Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375900 | XP_003602191.1 | 98.223 | 394 | 7 | 0 | 1 | 394 | 1 | 394 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375900 | sp|Q944H5|MTM1_ARATH | 65.534 | 412 | 118 | 4 | 5 | 394 | 4 | 413 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375900 | G7J698 | 98.223 | 394 | 7 | 0 | 1 | 394 | 1 | 394 | 0.0 | 800 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0372290 | Msa0375900 | 0.800125 | 1.668559e-48 | -8.615850e-47 |
| Msa0375900 | Msa0420530 | 0.814128 | 1.803704e-51 | -8.615850e-47 |
| Msa0375900 | Msa0466780 | 0.812958 | 3.262212e-51 | -8.615850e-47 |
| Msa0375900 | Msa1002780 | 0.968555 | 7.625485e-129 | -8.615850e-47 |
| Msa0375900 | Msa1407680 | 0.977436 | 8.921450e-144 | -8.615850e-47 |
| Msa0375900 | Msa1425840 | 0.809628 | 1.722456e-50 | -8.615850e-47 |
| Msa0375900 | Msa1449760 | 0.979345 | 9.160073e-148 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375900 | MtrunA17_Chr3g0126331 | 98.223 | 394 | 7 | 0 | 1 | 394 | 1 | 394 | 0.0 | 800 |
| Msa0375900 | MtrunA17_Chr7g0275411 | 65.385 | 364 | 101 | 5 | 31 | 394 | 4 | 342 | 1.09e-166 | 470 |
| Msa0375900 | MtrunA17_Chr7g0240341 | 25.000 | 264 | 174 | 4 | 134 | 392 | 75 | 319 | 1.43e-19 | 88.6 |
| Msa0375900 | MtrunA17_Chr4g0008061 | 25.145 | 346 | 189 | 11 | 46 | 386 | 17 | 297 | 6.35e-16 | 77.8 |
| Msa0375900 | MtrunA17_Chr5g0436041 | 25.352 | 284 | 182 | 6 | 110 | 387 | 62 | 321 | 1.29e-15 | 77.4 |
| Msa0375900 | MtrunA17_Chr4g0067231 | 23.269 | 361 | 201 | 11 | 46 | 383 | 14 | 321 | 1.64e-15 | 77.0 |
| Msa0375900 | MtrunA17_Chr7g0241521 | 25.000 | 340 | 191 | 10 | 32 | 370 | 6 | 282 | 2.93e-15 | 75.9 |
| Msa0375900 | MtrunA17_Chr3g0137941 | 25.097 | 259 | 169 | 5 | 128 | 384 | 155 | 390 | 4.56e-15 | 76.3 |
| Msa0375900 | MtrunA17_Chr1g0149111 | 24.809 | 262 | 168 | 6 | 130 | 387 | 174 | 410 | 1.72e-14 | 74.7 |
| Msa0375900 | MtrunA17_Chr3g0135861 | 26.007 | 273 | 179 | 8 | 123 | 384 | 66 | 326 | 1.90e-14 | 73.9 |
| Msa0375900 | MtrunA17_Chr8g0386871 | 26.761 | 284 | 175 | 8 | 106 | 384 | 329 | 584 | 6.35e-14 | 73.6 |
| Msa0375900 | MtrunA17_Chr2g0296061 | 23.596 | 356 | 202 | 12 | 46 | 382 | 15 | 319 | 1.07e-13 | 71.6 |
| Msa0375900 | MtrunA17_Chr4g0063561 | 24.809 | 262 | 165 | 8 | 128 | 384 | 157 | 391 | 3.16e-13 | 70.5 |
| Msa0375900 | MtrunA17_Chr6g0463351 | 25.301 | 249 | 151 | 8 | 125 | 366 | 100 | 320 | 2.43e-12 | 67.8 |
