Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515570 | XP_013461275.2 | 72.459 | 915 | 101 | 17 | 1 | 772 | 1 | 907 | 0.0 | 1035 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515570 | sp|Q9AQW1|REL2_ORYSJ | 25.607 | 453 | 243 | 9 | 391 | 764 | 322 | 759 | 2.00e-32 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515570 | A0A396IYF6 | 72.459 | 915 | 101 | 17 | 1 | 772 | 1 | 907 | 0.0 | 1035 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0216340 | Msa0515570 | 0.809350 | 1.976175e-50 | -8.615850e-47 |
| Msa0374310 | Msa0515570 | 0.854957 | 8.705368e-62 | -8.615850e-47 |
| Msa0374390 | Msa0515570 | 0.874773 | 5.195860e-68 | -8.615850e-47 |
| Msa0249850 | Msa0515570 | 0.811876 | 5.621647e-51 | -8.615850e-47 |
| Msa0515520 | Msa0515570 | 0.874586 | 6.015269e-68 | -8.615850e-47 |
| Msa0515570 | Msa0931400 | 0.882132 | 1.345424e-70 | -8.615850e-47 |
| Msa0515570 | Msa1165090 | 0.820133 | 8.056235e-53 | -8.615850e-47 |
| Msa0515570 | Msa1331300 | 0.820065 | 8.350316e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515570 | MtrunA17_Chr3g0124841 | 72.459 | 915 | 101 | 17 | 1 | 772 | 1 | 907 | 0.0 | 1035 |
| Msa0515570 | MtrunA17_Chr4g0052471 | 74.742 | 194 | 37 | 4 | 392 | 576 | 5 | 195 | 2.37e-75 | 242 |
| Msa0515570 | MtrunA17_Chr5g0448571 | 36.516 | 419 | 206 | 9 | 389 | 761 | 352 | 756 | 5.99e-67 | 236 |
| Msa0515570 | MtrunA17_Chr5g0448571 | 39.450 | 109 | 54 | 1 | 1 | 109 | 1 | 97 | 3.82e-13 | 73.2 |
| Msa0515570 | MtrunA17_Chr3g0130761 | 30.720 | 472 | 240 | 10 | 375 | 771 | 322 | 781 | 6.18e-52 | 194 |
| Msa0515570 | MtrunA17_Chr4g0072011 | 26.000 | 750 | 407 | 19 | 1 | 690 | 1 | 662 | 7.71e-50 | 187 |
| Msa0515570 | MtrunA17_Chr3g0143731 | 30.288 | 416 | 247 | 5 | 389 | 767 | 273 | 682 | 2.33e-44 | 170 |
| Msa0515570 | MtrunA17_Chr1g0211271 | 25.751 | 466 | 266 | 11 | 374 | 764 | 259 | 719 | 4.67e-35 | 142 |
| Msa0515570 | MtrunA17_Chr3g0118401 | 25.650 | 577 | 301 | 17 | 190 | 689 | 156 | 681 | 7.96e-35 | 142 |
| Msa0515570 | MtrunA17_Chr3g0118401 | 45.946 | 74 | 34 | 1 | 1 | 68 | 1 | 74 | 1.37e-11 | 68.2 |
| Msa0515570 | MtrunA17_Chr7g0250681 | 25.951 | 447 | 242 | 9 | 391 | 764 | 405 | 835 | 2.00e-32 | 135 |
| Msa0515570 | MtrunA17_Chr8g0335341 | 24.164 | 538 | 297 | 13 | 308 | 764 | 208 | 715 | 7.27e-30 | 126 |
| Msa0515570 | MtrunA17_Chr2g0298171 | 30.499 | 341 | 185 | 9 | 393 | 687 | 534 | 868 | 5.34e-29 | 124 |
| Msa0515570 | MtrunA17_Chr5g0440551 | 23.580 | 581 | 329 | 18 | 204 | 710 | 164 | 703 | 3.96e-28 | 121 |
| Msa0515570 | MtrunA17_Chr5g0440551 | 44.872 | 78 | 39 | 1 | 1 | 74 | 1 | 78 | 6.12e-12 | 69.3 |
| Msa0515570 | MtrunA17_Chr5g0405741 | 23.608 | 449 | 269 | 11 | 380 | 764 | 193 | 631 | 6.05e-28 | 120 |
| Msa0515570 | MtrunA17_Chr3g0139411 | 23.647 | 351 | 197 | 8 | 479 | 765 | 358 | 701 | 1.44e-18 | 90.5 |
| Msa0515570 | MtrunA17_Chr2g0331821 | 22.857 | 350 | 202 | 8 | 479 | 764 | 403 | 748 | 5.54e-18 | 89.0 |
| Msa0515570 | MtrunA17_Chr2g0303521 | 25.551 | 454 | 236 | 17 | 391 | 769 | 208 | 634 | 7.94e-17 | 84.7 |
| Msa0515570 | MtrunA17_Chr8g0382541 | 31.492 | 181 | 98 | 6 | 557 | 712 | 1 | 180 | 2.40e-14 | 73.6 |
| Msa0515570 | MtrunA17_Chr4g0004471 | 21.194 | 335 | 203 | 11 | 392 | 690 | 124 | 433 | 4.33e-14 | 75.9 |
| Msa0515570 | MtrunA17_Chr1g0208081 | 37.975 | 79 | 49 | 0 | 479 | 557 | 7 | 85 | 9.88e-13 | 65.5 |
| Msa0515570 | MtrunA17_Chr8g0382551 | 41.558 | 77 | 40 | 1 | 1 | 72 | 1 | 77 | 9.12e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515570 | AT1G21740.1 | 42.264 | 963 | 343 | 28 | 1 | 768 | 1 | 945 | 0.0 | 580 |
| Msa0515570 | AT1G77500.1 | 48.509 | 637 | 244 | 14 | 207 | 772 | 255 | 878 | 4.82e-162 | 492 |
| Msa0515570 | AT4G35240.4 | 32.623 | 610 | 304 | 14 | 206 | 764 | 274 | 827 | 9.80e-71 | 248 |
| Msa0515570 | AT4G35240.4 | 56.364 | 55 | 24 | 0 | 1 | 55 | 1 | 55 | 5.67e-12 | 70.1 |
| Msa0515570 | AT4G35240.3 | 32.623 | 610 | 304 | 14 | 206 | 764 | 274 | 827 | 9.80e-71 | 248 |
| Msa0515570 | AT4G35240.3 | 56.364 | 55 | 24 | 0 | 1 | 55 | 1 | 55 | 5.67e-12 | 70.1 |
| Msa0515570 | AT4G35240.2 | 32.623 | 610 | 304 | 14 | 206 | 764 | 274 | 827 | 1.02e-70 | 249 |
| Msa0515570 | AT4G35240.2 | 56.364 | 55 | 24 | 0 | 1 | 55 | 1 | 55 | 6.30e-12 | 69.7 |
| Msa0515570 | AT4G35240.1 | 32.623 | 610 | 304 | 14 | 206 | 764 | 274 | 827 | 1.02e-70 | 249 |
| Msa0515570 | AT4G35240.1 | 56.364 | 55 | 24 | 0 | 1 | 55 | 1 | 55 | 6.30e-12 | 69.7 |
| Msa0515570 | AT2G17110.1 | 36.077 | 413 | 205 | 9 | 395 | 761 | 313 | 712 | 9.98e-61 | 218 |
| Msa0515570 | AT2G17110.1 | 54.545 | 55 | 25 | 0 | 1 | 55 | 1 | 55 | 1.15e-11 | 68.9 |
| Msa0515570 | AT4G30130.3 | 26.954 | 742 | 389 | 25 | 1 | 690 | 1 | 641 | 1.12e-42 | 166 |
| Msa0515570 | AT4G30130.1 | 26.954 | 742 | 389 | 25 | 1 | 690 | 1 | 641 | 1.12e-42 | 166 |
| Msa0515570 | AT5G54480.1 | 28.125 | 384 | 208 | 10 | 433 | 764 | 348 | 715 | 2.54e-36 | 147 |
| Msa0515570 | AT4G30130.4 | 29.461 | 594 | 310 | 20 | 1 | 579 | 1 | 500 | 2.09e-34 | 139 |
| Msa0515570 | AT4G30130.2 | 29.461 | 594 | 310 | 20 | 1 | 579 | 1 | 500 | 2.09e-34 | 139 |
| Msa0515570 | AT3G51290.1 | 24.368 | 435 | 271 | 9 | 380 | 764 | 189 | 615 | 3.11e-32 | 133 |
| Msa0515570 | AT3G51290.3 | 23.583 | 441 | 273 | 8 | 380 | 764 | 189 | 621 | 2.21e-31 | 131 |
| Msa0515570 | AT3G51290.2 | 23.583 | 441 | 273 | 8 | 380 | 764 | 189 | 621 | 3.35e-31 | 131 |
| Msa0515570 | AT1G20530.1 | 28.049 | 410 | 230 | 11 | 392 | 766 | 232 | 611 | 2.02e-30 | 127 |
| Msa0515570 | AT2G19090.1 | 26.466 | 597 | 329 | 19 | 177 | 690 | 155 | 724 | 3.24e-30 | 128 |
| Msa0515570 | AT4G39790.1 | 31.330 | 233 | 136 | 3 | 479 | 687 | 374 | 606 | 3.32e-30 | 127 |
| Msa0515570 | AT1G02110.1 | 24.480 | 433 | 243 | 10 | 391 | 755 | 270 | 686 | 1.47e-29 | 125 |
| Msa0515570 | AT3G60320.1 | 23.061 | 477 | 274 | 12 | 363 | 764 | 330 | 788 | 4.05e-29 | 124 |
| Msa0515570 | AT2G27090.2 | 23.979 | 563 | 300 | 17 | 201 | 697 | 168 | 668 | 1.35e-28 | 122 |
| Msa0515570 | AT2G27090.2 | 45.946 | 74 | 34 | 1 | 1 | 68 | 1 | 74 | 1.32e-11 | 68.6 |
| Msa0515570 | AT2G27090.1 | 23.979 | 563 | 300 | 17 | 201 | 697 | 168 | 668 | 1.35e-28 | 122 |
| Msa0515570 | AT2G27090.1 | 45.946 | 74 | 34 | 1 | 1 | 68 | 1 | 74 | 1.32e-11 | 68.6 |
| Msa0515570 | AT5G25590.1 | 23.438 | 448 | 253 | 14 | 392 | 766 | 330 | 760 | 1.10e-19 | 94.7 |
| Msa0515570 | AT1G52320.1 | 22.811 | 434 | 237 | 13 | 393 | 750 | 328 | 739 | 9.16e-18 | 88.6 |
| Msa0515570 | AT1G52320.2 | 22.811 | 434 | 237 | 13 | 393 | 750 | 351 | 762 | 1.16e-17 | 88.2 |
| Msa0515570 | AT1G52320.5 | 22.811 | 434 | 237 | 13 | 393 | 750 | 351 | 762 | 1.16e-17 | 88.2 |
| Msa0515570 | AT1G52320.3 | 22.811 | 434 | 237 | 13 | 393 | 750 | 25 | 436 | 6.27e-17 | 84.7 |
| Msa0515570 | AT1G52320.4 | 22.811 | 434 | 237 | 13 | 393 | 750 | 25 | 436 | 6.27e-17 | 84.7 |
Find 215 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTCACCCCTTTCTTTCT+AGG | 0.194413 | 3_4:+66831633 | None:intergenic |
