AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0374390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374390 MtrunA17_Chr3g0124841 82.903 930 67 14 1 861 1 907 0.0 1251
Msa0374390 MtrunA17_Chr5g0448571 33.259 448 211 7 448 850 352 756 1.95e-65 234
Msa0374390 MtrunA17_Chr5g0448571 54.237 59 27 0 1 59 1 59 4.66e-13 73.2
Msa0374390 MtrunA17_Chr3g0130761 29.106 615 287 13 303 860 259 781 4.20e-61 221
Msa0374390 MtrunA17_Chr3g0143731 29.659 381 204 5 484 856 358 682 1.38e-44 172
Msa0374390 MtrunA17_Chr4g0072011 26.804 582 299 14 227 739 139 662 3.96e-39 155
Msa0374390 MtrunA17_Chr4g0052471 79.775 89 15 1 497 585 110 195 3.65e-38 141
Msa0374390 MtrunA17_Chr4g0052471 90.909 44 4 0 451 494 5 48 1.28e-19 87.8
Msa0374390 MtrunA17_Chr1g0211271 27.298 359 225 6 504 853 388 719 8.47e-36 145
Msa0374390 MtrunA17_Chr7g0250681 24.891 458 263 10 450 853 405 835 3.42e-32 134
Msa0374390 MtrunA17_Chr2g0298171 33.065 248 137 5 500 736 639 868 2.70e-30 129
Msa0374390 MtrunA17_Chr5g0405741 24.370 357 235 6 500 853 307 631 3.04e-30 127
Msa0374390 MtrunA17_Chr8g0335341 23.689 553 311 12 367 853 208 715 2.39e-29 125
Msa0374390 MtrunA17_Chr3g0118401 28.185 259 167 4 492 749 452 692 3.11e-29 125
Msa0374390 MtrunA17_Chr3g0118401 45.946 74 34 1 1 68 1 74 1.71e-11 68.2
Msa0374390 MtrunA17_Chr5g0440551 28.163 245 152 4 500 740 443 667 1.21e-27 120
Msa0374390 MtrunA17_Chr5g0440551 54.386 57 26 0 1 57 1 57 1.06e-11 68.9
Msa0374390 MtrunA17_Chr3g0139411 22.590 363 257 5 492 854 363 701 5.63e-22 101
Msa0374390 MtrunA17_Chr8g0382541 35.359 181 93 6 566 743 1 160 1.97e-20 91.3
Msa0374390 MtrunA17_Chr2g0331821 21.585 366 258 7 492 853 408 748 2.34e-19 93.6
Msa0374390 MtrunA17_Chr2g0303521 26.703 367 211 14 505 858 313 634 3.58e-18 89.4
Msa0374390 MtrunA17_Chr8g0382551 40.217 92 48 2 1 85 1 92 6.24e-12 68.9
Msa0374390 MtrunA17_Chr4g0004471 20.912 373 250 9 492 855 212 548 5.14e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374390 AT1G21740.1 46.694 983 358 28 1 856 1 944 0.0 696
Msa0374390 AT1G77500.1 45.360 959 345 21 1 861 1 878 0.0 622
Msa0374390 AT4G35240.4 30.662 936 457 22 1 853 1 827 6.38e-92 309
Msa0374390 AT4G35240.3 30.662 936 457 22 1 853 1 827 6.38e-92 309
Msa0374390 AT4G35240.2 30.662 936 457 22 1 853 1 827 9.78e-92 309
Msa0374390 AT4G35240.1 30.662 936 457 22 1 853 1 827 9.78e-92 309
Msa0374390 AT2G17110.1 35.043 351 176 4 500 850 414 712 4.52e-55 204
Msa0374390 AT2G17110.1 54.545 55 25 0 1 55 1 55 1.37e-11 68.9
Msa0374390 AT5G54480.1 28.169 355 204 5 500 853 411 715 3.95e-39 156
Msa0374390 AT3G51290.3 25.143 350 228 4 504 853 306 621 2.74e-32 134
Msa0374390 AT3G51290.2 25.706 354 229 5 500 853 302 621 4.50e-32 134
Msa0374390 AT1G02110.1 24.439 446 257 10 450 844 270 686 2.30e-30 128
Msa0374390 AT3G51290.1 24.286 350 225 4 504 853 306 615 6.43e-29 123
Msa0374390 AT1G20530.1 28.771 358 183 9 451 763 232 562 6.65e-29 123
Msa0374390 AT4G39790.1 29.536 237 151 1 500 736 386 606 1.42e-28 122
Msa0374390 AT2G27090.2 27.823 248 160 3 500 746 439 668 6.10e-28 121
Msa0374390 AT2G27090.2 40.741 81 48 0 1 81 1 81 1.47e-11 68.9
Msa0374390 AT2G27090.1 27.823 248 160 3 500 746 439 668 6.10e-28 121
Msa0374390 AT2G27090.1 40.741 81 48 0 1 81 1 81 1.47e-11 68.9
Msa0374390 AT3G60320.1 23.614 487 289 12 422 853 330 788 7.55e-28 121
Msa0374390 AT4G30130.3 27.208 566 303 19 227 739 132 641 1.42e-27 120
Msa0374390 AT4G30130.1 27.208 566 303 19 227 739 132 641 1.42e-27 120
Msa0374390 AT2G19090.1 29.323 266 143 5 492 739 486 724 4.08e-25 112
Msa0374390 AT5G25590.1 22.222 459 275 9 451 855 330 760 2.03e-21 100
Msa0374390 AT1G52320.1 21.813 353 244 8 492 839 414 739 3.92e-17 86.7
Msa0374390 AT2G34670.2 22.905 358 231 8 505 853 353 674 4.07e-17 86.7
Msa0374390 AT1G52320.2 21.813 353 244 8 492 839 437 762 7.33e-17 85.9
Msa0374390 AT1G52320.5 21.813 353 244 8 492 839 437 762 7.33e-17 85.9
Msa0374390 AT1G52320.3 21.813 353 244 8 492 839 111 436 3.00e-15 79.7
Msa0374390 AT1G52320.4 21.813 353 244 8 492 839 111 436 3.00e-15 79.7
Msa0374390 AT4G30130.4 28.822 399 217 14 227 588 132 500 3.52e-11 67.4
Msa0374390 AT4G30130.2 28.822 399 217 14 227 588 132 500 3.52e-11 67.4

Find 278 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAGCCTGGAACTGTTTC+TGG 0.194296 3_1:+73830019 None:intergenic
AAACTCACCCCTTTCTTTCT+AGG 0.194413 3_1:+73832258 None:intergenic
CACGAGCATGACAAAGTTTC+AGG 0.222711 3_1:-73829541 Msa0374390:CDS
TCTCATTTGAATCTTTCTTC+TGG 0.225408 3_1:-73833164 Msa0374390:CDS
CAGCTTGCAGCATTAATTAA+TGG 0.228181 3_1:-73830714 Msa0374390:CDS
GGTTCTCCTTATGGTGGTTA+TGG 0.230280 3_1:-73832813 Msa0374390:CDS
GACTGTAGATTGGGTGTTAC+AGG 0.233168 3_1:+73829092 None:intergenic
TGATTCCAATCTTGTTGATA+TGG 0.253430 3_1:+73832951 None:intergenic
GTTGACAATAATAATTATTC+TGG 0.253727 3_1:-73832651 Msa0374390:CDS
ATTAACTCTAGCTGCAAAAT+TGG 0.254729 3_1:+73829232 None:intergenic
GAAGAGGTTGTGTTTGTTAC+TGG 0.258512 3_1:+73833680 None:intergenic
AATAATAATTATTCTGGTTA+TGG 0.263471 3_1:-73832645 Msa0374390:CDS
TCAAGACTTGCTGCATTTAG+AGG 0.270388 3_1:-73832027 Msa0374390:intron
GGGATCTAAAAGAGGTTGTT+AGG 0.275615 3_1:-73832134 Msa0374390:CDS
CAATCTTGTTGATATGGATA+TGG 0.277701 3_1:+73832957 None:intergenic
CTCCCTTTCAAGTTCTATAA+TGG 0.279518 3_1:+73829933 None:intergenic
ACTATGAAACCGCACCGTTT+TGG 0.283793 3_1:+73832356 None:intergenic
TCCGTCTCATCTTCTAATTC+AGG 0.285195 3_1:+73832543 None:intergenic
GTGGAATAATAATACTAAAA+TGG 0.291431 3_1:+73833612 None:intergenic
AAAAGTGTTGAAACTATATC+AGG 0.292364 3_1:-73830774 Msa0374390:CDS
GGTTATGGAAGTTATGGATT+AGG 0.294831 3_1:-73832630 Msa0374390:CDS
GGAGCCGGAGCCGGCGGAGG+CGG 0.296226 3_1:+73832726 None:intergenic
TCTTGTTCTTGTTCTCGTTC+AGG 0.303268 3_1:+73833062 None:intergenic
CCTAATGGCTTCCTTATGTT+TGG 0.304816 3_1:+73829414 None:intergenic
TATTCTGGTTATGGAAGTTA+TGG 0.304828 3_1:-73832636 Msa0374390:CDS
GGAGTATATAGTTAGGAAAT+TGG 0.312716 3_1:+73833989 None:intergenic
TTTCTAGGAGGAGATCCTTT+AGG 0.318934 3_1:+73832273 None:intergenic
GTTATGGAAGTTATGGATTA+GGG 0.320121 3_1:-73832629 Msa0374390:CDS
AGGAACAAAGGCGGAAAATC+AGG 0.327990 3_1:-73829633 Msa0374390:CDS
GGAAGTTATGGATTAGGGTT+AGG 0.329740 3_1:-73832624 Msa0374390:CDS
GTTCTCCTTATGGTGGTTAT+GGG 0.330786 3_1:-73832812 Msa0374390:CDS
TTTGCATTTGCATTTGCATT+TGG 0.331122 3_1:+73834047 None:intergenic
CAATGGACTGGTTCTCCTTA+TGG 0.331408 3_1:-73832822 Msa0374390:CDS
ACACCATCATCTGTTTCTTC+AGG 0.331566 3_1:+73829811 None:intergenic
TAGAGCTTTGCGCACCGAAA+TGG 0.331955 3_1:-73829575 Msa0374390:CDS
CCTTTAGGAACAACATTATC+AGG 0.332468 3_1:+73832288 None:intergenic
GAGAGACACGTGGCGGAATC+TGG 0.345695 3_1:-73832846 Msa0374390:CDS
TGCGCCGCCTCCGCCGGCTC+CGG 0.347174 3_1:-73832730 Msa0374390:CDS
TGTTGATATGGATATGGATA+TGG 0.347686 3_1:+73832963 None:intergenic
AGCTTGCAGCATTAATTAAT+GGG 0.348005 3_1:-73830713 Msa0374390:CDS
GTTGTTAAGGGTGGAGATTT+TGG 0.350423 3_1:-73832441 Msa0374390:CDS
GAAGAAAGTGGCAGAGGAAG+TGG 0.352265 3_1:-73832481 Msa0374390:CDS
AGTTTCAGCAACTAAAGCTT+TGG 0.356209 3_1:-73829154 Msa0374390:three_prime_UTR
AGAAAAGGAAGAGGTTGTTA+AGG 0.362522 3_1:-73832454 Msa0374390:CDS
CAAGAAAGAGGATTTGAATA+TGG 0.364165 3_1:-73833044 Msa0374390:CDS
GCAGTTGCAGTTTGATTTGA+AGG 0.368463 3_1:-73831788 Msa0374390:intron
GGAGCCGGCGGAGGCGGCGC+AGG 0.371955 3_1:+73832732 None:intergenic