| Msa0375900 | MtrunA17_Chr6g0488081 | 25.632 | 277 | 168 | 10 | 123 | 384 | 50 | 303 | 7.16e-12 | 65.9 |
| Msa0375900 | MtrunA17_Chr8g0385571 | 23.462 | 260 | 176 | 7 | 132 | 388 | 264 | 503 | 2.11e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375900 | AT4G27940.1 | 65.534 | 412 | 118 | 4 | 5 | 394 | 4 | 413 | 0.0 | 541 |
| Msa0375900 | AT2G46320.1 | 62.772 | 368 | 118 | 7 | 29 | 391 | 8 | 361 | 7.34e-147 | 421 |
| Msa0375900 | AT2G46320.3 | 68.872 | 257 | 69 | 4 | 138 | 391 | 14 | 262 | 1.12e-113 | 333 |
| Msa0375900 | AT2G46320.2 | 68.872 | 257 | 69 | 4 | 138 | 391 | 14 | 262 | 1.12e-113 | 333 |
| Msa0375900 | AT2G46320.5 | 68.872 | 257 | 69 | 4 | 138 | 391 | 14 | 262 | 1.12e-113 | 333 |
| Msa0375900 | AT2G46320.4 | 68.837 | 215 | 58 | 3 | 138 | 351 | 14 | 220 | 3.08e-91 | 274 |
| Msa0375900 | AT4G26180.1 | 29.856 | 278 | 168 | 9 | 121 | 388 | 50 | 310 | 2.01e-19 | 89.0 |
| Msa0375900 | AT3G55640.1 | 26.667 | 270 | 173 | 6 | 122 | 385 | 73 | 323 | 4.95e-17 | 82.0 |
| Msa0375900 | AT3G55640.4 | 26.667 | 270 | 173 | 6 | 122 | 385 | 73 | 323 | 4.95e-17 | 82.0 |
| Msa0375900 | AT4G26180.2 | 30.159 | 252 | 149 | 9 | 121 | 362 | 50 | 284 | 2.68e-16 | 79.3 |
| Msa0375900 | AT3G53940.1 | 25.660 | 265 | 156 | 6 | 134 | 384 | 120 | 357 | 1.09e-15 | 78.2 |
| Msa0375900 | AT2G37890.1 | 24.904 | 261 | 165 | 5 | 133 | 384 | 91 | 329 | 2.41e-15 | 77.0 |
| Msa0375900 | AT4G11440.1 | 28.409 | 264 | 149 | 8 | 135 | 388 | 371 | 604 | 5.33e-13 | 70.9 |
| Msa0375900 | AT4G11440.2 | 28.409 | 264 | 149 | 8 | 135 | 388 | 371 | 604 | 5.33e-13 | 70.9 |
| Msa0375900 | AT1G14560.1 | 24.908 | 273 | 181 | 7 | 123 | 384 | 58 | 317 | 7.10e-13 | 69.7 |
| Msa0375900 | AT5G46800.2 | 27.857 | 280 | 175 | 8 | 118 | 388 | 39 | 300 | 7.28e-13 | 69.3 |
| Msa0375900 | AT5G46800.3 | 27.857 | 280 | 175 | 8 | 118 | 388 | 39 | 300 | 7.28e-13 | 69.3 |
| Msa0375900 | AT5G46800.1 | 27.857 | 280 | 175 | 8 | 118 | 388 | 39 | 300 | 7.28e-13 | 69.3 |
| Msa0375900 | AT5G48970.1 | 23.641 | 368 | 212 | 11 | 35 | 381 | 9 | 328 | 8.23e-13 | 69.3 |
| Msa0375900 | AT4G32400.1 | 23.137 | 255 | 175 | 4 | 130 | 384 | 149 | 382 | 1.62e-12 | 68.9 |
| Msa0375900 | AT5G58970.1 | 24.427 | 262 | 175 | 7 | 124 | 384 | 56 | 295 | 2.89e-12 | 67.4 |
| Msa0375900 | AT5G51050.1 | 25.681 | 257 | 168 | 8 | 134 | 388 | 261 | 496 | 3.03e-12 | 68.6 |
| Msa0375900 | AT3G54110.1 | 23.692 | 325 | 185 | 9 | 47 | 370 | 18 | 280 | 8.41e-12 | 66.2 |