| TTCTTCTAAGACAATGAAAT+TGG | 0.220958 | 3_4:-66830872 | Msa0515570:CDS |
| TCTCATTTGAATCTTTCTTC+TGG | 0.225408 | 3_4:-66832537 | Msa0515570:CDS |
| CAGCTTGCAGCATTAATTAA+TGG | 0.228181 | 3_4:-66830091 | Msa0515570:CDS |
| GGTTCTCCTTATGGTGGTTA+TGG | 0.230280 | 3_4:-66832191 | Msa0515570:CDS |
| GTTGACAATAATAATTATTC+TGG | 0.253727 | 3_4:-66832026 | Msa0515570:CDS |
| AATAATAATTATTCTGGTTA+TGG | 0.263471 | 3_4:-66832020 | Msa0515570:CDS |
| TCAAGACTTGCTGCATTTAG+AGG | 0.270388 | 3_4:-66831403 | Msa0515570:intron |
| GGGATCTAAAAGAGGTTGTT+AGG | 0.275615 | 3_4:-66831509 | Msa0515570:CDS |
| TCCTGTTCTTGTTCTCGTTC+AGG | 0.275854 | 3_4:+66832435 | None:intergenic |
| ACTATGAAACCGCACCGTTT+TGG | 0.283793 | 3_4:+66831731 | None:intergenic |
| TCCGTCTCATCTTCTAATTC+AGG | 0.285195 | 3_4:+66831918 | None:intergenic |
| AAAAGTGTTGAAACTATATC+AGG | 0.292364 | 3_4:-66830151 | Msa0515570:CDS |
| GGTTATGGAAGTTATGGATT+AGG | 0.294831 | 3_4:-66832005 | Msa0515570:CDS |
| GGAGCCGGAGCCGGCGGAGG+CGG | 0.296226 | 3_4:+66832101 | None:intergenic |
| CCTAATGGCTTCCTTATGTT+TGG | 0.304816 | 3_4:+66828793 | None:intergenic |
| TATTCTGGTTATGGAAGTTA+TGG | 0.304828 | 3_4:-66832011 | Msa0515570:CDS |
| CCACCTTCCTATCCTCCATC+TGG | 0.318447 | 3_4:-66830910 | Msa0515570:CDS |
| TTTCTAGGAGGAGATCCTTT+AGG | 0.318934 | 3_4:+66831648 | None:intergenic |
| GTTATGGAAGTTATGGATTA+GGG | 0.320121 | 3_4:-66832004 | Msa0515570:CDS |
| TATTCTCAGCGTCTTATAAA+AGG | 0.327838 | 3_4:+66829752 | None:intergenic |
| AGGAACAAAGGCGGAAAATC+AGG | 0.327990 | 3_4:-66829011 | Msa0515570:CDS |
| GGAAGTTATGGATTAGGGTT+AGG | 0.329740 | 3_4:-66831999 | Msa0515570:CDS |
| GTTCTCCTTATGGTGGTTAT+GGG | 0.330786 | 3_4:-66832190 | Msa0515570:CDS |
| CAATGGACTGGTTCTCCTTA+TGG | 0.331408 | 3_4:-66832200 | Msa0515570:CDS |
| ACACCATCATCTGTTTCTTC+AGG | 0.331566 | 3_4:+66829189 | None:intergenic |
| CCTTTAGGAACAACATTATC+AGG | 0.332468 | 3_4:+66831663 | None:intergenic |
| AATGTAGATGAAAGGTTTAT+CGG | 0.346986 | 3_4:+66830805 | None:intergenic |
| TGCGCCGCCTCCGCCGGCTC+CGG | 0.347174 | 3_4:-66832105 | Msa0515570:CDS |
| AGCTTGCAGCATTAATTAAT+GGG | 0.348005 | 3_4:-66830090 | Msa0515570:CDS |
| GTTGTTAAGGGTGGAGATTT+TGG | 0.350423 | 3_4:-66831816 | Msa0515570:CDS |
| GAAGAAAGTGGCAGAGGAAG+TGG | 0.352265 | 3_4:-66831856 | Msa0515570:CDS |
| AGAAAAGGAAGAGGTTGTTA+AGG | 0.362522 | 3_4:-66831829 | Msa0515570:CDS |
| CGAGAGACACGTGCGGAATC+TGG | 0.364775 | 3_4:-66832224 | Msa0515570:CDS |
| GGAGCCGGCGGAGGCGGCGC+AGG | 0.371955 | 3_4:+66832107 | None:intergenic |
| TACGCCTGCGCCGCCTCCGC+CGG | 0.382792 | 3_4:-66832111 | Msa0515570:CDS |
| TATGGTGGTTATGGGTATAA+TGG | 0.383537 | 3_4:-66832182 | Msa0515570:CDS |
| CACCACCGAGAGTTTCTACT+TGG | 0.383628 | 3_4:-66832073 | Msa0515570:CDS |
| GGATAGGAAGGTGGCTTAGA+AGG | 0.384801 | 3_4:+66830919 | None:intergenic |
| CCGAACCATCTTCTTCTTAC+GGG | 0.385216 | 3_4:-66832371 | Msa0515570:intron |
| CACGGGGAACTCCTCCAGTT+TGG | 0.386880 | 3_4:+66832835 | None:intergenic |
| TTCTTGTTCTCGTTCAGGTT+CGG | 0.391928 | 3_4:+66832440 | None:intergenic |
| CAGATTCCGCACGTGTCTCT+CGG | 0.395171 | 3_4:+66832225 | None:intergenic |
| GAAATTATACAAGGAAGTTA+AGG | 0.398321 | 3_4:-66830758 | Msa0515570:intron |
| GGAGGCGGCGCAGGCGTAGA+AGG | 0.400533 | 3_4:+66832116 | None:intergenic |
| CGAGAAGGCAATGTGAGAAC+AGG | 0.400855 | 3_4:+66832627 | None:intergenic |
| CGGATTCAGCCTCGGGTGTT+CGG | 0.402108 | 3_4:+66832460 | None:intergenic |
| CCCGTAAGAAGAAGATGGTT+CGG | 0.403321 | 3_4:+66832371 | None:intergenic |
| CCCGAACCATCTTCTTCTTA+CGG | 0.406997 | 3_4:-66832372 | Msa0515570:CDS |
| GGTGGAGCCGGAGCCGGCGG+AGG | 0.407665 | 3_4:+66832098 | None:intergenic |
| CTTTCATTATCTGCAATGAT+TGG | 0.408806 | 3_4:-66829128 | Msa0515570:CDS |
| TAATAGTTTACAAACTGGTT+TGG | 0.416201 | 3_4:-66828750 | Msa0515570:CDS |
| CCAATCCGACTTGGAGAGTA+AGG | 0.417005 | 3_4:+66829162 | None:intergenic |
| CTTTGTCTCCACATGGAACT+AGG | 0.419464 | 3_4:-66831530 | Msa0515570:CDS |
| TTCAGGTTCGGATTCAGCCT+CGG | 0.423908 | 3_4:+66832452 | None:intergenic |
| GTCTTAGAAGAAAATTGTAT+TGG | 0.424155 | 3_4:+66830883 | None:intergenic |
| AAGAAGTGAGGGAGAGAGAA+GGG | 0.424841 | 3_4:-66831944 | Msa0515570:CDS |
| GGTGAAGGTGGAGCCGGAGC+CGG | 0.424911 | 3_4:+66832092 | None:intergenic |
| ATGAATAGAATTTCAGAAAG+AGG | 0.426192 | 3_4:-66829096 | Msa0515570:CDS |
| TTTGATATTAACTCTTTCTC+AGG | 0.426197 | 3_4:+66830829 | None:intergenic |
| TATAAGACGCTGAGAATAGA+TGG | 0.426830 | 3_4:-66829747 | Msa0515570:CDS |
| TATGGGTATAATGGTATGAA+TGG | 0.427326 | 3_4:-66832173 | Msa0515570:CDS |
| GAAGAAGAAGAAAGTGGCAG+AGG | 0.427934 | 3_4:-66831862 | Msa0515570:CDS |
| GGTGCACACAGTTCAACAAT+TGG | 0.428625 | 3_4:-66829278 | Msa0515570:intron |
| GAAGTTATGGATTAGGGTTA+GGG | 0.428805 | 3_4:-66831998 | Msa0515570:CDS |
| CTCTGAAGTGAAACTTTCTA+AGG | 0.429224 | 3_4:+66828712 | None:intergenic |
| TCTTATGTTGAAAATTTGAA+TGG | 0.431188 | 3_4:-66829240 | Msa0515570:CDS |
| TTTGAGACTGCTTCTAATCA+TGG | 0.432301 | 3_4:-66831471 | Msa0515570:CDS |
| TCGGGTTGGTGTTCGTATTG+AGG | 0.433025 | 3_4:+66832390 | None:intergenic |
| GAAGGAAGTGCCATTGCAAC+AGG | 0.435586 | 3_4:-66831775 | Msa0515570:CDS |
| CTCAAAAGCTGCATGAGCTA+TGG | 0.438860 | 3_4:-66829047 | Msa0515570:CDS |
| AAGAGGGGTGGCAGATGCTA+TGG | 0.442230 | 3_4:-66829079 | Msa0515570:CDS |
| TGTAAATTAACATGGGCTGC+GGG | 0.449614 | 3_4:-66832862 | None:intergenic |
| ACCTGAACGAGAACAAGAAC+AGG | 0.452553 | 3_4:-66832436 | Msa0515570:CDS |
| TTTGAATCTTTCTTCTGGAT+CGG | 0.458184 | 3_4:-66832532 | Msa0515570:CDS |
| TCAGGTTCGGATTCAGCCTC+GGG | 0.458879 | 3_4:+66832453 | None:intergenic |
| GGATCTCCTCCTAGAAAGAA+AGG | 0.460253 | 3_4:-66831642 | Msa0515570:CDS |
| CTCGGTGGTGAAGGTGGAGC+CGG | 0.465082 | 3_4:+66832086 | None:intergenic |
| CCGTAAGAAGAAGATGGTTC+GGG | 0.466321 | 3_4:+66832372 | None:intergenic |
| CCTGATAATGTTGTTCCTAA+AGG | 0.466850 | 3_4:-66831663 | Msa0515570:CDS |
| ATTAGAAGATGAGACGGAAC+AGG | 0.466915 | 3_4:-66831913 | Msa0515570:CDS |
| GAAAAGGAAGAGGTTGTTAA+GGG | 0.470149 | 3_4:-66831828 | Msa0515570:CDS |
| GCTTCTAATAGTTTACAAAC+TGG | 0.474058 | 3_4:-66828755 | Msa0515570:CDS |
| TGATAGTGGTGTTTCGCCAC+TGG | 0.474624 | 3_4:-66828870 | Msa0515570:intron |
| TGATGAGAGGGCCAAACATA+AGG | 0.481807 | 3_4:-66828804 | Msa0515570:CDS |
| AAAGAAGTGAGGGAGAGAGA+AGG | 0.482867 | 3_4:-66831945 | Msa0515570:CDS |
| TGCATCACGGACAAGCCTAA+TGG | 0.484621 | 3_4:+66828778 | None:intergenic |
| TTTCTTCAGGTTCATCAAGA+AGG | 0.487287 | 3_4:+66829202 | None:intergenic |
| GATAAACCTTTCATCTACAT+TGG | 0.488957 | 3_4:-66830803 | Msa0515570:CDS |
| AATTGTATTGGCGGCCCAGA+TGG | 0.491904 | 3_4:+66830895 | None:intergenic |
| TGAATAGAATTTCAGAAAGA+GGG | 0.501325 | 3_4:-66829095 | Msa0515570:CDS |
| AAGGAAGAGGTTGTTAAGGG+TGG | 0.503136 | 3_4:-66831825 | Msa0515570:CDS |
| GGTATGAATGGAGGTAATAG+TGG | 0.503648 | 3_4:-66832161 | Msa0515570:CDS |
| ATTTGAATGGGTGGCTCAGA+AGG | 0.504891 | 3_4:-66829227 | Msa0515570:CDS |