TTCATTTATTTATTGATTGT+AGG 0.380009 3_1:-73829046 Msa0374390:three_prime_UTR
TACGCCTGCGCCGCCTCCGC+CGG 0.382792 3_1:-73832736 Msa0374390:CDS
AGATGGATCGTGGATCGATT+TGG 0.383055 3_1:+73833775 None:intergenic
TATGGTGGTTATGGGTATAA+TGG 0.383537 3_1:-73832804 Msa0374390:CDS
CACCACCGAGAGTTTCTACT+TGG 0.383628 3_1:-73832698 Msa0374390:CDS
CCGAACCATCTTCTTCTTAC+GGG 0.385216 3_1:-73832995 Msa0374390:CDS
CACGGGGAACTCCTCCAGTT+TGG 0.386880 3_1:+73833466 None:intergenic
TGAGATTTAGATTTAAGAAA+AGG 0.388460 3_1:+73833885 None:intergenic
TTCTTGTTCTCGTTCAGGTT+CGG 0.391928 3_1:+73833067 None:intergenic
GGAACTGTTTCTGGTGGCAT+TGG 0.392548 3_1:+73830028 None:intergenic
GGAGGCGGCGCAGGCGTAGA+AGG 0.400533 3_1:+73832741 None:intergenic
CGGATTCAGCCTCGGGTGTT+CGG 0.402108 3_1:+73833087 None:intergenic
CCCGTAAGAAGAAGATGGTT+CGG 0.403321 3_1:+73832995 None:intergenic
CCCGAACCATCTTCTTCTTA+CGG 0.406997 3_1:-73832996 Msa0374390:CDS
GGTGGAGCCGGAGCCGGCGG+AGG 0.407665 3_1:+73832723 None:intergenic
CTTTCATTATCTGCAATGAT+TGG 0.408806 3_1:-73829750 Msa0374390:CDS
GGCATAGAGATTGGTGATGT+TGG 0.409760 3_1:+73833944 None:intergenic
CGAGAAGGCAATGTGAGAAC+AGG 0.414014 3_1:+73833254 None:intergenic
CATATCCATATCAACAAGAT+TGG 0.414946 3_1:-73832956 Msa0374390:CDS
TAATAGTTTACAAACTGGTT+TGG 0.416201 3_1:-73829371 Msa0374390:CDS
CCAATCCGACTTGGAGAGTA+AGG 0.417005 3_1:+73829784 None:intergenic
CTTTGTCTCCACATGGAACT+AGG 0.419464 3_1:-73832155 Msa0374390:CDS
ATGCCACCAGAAACAGTTCC+AGG 0.420200 3_1:-73830025 Msa0374390:CDS
GTTTCAGCAACTAAAGCTTT+GGG 0.420405 3_1:-73829153 Msa0374390:three_prime_UTR
TTGAAAGGGAGCTTCTGAAT+TGG 0.420884 3_1:-73829921 Msa0374390:CDS
TTCAGGTTCGGATTCAGCCT+CGG 0.423908 3_1:+73833079 None:intergenic
TGTTGTTGGAGTATATAGTT+AGG 0.424558 3_1:+73833982 None:intergenic
AAGAAGTGAGGGAGAGAGAA+GGG 0.424841 3_1:-73832569 Msa0374390:CDS
GGTGAAGGTGGAGCCGGAGC+CGG 0.424911 3_1:+73832717 None:intergenic
AGATTCCGCCACGTGTCTCT+CGG 0.425616 3_1:+73832848 None:intergenic
ATGAATAGAATTTCAGAAAG+AGG 0.426192 3_1:-73829718 Msa0374390:CDS
GGTGCACACAGTTCAACAAT+TGG 0.428625 3_1:-73829900 Msa0374390:CDS
GAAGTTATGGATTAGGGTTA+GGG 0.428805 3_1:-73832623 Msa0374390:CDS
CTCTGAAGTGAAACTTTCTA+AGG 0.429224 3_1:+73829333 None:intergenic
TCTTATGTTGAAAATTTGAA+TGG 0.431188 3_1:-73829862 Msa0374390:CDS
AGAGCTTTGCGCACCGAAAT+GGG 0.431764 3_1:-73829574 Msa0374390:CDS
TTTGAGACTGCTTCTAATCA+TGG 0.432301 3_1:-73832096 Msa0374390:CDS
TCGGGTTGGTGTTCGTATTG+AGG 0.433025 3_1:+73833014 None:intergenic
GAAGGAAGTGCCATTGCAAC+AGG 0.435586 3_1:-73832400 Msa0374390:CDS
GATCTGTAAATTGTTGTTGT+TGG 0.437109 3_1:+73833968 None:intergenic
CTCAAAAGCTGCATGAGCTA+TGG 0.438860 3_1:-73829669 Msa0374390:CDS
AGCATAATGAAGGAAAGAAA+TGG 0.441070 3_1:+73833554 None:intergenic
TCGAAGTTCAATTCTGATAG+TGG 0.442059 3_1:-73829505 Msa0374390:CDS
AAGAGGTTGTGTTTGTTACT+GGG 0.442183 3_1:+73833681 None:intergenic
AAGAGGGGTGGCAGATGCTA+TGG 0.442230 3_1:-73829701 Msa0374390:CDS
TTTGCAGCTAGAGTTAATCT+TGG 0.445326 3_1:-73829227 Msa0374390:three_prime_UTR
GAAGAAGAAGAAAGTGGCAG+AGG 0.447265 3_1:-73832487 Msa0374390:CDS
TGTAAATTAACATGGGCTGC+GGG 0.449614 3_1:-73833493 Msa0374390:exon
GCATAGAGATTGGTGATGTT+GGG 0.455238 3_1:+73833945 None:intergenic
TTTGTGGTGTTGTTGAGAAA+TGG 0.457183 3_1:+73833530 None:intergenic
TTTGAATCTTTCTTCTGGAT+CGG 0.458184 3_1:-73833159 Msa0374390:CDS
TCAGGTTCGGATTCAGCCTC+GGG 0.458879 3_1:+73833080 None:intergenic
GGATCTCCTCCTAGAAAGAA+AGG 0.460253 3_1:-73832267 Msa0374390:CDS
CTCGGTGGTGAAGGTGGAGC+CGG 0.465082 3_1:+73832711 None:intergenic
CCGTAAGAAGAAGATGGTTC+GGG 0.466321 3_1:+73832996 None:intergenic
CCTGATAATGTTGTTCCTAA+AGG 0.466850 3_1:-73832288 Msa0374390:CDS
ATTAGAAGATGAGACGGAAC+AGG 0.466915 3_1:-73832538 Msa0374390:CDS
ACTGGTTTGCAAAGAGATGA+AGG 0.467754 3_1:-73829964 Msa0374390:CDS
GAAAAGGAAGAGGTTGTTAA+GGG 0.470149 3_1:-73832453 Msa0374390:CDS
GCTTCTAATAGTTTACAAAC+TGG 0.474058 3_1:-73829376 Msa0374390:CDS
TGATAGTGGTGTTTCGCCAC+TGG 0.474624 3_1:-73829491 Msa0374390:CDS
AGGGAAAATGGCATAGAGAT+TGG 0.481322 3_1:+73833935 None:intergenic
TGATGAGAGGGCCAAACATA+AGG 0.481807 3_1:-73829425 Msa0374390:CDS
TAGAGTTAATCTTGGTATGT+AGG 0.481953 3_1:-73829219 Msa0374390:three_prime_UTR
AAAGAAGTGAGGGAGAGAGA+AGG 0.482867 3_1:-73832570 Msa0374390:CDS
AAGCCATTATAGAACTTGAA+AGG 0.483499 3_1:-73829936 Msa0374390:CDS
CGACAAATTGTAAATTAACA+TGG 0.483870 3_1:-73833501 Msa0374390:exon
TGCATCACGGACAAGCCTAA+TGG 0.484621 3_1:+73829399 None:intergenic
GAGTGAAATCTGACCGTTGA+TGG 0.485438 3_1:+73833744 None:intergenic
TTTCTTCAGGTTCATCAAGA+AGG 0.487287 3_1:+73829824 None:intergenic
AACTCTAGCTGCAAAATTGG+TGG 0.487478 3_1:+73829235 None:intergenic
CAGTTCAGTGAGGGTAATAG+TGG 0.499151 3_1:+73833593 None:intergenic
TACTAAAATGGAAGCAGCAT+GGG 0.501036 3_1:+73833624 None:intergenic
TGAATAGAATTTCAGAAAGA+GGG 0.501325 3_1:-73829717 Msa0374390:CDS
AAGGAAGAGGTTGTTAAGGG+TGG 0.503136 3_1:-73832450 Msa0374390:CDS
ATTTGAATGGGTGGCTCAGA+AGG 0.504891 3_1:-73829849 Msa0374390:CDS
TCAAAAGCTGCATGAGCTAT+GGG 0.507138 3_1:-73829668 Msa0374390:CDS
AGAGGAAGTGGAGAAAGAAA+AGG 0.507961 3_1:-73832469 Msa0374390:CDS
GAAATTGAAGAAGAAGAAGA+AGG 0.510083 3_1:+73833281 None:intergenic
TGCGGAGCTCCAATCCGACT+TGG 0.511426 3_1:+73829775 None:intergenic
GCTTTGGGTGTGTAAACGTC+AGG 0.511721 3_1:-73829138 Msa0374390:three_prime_UTR
GGAAAGAAATGGAAGAAAGA+TGG 0.512909 3_1:+73833565 None:intergenic
AGTGGAGAAAGAAAAGGAAG+AGG 0.513148 3_1:-73832463 Msa0374390:CDS
CCTTACTCTCCAAGTCGGAT+TGG 0.513152 3_1:-73829784 Msa0374390:CDS
AATGGTATGAATGGTAATAG+TGG 0.513370 3_1:-73832786 Msa0374390:CDS
GATCTCCTCCTAGAAAGAAA+GGG 0.513989 3_1:-73832266 Msa0374390:CDS
GTGCACACAGTTCAACAATT+GGG 0.515126 3_1:-73829899 Msa0374390:CDS
GAAACAGTTCCAGGCTATCA+TGG 0.515239 3_1:-73830016 Msa0374390:CDS
AGCCATTATAGAACTTGAAA+GGG 0.515704 3_1:-73829935 Msa0374390:CDS
CTTAGAAAGTTTCACTTCAG+AGG 0.516214 3_1:-73829332 Msa0374390:CDS
CCAAACATAAGGAAGCCATT+AGG 0.516949 3_1:-73829414 Msa0374390:CDS
GTGAAAATTAGTGAAGGAAA+AGG 0.518538 3_1:+73833717 None:intergenic
GATTCCGCCACGTGTCTCTC+GGG 0.519830 3_1:+73832849 None:intergenic
CACAGTTCAACAATTGGGTC+AGG 0.519909 3_1:-73829894 Msa0374390:CDS
GGATCTAAAAGAGGTTGTTA+GGG 0.519957 3_1:-73832133 Msa0374390:CDS
GGCGAGAGCGTAACGTTGAT+CGG 0.521112 3_1:+73833400 None:intergenic
CTACTACTCACCTGTTGCAA+TGG 0.521870 3_1:+73832390 None:intergenic
CTCACATTGCCTTCTCGTGA+AGG 0.524220 3_1:-73833248 Msa0374390:CDS
GAAGGTGGAGCCGGAGCCGG+CGG 0.524547 3_1:+73832720 None:intergenic
CTTATGTTGAAAATTTGAAT+GGG 0.525221 3_1:-73829861 Msa0374390:CDS
ATGCAAGAGATTGAAAGCAT+TGG 0.527869 3_1:-73830880 Msa0374390:CDS
CGAGAACAAGAACAAGAAAG+AGG 0.531310 3_1:-73833056 Msa0374390:CDS
TTGTAAATTAACATGGGCTG+CGG 0.536115 3_1:-73833494 Msa0374390:exon
GTTACAACAGTAGAGGTTGA+TGG 0.539166 3_1:-73832207 Msa0374390:CDS
TTCGCCACTGGATGATCTAA+AGG 0.539779 3_1:-73829479 Msa0374390:CDS
TCGTGGATCGATTTGGAAGG+AGG 0.540605 3_1:+73833782 None:intergenic
GTAGAAACTCTCGGTGGTGA+AGG 0.541943 3_1:+73832702 None:intergenic
GAGAAATGGAAGCATAATGA+AGG 0.542341 3_1:+73833544 None:intergenic
TATGGGTATAATGGTATGAA+TGG 0.543771 3_1:-73832795 Msa0374390:CDS
CTCACCCCTTTCTTTCTAGG+AGG 0.547699 3_1:+73832261 None:intergenic
CTGCAGCCTCGTAGAGAACA+TGG 0.549697 3_1:-73829273 Msa0374390:exon
GCAGCAAGTCTTGACTGATA+AGG 0.550165 3_1:+73832036 None:intergenic
TGTACTCTGAACTCAATCCT+TGG 0.551084 3_1:-73833835 Msa0374390:five_prime_UTR