| Msa0375900 | AT5G56450.1 | 22.180 | 266 | 189 | 5 | 124 | 388 | 78 | 326 | 9.37e-12 | 66.2 |
| Msa0375900 | AT3G21390.1 | 23.181 | 371 | 209 | 13 | 36 | 382 | 7 | 325 | 1.05e-11 | 65.9 |
| Msa0375900 | AT3G21390.2 | 23.181 | 371 | 209 | 13 | 36 | 382 | 29 | 347 | 1.46e-11 | 65.9 |
| Msa0375900 | AT3G55640.2 | 31.111 | 135 | 85 | 3 | 254 | 384 | 93 | 223 | 3.71e-11 | 63.5 |
| Msa0375900 | AT3G55640.3 | 31.111 | 135 | 85 | 3 | 254 | 384 | 93 | 223 | 3.71e-11 | 63.5 |
| Msa0375900 | AT5G15640.1 | 24.206 | 252 | 163 | 7 | 126 | 365 | 62 | 297 | 5.38e-11 | 63.9 |
| Msa0375900 | AT5G15640.2 | 24.206 | 252 | 163 | 7 | 126 | 365 | 55 | 290 | 7.75e-11 | 63.2 |
Find 135 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTAGGATTATTATGATTT+TGG | 0.113330 | 3_1:-75830038 | None:intergenic |
| TCATCAAATAATGACAAATT+AGG | 0.143139 | 3_1:+75830060 | Msa0375900:CDS |
| TTGTCATTATTTGATGATTT+AGG | 0.214682 | 3_1:-75830054 | None:intergenic |
| CGGAAGCCATCCATGGGTTT+TGG | 0.219669 | 3_1:-75829990 | None:intergenic |
| ATGTTGTTTGCCGGTGATTT+AGG | 0.221266 | 3_1:-75834162 | None:intergenic |
| CACGATGACGATGACTAAAT+TGG | 0.222931 | 3_1:-75829933 | None:intergenic |
| ATAGGACAACCTCCTAATTT+AGG | 0.230238 | 3_1:+75834352 | Msa0375900:three_prime_UTR |
| GTAACAAAATTGACCTCTTT+TGG | 0.248962 | 3_1:-75834407 | None:intergenic |
| TAGAAGAAAACTTCTTAGTT+TGG | 0.301366 | 3_1:+75833302 | Msa0375900:CDS |
| ATTAGGAGGTTGTCCTATAC+TGG | 0.323443 | 3_1:-75834347 | None:intergenic |
| GTCATGTTTCGGTCCAAATA+TGG | 0.324704 | 3_1:+75830432 | Msa0375900:CDS |
| TGTTGCAGTTGGAGCACTTT+TGG | 0.326444 | 3_1:-75831630 | None:intergenic |
| TGGTTCGTTGGCACGCTCAC+TGG | 0.333788 | 3_1:+75831673 | Msa0375900:CDS |
| ATGAATCAACGTTCATGAAT+AGG | 0.356954 | 3_1:+75834310 | Msa0375900:three_prime_UTR |
| CATCAAATAATGACAAATTA+GGG | 0.361045 | 3_1:+75830061 | Msa0375900:CDS |
| TGTTGTTTGCCGGTGATTTA+GGG | 0.370918 | 3_1:-75834161 | None:intergenic |
| GCCGGTATATTGAGTGTTCT+TGG | 0.376648 | 3_1:+75833339 | Msa0375900:CDS |
| TACCATTCTCTGCGATTTGT+TGG | 0.379271 | 3_1:+75833175 | Msa0375900:CDS |
| CGAGTTCTGGCAAGTTCAAT+AGG | 0.383953 | 3_1:-75831713 | None:intergenic |
| TATTTCAGGAAGGCTTTACT+AGG | 0.389389 | 3_1:+75831398 | Msa0375900:intron |
| ACCAACTCGCGGACCAAAAC+CGG | 0.390804 | 3_1:-75834083 | None:intergenic |
| TCCTTTGTACCGAAAACAAT+CGG | 0.399803 | 3_1:-75831222 | None:intergenic |
| GAGAAAGGCGGCGCCGGCGG+CGG | 0.401440 | 3_1:-75830103 | None:intergenic |