| TCAAAAGCTGCATGAGCTAT+GGG | 0.507138 | 3_4:-66829046 | Msa0515570:CDS |
| GAAGAAATTGAAGAAGAAGA+AGG | 0.507803 | 3_4:+66832650 | None:intergenic |
| AGAGGAAGTGGAGAAAGAAA+AGG | 0.507961 | 3_4:-66831844 | Msa0515570:CDS |
| CATTGGAGAAACTTTATGCA+TGG | 0.509906 | 3_4:-66830786 | Msa0515570:CDS |
| TGCGGAGCTCCAATCCGACT+TGG | 0.511426 | 3_4:+66829153 | None:intergenic |
| AGTGGAGAAAGAAAAGGAAG+AGG | 0.513148 | 3_4:-66831838 | Msa0515570:CDS |
| CCTTACTCTCCAAGTCGGAT+TGG | 0.513152 | 3_4:-66829162 | Msa0515570:CDS |
| GATCTCCTCCTAGAAAGAAA+GGG | 0.513989 | 3_4:-66831641 | Msa0515570:CDS |
| AGATTCCGCACGTGTCTCTC+GGG | 0.514121 | 3_4:+66832226 | None:intergenic |
| GTGCACACAGTTCAACAATT+GGG | 0.515126 | 3_4:-66829277 | Msa0515570:intron |
| TTAGAAGAAAATTGTATTGG+CGG | 0.515354 | 3_4:+66830886 | None:intergenic |
| CTTAGAAAGTTTCACTTCAG+AGG | 0.516214 | 3_4:-66828711 | Msa0515570:CDS |
| CCAAACATAAGGAAGCCATT+AGG | 0.516949 | 3_4:-66828793 | Msa0515570:CDS |
| CACAGTTCAACAATTGGGTC+AGG | 0.519909 | 3_4:-66829272 | Msa0515570:intron |
| GGATCTAAAAGAGGTTGTTA+GGG | 0.519957 | 3_4:-66831508 | Msa0515570:CDS |
| GGCGAGAGCGTAACGTTGAT+CGG | 0.521112 | 3_4:+66832769 | None:intergenic |
| CACCTTCCTATCCTCCATCT+GGG | 0.521126 | 3_4:-66830909 | Msa0515570:CDS |
| CTACTACTCACCTGTTGCAA+TGG | 0.521870 | 3_4:+66831765 | None:intergenic |
| GAACAAGAACAGGATTTGAA+TGG | 0.522029 | 3_4:-66832426 | Msa0515570:CDS |
| CTCACATTGCCTTCTCGTGA+AGG | 0.524220 | 3_4:-66832621 | Msa0515570:intron |
| GAAGGTGGAGCCGGAGCCGG+CGG | 0.524547 | 3_4:+66832095 | None:intergenic |
| CTTATGTTGAAAATTTGAAT+GGG | 0.525221 | 3_4:-66829239 | Msa0515570:CDS |
| ATGCAAGAGATTGAAAGCAT+TGG | 0.527869 | 3_4:-66830257 | Msa0515570:CDS |
| GTTTCTCCAATGTAGATGAA+AGG | 0.531561 | 3_4:+66830797 | None:intergenic |
| TTGTAAATTAACATGGGCTG+CGG | 0.536115 | 3_4:-66832863 | None:intergenic |
| GTTACAACAGTAGAGGTTGA+TGG | 0.539166 | 3_4:-66831582 | Msa0515570:CDS |
| TTCGCCACTGGATGATCTAA+AGG | 0.539779 | 3_4:-66828858 | Msa0515570:CDS |
| ATTGGAGAAACTTTATGCAT+GGG | 0.541586 | 3_4:-66830785 | Msa0515570:CDS |
| GTAGAAACTCTCGGTGGTGA+AGG | 0.541943 | 3_4:+66832077 | None:intergenic |
| CTCACCCCTTTCTTTCTAGG+AGG | 0.547699 | 3_4:+66831636 | None:intergenic |
| GCAGCAAGTCTTGACTGATA+AGG | 0.550165 | 3_4:+66831412 | None:intergenic |
| GAGGATTTACCTTCACGAGA+AGG | 0.553408 | 3_4:+66832612 | None:intergenic |
| TTTGTCTCCACATGGAACTA+GGG | 0.554562 | 3_4:-66831529 | Msa0515570:CDS |
| GGCCCAGATGGAGGATAGGA+AGG | 0.554949 | 3_4:+66830907 | None:intergenic |
| TCCTGAATTAGAAGATGAGA+CGG | 0.558744 | 3_4:-66831919 | Msa0515570:CDS |
| TTAATTAATGCTGCAAGCTG+AGG | 0.567648 | 3_4:+66830094 | None:intergenic |
| GAAGAAATTGCATGATGAGA+GGG | 0.568060 | 3_4:-66828816 | Msa0515570:CDS |
| TCCTGATTCAAAAGAAGTGA+GGG | 0.568796 | 3_4:-66831955 | Msa0515570:CDS |
| GAAACTCTCGGTGGTGAAGG+TGG | 0.570393 | 3_4:+66832080 | None:intergenic |
| CAACAGGTGAGTAGTAGTGA+GGG | 0.571312 | 3_4:-66831759 | Msa0515570:CDS |
| GAAGAAGGAGTAGAACCAGT+TGG | 0.571423 | 3_4:+66832665 | None:intergenic |
| CTCAGCGTCTTATAAAAGGC+AGG | 0.572824 | 3_4:+66829756 | None:intergenic |
| TTATACCCATAACCACCATA+AGG | 0.575087 | 3_4:+66832185 | None:intergenic |
| AGAGGGGTGGCAGATGCTAT+GGG | 0.579128 | 3_4:-66829078 | Msa0515570:CDS |
| TGGCGGCCCAGATGGAGGAT+AGG | 0.579421 | 3_4:+66830903 | None:intergenic |
| GGGTTAGGGTTAGCGTCGAG+TGG | 0.581567 | 3_4:-66831984 | Msa0515570:CDS |
| TTATACCCGTAAGAAGAAGA+TGG | 0.583571 | 3_4:+66832366 | None:intergenic |
| AATTGGCAAAAGCATACTGT+GGG | 0.583977 | 3_4:-66830855 | Msa0515570:CDS |
| TAAATTAACATGGGCTGCGG+GGG | 0.584717 | 3_4:-66832860 | None:intergenic |
| GCGGAATCTGGACAATGGAC+TGG | 0.587231 | 3_4:-66832212 | Msa0515570:CDS |
| GCGTCTTATAAAAGGCAGGC+AGG | 0.591145 | 3_4:+66829760 | None:intergenic |
| TGGAACTAGGGATCTAAAAG+AGG | 0.591949 | 3_4:-66831517 | Msa0515570:CDS |
| GGGTATAATGGTATGAATGG+AGG | 0.592051 | 3_4:-66832170 | Msa0515570:CDS |
| GTCCTGATTCAAAAGAAGTG+AGG | 0.595426 | 3_4:-66831956 | Msa0515570:CDS |
| TGCTTCTAATCATGGAAGAG+AGG | 0.596147 | 3_4:-66831463 | Msa0515570:CDS |
| TTCTCTGCAAAGAGTTACCA+CGG | 0.598360 | 3_4:+66832817 | None:intergenic |
| GTAAATTAACATGGGCTGCG+GGG | 0.598567 | 3_4:-66832861 | None:intergenic |
| TGAAGGTACTTCGAATTCGA+AGG | 0.599893 | 3_4:-66831793 | Msa0515570:CDS |
| TTTCATAGTAGCGAAGGTAG+TGG | 0.601039 | 3_4:-66831717 | Msa0515570:CDS |
| GCAAGTCTTGACTGATAAGG+TGG | 0.601503 | 3_4:+66831415 | None:intergenic |
| AGAAAGTTTCACTTCAGAGG+TGG | 0.603559 | 3_4:-66828708 | Msa0515570:CDS |
| GGAACAAAGGCGGAAAATCA+GGG | 0.603888 | 3_4:-66829010 | Msa0515570:CDS |
| ATGTTGAAAATTTGAATGGG+TGG | 0.604696 | 3_4:-66829236 | Msa0515570:CDS |
| AAAGTGTTGAAACTATATCA+GGG | 0.605560 | 3_4:-66830150 | Msa0515570:CDS |
| TTGCCCCTTACTCTCCAAGT+CGG | 0.608240 | 3_4:-66829167 | Msa0515570:CDS |
| TGTATTGGCGGCCCAGATGG+AGG | 0.609831 | 3_4:+66830898 | None:intergenic |
| GGTTAGGGTTAGCGTCGAGT+GGG | 0.610372 | 3_4:-66831983 | Msa0515570:CDS |
| TTACAGTCTCTCAGAGACAT+CGG | 0.611826 | 3_4:-66832728 | Msa0515570:CDS |
| GTGCGGTTTCATAGTAGCGA+AGG | 0.615348 | 3_4:-66831723 | Msa0515570:CDS |
| AAATCCCAAGTAGAAACTCT+CGG | 0.615723 | 3_4:+66832068 | None:intergenic |
| AGGGAGGATACATAAACTGA+GGG | 0.617129 | 3_4:-66830131 | Msa0515570:CDS |
| AGAGGTGGTGAAAGCTCATG+AGG | 0.617745 | 3_4:-66828693 | Msa0515570:CDS |
| GCCACTGGATGATCTAAAGG+TGG | 0.618305 | 3_4:-66828855 | Msa0515570:CDS |
| AGAAGAAATTGCATGATGAG+AGG | 0.619702 | 3_4:-66828817 | Msa0515570:CDS |
| AATCCGACTTGGAGAGTAAG+GGG | 0.620758 | 3_4:+66829164 | None:intergenic |
| CAATCCGACTTGGAGAGTAA+GGG | 0.621439 | 3_4:+66829163 | None:intergenic |
| TGAGGGTGATGAAGATGCGA+CGG | 0.622626 | 3_4:-66831604 | Msa0515570:CDS |
| TAGTGAGGGAAGTTCCAAAA+CGG | 0.622761 | 3_4:-66831745 | Msa0515570:CDS |
| AACTATTAGAAGCTGCATCA+CGG | 0.624613 | 3_4:+66828765 | None:intergenic |
| TTTAGATCCCTAGTTCCATG+TGG | 0.631482 | 3_4:+66831522 | None:intergenic |
| TCTCTGCAAAGAGTTACCAC+GGG | 0.632381 | 3_4:+66832818 | None:intergenic |
| TGGACTGGTTCTCCTTATGG+TGG | 0.633553 | 3_4:-66832197 | Msa0515570:CDS |
| ATCTCCTCCTAGAAAGAAAG+GGG | 0.635205 | 3_4:-66831640 | Msa0515570:CDS |
| ACCACCGAGAGTTTCTACTT+GGG | 0.635604 | 3_4:-66832072 | Msa0515570:CDS |
| GCAACAGGTGAGTAGTAGTG+AGG | 0.636074 | 3_4:-66831760 | Msa0515570:CDS |
| AACAAGATGAGGAACAAAGG+CGG | 0.639484 | 3_4:-66829020 | Msa0515570:CDS |
| TGATGAACATGATCTGAAGA+AGG | 0.639709 | 3_4:+66832498 | None:intergenic |
| GACGGAACAGGAAACTGTGA+AGG | 0.640183 | 3_4:-66831901 | Msa0515570:CDS |
| GAATAGAATTTCAGAAAGAG+GGG | 0.641585 | 3_4:-66829094 | Msa0515570:CDS |
| AAATTGGCAAAAGCATACTG+TGG | 0.643020 | 3_4:-66830856 | Msa0515570:CDS |
| CACGTGCGGAATCTGGACAA+TGG | 0.643222 | 3_4:-66832217 | Msa0515570:CDS |
| TTGAAAGCATTGGATAATCG+AGG | 0.645643 | 3_4:-66830247 | Msa0515570:CDS |
| CAGGGAGGATACATAAACTG+AGG | 0.649011 | 3_4:-66830132 | Msa0515570:CDS |