CCTCTTAAAACTCTCTGAAG+AGG 0.552545 3_1:-73829190 Msa0374390:three_prime_UTR
GAGGATTTACCTTCACGAGA+AGG 0.553408 3_1:+73833239 None:intergenic
TTTGTCTCCACATGGAACTA+GGG 0.554562 3_1:-73832154 Msa0374390:CDS
ACGAGCATGACAAAGTTTCA+GGG 0.557309 3_1:-73829540 Msa0374390:CDS
TCCTGAATTAGAAGATGAGA+CGG 0.558744 3_1:-73832544 Msa0374390:CDS
GGTTGTGTTTGTTACTGGGA+GGG 0.559165 3_1:+73833685 None:intergenic
CAATCTCTCAAATTAAACAC+TGG 0.563399 3_1:-73829982 Msa0374390:CDS
TTAATTAATGCTGCAAGCTG+AGG 0.567648 3_1:+73830717 None:intergenic
GAAGAAATTGCATGATGAGA+GGG 0.568060 3_1:-73829437 Msa0374390:CDS
TCCTGATTCAAAAGAAGTGA+GGG 0.568796 3_1:-73832580 Msa0374390:CDS
GAAACTCTCGGTGGTGAAGG+TGG 0.570393 3_1:+73832705 None:intergenic
CAACAGGTGAGTAGTAGTGA+GGG 0.571312 3_1:-73832384 Msa0374390:CDS
GAAGAAGGAGTAGAACCAGT+TGG 0.571423 3_1:+73833296 None:intergenic
TTATACCCATAACCACCATA+AGG 0.575087 3_1:+73832807 None:intergenic
GGTGTGTAAACGTCAGGACA+TGG 0.578226 3_1:-73829132 Msa0374390:three_prime_UTR
AGAGGGGTGGCAGATGCTAT+GGG 0.579128 3_1:-73829700 Msa0374390:CDS
GCGGAATCTGGACAATGGAC+TGG 0.581256 3_1:-73832834 Msa0374390:CDS
GGGTTAGGGTTAGCGTCGAG+TGG 0.581567 3_1:-73832609 Msa0374390:CDS
TGTTAATTTACAATTTGTCG+TGG 0.581922 3_1:+73833504 None:intergenic
CGTTGATGGGTGAATAGAGA+TGG 0.582930 3_1:+73833758 None:intergenic
TTATACCCGTAAGAAGAAGA+TGG 0.583571 3_1:+73832990 None:intergenic
TAAATTAACATGGGCTGCGG+GGG 0.584717 3_1:-73833491 Msa0374390:exon
ACTCAAGATCATGATCATCA+TGG 0.585920 3_1:+73833198 None:intergenic
CGTGGATCGATTTGGAAGGA+GGG 0.587926 3_1:+73833783 None:intergenic
GTAACACCCAATCTACAGTC+AGG 0.590215 3_1:-73829089 Msa0374390:three_prime_UTR
AGAGGTTGCATTTCTTCTCG+AGG 0.590287 3_1:-73832070 Msa0374390:CDS
TGGAACTAGGGATCTAAAAG+AGG 0.591949 3_1:-73832142 Msa0374390:CDS
GACAAATTGTAAATTAACAT+GGG 0.594367 3_1:-73833500 Msa0374390:exon
GTCCTGATTCAAAAGAAGTG+AGG 0.595426 3_1:-73832581 Msa0374390:CDS
TGCTTCTAATCATGGAAGAG+AGG 0.596147 3_1:-73832088 Msa0374390:CDS
TTCTCTGCAAAGAGTTACCA+CGG 0.598360 3_1:+73833448 None:intergenic
GTAAATTAACATGGGCTGCG+GGG 0.598567 3_1:-73833492 Msa0374390:exon
TGAAGGTACTTCGAATTCGA+AGG 0.599893 3_1:-73832418 Msa0374390:CDS
TTTCATAGTAGCGAAGGTAG+TGG 0.601039 3_1:-73832342 Msa0374390:CDS
GCAAGTCTTGACTGATAAGG+TGG 0.601503 3_1:+73832039 None:intergenic
AGAAAGTTTCACTTCAGAGG+TGG 0.603559 3_1:-73829329 Msa0374390:CDS
GGAACAAAGGCGGAAAATCA+GGG 0.603888 3_1:-73829632 Msa0374390:CDS
ATGTTGAAAATTTGAATGGG+TGG 0.604696 3_1:-73829858 Msa0374390:CDS
AAAGTGTTGAAACTATATCA+GGG 0.605560 3_1:-73830773 Msa0374390:CDS
TGTGAAGGAGGTTCGTCATG+AGG 0.607752 3_1:-73832511 Msa0374390:CDS
GTATATAGTTAGGAAATTGG+TGG 0.607953 3_1:+73833992 None:intergenic
TTGCCCCTTACTCTCCAAGT+CGG 0.608240 3_1:-73829789 Msa0374390:CDS
TAAGCATAACTATTAACCCC+TGG 0.609549 3_1:+73832921 None:intergenic
GGTTAGGGTTAGCGTCGAGT+GGG 0.610372 3_1:-73832608 Msa0374390:CDS
TGAGGAGAAGAAGAAGAAAG+TGG 0.610426 3_1:-73832493 Msa0374390:CDS
TTACAGTCTCTCAGAGACAT+CGG 0.611826 3_1:-73833359 Msa0374390:CDS
TCAGCAGATTGATAAGAATG+TGG 0.613642 3_1:-73830062 Msa0374390:intron
GTGCGGTTTCATAGTAGCGA+AGG 0.615348 3_1:-73832348 Msa0374390:CDS
GATTGGAATCAAAATCAACC+AGG 0.615492 3_1:-73832939 Msa0374390:CDS
AAATCCCAAGTAGAAACTCT+CGG 0.615723 3_1:+73832693 None:intergenic
AGGGAGGATACATAAACTGA+GGG 0.617129 3_1:-73830754 Msa0374390:CDS
AGAGGTGGTGAAAGCTCATG+AGG 0.617745 3_1:-73829314 Msa0374390:CDS
AGGTTGTGTTTGTTACTGGG+AGG 0.618221 3_1:+73833684 None:intergenic
GCCACTGGATGATCTAAAGG+TGG 0.618305 3_1:-73829476 Msa0374390:CDS
AGAAGAAATTGCATGATGAG+AGG 0.619702 3_1:-73829438 Msa0374390:CDS
ATACTAAAATGGAAGCAGCA+TGG 0.620596 3_1:+73833623 None:intergenic
AATCCGACTTGGAGAGTAAG+GGG 0.620758 3_1:+73829786 None:intergenic
TGGATCGATTTGGAAGGAGG+GGG 0.621361 3_1:+73833785 None:intergenic
CAATCCGACTTGGAGAGTAA+GGG 0.621439 3_1:+73829785 None:intergenic
TGAGGGTGATGAAGATGCGA+CGG 0.622626 3_1:-73832229 Msa0374390:CDS
TAGTGAGGGAAGTTCCAAAA+CGG 0.622761 3_1:-73832370 Msa0374390:CDS
AACTATTAGAAGCTGCATCA+CGG 0.624613 3_1:+73829386 None:intergenic
GAGAAGGCAATGTGAGAACA+GGG 0.624709 3_1:+73833255 None:intergenic
GGATCGTGGATCGATTTGGA+AGG 0.627929 3_1:+73833779 None:intergenic
TTTAGATCCCTAGTTCCATG+TGG 0.631482 3_1:+73832147 None:intergenic
TCTCTGCAAAGAGTTACCAC+GGG 0.632381 3_1:+73833449 None:intergenic
TGGACTGGTTCTCCTTATGG+TGG 0.633553 3_1:-73832819 Msa0374390:CDS
CATCTCTATTCACCCATCAA+CGG 0.634085 3_1:-73833757 Msa0374390:five_prime_UTR
ATCTCCTCCTAGAAAGAAAG+GGG 0.635205 3_1:-73832265 Msa0374390:CDS
ACCACCGAGAGTTTCTACTT+GGG 0.635604 3_1:-73832697 Msa0374390:CDS
GCAACAGGTGAGTAGTAGTG+AGG 0.636074 3_1:-73832385 Msa0374390:CDS
AACAAGATGAGGAACAAAGG+CGG 0.639484 3_1:-73829642 Msa0374390:CDS
TGATGAACATGATCTGAAGA+AGG 0.639709 3_1:+73833125 None:intergenic
AGTGAAATCTGACCGTTGAT+GGG 0.640019 3_1:+73833745 None:intergenic
GACGGAACAGGAAACTGTGA+AGG 0.640183 3_1:-73832526 Msa0374390:CDS
GAATAGAATTTCAGAAAGAG+GGG 0.641585 3_1:-73829716 Msa0374390:CDS
TTGAAAGCATTGGATAATCG+AGG 0.645643 3_1:-73830870 Msa0374390:CDS
CAGGGAGGATACATAAACTG+AGG 0.649011 3_1:-73830755 Msa0374390:CDS
AATTATAACAGAAAGAGCCA+AGG 0.649146 3_1:+73833818 None:intergenic
ATGGCTGTTCAGTTCAGTGA+GGG 0.649245 3_1:+73833584 None:intergenic
ACGTGGCGGAATCTGGACAA+TGG 0.649398 3_1:-73832839 Msa0374390:CDS
AAGAAGAAGATGGTTCGGGT+TGG 0.651087 3_1:+73833000 None:intergenic
CATAGAGATTGGTGATGTTG+GGG 0.651776 3_1:+73833946 None:intergenic
GAACCTGAAGAAACAGATGA+TGG 0.653790 3_1:-73829814 Msa0374390:CDS
GTGGATCGATTTGGAAGGAG+GGG 0.658073 3_1:+73833784 None:intergenic
AGAAACAAGATGAGGAACAA+AGG 0.658720 3_1:-73829645 Msa0374390:CDS
AAACGCGTGAAAATTAGTGA+AGG 0.665024 3_1:+73833711 None:intergenic
ATTGGAATCAAAATCAACCA+GGG 0.671756 3_1:-73832938 Msa0374390:CDS
TAGAATTTCAGAAAGAGGGG+TGG 0.673438 3_1:-73829713 Msa0374390:CDS
GGAAGCAGCATGGGAAAATG+TGG 0.675096 3_1:+73833633 None:intergenic
GGAACAGGAAACTGTGAAGG+AGG 0.675573 3_1:-73832523 Msa0374390:CDS
TTGCAGATAATGAAAGCTTG+CGG 0.678429 3_1:+73829757 None:intergenic
ACATGAACACCGAACACCCG+AGG 0.679265 3_1:-73833096 Msa0374390:CDS
GAGACATCGGAGAAGCTCTG+AGG 0.681296 3_1:-73833346 Msa0374390:CDS
TTAAGCACTTTGTCTCCACA+TGG 0.682460 3_1:-73832162 Msa0374390:CDS
TAGCCTGGAACTGTTTCTGG+TGG 0.687495 3_1:+73830022 None:intergenic
TGCGACGGTTACAACAGTAG+AGG 0.688026 3_1:-73832214 Msa0374390:CDS
ACTGTTCTCAGGATGAAGAG+AGG 0.689314 3_1:-73830926 Msa0374390:intron
ATGAAGAAATCTGCACCACG+TGG 0.690953 3_1:-73832894 Msa0374390:CDS
CAGGGCAGAGTATCTCACAA+AGG 0.692112 3_1:-73829614 Msa0374390:CDS
CAAGATCATGATCATCATGG+TGG 0.695629 3_1:+73833201 None:intergenic
TTGGAATCAAAATCAACCAG+GGG 0.695794 3_1:-73832937 Msa0374390:CDS
GCTATGGGAGAAACAAGATG+AGG 0.701488 3_1:-73829653 Msa0374390:CDS
GCAGGCGTAGAAGGTCCCGC+CGG 0.701500 3_1:+73832750 None:intergenic
AGGGAAGTTCCAAAACGGTG+CGG 0.705993 3_1:-73832365 Msa0374390:CDS
TCAAGAACCCGAGAGACACG+TGG 0.707419 3_1:-73832856 Msa0374390:CDS
GGGTGAATAGAGATGGATCG+TGG 0.710207 3_1:+73833765 None:intergenic
TCCACCTTTAGATCATCCAG+TGG 0.717641 3_1:+73829475 None:intergenic
GATGGCTGTTCAGTTCAGTG+AGG 0.724026 3_1:+73833583 None:intergenic
AGAAGGCAATGTGAGAACAG+GGG 0.739205 3_1:+73833256 None:intergenic
CTCTGCAAAGAGTTACCACG+GGG 0.744877 3_1:+73833450 None:intergenic
TAAATAAGAGAGATGCGCGG+CGG 0.749568 3_1:+73833379 None:intergenic