| AGAAAACTTCTTAGTTTGGT+TGG | 0.405793 | 3_1:+75833306 | Msa0375900:CDS |
| TGCAACACCATATGTACCTT+TGG | 0.413844 | 3_1:+75831646 | Msa0375900:CDS |
| GGCGGAGAGAAAGGCGGCGC+CGG | 0.414062 | 3_1:-75830109 | None:intergenic |
| TTTATTCAAAATTTGCTCTT+GGG | 0.416397 | 3_1:-75834443 | None:intergenic |
| GGAGAGAAAGGCGGCGCCGG+CGG | 0.416947 | 3_1:-75830106 | None:intergenic |
| CTGGTCATGATGTTGTTTGC+CGG | 0.426433 | 3_1:-75834171 | None:intergenic |
| GCTATGATATATTCCGCAAC+TGG | 0.429911 | 3_1:+75831591 | Msa0375900:CDS |
| GAGGGGCACAAATGCTGGTC+TGG | 0.434365 | 3_1:+75831426 | Msa0375900:CDS |
| CTCAGAGATGGAGGCTTGAA+AGG | 0.435489 | 3_1:+75834052 | Msa0375900:intron |
| GGTCCGCGAGTTGGTCGAGC+TGG | 0.437073 | 3_1:+75834091 | Msa0375900:CDS |
| AGGAAGGCTTTACTAGGCTA+TGG | 0.438594 | 3_1:+75831404 | Msa0375900:intron |
| TATTTGTAAAATTATACAAC+AGG | 0.446386 | 3_1:+75831256 | Msa0375900:CDS |
| CTATGGAGGGGCACAAATGC+TGG | 0.448613 | 3_1:+75831421 | Msa0375900:CDS |
| ATCAGTAGAATGTCATGTTT+CGG | 0.450546 | 3_1:+75830421 | Msa0375900:CDS |
| GCTTTGTTGCTGAGAACCTC+TGG | 0.450589 | 3_1:+75834231 | Msa0375900:three_prime_UTR |
| GACAATGACGGCGGAGAGAA+AGG | 0.462597 | 3_1:-75830118 | None:intergenic |
| CCATATGTACCTTTGGTGGC+TGG | 0.470715 | 3_1:+75831653 | Msa0375900:CDS |
| CCAGCCACCAAAGGTACATA+TGG | 0.474362 | 3_1:-75831653 | None:intergenic |
| AGGTTGCAAGCACAAGCTGC+AGG | 0.475586 | 3_1:+75830367 | Msa0375900:CDS |
| CCGAATATGTGGGAGGGAAA+AGG | 0.476013 | 3_1:-75829845 | None:intergenic |
| GGTCGAGCTGGCCCCTCCGT+TGG | 0.479589 | 3_1:+75834103 | Msa0375900:CDS |
| ACCTGGAGTATTCCAGACTT+TGG | 0.480063 | 3_1:+75832433 | Msa0375900:CDS |
| TGTTGTTCGGAAGCCATCCA+TGG | 0.481781 | 3_1:-75829997 | None:intergenic |
| AAACTTCTTAGTTTGGTTGG+AGG | 0.485679 | 3_1:+75833309 | Msa0375900:CDS |
| TCTCAGCAACAAAGCCGCTT+CGG | 0.487852 | 3_1:-75834223 | None:intergenic |
| CTGTTCCATGGAGTCCAGCC+CGG | 0.488086 | 3_1:-75831184 | None:intergenic |
| GAAATGGGTCGCCGAATATG+TGG | 0.488473 | 3_1:-75829856 | None:intergenic |
| TGTTCCATGGAGTCCAGCCC+GGG | 0.495606 | 3_1:-75831183 | None:intergenic |
| GTTGCAGGAACTCTAGCGGC+TGG | 0.498177 | 3_1:+75833384 | Msa0375900:CDS |
| GACAGACACTGATAGAGATC+TGG | 0.502105 | 3_1:+75833755 | Msa0375900:CDS |
| GAACGCGCTTTCTCCGCCGC+CGG | 0.503934 | 3_1:+75830090 | Msa0375900:CDS |
| ACCTTTGGTGGCTGGTTCGT+TGG | 0.504745 | 3_1:+75831661 | Msa0375900:CDS |
| CGTGTCCTGTGGACTGGCAT+GGG | 0.506549 | 3_1:+75833132 | Msa0375900:CDS |