| ATGGGAAAAGAAATTATACA+AGG | 0.650876 | 3_4:-66830767 | Msa0515570:CDS |
| AAGAAGAAGATGGTTCGGGT+TGG | 0.651087 | 3_4:+66832376 | None:intergenic |
| GAACCTGAAGAAACAGATGA+TGG | 0.653790 | 3_4:-66829192 | Msa0515570:CDS |
| CCAGATGGAGGATAGGAAGG+TGG | 0.657358 | 3_4:+66830910 | None:intergenic |
| AGAAACAAGATGAGGAACAA+AGG | 0.658720 | 3_4:-66829023 | Msa0515570:CDS |
| GAGAAGGCAATGTGAGAACA+GGG | 0.661869 | 3_4:+66832628 | None:intergenic |
| TAGAATTTCAGAAAGAGGGG+TGG | 0.673438 | 3_4:-66829091 | Msa0515570:CDS |
| GGAACAGGAAACTGTGAAGG+AGG | 0.675573 | 3_4:-66831898 | Msa0515570:CDS |
| TTGCAGATAATGAAAGCTTG+CGG | 0.678429 | 3_4:+66829135 | None:intergenic |
| ACATGAACACCGAACACCCG+AGG | 0.679265 | 3_4:-66832469 | Msa0515570:CDS |
| GAGACATCGGAGAAGCTCTG+AGG | 0.681296 | 3_4:-66832715 | Msa0515570:CDS |
| TTAAGCACTTTGTCTCCACA+TGG | 0.682460 | 3_4:-66831537 | Msa0515570:CDS |
| TGCGACGGTTACAACAGTAG+AGG | 0.688026 | 3_4:-66831589 | Msa0515570:CDS |
| ACTGTTCTCAGGATGAAGAG+AGG | 0.689314 | 3_4:-66830303 | Msa0515570:intron |
| GCTATGGGAGAAACAAGATG+AGG | 0.701488 | 3_4:-66829031 | Msa0515570:CDS |
| GCAGGCGTAGAAGGTCCCGC+CGG | 0.701500 | 3_4:+66832125 | None:intergenic |
| AGGGAAGTTCCAAAACGGTG+CGG | 0.705993 | 3_4:-66831740 | Msa0515570:CDS |
| TCCACCTTTAGATCATCCAG+TGG | 0.717641 | 3_4:+66828854 | None:intergenic |
| TAAATAAGAAAGATGCGCGG+CGG | 0.741921 | 3_4:+66832748 | None:intergenic |
| CTCTGCAAAGAGTTACCACG+GGG | 0.744877 | 3_4:+66832819 | None:intergenic |
| GCTGAGAATAGATGGTCACG+TGG | 0.751274 | 3_4:-66829739 | Msa0515570:intron |
| AATCGTCCATGTTCTCTACG+AGG | 0.757312 | 3_4:+66828646 | None:intergenic |
| ATTGGCAAAAGCATACTGTG+GGG | 0.764086 | 3_4:-66830854 | Msa0515570:CDS |
| CTGTAAATAAGAAAGATGCG+CGG | 0.772683 | 3_4:+66832745 | None:intergenic |
| GTGTTGAAACTATATCAGGG+AGG | 0.772755 | 3_4:-66830147 | Msa0515570:CDS |
| CAAACTGGAGGAGTTCCCCG+TGG | 0.774000 | 3_4:-66832834 | Msa0515570:CDS |
| AAGAACCCGAGAGACACGTG+CGG | 0.789812 | 3_4:-66832231 | Msa0515570:CDS |
| TCCCAAGTAGAAACTCTCGG+TGG | 0.798985 | 3_4:+66832071 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTAGTAAATATTGTA+CGG | - | chr3_4:66831148-66831167 | Msa0515570:intron | 10.0% |
| !! | TATTAATAATGAAGATTTAA+GGG | + | chr3_4:66831893-66831912 | None:intergenic | 10.0% |
| !! | TTATTAATAATGAAGATTTA+AGG | + | chr3_4:66831894-66831913 | None:intergenic | 10.0% |
| !!! | TTAATAATTATCATCATTTT+TGG | - | chr3_4:66831907-66831926 | Msa0515570:CDS | 10.0% |
| !!! | AATAATAATTATTCTGGTTA+TGG | - | chr3_4:66829492-66829511 | Msa0515570:intron | 15.0% |
| !!! | TTTGAAATTAGTTAAATGTT+AGG | - | chr3_4:66830860-66830879 | Msa0515570:CDS | 15.0% |
| !! | TGACATGATATTAAAAAAAA+TGG | + | chr3_4:66831521-66831540 | None:intergenic | 15.0% |
| !! | GTTGACAATAATAATTATTC+TGG | - | chr3_4:66829486-66829505 | Msa0515570:intron | 20.0% |
| !!! | TTTCCTTTTTAGTTCTTTTT+TGG | - | chr3_4:66830143-66830162 | Msa0515570:CDS | 20.0% |
| !! | AATCCAAAAAAGAACTAAAA+AGG | + | chr3_4:66830149-66830168 | None:intergenic | 20.0% |
| !!! | TTTTAGTTCTTTTTTGGATT+TGG | - | chr3_4:66830149-66830168 | Msa0515570:CDS | 20.0% |
| !! | ATATATGTTGAACTTTATGT+GGG | - | chr3_4:66830408-66830427 | Msa0515570:intron | 20.0% |
| !! | ATGTAAATATTACTGTTTAC+AGG | - | chr3_4:66830508-66830527 | Msa0515570:intron | 20.0% |
| !!! | AAATTAGTTACTTTATGCAT+GGG | - | chr3_4:66830796-66830815 | Msa0515570:CDS | 20.0% |
| !! | AACAACATAAATGTATGAAA+GGG | + | chr3_4:66831017-66831036 | None:intergenic | 20.0% |
| !! | AAACAACATAAATGTATGAA+AGG | + | chr3_4:66831018-66831037 | None:intergenic | 20.0% |
| !! | ACAAATAAGAACAATTTGAA+AGG | + | chr3_4:66831176-66831195 | None:intergenic | 20.0% |
| !!! | ATTATCATCATTTTTGGTTT+TGG | - | chr3_4:66831913-66831932 | Msa0515570:CDS | 20.0% |
| !!! | TTATCATCATTTTTGGTTTT+GGG | - | chr3_4:66831914-66831933 | Msa0515570:CDS | 20.0% |
| !! | TCTTATGTTGAAAATTTGAA+TGG | - | chr3_4:66832272-66832291 | Msa0515570:intron | 20.0% |
| !! | CTTATGTTGAAAATTTGAAT+GGG | - | chr3_4:66832273-66832292 | Msa0515570:intron | 20.0% |
| ! | AACATTAAGCAATAGGATAA+GGG | - | chr3_4:66830256-66830275 | Msa0515570:CDS | 25.0% |
| ! | CATATATGTTGAACTTTATG+TGG | - | chr3_4:66830407-66830426 | Msa0515570:intron | 25.0% |
| ! | CTCTATACTATCATTTAATC+AGG | - | chr3_4:66830461-66830480 | Msa0515570:intron | 25.0% |
| ! | TTAGAAGAAAATTGTATTGG+CGG | + | chr3_4:66830629-66830648 | None:intergenic | 25.0% |
| ! | GTCTTAGAAGAAAATTGTAT+TGG | + | chr3_4:66830632-66830651 | None:intergenic | 25.0% |
| !!! | TTCTTCTAAGACAATGAAAT+TGG | - | chr3_4:66830640-66830659 | Msa0515570:intron | 25.0% |
| ! | TTTGATATTAACTCTTTCTC+AGG | + | chr3_4:66830686-66830705 | None:intergenic | 25.0% |
| ! | AATGTAGATGAAAGGTTTAT+CGG | + | chr3_4:66830710-66830729 | None:intergenic | 25.0% |
| ! | ATGGGAAAAGAAATTATACA+AGG | - | chr3_4:66830745-66830764 | Msa0515570:intron | 25.0% |
| ! | GAAATTATACAAGGAAGTTA+AGG | - | chr3_4:66830754-66830773 | Msa0515570:intron | 25.0% |
| !! | GAAATTAGTTACTTTATGCA+TGG | - | chr3_4:66830795-66830814 | Msa0515570:CDS | 25.0% |
| ! | ATGGGAAAAGAAATTATACA+AGG | - | chr3_4:66830745-66830764 | Msa0515570:intron | 25.0% |
| ! | TTCATGAAATTAGAAAACGT+TGG | - | chr3_4:66830901-66830920 | Msa0515570:CDS | 25.0% |
| ! | GTTTGAGAGATGATATAAAT+TGG | - | chr3_4:66831034-66831053 | Msa0515570:intron | 25.0% |
| !!! | AAAAGTGTTGAAACTATATC+AGG | - | chr3_4:66831361-66831380 | Msa0515570:intron | 25.0% |
| !!! | AAAGTGTTGAAACTATATCA+GGG | - | chr3_4:66831362-66831381 | Msa0515570:intron | 25.0% |
| ! | TTAATGAAACAGTTCAACTT+TGG | + | chr3_4:66831633-66831652 | None:intergenic | 25.0% |
| ! | CAAAATCAAACATTCCATTA+GGG | + | chr3_4:66831689-66831708 | None:intergenic | 25.0% |
| !!! | AAATTGTTGTTTTTCCTACA+CGG | - | chr3_4:66831943-66831962 | Msa0515570:CDS | 25.0% |
| ! | ATGAATAGAATTTCAGAAAG+AGG | - | chr3_4:66832416-66832435 | Msa0515570:CDS | 25.0% |
| ! | TGAATAGAATTTCAGAAAGA+GGG | - | chr3_4:66832417-66832436 | Msa0515570:CDS | 25.0% |
| ! | TAATAGTTTACAAACTGGTT+TGG | - | chr3_4:66832762-66832781 | Msa0515570:CDS | 25.0% |
| !!! | CTTTCTAAGGTCTTAAAAAT+GGG | + | chr3_4:66832790-66832809 | None:intergenic | 25.0% |
| !!! | ACTTTCTAAGGTCTTAAAAA+TGG | + | chr3_4:66832791-66832810 | None:intergenic | 25.0% |
| TGGAAGAAAAAGATCTTGAT+CGG | + | chr3_4:66828830-66828849 | None:intergenic | 30.0% | |
| GAAGAAATTGAAGAAGAAGA+AGG | + | chr3_4:66828865-66828884 | None:intergenic | 30.0% | |
| !!! | GTGGTTACTACTATTTTTAG+AGG | + | chr3_4:66828922-66828941 | None:intergenic | 30.0% |
| TCTCATTTGAATCTTTCTTC+TGG | - | chr3_4:66828975-66828994 | Msa0515570:intron | 30.0% | |
| TTTGAATCTTTCTTCTGGAT+CGG | - | chr3_4:66828980-66828999 | Msa0515570:intron | 30.0% | |
| TGTTGATATGGATATGGATA+TGG | + | chr3_4:66829176-66829195 | None:intergenic | 30.0% | |
| CAATCTTGTTGATATGGATA+TGG | + | chr3_4:66829182-66829201 | None:intergenic | 30.0% | |