AATCGTCCATGTTCTCTACG+AGG 0.757312 3_1:+73829267 None:intergenic
CTGTAAATAAGAGAGATGCG+CGG 0.766271 3_1:+73833376 None:intergenic
GTGTTGAAACTATATCAGGG+AGG 0.772755 3_1:-73830770 Msa0374390:CDS
CAAACTGGAGGAGTTCCCCG+TGG 0.774000 3_1:-73833465 Msa0374390:CDS
AGAACCCGAGAGACACGTGG+CGG 0.780648 3_1:-73832853 Msa0374390:CDS
TCCCAAGTAGAAACTCTCGG+TGG 0.798985 3_1:+73832696 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAGATTAAAAAAAGA+GGG + chr3_1:73829170-73829189 None:intergenic 10.0%
!! AATAATAAGATTAAAAAAAG+AGG + chr3_1:73829171-73829190 None:intergenic 10.0%
!! ATAAATTAGTAAATATTGTA+CGG - chr3_1:73832096-73832115 Msa0374390:CDS 10.0%
!! TATTAATAATGAAGATTTAA+GGG + chr3_1:73832840-73832859 None:intergenic 10.0%
!! TTATTAATAATGAAGATTTA+AGG + chr3_1:73832841-73832860 None:intergenic 10.0%
!!! TTAATAATTATCATCATTTT+TGG - chr3_1:73832854-73832873 Msa0374390:CDS 10.0%
!!! AATAATAATTATTCTGGTTA+TGG - chr3_1:73830438-73830457 Msa0374390:intron 15.0%
!!! TTTGAAATTAGTTAAATGTT+AGG - chr3_1:73831808-73831827 Msa0374390:CDS 15.0%
!! TGACATGATATTAAAAAAAA+TGG + chr3_1:73832469-73832488 None:intergenic 15.0%
!!! TTCATTTATTTATTGATTGT+AGG - chr3_1:73834037-73834056 Msa0374390:five_prime_UTR 15.0%
!! TGAGATTTAGATTTAAGAAA+AGG + chr3_1:73829201-73829220 None:intergenic 20.0%
!! GTGGAATAATAATACTAAAA+TGG + chr3_1:73829474-73829493 None:intergenic 20.0%
!! GACAAATTGTAAATTAACAT+GGG - chr3_1:73829583-73829602 Msa0374390:CDS 20.0%
!! GTTGACAATAATAATTATTC+TGG - chr3_1:73830432-73830451 Msa0374390:intron 20.0%
!!! TTTCCTTTTTAGTTCTTTTT+TGG - chr3_1:73831090-73831109 Msa0374390:intron 20.0%
!! AATCCAAAAAAGAACTAAAA+AGG + chr3_1:73831096-73831115 None:intergenic 20.0%
!!! TTTTAGTTCTTTTTTGGATT+TGG - chr3_1:73831096-73831115 Msa0374390:intron 20.0%
!! ATATATGTTGAACTTTATGT+GGG - chr3_1:73831354-73831373 Msa0374390:intron 20.0%
!! ATGTAAATATTACTGTTTAC+AGG - chr3_1:73831455-73831474 Msa0374390:intron 20.0%
!!! AAATTAGTTACTTTATGCAT+GGG - chr3_1:73831743-73831762 Msa0374390:intron 20.0%
!! AACAACATAAATGTATGAAA+GGG + chr3_1:73831965-73831984 None:intergenic 20.0%
!! AAACAACATAAATGTATGAA+AGG + chr3_1:73831966-73831985 None:intergenic 20.0%
!! ACAAATAAGAACAATTTGAA+AGG + chr3_1:73832124-73832143 None:intergenic 20.0%
!!! ATTATCATCATTTTTGGTTT+TGG - chr3_1:73832860-73832879 Msa0374390:CDS 20.0%
!!! TTATCATCATTTTTGGTTTT+GGG - chr3_1:73832861-73832880 Msa0374390:CDS 20.0%
!! TCTTATGTTGAAAATTTGAA+TGG - chr3_1:73833221-73833240 Msa0374390:CDS 20.0%
!! CTTATGTTGAAAATTTGAAT+GGG - chr3_1:73833222-73833241 Msa0374390:CDS 20.0%
! GATTAAAAAAAGAGGGAAAA+TGG + chr3_1:73829163-73829182 None:intergenic 25.0%
! TGTTAATTTACAATTTGTCG+TGG + chr3_1:73829582-73829601 None:intergenic 25.0%
! CGACAAATTGTAAATTAACA+TGG - chr3_1:73829582-73829601 Msa0374390:CDS 25.0%
!!! TAGTGGTTTTTTTTGTTTTC+CGG - chr3_1:73830314-73830333 Msa0374390:intron 25.0%
! AACATTAAGCAATAGGATAA+GGG - chr3_1:73831203-73831222 Msa0374390:intron 25.0%
! CATATATGTTGAACTTTATG+TGG - chr3_1:73831353-73831372 Msa0374390:intron 25.0%
! CTCTATACTATCATTTAATC+AGG - chr3_1:73831408-73831427 Msa0374390:intron 25.0%
! TTAGAAGAAAATTGTATTGG+TGG + chr3_1:73831576-73831595 None:intergenic 25.0%
! GTCTTAGAAGAAAATTGTAT+TGG + chr3_1:73831579-73831598 None:intergenic 25.0%
!!! TTCTTCTAAGACAATGAAAT+TGG - chr3_1:73831587-73831606 Msa0374390:intron 25.0%
! TTTGATATTAACTCTTTCTC+AGG + chr3_1:73831633-73831652 None:intergenic 25.0%
! AATGTAGATGAAAGGTTTAT+CGG + chr3_1:73831657-73831676 None:intergenic 25.0%
! ATGGGAAAAGAAATTATACA+AGG - chr3_1:73831692-73831711 Msa0374390:intron 25.0%
! GAAATTATACAAGGAAGTTA+AGG - chr3_1:73831701-73831720 Msa0374390:intron 25.0%
!! GAAATTAGTTACTTTATGCA+TGG - chr3_1:73831742-73831761 Msa0374390:intron 25.0%
! ATGGGAAAAGAAATTATACA+AGG - chr3_1:73831692-73831711 Msa0374390:intron 25.0%
! GAAATTATACAAGGAAGTTA+AGG - chr3_1:73831701-73831720 Msa0374390:intron 25.0%
! TTCATGAAATTAGAAAACGT+TGG - chr3_1:73831849-73831868 Msa0374390:intron 25.0%
! GTTTGAGAGATGATATAAAT+TGG - chr3_1:73831982-73832001 Msa0374390:intron 25.0%
!!! AAAAGTGTTGAAACTATATC+AGG - chr3_1:73832309-73832328 Msa0374390:CDS 25.0%
!!! AAAGTGTTGAAACTATATCA+GGG - chr3_1:73832310-73832329 Msa0374390:CDS 25.0%
! TTAATGAAACAGTTCAACTT+TGG + chr3_1:73832581-73832600 None:intergenic 25.0%
! CAAAATCAAACATTCCATTA+GGG + chr3_1:73832637-73832656 None:intergenic 25.0%
!!! AATTTGTTGTTTTTCCTACA+CGG - chr3_1:73832891-73832910 Msa0374390:CDS 25.0%
! ATGAATAGAATTTCAGAAAG+AGG - chr3_1:73833365-73833384 Msa0374390:CDS 25.0%
! TGAATAGAATTTCAGAAAGA+GGG - chr3_1:73833366-73833385 Msa0374390:CDS 25.0%
! TAATAGTTTACAAACTGGTT+TGG - chr3_1:73833712-73833731 Msa0374390:five_prime_UTR 25.0%
!!! CTTTCTAAGGTCTTAAAAAT+GGG + chr3_1:73833740-73833759 None:intergenic 25.0%
!!! ACTTTCTAAGGTCTTAAAAA+TGG + chr3_1:73833741-73833760 None:intergenic 25.0%
TTTGCATTTGCATTTGCATT+TGG + chr3_1:73829039-73829058 None:intergenic 30.0%
GTATATAGTTAGGAAATTGG+TGG + chr3_1:73829094-73829113 None:intergenic 30.0%
GGAGTATATAGTTAGGAAAT+TGG + chr3_1:73829097-73829116 None:intergenic 30.0%
TGTTGTTGGAGTATATAGTT+AGG + chr3_1:73829104-73829123 None:intergenic 30.0%
! GATCTGTAAATTGTTGTTGT+TGG + chr3_1:73829118-73829137 None:intergenic 30.0%
AATTATAACAGAAAGAGCCA+AGG + chr3_1:73829268-73829287 None:intergenic 30.0%
GTGAAAATTAGTGAAGGAAA+AGG + chr3_1:73829369-73829388 None:intergenic 30.0%
AGCATAATGAAGGAAAGAAA+TGG + chr3_1:73829532-73829551 None:intergenic 30.0%
TGGAAGAAAAAGATCTTGAT+CGG + chr3_1:73829770-73829789 None:intergenic 30.0%
GAAATTGAAGAAGAAGAAGA+AGG + chr3_1:73829805-73829824 None:intergenic 30.0%
!!! GTGGTTACTACTATTTTTAG+AGG + chr3_1:73829866-73829885 None:intergenic 30.0%
TCTCATTTGAATCTTTCTTC+TGG - chr3_1:73829919-73829938 Msa0374390:CDS 30.0%
TTTGAATCTTTCTTCTGGAT+CGG - chr3_1:73829924-73829943 Msa0374390:CDS 30.0%
CAAGAAAGAGGATTTGAATA+TGG - chr3_1:73830039-73830058 Msa0374390:CDS 30.0%
TGTTGATATGGATATGGATA+TGG + chr3_1:73830123-73830142 None:intergenic 30.0%
CAATCTTGTTGATATGGATA+TGG + chr3_1:73830129-73830148 None:intergenic 30.0%
CATATCCATATCAACAAGAT+TGG - chr3_1:73830127-73830146 Msa0374390:intron 30.0%
TGATTCCAATCTTGTTGATA+TGG + chr3_1:73830135-73830154 None:intergenic 30.0%
ATTGGAATCAAAATCAACCA+GGG - chr3_1:73830145-73830164 Msa0374390:intron 30.0%
TATGGGTATAATGGTATGAA+TGG - chr3_1:73830288-73830307 Msa0374390:intron 30.0%
AATGGTATGAATGGTAATAG+TGG - chr3_1:73830297-73830316 Msa0374390:intron 30.0%
! TATTCTGGTTATGGAAGTTA+TGG - chr3_1:73830447-73830466 Msa0374390:intron 30.0%
! GTTATGGAAGTTATGGATTA+GGG - chr3_1:73830454-73830473 Msa0374390:intron 30.0%
AGATTGTGCTAGAATAATCA+TGG - chr3_1:73831136-73831155 Msa0374390:intron 30.0%
GATTGTGCTAGAATAATCAT+GGG - chr3_1:73831137-73831156 Msa0374390:intron 30.0%
ATGACTGATGTATGTTATGT+AGG - chr3_1:73831162-73831181 Msa0374390:intron 30.0%
TGCTTACAACATTAAGCAAT+AGG - chr3_1:73831196-73831215 Msa0374390:intron 30.0%
CAACATTAAGCAATAGGATA+AGG - chr3_1:73831202-73831221 Msa0374390:intron 30.0%
ACATTAAGCAATAGGATAAG+GGG - chr3_1:73831204-73831223 Msa0374390:intron 30.0%
! TTTTCTTGAAGCACAAAACT+GGG + chr3_1:73831274-73831293 None:intergenic 30.0%
! ATTTTCTTGAAGCACAAAAC+TGG + chr3_1:73831275-73831294 None:intergenic 30.0%
GATAAACCTTTCATCTACAT+TGG - chr3_1:73831656-73831675 Msa0374390:intron 30.0%
ATTGGAGAAACTTTATGCAT+GGG - chr3_1:73831674-73831693 Msa0374390:intron 30.0%
