAGCGTATCGTTGAT+CGG + chr3_4:66762692-66762711 None:intergenic 55.0%
GAGACATCGGAGAAGCTCTG+AGG - chr3_4:66762743-66762762 Msa0515520:CDS 55.0%
CGGATTCAGCTTCGGGTGTT+CGG + chr3_4:66763011-66763030 None:intergenic 55.0%
TCAAGAACCCGAGAGACACG+TGG - chr3_4:66763233-66763252 Msa0515520:intron 55.0%
AGATTCCGCCACGTGTCTCT+CGG + chr3_4:66763244-66763263 None:intergenic 55.0%
! ACGTGGCGGAATCTGGACAA+TGG - chr3_4:66763250-66763269 Msa0515520:intron 55.0%
GCGGAATCTGGACAATGGAC+TGG - chr3_4:66763255-66763274 Msa0515520:intron 55.0%
GAAACTCTCGGTGGTGAAGG+TGG + chr3_4:66763390-66763409 None:intergenic 55.0%
CCAGATGGAGGATAGGAAGG+TGG + chr3_4:66764561-66764580 None:intergenic 55.0%
CCACCTTCCTATCCTCCATC+TGG - chr3_4:66764558-66764577 Msa0515520:intron 55.0%
AAGAGGGGTGGCAGATGCTA+TGG - chr3_4:66766392-66766411 Msa0515520:CDS 55.0%
AGAGGGGTGGCAGATGCTAT+GGG - chr3_4:66766393-66766412 Msa0515520:CDS 55.0%
CTGCAGCCTCGTAGAGAACA+TGG - chr3_4:66766820-66766839 Msa0515520:five_prime_UTR 55.0%
CACGGGGAACTCCTCCAGTT+TGG + chr3_4:66762626-66762645 None:intergenic 60.0%
CAAACTGGAGGAGTTCCCCG+TGG - chr3_4:66762624-66762643 Msa0515520:CDS 60.0%
AGAACCCGAGAGACACGTGG+CGG - chr3_4:66763236-66763255 Msa0515520:intron 60.0%
GATTCCGCCACGTGTCTCTC+GGG + chr3_4:66763243-66763262 None:intergenic 60.0%
! GAGAGACACGTGGCGGAATC+TGG - chr3_4:66763243-66763262 Msa0515520:intron 60.0%
! GGCTAGGGTTAGCGTCGAGT+GGG - chr3_4:66763484-66763503 Msa0515520:intron 60.0%
GGCCCAGATGGAGGATAGGA+AGG + chr3_4:66764564-66764583 None:intergenic 60.0%
! TGTATTGGCGGCCCAGATGG+AGG + chr3_4:66764573-66764592 None:intergenic 60.0%
TGCGGAGCTCCAATCCGACT+TGG + chr3_4:66766321-66766340 None:intergenic 60.0%
CTCGGTGGTGAAGGTGGAGC+CGG + chr3_4:66763384-66763403 None:intergenic 65.0%
! GGGCTAGGGTTAGCGTCGAG+TGG - chr3_4:66763483-66763502 Msa0515520:intron 65.0%
TGGCGGCCCAGATGGAGGAT+AGG + chr3_4:66764568-66764587 None:intergenic 65.0%
CTGCGGGGGCTCCAAACTGG+AGG - chr3_4:66762612-66762631 Msa0515520:CDS 70.0%
GCAGGCGTAGAAGGTCCCGC+CGG + chr3_4:66763345-66763364 None:intergenic 70.0%
GGTGAAGGTGGAGCCGGAGC+CGG + chr3_4:66763378-66763397 None:intergenic 70.0%
GGGCTGCGGGGGCTCCAAAC+TGG - chr3_4:66762609-66762628 Msa0515520:CDS 75.0%
GGAGGCGGCGCAGGCGTAGA+AGG + chr3_4:66763354-66763373 None:intergenic 75.0%
GAAGGTGGAGCCGGAGCCGG+CGG + chr3_4:66763375-66763394 None:intergenic 75.0%
! TACGCCTGCGCCGCCTCCGC+CGG - chr3_4:66763356-66763375 Msa0515520:intron 80.0%
!!! TGCGCCGCCTCCGCCGGCTC+CGG - chr3_4:66763362-66763381 Msa0515520:intron 85.0%