| CATATCCATATCAACAAGAT+TGG | - | chr3_4:66829180-66829199 | Msa0515570:CDS | 30.0% | |
| TGATTCCAATCTTGTTGATA+TGG | + | chr3_4:66829188-66829207 | None:intergenic | 30.0% | |
| ATTGGAATCAAAATCAACCA+GGG | - | chr3_4:66829198-66829217 | Msa0515570:CDS | 30.0% | |
| ATAAGCATAACTATTAACCC+TGG | + | chr3_4:66829218-66829237 | None:intergenic | 30.0% | |
| TATGGGTATAATGGTATGAA+TGG | - | chr3_4:66829339-66829358 | Msa0515570:intron | 30.0% | |
| !!! | TAGTGGTTTTTTTGGTTTTC+CGG | - | chr3_4:66829368-66829387 | Msa0515570:intron | 30.0% |
| ! | TATTCTGGTTATGGAAGTTA+TGG | - | chr3_4:66829501-66829520 | Msa0515570:intron | 30.0% |
| ! | GTTATGGAAGTTATGGATTA+GGG | - | chr3_4:66829508-66829527 | Msa0515570:intron | 30.0% |
| AGATTGTGCTAGAATAATCA+TGG | - | chr3_4:66830189-66830208 | Msa0515570:CDS | 30.0% | |
| GATTGTGCTAGAATAATCAT+GGG | - | chr3_4:66830190-66830209 | Msa0515570:CDS | 30.0% | |
| ATGACTGATGTATGTTATGT+AGG | - | chr3_4:66830215-66830234 | Msa0515570:CDS | 30.0% | |
| TGCTTACAACATTAAGCAAT+AGG | - | chr3_4:66830249-66830268 | Msa0515570:CDS | 30.0% | |
| CAACATTAAGCAATAGGATA+AGG | - | chr3_4:66830255-66830274 | Msa0515570:CDS | 30.0% | |
| ACATTAAGCAATAGGATAAG+GGG | - | chr3_4:66830257-66830276 | Msa0515570:CDS | 30.0% | |
| ! | TTTTCTTGAAGCACAAAACT+GGG | + | chr3_4:66830328-66830347 | None:intergenic | 30.0% |
| ! | ATTTTCTTGAAGCACAAAAC+TGG | + | chr3_4:66830329-66830348 | None:intergenic | 30.0% |
| GATAAACCTTTCATCTACAT+TGG | - | chr3_4:66830709-66830728 | Msa0515570:intron | 30.0% | |
| ATTGGAGAAACTTTATGCAT+GGG | - | chr3_4:66830727-66830746 | Msa0515570:intron | 30.0% | |
| ATACACAGTAAATCAGCTAA+TGG | + | chr3_4:66830947-66830966 | None:intergenic | 30.0% | |
| ! | TTACTGTGTATCCTTCTTTT+AGG | - | chr3_4:66830956-66830975 | Msa0515570:intron | 30.0% |
| ! | TACTGTGTATCCTTCTTTTA+GGG | - | chr3_4:66830957-66830976 | Msa0515570:intron | 30.0% |
| ATGAAAGGGAAACTATGTAT+AGG | + | chr3_4:66831003-66831022 | None:intergenic | 30.0% | |
| ! | AAAAACAATGCTGATTATGC+AGG | + | chr3_4:66831104-66831123 | None:intergenic | 30.0% |
| TTGTATTTAACACTGTTCTC+AGG | - | chr3_4:66831198-66831217 | Msa0515570:intron | 30.0% | |
| !! | AGCATCAATTTTAGTAGCTT+CGG | + | chr3_4:66831293-66831312 | None:intergenic | 30.0% |
| AGCTTGCAGCATTAATTAAT+GGG | - | chr3_4:66831422-66831441 | Msa0515570:CDS | 30.0% | |
| AGTAGAAATTTCTCAGCTAA+GGG | - | chr3_4:66831495-66831514 | Msa0515570:CDS | 30.0% | |
| !! | ACTGTCAACTAAAGCATTTT+TGG | + | chr3_4:66831601-66831620 | None:intergenic | 30.0% |
| TATGAATCAGAAATCCCTAA+TGG | - | chr3_4:66831672-66831691 | Msa0515570:CDS | 30.0% | |
| GCAAAATCAAACATTCCATT+AGG | + | chr3_4:66831690-66831709 | None:intergenic | 30.0% | |
| TATCATCAATAGTGACAACA+AGG | + | chr3_4:66831723-66831742 | None:intergenic | 30.0% | |
| ! | GTCACTATTGATGATAATGT+AGG | - | chr3_4:66831727-66831746 | Msa0515570:CDS | 30.0% |
| TATTCTCAGCGTCTTATAAA+AGG | + | chr3_4:66831763-66831782 | None:intergenic | 30.0% | |
| CAATCTCTCAAATTAAACAC+TGG | - | chr3_4:66832153-66832172 | Msa0515570:CDS | 30.0% | |
| AAGCCATTATAGAACTTGAA+AGG | - | chr3_4:66832198-66832217 | Msa0515570:CDS | 30.0% | |
| AGCCATTATAGAACTTGAAA+GGG | - | chr3_4:66832199-66832218 | Msa0515570:CDS | 30.0% | |
| ATGTTGAAAATTTGAATGGG+TGG | - | chr3_4:66832276-66832295 | Msa0515570:intron | 30.0% | |
| CTTTCATTATCTGCAATGAT+TGG | - | chr3_4:66832384-66832403 | Msa0515570:CDS | 30.0% | |
| GAATAGAATTTCAGAAAGAG+GGG | - | chr3_4:66832418-66832437 | Msa0515570:CDS | 30.0% | |
| GCTTCTAATAGTTTACAAAC+TGG | - | chr3_4:66832757-66832776 | Msa0515570:CDS | 30.0% | |
| CTGTAAATAAGAAAGATGCG+CGG | + | chr3_4:66828770-66828789 | None:intergenic | 35.0% | |
| ! | CAAGATCTTTTTCTTCCAAC+TGG | - | chr3_4:66828832-66828851 | Msa0515570:CDS | 35.0% |
| ACTCAAGATCATGATCATCA+TGG | + | chr3_4:66828944-66828963 | None:intergenic | 35.0% | |
| TGATGAACATGATCTGAAGA+AGG | + | chr3_4:66829017-66829036 | None:intergenic | 35.0% | |
| GAACAAGAACAGGATTTGAA+TGG | - | chr3_4:66829086-66829105 | Msa0515570:CDS | 35.0% | |
| TTATACCCGTAAGAAGAAGA+TGG | + | chr3_4:66829149-66829168 | None:intergenic | 35.0% | |
| GATTGGAATCAAAATCAACC+AGG | - | chr3_4:66829197-66829216 | Msa0515570:CDS | 35.0% | |
| TTATACCCATAACCACCATA+AGG | + | chr3_4:66829330-66829349 | None:intergenic | 35.0% | |
| TATGGTGGTTATGGGTATAA+TGG | - | chr3_4:66829330-66829349 | Msa0515570:intron | 35.0% | |
| !!! | GGAGGTAATAGTGGTTTTTT+TGG | - | chr3_4:66829360-66829379 | Msa0515570:intron | 35.0% |
| AAATCCCAAGTAGAAACTCT+CGG | + | chr3_4:66829447-66829466 | None:intergenic | 35.0% | |
| GGTTATGGAAGTTATGGATT+AGG | - | chr3_4:66829507-66829526 | Msa0515570:intron | 35.0% | |
| !! | GAAGTTATGGATTAGGGTTA+GGG | - | chr3_4:66829514-66829533 | Msa0515570:intron | 35.0% |
| TCCTGATTCAAAAGAAGTGA+GGG | - | chr3_4:66829557-66829576 | Msa0515570:intron | 35.0% | |
| TCCTGAATTAGAAGATGAGA+CGG | - | chr3_4:66829593-66829612 | Msa0515570:intron | 35.0% | |
| TGAGAAGAAGAAGAAGAAAG+TGG | - | chr3_4:66829644-66829663 | Msa0515570:intron | 35.0% | |
| AGAAAAGGAAGAGGTTGTTA+AGG | - | chr3_4:66829683-66829702 | Msa0515570:intron | 35.0% | |
| GAAAAGGAAGAGGTTGTTAA+GGG | - | chr3_4:66829684-66829703 | Msa0515570:intron | 35.0% | |
| ! | CCTTTAGGAACAACATTATC+AGG | + | chr3_4:66829852-66829871 | None:intergenic | 35.0% |
| ! | CCTGATAATGTTGTTCCTAA+AGG | - | chr3_4:66829849-66829868 | Msa0515570:intron | 35.0% |
| GGATCTAAAAGAGGTTGTTA+GGG | - | chr3_4:66830004-66830023 | Msa0515570:intron | 35.0% | |
| ! | TTTGAGACTGCTTCTAATCA+TGG | - | chr3_4:66830041-66830060 | Msa0515570:intron | 35.0% |
| !! | TTTTGGATTTGGTTTCGTAG+TGG | - | chr3_4:66830160-66830179 | Msa0515570:CDS | 35.0% |
| GATGTATGTTATGTAGGAGA+AGG | - | chr3_4:66830221-66830240 | Msa0515570:CDS | 35.0% | |
| TTTCTTGAAGCACAAAACTG+GGG | + | chr3_4:66830327-66830346 | None:intergenic | 35.0% | |
| ! | AAATTGGCAAAAGCATACTG+TGG | - | chr3_4:66830656-66830675 | Msa0515570:intron | 35.0% |
| ! | AATTGGCAAAAGCATACTGT+GGG | - | chr3_4:66830657-66830676 | Msa0515570:intron | 35.0% |
| GTTTCTCCAATGTAGATGAA+AGG | + | chr3_4:66830718-66830737 | None:intergenic | 35.0% | |
| CATTGGAGAAACTTTATGCA+TGG | - | chr3_4:66830726-66830745 | Msa0515570:intron | 35.0% | |
| ! | ACTGTGTATCCTTCTTTTAG+GGG | - | chr3_4:66830958-66830977 | Msa0515570:intron | 35.0% |
| ATAGGAATTTCAGAAAGCCT+TGG | + | chr3_4:66830985-66831004 | None:intergenic | 35.0% | |
| ! | ATGCAAGAGATTGAAAGCAT+TGG | - | chr3_4:66831255-66831274 | Msa0515570:intron | 35.0% |
| !! | TTGAAAGCATTGGATAATCG+AGG | - | chr3_4:66831265-66831284 | Msa0515570:intron | 35.0% |
| TTAATTAATGCTGCAAGCTG+AGG | + | chr3_4:66831421-66831440 | None:intergenic | 35.0% | |
| CAGCTTGCAGCATTAATTAA+TGG | - | chr3_4:66831421-66831440 | Msa0515570:CDS | 35.0% | |
| GAGTAGAAATTTCTCAGCTA+AGG | - | chr3_4:66831494-66831513 | Msa0515570:CDS | 35.0% | |
| ! | GCTATCCAATTCCATTTTGT+TGG | - | chr3_4:66831550-66831569 | Msa0515570:CDS | 35.0% |