! TTACTGTGTATCCTTCTTTT+AGG - chr3_1:73831905-73831924 Msa0374390:intron 30.0%
! TACTGTGTATCCTTCTTTTA+GGG - chr3_1:73831906-73831925 Msa0374390:intron 30.0%
ATGAAAGGGAAACTATGTAT+AGG + chr3_1:73831951-73831970 None:intergenic 30.0%
! AAAAACAATGCTGATTATGC+AGG + chr3_1:73832052-73832071 None:intergenic 30.0%
TTGTATTTAACACTGTTCTC+AGG - chr3_1:73832146-73832165 Msa0374390:CDS 30.0%
!! AGCATCAATTTTAGTAGCTT+CGG + chr3_1:73832241-73832260 None:intergenic 30.0%
AGCTTGCAGCATTAATTAAT+GGG - chr3_1:73832370-73832389 Msa0374390:CDS 30.0%
AGTAGAAATTTCTCAGCTAA+GGG - chr3_1:73832443-73832462 Msa0374390:CDS 30.0%
!! ACTGTCAACTAAAGCATTTT+TGG + chr3_1:73832549-73832568 None:intergenic 30.0%
TATGAATCAGAAATCCCTAA+TGG - chr3_1:73832620-73832639 Msa0374390:CDS 30.0%
GCAAAATCAAACATTCCATT+AGG + chr3_1:73832638-73832657 None:intergenic 30.0%
TATCATCAATAGTGACAACA+AGG + chr3_1:73832671-73832690 None:intergenic 30.0%
! GTCACTATTGATGATAATGT+AGG - chr3_1:73832675-73832694 Msa0374390:CDS 30.0%
CAATCTCTCAAATTAAACAC+TGG - chr3_1:73833101-73833120 Msa0374390:CDS 30.0%
AAGCCATTATAGAACTTGAA+AGG - chr3_1:73833147-73833166 Msa0374390:CDS 30.0%
AGCCATTATAGAACTTGAAA+GGG - chr3_1:73833148-73833167 Msa0374390:CDS 30.0%
ATGTTGAAAATTTGAATGGG+TGG - chr3_1:73833225-73833244 Msa0374390:CDS 30.0%
CTTTCATTATCTGCAATGAT+TGG - chr3_1:73833333-73833352 Msa0374390:CDS 30.0%
GAATAGAATTTCAGAAAGAG+GGG - chr3_1:73833367-73833386 Msa0374390:CDS 30.0%
GCTTCTAATAGTTTACAAAC+TGG - chr3_1:73833707-73833726 Msa0374390:five_prime_UTR 30.0%
ATTAACTCTAGCTGCAAAAT+TGG + chr3_1:73833854-73833873 None:intergenic 30.0%
TAGAGTTAATCTTGGTATGT+AGG - chr3_1:73833864-73833883 Msa0374390:five_prime_UTR 30.0%
AAACGCGTGAAAATTAGTGA+AGG + chr3_1:73829375-73829394 None:intergenic 35.0%
! AAGAGGTTGTGTTTGTTACT+GGG + chr3_1:73829405-73829424 None:intergenic 35.0%
TACTAAAATGGAAGCAGCAT+GGG + chr3_1:73829462-73829481 None:intergenic 35.0%
ATACTAAAATGGAAGCAGCA+TGG + chr3_1:73829463-73829482 None:intergenic 35.0%
GGAAAGAAATGGAAGAAAGA+TGG + chr3_1:73829521-73829540 None:intergenic 35.0%
! GAGAAATGGAAGCATAATGA+AGG + chr3_1:73829542-73829561 None:intergenic 35.0%
!! TTTGTGGTGTTGTTGAGAAA+TGG + chr3_1:73829556-73829575 None:intergenic 35.0%
!!! CAATTTGTCGTGGTTTTTTG+TGG + chr3_1:73829572-73829591 None:intergenic 35.0%
! TTGTAAATTAACATGGGCTG+CGG - chr3_1:73829589-73829608 Msa0374390:CDS 35.0%
! CAAGATCTTTTTCTTCCAAC+TGG - chr3_1:73829772-73829791 Msa0374390:CDS 35.0%
ACTCAAGATCATGATCATCA+TGG + chr3_1:73829888-73829907 None:intergenic 35.0%
TGATGAACATGATCTGAAGA+AGG + chr3_1:73829961-73829980 None:intergenic 35.0%
TTATACCCGTAAGAAGAAGA+TGG + chr3_1:73830096-73830115 None:intergenic 35.0%
GATTGGAATCAAAATCAACC+AGG - chr3_1:73830144-73830163 Msa0374390:intron 35.0%
TTGGAATCAAAATCAACCAG+GGG - chr3_1:73830146-73830165 Msa0374390:intron 35.0%
TAAGCATAACTATTAACCCC+TGG + chr3_1:73830165-73830184 None:intergenic 35.0%
TTATACCCATAACCACCATA+AGG + chr3_1:73830279-73830298 None:intergenic 35.0%
TATGGTGGTTATGGGTATAA+TGG - chr3_1:73830279-73830298 Msa0374390:intron 35.0%
!!! TGGTTTTTTTTGTTTTCCGG+CGG - chr3_1:73830317-73830336 Msa0374390:intron 35.0%
AAATCCCAAGTAGAAACTCT+CGG + chr3_1:73830393-73830412 None:intergenic 35.0%
GGTTATGGAAGTTATGGATT+AGG - chr3_1:73830453-73830472 Msa0374390:intron 35.0%
!! GAAGTTATGGATTAGGGTTA+GGG - chr3_1:73830460-73830479 Msa0374390:intron 35.0%
TCCTGATTCAAAAGAAGTGA+GGG - chr3_1:73830503-73830522 Msa0374390:intron 35.0%
TCCTGAATTAGAAGATGAGA+CGG - chr3_1:73830539-73830558 Msa0374390:intron 35.0%
AGAAAAGGAAGAGGTTGTTA+AGG - chr3_1:73830629-73830648 Msa0374390:intron 35.0%
GAAAAGGAAGAGGTTGTTAA+GGG - chr3_1:73830630-73830649 Msa0374390:intron 35.0%
! CCTTTAGGAACAACATTATC+AGG + chr3_1:73830798-73830817 None:intergenic 35.0%
! CCTGATAATGTTGTTCCTAA+AGG - chr3_1:73830795-73830814 Msa0374390:CDS 35.0%
GGATCTAAAAGAGGTTGTTA+GGG - chr3_1:73830950-73830969 Msa0374390:intron 35.0%
! TTTGAGACTGCTTCTAATCA+TGG - chr3_1:73830987-73831006 Msa0374390:intron 35.0%
!! TTTTGGATTTGGTTTCGTAG+TGG - chr3_1:73831107-73831126 Msa0374390:intron 35.0%
GATGTATGTTATGTAGGAGA+AGG - chr3_1:73831168-73831187 Msa0374390:intron 35.0%
! AAATTGGCAAAAGCATACTG+TGG - chr3_1:73831603-73831622 Msa0374390:intron 35.0%
! AATTGGCAAAAGCATACTGT+GGG - chr3_1:73831604-73831623 Msa0374390:intron 35.0%
GTTTCTCCAATGTAGATGAA+AGG + chr3_1:73831665-73831684 None:intergenic 35.0%
CATTGGAGAAACTTTATGCA+TGG - chr3_1:73831673-73831692 Msa0374390:intron 35.0%
TACACAGTAAATCAGCTAGA+TGG + chr3_1:73831895-73831914 None:intergenic 35.0%
! ATGCAAGAGATTGAAAGCAT+TGG - chr3_1:73832203-73832222 Msa0374390:CDS 35.0%
!! TTGAAAGCATTGGATAATCG+AGG - chr3_1:73832213-73832232 Msa0374390:CDS 35.0%
TTAATTAATGCTGCAAGCTG+AGG + chr3_1:73832369-73832388 None:intergenic 35.0%
CAGCTTGCAGCATTAATTAA+TGG - chr3_1:73832369-73832388 Msa0374390:CDS 35.0%
GAGTAGAAATTTCTCAGCTA+AGG - chr3_1:73832442-73832461 Msa0374390:CDS 35.0%
! GCTATCCAATTCCATTTTGT+TGG - chr3_1:73832498-73832517 Msa0374390:CDS 35.0%
TTGCACCAACAAAATGGAAT+TGG + chr3_1:73832506-73832525 None:intergenic 35.0%
! GCTAATTTGCACCAACAAAA+TGG + chr3_1:73832512-73832531 None:intergenic 35.0%
!! GTCAACTAAAGCATTTTTGG+AGG + chr3_1:73832546-73832565 None:intergenic 35.0%
TGAAACAGTTCAACTTTGGA+GGG + chr3_1:73832577-73832596 None:intergenic 35.0%
ATGAAACAGTTCAACTTTGG+AGG + chr3_1:73832578-73832597 None:intergenic 35.0%
GGGATTTCTGATTCATAGAT+AGG + chr3_1:73832617-73832636 None:intergenic 35.0%
CTATTCTCAGCGTCTTATAA+AGG + chr3_1:73832711-73832730 None:intergenic 35.0%
TATAAGACGCTGAGAATAGA+TGG - chr3_1:73832712-73832731 Msa0374390:CDS 35.0%
TCAATCTCTCGAGCTATAAT+TGG + chr3_1:73832767-73832786 None:intergenic 35.0%
GCGTTTATCTCACATTATGT+CGG - chr3_1:73832799-73832818 Msa0374390:CDS 35.0%
!!! CATCATTTTTGGTTTTGGGA+TGG - chr3_1:73832865-73832884 Msa0374390:CDS 35.0%
TCAGCAGATTGATAAGAATG+TGG - chr3_1:73833021-73833040 Msa0374390:CDS 35.0%
!! CTCCCTTTCAAGTTCTATAA+TGG + chr3_1:73833153-73833172 None:intergenic 35.0%
! TTTCTTCAGGTTCATCAAGA+AGG + chr3_1:73833262-73833281 None:intergenic 35.0%
TTGCAGATAATGAAAGCTTG+CGG + chr3_1:73833329-73833348 None:intergenic 35.0%
AGAAACAAGATGAGGAACAA+AGG - chr3_1:73833438-73833457 Msa0374390:CDS 35.0%
TCGAAGTTCAATTCTGATAG+TGG - chr3_1:73833578-73833597 Msa0374390:five_prime_UTR 35.0%
AGAAGAAATTGCATGATGAG+AGG - chr3_1:73833645-73833664 Msa0374390:five_prime_UTR 35.0%
GAAGAAATTGCATGATGAGA+GGG - chr3_1:73833646-73833665 Msa0374390:five_prime_UTR 35.0%
AACTATTAGAAGCTGCATCA+CGG + chr3_1:73833700-73833719 None:intergenic 35.0%
!! CTCTGAAGTGAAACTTTCTA+AGG + chr3_1:73833753-73833772 None:intergenic 35.0%
CTTAGAAAGTTTCACTTCAG+AGG - chr3_1:73833751-73833770 Msa0374390:five_prime_UTR 35.0%
TTTGCAGCTAGAGTTAATCT+TGG - chr3_1:73833856-73833875 Msa0374390:five_prime_UTR 35.0%
AGTTTCAGCAACTAAAGCTT+TGG - chr3_1:73833929-73833948 Msa0374390:five_prime_UTR 35.0%
GTTTCAGCAACTAAAGCTTT+GGG - chr3_1:73833930-73833949 Msa0374390:five_prime_UTR 35.0%
! ATTTTGCCTGACTGTAGATT+GGG + chr3_1:73834003-73834022 None:intergenic 35.0%
! AATTTTGCCTGACTGTAGAT+TGG + chr3_1:73834004-73834023 None:intergenic 35.0%
!! TGGTGGAGATTTTTCAGAGA+AGG + chr3_1:73829077-73829096 None:intergenic 40.0%
!! CATAGAGATTGGTGATGTTG+GGG + chr3_1:73829140-73829159 None:intergenic 40.0%