! GGAGCCGGAGCCGGCGGAGG+CGG + chr3_4:66763369-66763388 None:intergenic 85.0%
! GGTGGAGCCGGAGCCGGCGG+AGG + chr3_4:66763372-66763391 None:intergenic 85.0%
! GGAGCCGGCGGAGGCGGCGC+AGG + chr3_4:66763363-66763382 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 66762043 66767095 66762043 ID=Msa0515520;Name=Msa0515520
chr3_4 mRNA 66762043 66767095 66762043 ID=Msa0515520-mRNA-1;Parent=Msa0515520;Name=Msa0515520-mRNA-1;_AED=0.05;_eAED=0.05;_QI=564|0|0.5|0.75|0.66|1|4|262|862
chr3_4 exon 66762043 66763100 66762043 ID=Msa0515520-mRNA-1:exon:17238;Parent=Msa0515520-mRNA-1
chr3_4 exon 66763689 66763960 66763689 ID=Msa0515520-mRNA-1:exon:17237;Parent=Msa0515520-mRNA-1
chr3_4 exon 66764813 66764853 66764813 ID=Msa0515520-mRNA-1:exon:17236;Parent=Msa0515520-mRNA-1
chr3_4 exon 66765052 66767095 66765052 ID=Msa0515520-mRNA-1:exon:17235;Parent=Msa0515520-mRNA-1
chr3_4 five_prime_UTR 66766532 66767095 66766532 ID=Msa0515520-mRNA-1:five_prime_utr;Parent=Msa0515520-mRNA-1
chr3_4 CDS 66765052 66766531 66765052 ID=Msa0515520-mRNA-1:cds;Parent=Msa0515520-mRNA-1
chr3_4 CDS 66764813 66764853 66764813 ID=Msa0515520-mRNA-1:cds;Parent=Msa0515520-mRNA-1
chr3_4 CDS 66763689 66763960 66763689 ID=Msa0515520-mRNA-1:cds;Parent=Msa0515520-mRNA-1
chr3_4 CDS 66762305 66763100 66762305 ID=Msa0515520-mRNA-1:cds;Parent=Msa0515520-mRNA-1
chr3_4 three_prime_UTR 66762043 66762304 66762043 ID=Msa0515520-mRNA-1:three_prime_utr;Parent=Msa0515520-mRNA-1
Gene Sequence

>Msa0515520

ATGGGCTGCGGGGGCTCCAAACTGGAGGAGTTCCCCGTGGTAACTCTCTGCAGAGAACGCAAAAACTTTCTCAAAAACGCTTCCGATCAACGATACGCTCTCGCCGCCGCGCATCTTTCTTATTTACAGTCTCTCAGAGACATCGGAGAAGCTCTGAGGAGATTCTCCGATCAAGATCTTTTTCTTCCAACTGGTTCTACTCCTTCTTCTTCTTCTTCTTCTTCAATTTCTTCCCCTGTTCTCACATTGCCTTCTCGTGAAGGTAAATCCTCTAAAAATAGTAGTAACCACCATGATGATCATGATCTTGAGTACGATGATGATTCTCATTTGAATCTTTCTTCTGGATCGGAGTTGAGTTCACCTTCTTCAGATCATGTTCATCATCATCAACATGAACACCGAACACCCGAAGCTGAATCCGAACCTGAACGAGAACAAGAAAGAGGATTTGAATATGGACACGAACCTCAATACGAACACCAACCCGAACCATCTTCTTCTTACGGGTATAATTATCCATATCCATATCCATATCAGCAAGATTGGAATCAAAATCAACCAGGGGTTAATAGTTATGCTTATTATATGAAGAAATCTGCACCACGTGGAAAATCTGTGATCTATCAAGAACCCGAGAGACACGTGGCGGAATCTGGACAATGGACTGGTTCTCCTTATGGTGGTTATGGGTATAATGGTATGAATGGAGGTAATAGTGGTTTTTTTGGTTTTCCGGCGGGACCTTCTACGCCTGCGCCGCCTCCGCCGGCTCCGGCTCCACCTTCACCACCGAGAGTTTCTACTTGGGATTTTCTTAACTTTTTTGAGAGTGTTGACAATAATAATTATTCTGGTTATGGAAGTTATGGATTAGGGCTAGGGTTAGCGTCGAGTGGGAGTAGTCCTGATTCAAAAGAAGTGAGGGAGAGAGAAGGGATTCCTGAATTAGAAGATGAGACGGAACAGGAAACTGTGAAGGAGGTTCGTCATGAGAAGAAGAAGAAGAAAGTGGCAGAGGAAGTGGAGAAAGAAAAGGAAGAGGTTGTTAAGGGTGGAGATTTTGGTGAAGGTACTTCGAATTCGAAGGAAGTGCCATTGCAACAGGTGAGTAGTAGTGAGGGAAGTTCCAAAACGGTGCGGTTTCATAGTAGCGAAGGTAGTGGTGATTCGATTTCTTCTAGTGAAAAATTGAGTCCTGATAATGTTGTTCCTAAAGGATCTCCTCCTAGAAAGAAAGGGGTGAGTTTTGAGATTGAGGGTGATGAAGATGCGACGGTTACAACAGTAGAGGTTGATGGTGAATCTTCTATGTTGAGTAGCTTAAGCACTTTGTCTCCACATGGAACTAGGGATCTAAAAGAGGTTGTTAGGGAAATTAGAGATGAGTTTGAGACTGCTTCTAATCATGGAAGAGAGGTTGCATTTCTTCTCGAGGTTTACAAACCACCTTATCAGTCAAGACTTGCTGCATTTAGAGTTTTGTGCTTCAAGAAAATGCAGTTGCAGTTTGATTTGAAGGATGAAGAGAGGTTAAGAGCTATTTATGAGAAGCAATGCAAGAGATTGAAAGCATTGGATAATCGAGGAGCCGAAGCTACTAAAATTGATGCTACTGAGTCATCAATACGAAAGTTGCTAACAAAGATAAACATTTGCATCAAAAGTGTTGAAACTATATCAGGGAGGATACATAAACTGAGGGATGAAGAATTAGAGCCTCAGCTTGCAGCATTAATTAATGGGTATGAAATTGCTTCACTTATTCACTACTATGTTAATATTCATCTCCTATTGATAAGAATGTGGAAATTCATGTTCCAATGCCACCAGAAACAGTTCCAGGCTATCATGGAGAGTAAAACTCAATCTCTCAAATTAAACACTGGTTTGCAAAGAGATGAAGGTTTGAAAGCCATTATAGAACTTGAAAGGGAGCTTCTGAATTGGTGCACACAGTTCAACAATTGGGTCAGGACTCAAAAATCTTATGTTGAAAATTTGAATGGGTGGCTCAGAAGGTGCCTTCTTGATGAACCTGAAGAAACAGATGATGGTGTTGCCCCTTACTCTCCAAGTCGGATTGGAGCTCCGCAAGCTTTCATTATCTGCAATGATTGGCAGCAAGCAATGAATAGAATTTCAGAAAGAGGGGTGGCAGATGCTATGGGCGAATTTGCTCAAAAGCTGCATGAGCTATGGGAGAAACAAGATGAGGAACAAAGGCGGAAAATCAGGGCAGAGTATCTCACAAAGGATTTTGAGAAACAACTTAGAGCTTTGCGCACCGAAATGGGAGCCTCAAAACACGAGCATGACAAAGTTTCAGGGAAGACTTCATTGTCGAAGTTCAATTCTGATAGTGGTGTTTCGCCACTGGATGATCTAAAGGTGGATTTAGATTCTATGAAGAAGAAATTGCATGATGAGAGGGCCAAACATAAGGAAGCCATTAGGCTTGTCCGTGATGCAGCTTCTAATAGTTTACAAACTGGTTTGGTTCCCATTTTTAAGACCTTAGAAAGTTTCACTTCAGAGGTGGTGAAAGCTCATGAGGAAGTCAGACTTCAAAATGCTGCAGCCTCGTAG
Protein sequence

>Msa0515520

MGCGGSKLEEFPVVTLCRERKNFLKNASDQRYALAAAHLSYLQSLRDIGEALRRFSDQDLFLPTGSTPSSSSSSSISSPVLTLPSREGKSSKNSSNHHDDHDLEYDDDSHLNLSSGSELSSPSSDHVHHHQHEHRTPEAESEPEREQERGFEYGHEPQYEHQPEPSSSYGYNYPYPYPYQQDWNQNQPGVNSYAYYMKKSAPRGKSVIYQEPERHVAESGQWTGSPYGGYGYNGMNGGNSGFFGFPAGPSTPAPPPPAPAPPSPPRVSTWDFLNFFESVDNNNYSGYGSYGLGLGLASSGSSPDSKEVREREGIPELEDETEQETVKEVRHEKKKKKVAEEVEKEKEEVVKGGDFGEGTSNSKEVPLQQVSSSEGSSKTVRFHSSEGSGDSISSSEKLSPDNVVPKGSPPRKKGVSFEIEGDEDATVTTVEVDGESSMLSSLSTLSPHGTRDLKEVVREIRDEFETASNHGREVAFLLEVYKPPYQSRLAAFRVLCFKKMQLQFDLKDEERLRAIYEKQCKRLKALDNRGAEATKIDATESSIRKLLTKINICIKSVETISGRIHKLRDEELEPQLAALINGYEIASLIHYYVNIHLLLIRMWKFMFQCHQKQFQAIMESKTQSLKLNTGLQRDEGLKAIIELERELLNWCTQFNNWVRTQKSYVENLNGWLRRCLLDEPEETDDGVAPYSPSRIGAPQAFIICNDWQQAMNRISERGVADAMGEFAQKLHELWEKQDEEQRRKIRAEYLTKDFEKQLRALRTEMGASKHEHDKVSGKTSLSKFNSDSGVSPLDDLKVDLDSMKKKLHDERAKHKEAIRLVRDAASNSLQTGLVPIFKTLESFTSEVVKAHEEVRLQNAAAS*