| TTGCACCAACAAAATGGAAT+TGG | + | chr3_4:66831558-66831577 | None:intergenic | 35.0% | |
| ! | GCTAATTTGCACCAACAAAA+TGG | + | chr3_4:66831564-66831583 | None:intergenic | 35.0% |
| !! | GTCAACTAAAGCATTTTTGG+AGG | + | chr3_4:66831598-66831617 | None:intergenic | 35.0% |
| TGAAACAGTTCAACTTTGGA+GGG | + | chr3_4:66831629-66831648 | None:intergenic | 35.0% | |
| ATGAAACAGTTCAACTTTGG+AGG | + | chr3_4:66831630-66831649 | None:intergenic | 35.0% | |
| GGGATTTCTGATTCATAGAT+AGG | + | chr3_4:66831669-66831688 | None:intergenic | 35.0% | |
| TATAAGACGCTGAGAATAGA+TGG | - | chr3_4:66831765-66831784 | Msa0515570:CDS | 35.0% | |
| TCAATCTCTCGAGCTATAAT+TGG | + | chr3_4:66831820-66831839 | None:intergenic | 35.0% | |
| GCGTTTATCTCACATTATGT+CGG | - | chr3_4:66831852-66831871 | Msa0515570:CDS | 35.0% | |
| !!! | CATCATTTTTGGTTTTGGGA+TGG | - | chr3_4:66831918-66831937 | Msa0515570:CDS | 35.0% |
| TCAGCAGATTGATAAGAATG+TGG | - | chr3_4:66832074-66832093 | Msa0515570:CDS | 35.0% | |
| !! | CTCCCTTTCAAGTTCTATAA+TGG | + | chr3_4:66832204-66832223 | None:intergenic | 35.0% |
| ! | TTTCTTCAGGTTCATCAAGA+AGG | + | chr3_4:66832313-66832332 | None:intergenic | 35.0% |
| TTGCAGATAATGAAAGCTTG+CGG | + | chr3_4:66832380-66832399 | None:intergenic | 35.0% | |
| AGAAACAAGATGAGGAACAA+AGG | - | chr3_4:66832489-66832508 | Msa0515570:CDS | 35.0% | |
| TCGAAGTTCAATTCTGATAG+TGG | - | chr3_4:66832628-66832647 | Msa0515570:CDS | 35.0% | |
| AGAAGAAATTGCATGATGAG+AGG | - | chr3_4:66832695-66832714 | Msa0515570:CDS | 35.0% | |
| GAAGAAATTGCATGATGAGA+GGG | - | chr3_4:66832696-66832715 | Msa0515570:CDS | 35.0% | |
| AACTATTAGAAGCTGCATCA+CGG | + | chr3_4:66832750-66832769 | None:intergenic | 35.0% | |
| !! | CTCTGAAGTGAAACTTTCTA+AGG | + | chr3_4:66832803-66832822 | None:intergenic | 35.0% |
| CTTAGAAAGTTTCACTTCAG+AGG | - | chr3_4:66832801-66832820 | Msa0515570:CDS | 35.0% | |
| TTCTCTGCAAAGAGTTACCA+CGG | + | chr3_4:66828698-66828717 | None:intergenic | 40.0% | |
| TAAATAAGAAAGATGCGCGG+CGG | + | chr3_4:66828767-66828786 | None:intergenic | 40.0% | |
| TTACAGTCTCTCAGAGACAT+CGG | - | chr3_4:66828784-66828803 | Msa0515570:CDS | 40.0% | |
| CAAGATCATGATCATCATGG+TGG | + | chr3_4:66828941-66828960 | None:intergenic | 40.0% | |
| ! | TTCTTGTTCTCGTTCAGGTT+CGG | + | chr3_4:66829075-66829094 | None:intergenic | 40.0% |
| ! | TAGATCACAGATTTTCCACG+TGG | + | chr3_4:66829259-66829278 | None:intergenic | 40.0% |
| GTTCTCCTTATGGTGGTTAT+GGG | - | chr3_4:66829322-66829341 | Msa0515570:intron | 40.0% | |
| GGGTATAATGGTATGAATGG+AGG | - | chr3_4:66829342-66829361 | Msa0515570:intron | 40.0% | |
| GGTATGAATGGAGGTAATAG+TGG | - | chr3_4:66829351-66829370 | Msa0515570:intron | 40.0% | |
| !!! | TGGTTTTTTTGGTTTTCCGG+CGG | - | chr3_4:66829371-66829390 | Msa0515570:intron | 40.0% |
| !! | GGAAGTTATGGATTAGGGTT+AGG | - | chr3_4:66829513-66829532 | Msa0515570:intron | 40.0% |
| GTCCTGATTCAAAAGAAGTG+AGG | - | chr3_4:66829556-66829575 | Msa0515570:intron | 40.0% | |
| ! | TCCCTCACTTCTTTTGAATC+AGG | + | chr3_4:66829561-66829580 | None:intergenic | 40.0% |
| TCCGTCTCATCTTCTAATTC+AGG | + | chr3_4:66829597-66829616 | None:intergenic | 40.0% | |
| ATTAGAAGATGAGACGGAAC+AGG | - | chr3_4:66829599-66829618 | Msa0515570:intron | 40.0% | |
| AGAGGAAGTGGAGAAAGAAA+AGG | - | chr3_4:66829668-66829687 | Msa0515570:intron | 40.0% | |
| AGTGGAGAAAGAAAAGGAAG+AGG | - | chr3_4:66829674-66829693 | Msa0515570:intron | 40.0% | |
| ! | GTTGTTAAGGGTGGAGATTT+TGG | - | chr3_4:66829696-66829715 | Msa0515570:intron | 40.0% |
| !! | TGAAGGTACTTCGAATTCGA+AGG | - | chr3_4:66829719-66829738 | Msa0515570:intron | 40.0% |
| TAGTGAGGGAAGTTCCAAAA+CGG | - | chr3_4:66829767-66829786 | Msa0515570:intron | 40.0% | |
| TTTCATAGTAGCGAAGGTAG+TGG | - | chr3_4:66829795-66829814 | Msa0515570:intron | 40.0% | |
| ! | TTTCTAGGAGGAGATCCTTT+AGG | + | chr3_4:66829867-66829886 | None:intergenic | 40.0% |
| GATCTCCTCCTAGAAAGAAA+GGG | - | chr3_4:66829871-66829890 | Msa0515570:intron | 40.0% | |
| ATCTCCTCCTAGAAAGAAAG+GGG | - | chr3_4:66829872-66829891 | Msa0515570:intron | 40.0% | |
| AAACTCACCCCTTTCTTTCT+AGG | + | chr3_4:66829882-66829901 | None:intergenic | 40.0% | |
| GTTACAACAGTAGAGGTTGA+TGG | - | chr3_4:66829930-66829949 | Msa0515570:intron | 40.0% | |
| TTAAGCACTTTGTCTCCACA+TGG | - | chr3_4:66829975-66829994 | Msa0515570:intron | 40.0% | |
| TTTGTCTCCACATGGAACTA+GGG | - | chr3_4:66829983-66830002 | Msa0515570:intron | 40.0% | |
| TTTAGATCCCTAGTTCCATG+TGG | + | chr3_4:66829993-66830012 | None:intergenic | 40.0% | |
| TGGAACTAGGGATCTAAAAG+AGG | - | chr3_4:66829995-66830014 | Msa0515570:intron | 40.0% | |
| GGGATCTAAAAGAGGTTGTT+AGG | - | chr3_4:66830003-66830022 | Msa0515570:intron | 40.0% | |
| TGCTTCTAATCATGGAAGAG+AGG | - | chr3_4:66830049-66830068 | Msa0515570:CDS | 40.0% | |
| !! | TCAAGACTTGCTGCATTTAG+AGG | - | chr3_4:66830109-66830128 | Msa0515570:CDS | 40.0% |
| !! | TGCTGCATTTAGAGGTATCA+AGG | - | chr3_4:66830117-66830136 | Msa0515570:CDS | 40.0% |
| AATAGGATAAGGGGCTTGTA+GGG | - | chr3_4:66830266-66830285 | Msa0515570:CDS | 40.0% | |
| !! | GCAGTTGCAGTTTGATTTGA+AGG | - | chr3_4:66830349-66830368 | Msa0515570:intron | 40.0% |
| ! | ATTGGCAAAAGCATACTGTG+GGG | - | chr3_4:66830658-66830677 | Msa0515570:intron | 40.0% |
| GTGTTGAAACTATATCAGGG+AGG | - | chr3_4:66831365-66831384 | Msa0515570:intron | 40.0% | |
| AGGGAGGATACATAAACTGA+GGG | - | chr3_4:66831381-66831400 | Msa0515570:intron | 40.0% | |
| GCTGAGAAATTTCTACTCAC+AGG | + | chr3_4:66831492-66831511 | None:intergenic | 40.0% | |
| ATCTCACATTATGTCGGAAG+TGG | - | chr3_4:66831858-66831877 | Msa0515570:CDS | 40.0% | |
| AGAAAAACACTCAACCGTGT+AGG | + | chr3_4:66831960-66831979 | None:intergenic | 40.0% | |
| ! | TACACGGTTGAGTGTTTTTC+TGG | - | chr3_4:66831959-66831978 | Msa0515570:CDS | 40.0% |
| !!! | GTTGAGTGTTTTTCTGGAGT+TGG | - | chr3_4:66831965-66831984 | Msa0515570:CDS | 40.0% |
| ! | TTTTACTCTCCATGATAGCC+TGG | + | chr3_4:66832131-66832150 | None:intergenic | 40.0% |
| !! | ACTGGTTTGCAAAGAGATGA+AGG | - | chr3_4:66832171-66832190 | Msa0515570:CDS | 40.0% |
| TTGAAAGGGAGCTTCTGAAT+TGG | - | chr3_4:66832213-66832232 | Msa0515570:CDS | 40.0% | |
| GTGCACACAGTTCAACAATT+GGG | - | chr3_4:66832235-66832254 | Msa0515570:intron | 40.0% | |
| GAACCTGAAGAAACAGATGA+TGG | - | chr3_4:66832320-66832339 | Msa0515570:intron | 40.0% | |
| ! | ACACCATCATCTGTTTCTTC+AGG | + | chr3_4:66832326-66832345 | None:intergenic | 40.0% |
| TAGAATTTCAGAAAGAGGGG+TGG | - | chr3_4:66832421-66832440 | Msa0515570:CDS | 40.0% | |
| TCAAAAGCTGCATGAGCTAT+GGG | - | chr3_4:66832466-66832485 | Msa0515570:CDS | 40.0% | |
| AACAAGATGAGGAACAAAGG+CGG | - | chr3_4:66832492-66832511 | Msa0515570:CDS | 40.0% | |
| ! | TTTGTCATGCTCGTGTTTTG+AGG | + | chr3_4:66832587-66832606 | None:intergenic | 40.0% |
| ACGAGCATGACAAAGTTTCA+GGG | - | chr3_4:66832593-66832612 | Msa0515570:intron | 40.0% | |
| CCTAATGGCTTCCTTATGTT+TGG | + | chr3_4:66832722-66832741 | None:intergenic | 40.0% | |