!! GCATAGAGATTGGTGATGTT+GGG + chr3_1:73829141-73829160 None:intergenic 40.0%
AGGGAAAATGGCATAGAGAT+TGG + chr3_1:73829151-73829170 None:intergenic 40.0%
TGTACTCTGAACTCAATCCT+TGG - chr3_1:73829248-73829267 Msa0374390:three_prime_UTR 40.0%
CATCTCTATTCACCCATCAA+CGG - chr3_1:73829326-73829345 Msa0374390:CDS 40.0%
AGTGAAATCTGACCGTTGAT+GGG + chr3_1:73829341-73829360 None:intergenic 40.0%
! GAAGAGGTTGTGTTTGTTAC+TGG + chr3_1:73829406-73829425 None:intergenic 40.0%
! TTGCTCTGCATTTTGTGAAG+AGG + chr3_1:73829422-73829441 None:intergenic 40.0%
! TGTAAATTAACATGGGCTGC+GGG - chr3_1:73829590-73829609 Msa0374390:CDS 40.0%
TTCTCTGCAAAGAGTTACCA+CGG + chr3_1:73829638-73829657 None:intergenic 40.0%
CTGTAAATAAGAGAGATGCG+CGG + chr3_1:73829710-73829729 None:intergenic 40.0%
TTACAGTCTCTCAGAGACAT+CGG - chr3_1:73829724-73829743 Msa0374390:CDS 40.0%
CAAGATCATGATCATCATGG+TGG + chr3_1:73829885-73829904 None:intergenic 40.0%
! TTCTTGTTCTCGTTCAGGTT+CGG + chr3_1:73830019-73830038 None:intergenic 40.0%
TCTTGTTCTTGTTCTCGTTC+AGG + chr3_1:73830024-73830043 None:intergenic 40.0%
CGAGAACAAGAACAAGAAAG+AGG - chr3_1:73830027-73830046 Msa0374390:CDS 40.0%
! TAGATCACAGATTTTCCACG+TGG + chr3_1:73830207-73830226 None:intergenic 40.0%
GTTCTCCTTATGGTGGTTAT+GGG - chr3_1:73830271-73830290 Msa0374390:intron 40.0%
!!! GGTTTTTTTTGTTTTCCGGC+GGG - chr3_1:73830318-73830337 Msa0374390:intron 40.0%
!! GGAAGTTATGGATTAGGGTT+AGG - chr3_1:73830459-73830478 Msa0374390:intron 40.0%
GTCCTGATTCAAAAGAAGTG+AGG - chr3_1:73830502-73830521 Msa0374390:intron 40.0%
! TCCCTCACTTCTTTTGAATC+AGG + chr3_1:73830507-73830526 None:intergenic 40.0%
TCCGTCTCATCTTCTAATTC+AGG + chr3_1:73830543-73830562 None:intergenic 40.0%
ATTAGAAGATGAGACGGAAC+AGG - chr3_1:73830545-73830564 Msa0374390:intron 40.0%
TGAGGAGAAGAAGAAGAAAG+TGG - chr3_1:73830590-73830609 Msa0374390:intron 40.0%
AGAGGAAGTGGAGAAAGAAA+AGG - chr3_1:73830614-73830633 Msa0374390:intron 40.0%
AGTGGAGAAAGAAAAGGAAG+AGG - chr3_1:73830620-73830639 Msa0374390:intron 40.0%
! GTTGTTAAGGGTGGAGATTT+TGG - chr3_1:73830642-73830661 Msa0374390:intron 40.0%
!! TGAAGGTACTTCGAATTCGA+AGG - chr3_1:73830665-73830684 Msa0374390:intron 40.0%
TAGTGAGGGAAGTTCCAAAA+CGG - chr3_1:73830713-73830732 Msa0374390:CDS 40.0%
TTTCATAGTAGCGAAGGTAG+TGG - chr3_1:73830741-73830760 Msa0374390:CDS 40.0%
! TTTCTAGGAGGAGATCCTTT+AGG + chr3_1:73830813-73830832 None:intergenic 40.0%
GATCTCCTCCTAGAAAGAAA+GGG - chr3_1:73830817-73830836 Msa0374390:CDS 40.0%
ATCTCCTCCTAGAAAGAAAG+GGG - chr3_1:73830818-73830837 Msa0374390:CDS 40.0%
AAACTCACCCCTTTCTTTCT+AGG + chr3_1:73830828-73830847 None:intergenic 40.0%
GTTACAACAGTAGAGGTTGA+TGG - chr3_1:73830876-73830895 Msa0374390:CDS 40.0%
TTAAGCACTTTGTCTCCACA+TGG - chr3_1:73830921-73830940 Msa0374390:intron 40.0%
TTTGTCTCCACATGGAACTA+GGG - chr3_1:73830929-73830948 Msa0374390:intron 40.0%
TTTAGATCCCTAGTTCCATG+TGG + chr3_1:73830939-73830958 None:intergenic 40.0%
TGGAACTAGGGATCTAAAAG+AGG - chr3_1:73830941-73830960 Msa0374390:intron 40.0%
GGGATCTAAAAGAGGTTGTT+AGG - chr3_1:73830949-73830968 Msa0374390:intron 40.0%
TGCTTCTAATCATGGAAGAG+AGG - chr3_1:73830995-73831014 Msa0374390:intron 40.0%
!! TCAAGACTTGCTGCATTTAG+AGG - chr3_1:73831056-73831075 Msa0374390:intron 40.0%
!! TGCTGCATTTAGAGGTATCA+AGG - chr3_1:73831064-73831083 Msa0374390:intron 40.0%
AATAGGATAAGGGGCTTGTA+GGG - chr3_1:73831213-73831232 Msa0374390:intron 40.0%
!! GCAGTTGCAGTTTGATTTGA+AGG - chr3_1:73831295-73831314 Msa0374390:intron 40.0%
! ATTGGCAAAAGCATACTGTG+GGG - chr3_1:73831605-73831624 Msa0374390:intron 40.0%
!! TATCCTTCTTTTAGGGACGA+AGG - chr3_1:73831913-73831932 Msa0374390:intron 40.0%
GTGTTGAAACTATATCAGGG+AGG - chr3_1:73832313-73832332 Msa0374390:CDS 40.0%
AGGGAGGATACATAAACTGA+GGG - chr3_1:73832329-73832348 Msa0374390:CDS 40.0%
GCTGAGAAATTTCTACTCAC+AGG + chr3_1:73832440-73832459 None:intergenic 40.0%
ATCTCACATTATGTCGGAAG+TGG - chr3_1:73832805-73832824 Msa0374390:CDS 40.0%
AGAAAAACACTCAACCGTGT+AGG + chr3_1:73832908-73832927 None:intergenic 40.0%
! TACACGGTTGAGTGTTTTTC+TGG - chr3_1:73832907-73832926 Msa0374390:CDS 40.0%
!!! GTTGAGTGTTTTTCTGGAGT+TGG - chr3_1:73832913-73832932 Msa0374390:CDS 40.0%
! TTTTACTCTCCATGATAGCC+TGG + chr3_1:73833079-73833098 None:intergenic 40.0%
!! ACTGGTTTGCAAAGAGATGA+AGG - chr3_1:73833119-73833138 Msa0374390:CDS 40.0%
TTGAAAGGGAGCTTCTGAAT+TGG - chr3_1:73833162-73833181 Msa0374390:CDS 40.0%
GTGCACACAGTTCAACAATT+GGG - chr3_1:73833184-73833203 Msa0374390:CDS 40.0%
GAACCTGAAGAAACAGATGA+TGG - chr3_1:73833269-73833288 Msa0374390:CDS 40.0%
! ACACCATCATCTGTTTCTTC+AGG + chr3_1:73833275-73833294 None:intergenic 40.0%
TAGAATTTCAGAAAGAGGGG+TGG - chr3_1:73833370-73833389 Msa0374390:CDS 40.0%
TCAAAAGCTGCATGAGCTAT+GGG - chr3_1:73833415-73833434 Msa0374390:CDS 40.0%
AACAAGATGAGGAACAAAGG+CGG - chr3_1:73833441-73833460 Msa0374390:CDS 40.0%
! TTTGTCATGCTCGTGTTTTG+AGG + chr3_1:73833537-73833556 None:intergenic 40.0%
ACGAGCATGACAAAGTTTCA+GGG - chr3_1:73833543-73833562 Msa0374390:five_prime_UTR 40.0%
CCTAATGGCTTCCTTATGTT+TGG + chr3_1:73833672-73833691 None:intergenic 40.0%
CCAAACATAAGGAAGCCATT+AGG - chr3_1:73833669-73833688 Msa0374390:five_prime_UTR 40.0%
AGAAAGTTTCACTTCAGAGG+TGG - chr3_1:73833754-73833773 Msa0374390:five_prime_UTR 40.0%
AACTCTAGCTGCAAAATTGG+TGG + chr3_1:73833851-73833870 None:intergenic 40.0%
!!! CCTCTTCAGAGAGTTTTAAG+AGG + chr3_1:73833896-73833915 None:intergenic 40.0%
! CCTCTTAAAACTCTCTGAAG+AGG - chr3_1:73833893-73833912 Msa0374390:five_prime_UTR 40.0%
!! GGCATAGAGATTGGTGATGT+TGG + chr3_1:73829142-73829161 None:intergenic 45.0%
AGATGGATCGTGGATCGATT+TGG + chr3_1:73829311-73829330 None:intergenic 45.0%
! CGTTGATGGGTGAATAGAGA+TGG + chr3_1:73829328-73829347 None:intergenic 45.0%
GAGTGAAATCTGACCGTTGA+TGG + chr3_1:73829342-73829361 None:intergenic 45.0%
! GGTTGTGTTTGTTACTGGGA+GGG + chr3_1:73829401-73829420 None:intergenic 45.0%
! AGGTTGTGTTTGTTACTGGG+AGG + chr3_1:73829402-73829421 None:intergenic 45.0%
CAGTTCAGTGAGGGTAATAG+TGG + chr3_1:73829493-73829512 None:intergenic 45.0%
ATGGCTGTTCAGTTCAGTGA+GGG + chr3_1:73829502-73829521 None:intergenic 45.0%
! GTAAATTAACATGGGCTGCG+GGG - chr3_1:73829591-73829610 Msa0374390:CDS 45.0%
! TAAATTAACATGGGCTGCGG+GGG - chr3_1:73829592-73829611 Msa0374390:CDS 45.0%
TCTCTGCAAAGAGTTACCAC+GGG + chr3_1:73829637-73829656 None:intergenic 45.0%
TAAATAAGAGAGATGCGCGG+CGG + chr3_1:73829707-73829726 None:intergenic 45.0%
GAAGAAGGAGTAGAACCAGT+TGG + chr3_1:73829790-73829809 None:intergenic 45.0%
AGAAGGCAATGTGAGAACAG+GGG + chr3_1:73829830-73829849 None:intergenic 45.0%
GAGAAGGCAATGTGAGAACA+GGG + chr3_1:73829831-73829850 None:intergenic 45.0%
GAGGATTTACCTTCACGAGA+AGG + chr3_1:73829847-73829866 None:intergenic 45.0%
! AAGAAGAAGATGGTTCGGGT+TGG + chr3_1:73830086-73830105 None:intergenic 45.0%
CCGTAAGAAGAAGATGGTTC+GGG + chr3_1:73830090-73830109 None:intergenic 45.0%
CCCGAACCATCTTCTTCTTA+CGG - chr3_1:73830087-73830106 Msa0374390:intron 45.0%
CCCGTAAGAAGAAGATGGTT+CGG + chr3_1:73830091-73830110 None:intergenic 45.0%
CCGAACCATCTTCTTCTTAC+GGG - chr3_1:73830088-73830107 Msa0374390:intron 45.0%
ATGAAGAAATCTGCACCACG+TGG - chr3_1:73830189-73830208 Msa0374390:intron 45.0%
!! CAATGGACTGGTTCTCCTTA+TGG - chr3_1:73830261-73830280 Msa0374390:intron 45.0%
GGTTCTCCTTATGGTGGTTA+TGG - chr3_1:73830270-73830289 Msa0374390:intron 45.0%