| CCAAACATAAGGAAGCCATT+AGG | - | chr3_4:66832719-66832738 | Msa0515570:CDS | 40.0% | |
| AGAAAGTTTCACTTCAGAGG+TGG | - | chr3_4:66832804-66832823 | Msa0515570:CDS | 40.0% | |
| TCTCTGCAAAGAGTTACCAC+GGG | + | chr3_4:66828697-66828716 | None:intergenic | 45.0% | |
| GAAGAAGGAGTAGAACCAGT+TGG | + | chr3_4:66828850-66828869 | None:intergenic | 45.0% | |
| GAGAAGGCAATGTGAGAACA+GGG | + | chr3_4:66828887-66828906 | None:intergenic | 45.0% | |
| GAGGATTTACCTTCACGAGA+AGG | + | chr3_4:66828903-66828922 | None:intergenic | 45.0% | |
| ACCTGAACGAGAACAAGAAC+AGG | - | chr3_4:66829076-66829095 | Msa0515570:CDS | 45.0% | |
| TCCTGTTCTTGTTCTCGTTC+AGG | + | chr3_4:66829080-66829099 | None:intergenic | 45.0% | |
| ! | AAGAAGAAGATGGTTCGGGT+TGG | + | chr3_4:66829139-66829158 | None:intergenic | 45.0% |
| CCGTAAGAAGAAGATGGTTC+GGG | + | chr3_4:66829143-66829162 | None:intergenic | 45.0% | |
| CCCGAACCATCTTCTTCTTA+CGG | - | chr3_4:66829140-66829159 | Msa0515570:CDS | 45.0% | |
| CCCGTAAGAAGAAGATGGTT+CGG | + | chr3_4:66829144-66829163 | None:intergenic | 45.0% | |
| CCGAACCATCTTCTTCTTAC+GGG | - | chr3_4:66829141-66829160 | Msa0515570:CDS | 45.0% | |
| ATGAAGAAATCTGCACCACG+TGG | - | chr3_4:66829241-66829260 | Msa0515570:CDS | 45.0% | |
| !! | CAATGGACTGGTTCTCCTTA+TGG | - | chr3_4:66829312-66829331 | Msa0515570:intron | 45.0% |
| GGTTCTCCTTATGGTGGTTA+TGG | - | chr3_4:66829321-66829340 | Msa0515570:intron | 45.0% | |
| !!! | GGTTTTTTTGGTTTTCCGGC+GGG | - | chr3_4:66829372-66829391 | Msa0515570:intron | 45.0% |
| ACCACCGAGAGTTTCTACTT+GGG | - | chr3_4:66829440-66829459 | Msa0515570:intron | 45.0% | |
| AAAGAAGTGAGGGAGAGAGA+AGG | - | chr3_4:66829567-66829586 | Msa0515570:intron | 45.0% | |
| AAGAAGTGAGGGAGAGAGAA+GGG | - | chr3_4:66829568-66829587 | Msa0515570:intron | 45.0% | |
| GAAGAAGAAGAAAGTGGCAG+AGG | - | chr3_4:66829650-66829669 | Msa0515570:intron | 45.0% | |
| AAGGAAGAGGTTGTTAAGGG+TGG | - | chr3_4:66829687-66829706 | Msa0515570:intron | 45.0% | |
| !! | AAGGGTGGAGATTTTGGTGA+AGG | - | chr3_4:66829702-66829721 | Msa0515570:intron | 45.0% |
| CTACTACTCACCTGTTGCAA+TGG | + | chr3_4:66829750-66829769 | None:intergenic | 45.0% | |
| CAACAGGTGAGTAGTAGTGA+GGG | - | chr3_4:66829753-66829772 | Msa0515570:CDS | 45.0% | |
| ! | ACTATGAAACCGCACCGTTT+TGG | + | chr3_4:66829784-66829803 | None:intergenic | 45.0% |
| GGATCTCCTCCTAGAAAGAA+AGG | - | chr3_4:66829870-66829889 | Msa0515570:intron | 45.0% | |
| !!! | AGGGGTGAGTTTTGAGATTG+AGG | - | chr3_4:66829890-66829909 | Msa0515570:intron | 45.0% |
| !!! | GGGGTGAGTTTTGAGATTGA+GGG | - | chr3_4:66829891-66829910 | Msa0515570:intron | 45.0% |
| CTTTGTCTCCACATGGAACT+AGG | - | chr3_4:66829982-66830001 | Msa0515570:intron | 45.0% | |
| GCAAGTCTTGACTGATAAGG+TGG | + | chr3_4:66830100-66830119 | None:intergenic | 45.0% | |
| GCAGCAAGTCTTGACTGATA+AGG | + | chr3_4:66830103-66830122 | None:intergenic | 45.0% | |
| CAATAGGATAAGGGGCTTGT+AGG | - | chr3_4:66830265-66830284 | Msa0515570:CDS | 45.0% | |
| !! | ATCCTTCTTTTAGGGGACCA+AGG | - | chr3_4:66830965-66830984 | Msa0515570:intron | 45.0% |
| ACTGTTCTCAGGATGAAGAG+AGG | - | chr3_4:66831209-66831228 | Msa0515570:intron | 45.0% | |
| CAGGGAGGATACATAAACTG+AGG | - | chr3_4:66831380-66831399 | Msa0515570:intron | 45.0% | |
| CTCAGCGTCTTATAAAAGGC+AGG | + | chr3_4:66831759-66831778 | None:intergenic | 45.0% | |
| TAGATGGTCACGTGGTATAG+AGG | - | chr3_4:66831781-66831800 | Msa0515570:CDS | 45.0% | |
| AGATGGTCACGTGGTATAGA+GGG | - | chr3_4:66831782-66831801 | Msa0515570:CDS | 45.0% | |
| TAGCTCGAGAGATTGATGAG+AGG | - | chr3_4:66831824-66831843 | Msa0515570:CDS | 45.0% | |
| ATTATGTCGGAAGTGGCTGA+AGG | - | chr3_4:66831865-66831884 | Msa0515570:CDS | 45.0% | |
| TGATAGCCTGGAACTGTTTC+TGG | + | chr3_4:66832119-66832138 | None:intergenic | 45.0% | |
| GAAACAGTTCCAGGCTATCA+TGG | - | chr3_4:66832119-66832138 | Msa0515570:CDS | 45.0% | |
| GGTGCACACAGTTCAACAAT+TGG | - | chr3_4:66832234-66832253 | Msa0515570:intron | 45.0% | |
| CACAGTTCAACAATTGGGTC+AGG | - | chr3_4:66832240-66832259 | Msa0515570:intron | 45.0% | |
| ATTTGAATGGGTGGCTCAGA+AGG | - | chr3_4:66832285-66832304 | Msa0515570:intron | 45.0% | |
| !! | AATCCGACTTGGAGAGTAAG+GGG | + | chr3_4:66832351-66832370 | None:intergenic | 45.0% |
| !! | CAATCCGACTTGGAGAGTAA+GGG | + | chr3_4:66832352-66832371 | None:intergenic | 45.0% |
| CTCAAAAGCTGCATGAGCTA+TGG | - | chr3_4:66832465-66832484 | Msa0515570:CDS | 45.0% | |
| GCTATGGGAGAAACAAGATG+AGG | - | chr3_4:66832481-66832500 | Msa0515570:CDS | 45.0% | |
| AGGAACAAAGGCGGAAAATC+AGG | - | chr3_4:66832501-66832520 | Msa0515570:CDS | 45.0% | |
| GGAACAAAGGCGGAAAATCA+GGG | - | chr3_4:66832502-66832521 | Msa0515570:CDS | 45.0% | |
| CACGAGCATGACAAAGTTTC+AGG | - | chr3_4:66832592-66832611 | Msa0515570:intron | 45.0% | |
| TTCGCCACTGGATGATCTAA+AGG | - | chr3_4:66832654-66832673 | Msa0515570:CDS | 45.0% | |
| TCCACCTTTAGATCATCCAG+TGG | + | chr3_4:66832661-66832680 | None:intergenic | 45.0% | |
| TGATGAGAGGGCCAAACATA+AGG | - | chr3_4:66832708-66832727 | Msa0515570:CDS | 45.0% | |
| CTCTGCAAAGAGTTACCACG+GGG | + | chr3_4:66828696-66828715 | None:intergenic | 50.0% | |
| CGAGAAGGCAATGTGAGAAC+AGG | + | chr3_4:66828888-66828907 | None:intergenic | 50.0% | |
| CTCACATTGCCTTCTCGTGA+AGG | - | chr3_4:66828891-66828910 | Msa0515570:intron | 50.0% | |
| ! | TTCAGGTTCGGATTCAGCCT+CGG | + | chr3_4:66829063-66829082 | None:intergenic | 50.0% |
| !! | TCGGGTTGGTGTTCGTATTG+AGG | + | chr3_4:66829125-66829144 | None:intergenic | 50.0% |
| !! | TGGACTGGTTCTCCTTATGG+TGG | - | chr3_4:66829315-66829334 | Msa0515570:intron | 50.0% |
| GTAGAAACTCTCGGTGGTGA+AGG | + | chr3_4:66829438-66829457 | None:intergenic | 50.0% | |
| CACCACCGAGAGTTTCTACT+TGG | - | chr3_4:66829439-66829458 | Msa0515570:intron | 50.0% | |
| TCCCAAGTAGAAACTCTCGG+TGG | + | chr3_4:66829444-66829463 | None:intergenic | 50.0% | |
| GACGGAACAGGAAACTGTGA+AGG | - | chr3_4:66829611-66829630 | Msa0515570:intron | 50.0% | |
| GGAACAGGAAACTGTGAAGG+AGG | - | chr3_4:66829614-66829633 | Msa0515570:intron | 50.0% | |
| GAAGAAAGTGGCAGAGGAAG+TGG | - | chr3_4:66829656-66829675 | Msa0515570:intron | 50.0% | |
| !! | GAAGGAAGTGCCATTGCAAC+AGG | - | chr3_4:66829737-66829756 | Msa0515570:intron | 50.0% |
| GCAACAGGTGAGTAGTAGTG+AGG | - | chr3_4:66829752-66829771 | Msa0515570:CDS | 50.0% | |
| AGGGAAGTTCCAAAACGGTG+CGG | - | chr3_4:66829772-66829791 | Msa0515570:intron | 50.0% | |
| GTGCGGTTTCATAGTAGCGA+AGG | - | chr3_4:66829789-66829808 | Msa0515570:intron | 50.0% | |
| CTCACCCCTTTCTTTCTAGG+AGG | + | chr3_4:66829879-66829898 | None:intergenic | 50.0% | |
| TGAGGGTGATGAAGATGCGA+CGG | - | chr3_4:66829908-66829927 | Msa0515570:intron | 50.0% | |
| TGCGACGGTTACAACAGTAG+AGG | - | chr3_4:66829923-66829942 | Msa0515570:intron | 50.0% | |
| GGATAGGAAGGTGGCTTAGA+AGG | + | chr3_4:66830596-66830615 | None:intergenic | 50.0% | |
| CACCTTCCTATCCTCCATCT+GGG | - | chr3_4:66830603-66830622 | Msa0515570:intron | 50.0% | |
| ! | AATTGTATTGGCGGCCCAGA+TGG | + | chr3_4:66830620-66830639 | None:intergenic | 50.0% |
| AGCCTTGGTCCCCTAAAAGA+AGG | + | chr3_4:66830970-66830989 | None:intergenic | 50.0% | |
| GCGTCTTATAAAAGGCAGGC+AGG | + | chr3_4:66831755-66831774 | None:intergenic | 50.0% | |
| GCTGAGAATAGATGGTCACG+TGG | - | chr3_4:66831773-66831792 | Msa0515570:CDS | 50.0% | |
| !! | GGAACTGTTTCTGGTGGCAT+TGG | + | chr3_4:66832110-66832129 | None:intergenic | 50.0% |
| ATGCCACCAGAAACAGTTCC+AGG | - | chr3_4:66832110-66832129 | Msa0515570:CDS | 50.0% | |
| !! | TAGCCTGGAACTGTTTCTGG+TGG | + | chr3_4:66832116-66832135 | None:intergenic | 50.0% |
| TTGCCCCTTACTCTCCAAGT+CGG | - | chr3_4:66832345-66832364 | Msa0515570:intron | 50.0% | |
| !! | CCAATCCGACTTGGAGAGTA+AGG | + | chr3_4:66832353-66832372 | None:intergenic | 50.0% |
| CCTTACTCTCCAAGTCGGAT+TGG | - | chr3_4:66832350-66832369 | Msa0515570:intron | 50.0% | |
| ! | CAGGGCAGAGTATCTCACAA+AGG | - | chr3_4:66832520-66832539 | Msa0515570:CDS | 50.0% |
| TTAGAGCTTTGCGCACCGAA+TGG | - | chr3_4:66832558-66832577 | Msa0515570:intron | 50.0% | |
| TAGAGCTTTGCGCACCGAAT+GGG | - | chr3_4:66832559-66832578 | Msa0515570:intron | 50.0% | |
| !!! | CGTGTTTTGAGGCTCCCATT+CGG | + | chr3_4:66832576-66832595 | None:intergenic | 50.0% |
| !! | TGATAGTGGTGTTTCGCCAC+TGG | - | chr3_4:66832642-66832661 | Msa0515570:CDS | 50.0% |
| GCCACTGGATGATCTAAAGG+TGG | - | chr3_4:66832657-66832676 | Msa0515570:CDS | 50.0% | |
| TGCATCACGGACAAGCCTAA+TGG | + | chr3_4:66832737-66832756 | None:intergenic | 50.0% | |
| AGAGGTGGTGAAAGCTCATG+AGG | - | chr3_4:66832819-66832838 | Msa0515570:CDS | 50.0% | |
| ! | GGCGAGAGCGTAACGTTGAT+CGG | + | chr3_4:66828746-66828765 | None:intergenic | 55.0% |
| GAGACATCGGAGAAGCTCTG+AGG | - | chr3_4:66828797-66828816 | Msa0515570:CDS | 55.0% | |
| ACATGAACACCGAACACCCG+AGG | - | chr3_4:66829043-66829062 | Msa0515570:CDS | 55.0% | |
| TCAGGTTCGGATTCAGCCTC+GGG | + | chr3_4:66829062-66829081 | None:intergenic | 55.0% | |
| AAGAACCCGAGAGACACGTG+CGG | - | chr3_4:66829281-66829300 | Msa0515570:intron | 55.0% | |
| AGATTCCGCACGTGTCTCTC+GGG | + | chr3_4:66829289-66829308 | None:intergenic | 55.0% | |
| CAGATTCCGCACGTGTCTCT+CGG | + | chr3_4:66829290-66829309 | None:intergenic | 55.0% | |
| CACGTGCGGAATCTGGACAA+TGG | - | chr3_4:66829295-66829314 | Msa0515570:intron | 55.0% | |
| GCGGAATCTGGACAATGGAC+TGG | - | chr3_4:66829300-66829319 | Msa0515570:intron | 55.0% | |
| GAAACTCTCGGTGGTGAAGG+TGG | + | chr3_4:66829435-66829454 | None:intergenic | 55.0% | |
| ! | GGTTAGGGTTAGCGTCGAGT+GGG | - | chr3_4:66829529-66829548 | Msa0515570:intron | 55.0% |
| CCAGATGGAGGATAGGAAGG+TGG | + | chr3_4:66830605-66830624 | None:intergenic | 55.0% | |
| CCACCTTCCTATCCTCCATC+TGG | - | chr3_4:66830602-66830621 | Msa0515570:intron | 55.0% | |
| AAGAGGGGTGGCAGATGCTA+TGG | - | chr3_4:66832433-66832452 | Msa0515570:CDS | 55.0% | |
| AGAGGGGTGGCAGATGCTAT+GGG | - | chr3_4:66832434-66832453 | Msa0515570:CDS | 55.0% | |
| CACGGGGAACTCCTCCAGTT+TGG | + | chr3_4:66828680-66828699 | None:intergenic | 60.0% | |
| CAAACTGGAGGAGTTCCCCG+TGG | - | chr3_4:66828678-66828697 | Msa0515570:CDS | 60.0% | |
| CGGATTCAGCCTCGGGTGTT+CGG | + | chr3_4:66829055-66829074 | None:intergenic | 60.0% | |
| CGAGAGACACGTGCGGAATC+TGG | - | chr3_4:66829288-66829307 | Msa0515570:intron | 60.0% | |
| ! | GGGTTAGGGTTAGCGTCGAG+TGG | - | chr3_4:66829528-66829547 | Msa0515570:intron | 60.0% |
| GGCCCAGATGGAGGATAGGA+AGG | + | chr3_4:66830608-66830627 | None:intergenic | 60.0% | |
| ! | TGTATTGGCGGCCCAGATGG+AGG | + | chr3_4:66830617-66830636 | None:intergenic | 60.0% |
| TGCGGAGCTCCAATCCGACT+TGG | + | chr3_4:66832362-66832381 | None:intergenic | 60.0% | |
| CTCGGTGGTGAAGGTGGAGC+CGG | + | chr3_4:66829429-66829448 | None:intergenic | 65.0% | |
| TGGCGGCCCAGATGGAGGAT+AGG | + | chr3_4:66830612-66830631 | None:intergenic | 65.0% | |
| CTGCGGGGGCTCCAAACTGG+AGG | - | chr3_4:66828666-66828685 | Msa0515570:CDS | 70.0% | |
| GCAGGCGTAGAAGGTCCCGC+CGG | + | chr3_4:66829390-66829409 | None:intergenic | 70.0% | |
| GGTGAAGGTGGAGCCGGAGC+CGG | + | chr3_4:66829423-66829442 | None:intergenic | 70.0% | |
| GGGCTGCGGGGGCTCCAAAC+TGG | - | chr3_4:66828663-66828682 | Msa0515570:CDS | 75.0% | |
| GGAGGCGGCGCAGGCGTAGA+AGG | + | chr3_4:66829399-66829418 | None:intergenic | 75.0% | |
| GAAGGTGGAGCCGGAGCCGG+CGG | + | chr3_4:66829420-66829439 | None:intergenic | 75.0% | |
| ! | TACGCCTGCGCCGCCTCCGC+CGG | - | chr3_4:66829401-66829420 | Msa0515570:intron | 80.0% |
| !!! | TGCGCCGCCTCCGCCGGCTC+CGG | - | chr3_4:66829407-66829426 | Msa0515570:intron | 85.0% |
| ! | GGAGCCGGAGCCGGCGGAGG+CGG | + | chr3_4:66829414-66829433 | None:intergenic | 85.0% |
| ! | GGTGGAGCCGGAGCCGGCGG+AGG | + | chr3_4:66829417-66829436 | None:intergenic | 85.0% |
| ! | GGAGCCGGCGGAGGCGGCGC+AGG | + | chr3_4:66829408-66829427 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 66828661 | 66832873 | 66828661 | ID=Msa0515570;Name=Msa0515570 |
| chr3_4 | mRNA | 66828661 | 66832873 | 66828661 | ID=Msa0515570-mRNA-1;Parent=Msa0515570;Name=Msa0515570-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.14|0|0.87|1|1|8|0|772 |
| chr3_4 | exon | 66832622 | 66832873 | 66832622 | ID=Msa0515570-mRNA-1:exon:17332;Parent=Msa0515570-mRNA-1 |
| chr3_4 | exon | 66832372 | 66832571 | 66832372 | ID=Msa0515570-mRNA-1:exon:17331;Parent=Msa0515570-mRNA-1 |
| chr3_4 | exon | 66831404 | 66832250 | 66831404 | ID=Msa0515570-mRNA-1:exon:17330;Parent=Msa0515570-mRNA-1 |
| chr3_4 | exon | 66830759 | 66830950 | 66830759 | ID=Msa0515570-mRNA-1:exon:17329;Parent=Msa0515570-mRNA-1 |
| chr3_4 | exon | 66830043 | 66830314 | 66830043 | ID=Msa0515570-mRNA-1:exon:17328;Parent=Msa0515570-mRNA-1 |
| chr3_4 | exon | 66829740 | 66829785 | 66829740 | ID=Msa0515570-mRNA-1:exon:17327;Parent=Msa0515570-mRNA-1 |
| chr3_4 | exon | 66829006 | 66829289 | 66829006 | ID=Msa0515570-mRNA-1:exon:17326;Parent=Msa0515570-mRNA-1 |
| chr3_4 | exon | 66828661 | 66828886 | 66828661 | ID=Msa0515570-mRNA-1:exon:17325;Parent=Msa0515570-mRNA-1 |
| chr3_4 | CDS | 66832622 | 66832873 | 66832622 | ID=Msa0515570-mRNA-1:cds;Parent=Msa0515570-mRNA-1 |
| chr3_4 | CDS | 66832372 | 66832571 | 66832372 | ID=Msa0515570-mRNA-1:cds;Parent=Msa0515570-mRNA-1 |
| chr3_4 | CDS | 66831404 | 66832250 | 66831404 | ID=Msa0515570-mRNA-1:cds;Parent=Msa0515570-mRNA-1 |
| chr3_4 | CDS | 66830759 | 66830950 | 66830759 | ID=Msa0515570-mRNA-1:cds;Parent=Msa0515570-mRNA-1 |
| chr3_4 | CDS | 66830043 | 66830314 | 66830043 | ID=Msa0515570-mRNA-1:cds;Parent=Msa0515570-mRNA-1 |
| chr3_4 | CDS | 66829740 | 66829785 | 66829740 | ID=Msa0515570-mRNA-1:cds;Parent=Msa0515570-mRNA-1 |
| chr3_4 | CDS | 66829006 | 66829289 | 66829006 | ID=Msa0515570-mRNA-1:cds;Parent=Msa0515570-mRNA-1 |
| chr3_4 | CDS | 66828661 | 66828886 | 66828661 | ID=Msa0515570-mRNA-1:cds;Parent=Msa0515570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