ACCACCGAGAGTTTCTACTT+GGG - chr3_1:73830386-73830405 Msa0374390:intron 45.0%
AAAGAAGTGAGGGAGAGAGA+AGG - chr3_1:73830513-73830532 Msa0374390:intron 45.0%
AAGAAGTGAGGGAGAGAGAA+GGG - chr3_1:73830514-73830533 Msa0374390:intron 45.0%
GAAGAAGAAGAAAGTGGCAG+AGG - chr3_1:73830596-73830615 Msa0374390:intron 45.0%
AAGGAAGAGGTTGTTAAGGG+TGG - chr3_1:73830633-73830652 Msa0374390:intron 45.0%
!! AAGGGTGGAGATTTTGGTGA+AGG - chr3_1:73830648-73830667 Msa0374390:intron 45.0%
CTACTACTCACCTGTTGCAA+TGG + chr3_1:73830696-73830715 None:intergenic 45.0%
CAACAGGTGAGTAGTAGTGA+GGG - chr3_1:73830699-73830718 Msa0374390:CDS 45.0%
! ACTATGAAACCGCACCGTTT+TGG + chr3_1:73830730-73830749 None:intergenic 45.0%
GGATCTCCTCCTAGAAAGAA+AGG - chr3_1:73830816-73830835 Msa0374390:CDS 45.0%
!!! AGGGGTGAGTTTTGAGATTG+AGG - chr3_1:73830836-73830855 Msa0374390:CDS 45.0%
!!! GGGGTGAGTTTTGAGATTGA+GGG - chr3_1:73830837-73830856 Msa0374390:CDS 45.0%
CTTTGTCTCCACATGGAACT+AGG - chr3_1:73830928-73830947 Msa0374390:intron 45.0%
AGAGGTTGCATTTCTTCTCG+AGG - chr3_1:73831013-73831032 Msa0374390:intron 45.0%
GCAAGTCTTGACTGATAAGG+TGG + chr3_1:73831047-73831066 None:intergenic 45.0%
GCAGCAAGTCTTGACTGATA+AGG + chr3_1:73831050-73831069 None:intergenic 45.0%
CAATAGGATAAGGGGCTTGT+AGG - chr3_1:73831212-73831231 Msa0374390:intron 45.0%
! AATTGTATTGGTGGCCCAGA+TGG + chr3_1:73831567-73831586 None:intergenic 45.0%
AAGCCTTCGTCCCTAAAAGA+AGG + chr3_1:73831919-73831938 None:intergenic 45.0%
ACTGTTCTCAGGATGAAGAG+AGG - chr3_1:73832157-73832176 Msa0374390:CDS 45.0%
CAGGGAGGATACATAAACTG+AGG - chr3_1:73832328-73832347 Msa0374390:CDS 45.0%
TCTCAGCGTCTTATAAAGGC+AGG + chr3_1:73832707-73832726 None:intergenic 45.0%
TAGATGGTCACGTGGTATAG+AGG - chr3_1:73832728-73832747 Msa0374390:CDS 45.0%
AGATGGTCACGTGGTATAGA+GGG - chr3_1:73832729-73832748 Msa0374390:CDS 45.0%
TAGCTCGAGAGATTGATGAG+AGG - chr3_1:73832771-73832790 Msa0374390:CDS 45.0%
ATTATGTCGGAAGTGGCTGA+AGG - chr3_1:73832812-73832831 Msa0374390:CDS 45.0%
TGATAGCCTGGAACTGTTTC+TGG + chr3_1:73833067-73833086 None:intergenic 45.0%
GAAACAGTTCCAGGCTATCA+TGG - chr3_1:73833067-73833086 Msa0374390:CDS 45.0%
GGTGCACACAGTTCAACAAT+TGG - chr3_1:73833183-73833202 Msa0374390:CDS 45.0%
CACAGTTCAACAATTGGGTC+AGG - chr3_1:73833189-73833208 Msa0374390:CDS 45.0%
ATTTGAATGGGTGGCTCAGA+AGG - chr3_1:73833234-73833253 Msa0374390:CDS 45.0%
!! AATCCGACTTGGAGAGTAAG+GGG + chr3_1:73833300-73833319 None:intergenic 45.0%
!! CAATCCGACTTGGAGAGTAA+GGG + chr3_1:73833301-73833320 None:intergenic 45.0%
CTCAAAAGCTGCATGAGCTA+TGG - chr3_1:73833414-73833433 Msa0374390:CDS 45.0%
GCTATGGGAGAAACAAGATG+AGG - chr3_1:73833430-73833449 Msa0374390:CDS 45.0%
AGGAACAAAGGCGGAAAATC+AGG - chr3_1:73833450-73833469 Msa0374390:CDS 45.0%
GGAACAAAGGCGGAAAATCA+GGG - chr3_1:73833451-73833470 Msa0374390:CDS 45.0%
!!! GTGTTTTGAGGCTCCCATTT+CGG + chr3_1:73833525-73833544 None:intergenic 45.0%
CACGAGCATGACAAAGTTTC+AGG - chr3_1:73833542-73833561 Msa0374390:five_prime_UTR 45.0%
TTCGCCACTGGATGATCTAA+AGG - chr3_1:73833604-73833623 Msa0374390:five_prime_UTR 45.0%
TCCACCTTTAGATCATCCAG+TGG + chr3_1:73833611-73833630 None:intergenic 45.0%
TGATGAGAGGGCCAAACATA+AGG - chr3_1:73833658-73833677 Msa0374390:five_prime_UTR 45.0%
AATCGTCCATGTTCTCTACG+AGG + chr3_1:73833819-73833838 None:intergenic 45.0%
! GACTGTAGATTGGGTGTTAC+AGG + chr3_1:73833994-73834013 None:intergenic 45.0%
GTAACACCCAATCTACAGTC+AGG - chr3_1:73833994-73834013 Msa0374390:five_prime_UTR 45.0%
!! TGGATCGATTTGGAAGGAGG+GGG + chr3_1:73829301-73829320 None:intergenic 50.0%
!! GTGGATCGATTTGGAAGGAG+GGG + chr3_1:73829302-73829321 None:intergenic 50.0%
!! CGTGGATCGATTTGGAAGGA+GGG + chr3_1:73829303-73829322 None:intergenic 50.0%
!! TCGTGGATCGATTTGGAAGG+AGG + chr3_1:73829304-73829323 None:intergenic 50.0%
!! GGATCGTGGATCGATTTGGA+AGG + chr3_1:73829307-73829326 None:intergenic 50.0%
GGGTGAATAGAGATGGATCG+TGG + chr3_1:73829321-73829340 None:intergenic 50.0%
GGAAGCAGCATGGGAAAATG+TGG + chr3_1:73829453-73829472 None:intergenic 50.0%
GATGGCTGTTCAGTTCAGTG+AGG + chr3_1:73829503-73829522 None:intergenic 50.0%
CTCTGCAAAGAGTTACCACG+GGG + chr3_1:73829636-73829655 None:intergenic 50.0%
CGAGAAGGCAATGTGAGAAC+AGG + chr3_1:73829832-73829851 None:intergenic 50.0%
CTCACATTGCCTTCTCGTGA+AGG - chr3_1:73829835-73829854 Msa0374390:CDS 50.0%
! TTCAGGTTCGGATTCAGCCT+CGG + chr3_1:73830007-73830026 None:intergenic 50.0%
!! TCGGGTTGGTGTTCGTATTG+AGG + chr3_1:73830072-73830091 None:intergenic 50.0%
!! TGGACTGGTTCTCCTTATGG+TGG - chr3_1:73830264-73830283 Msa0374390:intron 50.0%
GTAGAAACTCTCGGTGGTGA+AGG + chr3_1:73830384-73830403 None:intergenic 50.0%
CACCACCGAGAGTTTCTACT+TGG - chr3_1:73830385-73830404 Msa0374390:intron 50.0%
TCCCAAGTAGAAACTCTCGG+TGG + chr3_1:73830390-73830409 None:intergenic 50.0%
GACGGAACAGGAAACTGTGA+AGG - chr3_1:73830557-73830576 Msa0374390:intron 50.0%
GGAACAGGAAACTGTGAAGG+AGG - chr3_1:73830560-73830579 Msa0374390:intron 50.0%
TGTGAAGGAGGTTCGTCATG+AGG - chr3_1:73830572-73830591 Msa0374390:intron 50.0%
GAAGAAAGTGGCAGAGGAAG+TGG - chr3_1:73830602-73830621 Msa0374390:intron 50.0%
!! GAAGGAAGTGCCATTGCAAC+AGG - chr3_1:73830683-73830702 Msa0374390:CDS 50.0%
GCAACAGGTGAGTAGTAGTG+AGG - chr3_1:73830698-73830717 Msa0374390:CDS 50.0%
AGGGAAGTTCCAAAACGGTG+CGG - chr3_1:73830718-73830737 Msa0374390:CDS 50.0%
GTGCGGTTTCATAGTAGCGA+AGG - chr3_1:73830735-73830754 Msa0374390:CDS 50.0%
CTCACCCCTTTCTTTCTAGG+AGG + chr3_1:73830825-73830844 None:intergenic 50.0%
TGAGGGTGATGAAGATGCGA+CGG - chr3_1:73830854-73830873 Msa0374390:CDS 50.0%
TGCGACGGTTACAACAGTAG+AGG - chr3_1:73830869-73830888 Msa0374390:CDS 50.0%
GGATAGGAAGGTGGCTTAGA+AGG + chr3_1:73831543-73831562 None:intergenic 50.0%
CACCTTCCTATCCTCCATCT+GGG - chr3_1:73831550-73831569 Msa0374390:intron 50.0%
AGCGTCTTATAAAGGCAGGC+AGG + chr3_1:73832703-73832722 None:intergenic 50.0%
GCTGAGAATAGATGGTCACG+TGG - chr3_1:73832720-73832739 Msa0374390:CDS 50.0%
!! GGAACTGTTTCTGGTGGCAT+TGG + chr3_1:73833058-73833077 None:intergenic 50.0%
ATGCCACCAGAAACAGTTCC+AGG - chr3_1:73833058-73833077 Msa0374390:CDS 50.0%
!! TAGCCTGGAACTGTTTCTGG+TGG + chr3_1:73833064-73833083 None:intergenic 50.0%
TTGCCCCTTACTCTCCAAGT+CGG - chr3_1:73833294-73833313 Msa0374390:CDS 50.0%
!! CCAATCCGACTTGGAGAGTA+AGG + chr3_1:73833302-73833321 None:intergenic 50.0%
CCTTACTCTCCAAGTCGGAT+TGG - chr3_1:73833299-73833318 Msa0374390:CDS 50.0%
! CAGGGCAGAGTATCTCACAA+AGG - chr3_1:73833469-73833488 Msa0374390:CDS 50.0%
!! TGATAGTGGTGTTTCGCCAC+TGG - chr3_1:73833592-73833611 Msa0374390:five_prime_UTR 50.0%
GCCACTGGATGATCTAAAGG+TGG - chr3_1:73833607-73833626 Msa0374390:five_prime_UTR 50.0%
TGCATCACGGACAAGCCTAA+TGG + chr3_1:73833687-73833706 None:intergenic 50.0%
AGAGGTGGTGAAAGCTCATG+AGG - chr3_1:73833769-73833788 Msa0374390:five_prime_UTR 50.0%
! GCTTTGGGTGTGTAAACGTC+AGG - chr3_1:73833945-73833964 Msa0374390:five_prime_UTR 50.0%
GGTGTGTAAACGTCAGGACA+TGG - chr3_1:73833951-73833970 Msa0374390:five_prime_UTR 50.0%
! GGCGAGAGCGTAACGTTGAT+CGG + chr3_1:73829686-73829705 None:intergenic 55.0%
GAGACATCGGAGAAGCTCTG+AGG - chr3_1:73829737-73829756 Msa0374390:CDS 55.0%
ACATGAACACCGAACACCCG+AGG - chr3_1:73829987-73830006 Msa0374390:CDS 55.0%
TCAGGTTCGGATTCAGCCTC+GGG + chr3_1:73830006-73830025 None:intergenic 55.0%
TCAAGAACCCGAGAGACACG+TGG - chr3_1:73830227-73830246 Msa0374390:intron 55.0%
AGATTCCGCCACGTGTCTCT+CGG + chr3_1:73830238-73830257 None:intergenic 55.0%
! ACGTGGCGGAATCTGGACAA+TGG - chr3_1:73830244-73830263 Msa0374390:intron 55.0%
GCGGAATCTGGACAATGGAC+TGG - chr3_1:73830249-73830268 Msa0374390:intron 55.0%
GAAACTCTCGGTGGTGAAGG+TGG + chr3_1:73830381-73830400 None:intergenic 55.0%
! GGTTAGGGTTAGCGTCGAGT+GGG - chr3_1:73830475-73830494 Msa0374390:intron 55.0%
CCAGATGGAGGATAGGAAGG+TGG + chr3_1:73831552-73831571 None:intergenic 55.0%
CCACCTTCCTATCCTCCATC+TGG - chr3_1:73831549-73831568 Msa0374390:intron 55.0%
! TGTATTGGTGGCCCAGATGG+AGG + chr3_1:73831564-73831583 None:intergenic 55.0%
AAGAGGGGTGGCAGATGCTA+TGG - chr3_1:73833382-73833401 Msa0374390:CDS 55.0%
AGAGGGGTGGCAGATGCTAT+GGG - chr3_1:73833383-73833402 Msa0374390:CDS 55.0%
CTGCAGCCTCGTAGAGAACA+TGG - chr3_1:73833810-73833829 Msa0374390:five_prime_UTR 55.0%
CACGGGGAACTCCTCCAGTT+TGG + chr3_1:73829620-73829639 None:intergenic 60.0%
CAAACTGGAGGAGTTCCCCG+TGG - chr3_1:73829618-73829637 Msa0374390:CDS 60.0%
CGGATTCAGCCTCGGGTGTT+CGG + chr3_1:73829999-73830018 None:intergenic 60.0%
AGAACCCGAGAGACACGTGG+CGG - chr3_1:73830230-73830249 Msa0374390:intron 60.0%
GATTCCGCCACGTGTCTCTC+GGG + chr3_1:73830237-73830256 None:intergenic 60.0%
! GAGAGACACGTGGCGGAATC+TGG - chr3_1:73830237-73830256 Msa0374390:intron 60.0%
! GGGTTAGGGTTAGCGTCGAG+TGG - chr3_1:73830474-73830493 Msa0374390:intron 60.0%
GGCCCAGATGGAGGATAGGA+AGG + chr3_1:73831555-73831574 None:intergenic 60.0%
TGGTGGCCCAGATGGAGGAT+AGG + chr3_1:73831559-73831578 None:intergenic 60.0%
TGCGGAGCTCCAATCCGACT+TGG + chr3_1:73833311-73833330 None:intergenic 60.0%
CTCGGTGGTGAAGGTGGAGC+CGG + chr3_1:73830375-73830394 None:intergenic 65.0%
CTGCGGGGGCTCCAAACTGG+AGG - chr3_1:73829606-73829625 Msa0374390:CDS 70.0%
GCAGGCGTAGAAGGTCCCGC+CGG + chr3_1:73830336-73830355 None:intergenic 70.0%
GGTGAAGGTGGAGCCGGAGC+CGG + chr3_1:73830369-73830388 None:intergenic 70.0%
GGGCTGCGGGGGCTCCAAAC+TGG - chr3_1:73829603-73829622 Msa0374390:CDS 75.0%
GGAGGCGGCGCAGGCGTAGA+AGG + chr3_1:73830345-73830364 None:intergenic 75.0%
GAAGGTGGAGCCGGAGCCGG+CGG + chr3_1:73830366-73830385 None:intergenic 75.0%
! TACGCCTGCGCCGCCTCCGC+CGG - chr3_1:73830347-73830366 Msa0374390:intron 80.0%
!!! TGCGCCGCCTCCGCCGGCTC+CGG - chr3_1:73830353-73830372 Msa0374390:intron 85.0%
! GGAGCCGGAGCCGGCGGAGG+CGG + chr3_1:73830360-73830379 None:intergenic 85.0%
! GGTGGAGCCGGAGCCGGCGG+AGG + chr3_1:73830363-73830382 None:intergenic 85.0%
! GGAGCCGGCGGAGGCGGCGC+AGG + chr3_1:73830354-73830373 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 73829020 73834085 73829020 ID=Msa0374390;Name=Msa0374390
chr3_1 mRNA 73829020 73834085 73829020 ID=Msa0374390-mRNA-1;Parent=Msa0374390;Name=Msa0374390-mRNA-1;_AED=0.05;_eAED=0.05;_QI=581|0|0.5|0.75|0.66|1|4|262|861
chr3_1 exon 73829020 73830077 73829020 ID=Msa0374390-mRNA-1:exon:16853;Parent=Msa0374390-mRNA-1
chr3_1 exon 73830666 73830937 73830666 ID=Msa0374390-mRNA-1:exon:16852;Parent=Msa0374390-mRNA-1
chr3_1 exon 73831789 73831829 73831789 ID=Msa0374390-mRNA-1:exon:16851;Parent=Msa0374390-mRNA-1
chr3_1 exon 73832028 73834085 73832028 ID=Msa0374390-mRNA-1:exon:16850;Parent=Msa0374390-mRNA-1
chr3_1 five_prime_UTR 73833505 73834085 73833505 ID=Msa0374390-mRNA-1:five_prime_utr;Parent=Msa0374390-mRNA-1
chr3_1 CDS 73832028 73833504 73832028 ID=Msa0374390-mRNA-1:cds;Parent=Msa0374390-mRNA-1
chr3_1 CDS 73831789 73831829 73831789 ID=Msa0374390-mRNA-1:cds;Parent=Msa0374390-mRNA-1
chr3_1 CDS 73830666 73830937 73830666 ID=Msa0374390-mRNA-1:cds;Parent=Msa0374390-mRNA-1
chr3_1 CDS 73829282 73830077 73829282 ID=Msa0374390-mRNA-1:cds;Parent=Msa0374390-mRNA-1
chr3_1 three_prime_UTR 73829020 73829281 73829020 ID=Msa0374390-mRNA-1:three_prime_utr;Parent=Msa0374390-mRNA-1
Gene Sequence

>Msa0374390

ATGGGCTGCGGGGGCTCCAAACTGGAGGAGTTCCCCGTGGTAACTCTTTGCAGAGAACGCAAAAACTTTCTCAAAAACGCTTCCGATCAACGTTACGCTCTCGCCGCCGCGCATCTCTCTTATTTACAGTCTCTCAGAGACATCGGAGAAGCTCTGAGGAGATTCTCCGATCAAGATCTTTTTCTTCCAACTGGTTCTACTCCTTCTTCTTCTTCTTCAATTTCTTCCCCTGTTCTCACATTGCCTTCTCGTGAAGGTAAATCCTCTAAAAATAGTAGTAACCACCATGATGATCATGATCTTGAGTACGATGATGATTCTCATTTGAATCTTTCTTCTGGATCGGAGTTGAGTTCACCTTCTTCAGATCATGTTCATCATCATCAACATGAACACCGAACACCCGAGGCTGAATCCGAACCTGAACGAGAACAAGAACAAGAAAGAGGATTTGAATATGGACACGAACCTCAATACGAACACCAACCCGAACCATCTTCTTCTTACGGGTATAATTATCCATATCCATATCCATATCAACAAGATTGGAATCAAAATCAACCAGGGGTTAATAGTTATGCTTATTATATGAAGAAATCTGCACCACGTGGAAAATCTGTGATCTATCAAGAACCCGAGAGACACGTGGCGGAATCTGGACAATGGACTGGTTCTCCTTATGGTGGTTATGGGTATAATGGTATGAATGGTAATAGTGGTTTTTTTTGTTTTCCGGCGGGACCTTCTACGCCTGCGCCGCCTCCGCCGGCTCCGGCTCCACCTTCACCACCGAGAGTTTCTACTTGGGATTTTCTTAACTTTTTTGAGAGTGTTGACAATAATAATTATTCTGGTTATGGAAGTTATGGATTAGGGTTAGGGTTAGCGTCGAGTGGGAGTAGTCCTGATTCAAAAGAAGTGAGGGAGAGAGAAGGGATTCCTGAATTAGAAGATGAGACGGAACAGGAAACTGTGAAGGAGGTTCGTCATGAGGAGAAGAAGAAGAAAGTGGCAGAGGAAGTGGAGAAAGAAAAGGAAGAGGTTGTTAAGGGTGGAGATTTTGGTGAAGGTACTTCGAATTCGAAGGAAGTGCCATTGCAACAGGTGAGTAGTAGTGAGGGAAGTTCCAAAACGGTGCGGTTTCATAGTAGCGAAGGTAGTGGTGATTCGATTTCTTCTAGTGAAAAATTGAGTCCTGATAATGTTGTTCCTAAAGGATCTCCTCCTAGAAAGAAAGGGGTGAGTTTTGAGATTGAGGGTGATGAAGATGCGACGGTTACAACAGTAGAGGTTGATGGTGAATCTTCTATGTTGAGTAGCTTAAGCACTTTGTCTCCACATGGAACTAGGGATCTAAAAGAGGTTGTTAGGGAAATTAGAGATGAGTTTGAGACTGCTTCTAATCATGGAAGAGAGGTTGCATTTCTTCTCGAGGTTTACAAACCACCTTATCAGTCAAGACTTGCTGCATTTAGAGTTTTGTGCTTCAAGAAAATGCAGTTGCAGTTTGATTTGAAGGATGAAGAGAGGTTAAGAGCTATTTATGAGAAGCAATGCAAGAGATTGAAAGCATTGGATAATCGAGGAGCCGAAGCTACTAAAATTGATGCTACTGAGTCATCAATACGAAAGTTGCTAACAAAGATAAACATTTGCATCAAAAGTGTTGAAACTATATCAGGGAGGATACATAAACTGAGGGATGAAGAATTAGAGCCTCAGCTTGCAGCATTAATTAATGGGTATGAAATTGCTTCACTTATTCACTACTATGTTAATATTCATCTCCTATTGATAAGAATGTGGAAATTCATGTTCCAATGCCACCAGAAACAGTTCCAGGCTATCATGGAGAGTAAAACTCAATCTCTCAAATTAAACACTGGTTTGCAAAGAGATGAAGGTTTGAAAGCCATTATAGAACTTGAAAGGGAGCTTCTGAATTGGTGCACACAGTTCAACAATTGGGTCAGGACTCAAAAATCTTATGTTGAAAATTTGAATGGGTGGCTCAGAAGGTGCCTTCTTGATGAACCTGAAGAAACAGATGATGGTGTTGCCCCTTACTCTCCAAGTCGGATTGGAGCTCCGCAAGCTTTCATTATCTGCAATGATTGGCAGCAAGCAATGAATAGAATTTCAGAAAGAGGGGTGGCAGATGCTATGGGCGAATTTGCTCAAAAGCTGCATGAGCTATGGGAGAAACAAGATGAGGAACAAAGGCGGAAAATCAGGGCAGAGTATCTCACAAAGGATTTTGAGAAACAACTTAGAGCTTTGCGCACCGAAATGGGAGCCTCAAAACACGAGCATGACAAAGTTTCAGGGAAGACTTCATTGTCGAAGTTCAATTCTGATAGTGGTGTTTCGCCACTGGATGATCTAAAGGTGGATTTAGATTCTATGAAGAAGAAATTGCATGATGAGAGGGCCAAACATAAGGAAGCCATTAGGCTTGTCCGTGATGCAGCTTCTAATAGTTTACAAACTGGTTTGGTTCCCATTTTTAAGACCTTAGAAAGTTTCACTTCAGAGGTGGTGAAAGCTCATGAGGAAGTCAGACTTCAAAATGCTGCAGCCTCGTAG
Protein sequence

>Msa0374390

MGCGGSKLEEFPVVTLCRERKNFLKNASDQRYALAAAHLSYLQSLRDIGEALRRFSDQDLFLPTGSTPSSSSSISSPVLTLPSREGKSSKNSSNHHDDHDLEYDDDSHLNLSSGSELSSPSSDHVHHHQHEHRTPEAESEPEREQEQERGFEYGHEPQYEHQPEPSSSYGYNYPYPYPYQQDWNQNQPGVNSYAYYMKKSAPRGKSVIYQEPERHVAESGQWTGSPYGGYGYNGMNGNSGFFCFPAGPSTPAPPPPAPAPPSPPRVSTWDFLNFFESVDNNNYSGYGSYGLGLGLASSGSSPDSKEVREREGIPELEDETEQETVKEVRHEEKKKKVAEEVEKEKEEVVKGGDFGEGTSNSKEVPLQQVSSSEGSSKTVRFHSSEGSGDSISSSEKLSPDNVVPKGSPPRKKGVSFEIEGDEDATVTTVEVDGESSMLSSLSTLSPHGTRDLKEVVREIRDEFETASNHGREVAFLLEVYKPPYQSRLAAFRVLCFKKMQLQFDLKDEERLRAIYEKQCKRLKALDNRGAEATKIDATESSIRKLLTKINICIKSVETISGRIHKLRDEELEPQLAALINGYEIASLIHYYVNIHLLLIRMWKFMFQCHQKQFQAIMESKTQSLKLNTGLQRDEGLKAIIELERELLNWCTQFNNWVRTQKSYVENLNGWLRRCLLDEPEETDDGVAPYSPSRIGAPQAFIICNDWQQAMNRISERGVADAMGEFAQKLHELWEKQDEEQRRKIRAEYLTKDFEKQLRALRTEMGASKHEHDKVSGKTSLSKFNSDSGVSPLDDLKVDLDSMKKKLHDERAKHKEAIRLVRDAASNSLQTGLVPIFKTLESFTSEVVKAHEEVRLQNAAAS*