| AGACAACGCCTACCAAAGTC+TGG | 0.507561 | 3_1:-75832445 | None:intergenic |
| GGAGTATTCCAGACTTTGGT+AGG | 0.512210 | 3_1:+75832437 | Msa0375900:CDS |
| TTGAATTGGAGTTTGTTGTT+CGG | 0.514291 | 3_1:-75830010 | None:intergenic |
| CCTTTGTACCGAAAACAATC+GGG | 0.520239 | 3_1:-75831221 | None:intergenic |
| TAAAGTTTGCCCTAAATCAC+CGG | 0.520255 | 3_1:+75834152 | Msa0375900:CDS |
| AGTTATCGTGTCCTGTGGAC+TGG | 0.521637 | 3_1:+75833126 | Msa0375900:CDS |
| CAAGTTGGCAAGAAGCCACC+TGG | 0.523320 | 3_1:+75832416 | Msa0375900:CDS |
| GAAAACATCAGCATTGCACT+TGG | 0.524009 | 3_1:+75834480 | Msa0375900:three_prime_UTR |
| AGAGGACCTTGGCAACATCA+AGG | 0.528433 | 3_1:-75830146 | None:intergenic |
| TCGTGTCCTGTGGACTGGCA+TGG | 0.528693 | 3_1:+75833131 | Msa0375900:CDS |
| AACACCATATGTACCTTTGG+TGG | 0.530531 | 3_1:+75831649 | Msa0375900:CDS |
| GGTACATATGGTGTTGCAGT+TGG | 0.530637 | 3_1:-75831641 | None:intergenic |
| GTTGTTCGGAAGCCATCCAT+GGG | 0.533409 | 3_1:-75829996 | None:intergenic |
| CCATCCTTTCTCAGAGATGG+AGG | 0.535460 | 3_1:+75834043 | Msa0375900:intron |
| TCTCCATCATGTACCCGGGC+TGG | 0.535772 | 3_1:+75831170 | Msa0375900:CDS |
| AATATTTGTGCCCTTGACAT+TGG | 0.536147 | 3_1:-75832468 | None:intergenic |
| ACTTGCCAGAACTCGTATGC+AGG | 0.537143 | 3_1:+75831721 | Msa0375900:CDS |
| CGTTGATTCATGATCAGAAA+CGG | 0.537237 | 3_1:-75834298 | None:intergenic |
| CAATCCCCTTGATGTTGCCA+AGG | 0.537891 | 3_1:+75830140 | Msa0375900:CDS |
| GACCAACAAATCGCAGAGAA+TGG | 0.538249 | 3_1:-75833177 | None:intergenic |
| AAGGCTTTACTAGGCTATGG+AGG | 0.540792 | 3_1:+75831407 | Msa0375900:CDS |
| TGTACCCGGGCTGGACTCCA+TGG | 0.541126 | 3_1:+75831179 | Msa0375900:CDS |
| ACCAAAGTCTGGAATACTCC+AGG | 0.547236 | 3_1:-75832434 | None:intergenic |
| CGCAGAGAATGGTACATCAC+GGG | 0.547764 | 3_1:-75833166 | None:intergenic |
| AGGAATGAAAAGAACGGCGA+TGG | 0.548225 | 3_1:-75829825 | None:intergenic |
| GATGTTCTCCATCATGTACC+CGG | 0.548614 | 3_1:+75831165 | Msa0375900:CDS |
| GAGGACCTTGGCAACATCAA+GGG | 0.549765 | 3_1:-75830145 | None:intergenic |
| AGTCCAGCCCGGGTACATGA+TGG | 0.554145 | 3_1:-75831173 | None:intergenic |
| ATTCATGATCAGAAACGGAC+TGG | 0.558004 | 3_1:-75834293 | None:intergenic |
| GTGCACCCATGCCAGTCCAC+AGG | 0.572073 | 3_1:-75833137 | None:intergenic |
| GCCAAGAACACTCAATATAC+CGG | 0.573027 | 3_1:-75833340 | None:intergenic |
| TCAATTCCTCGAACCAGTTG+CGG | 0.573380 | 3_1:-75831604 | None:intergenic |
| GGAATGAAAAGAACGGCGAT+GGG | 0.575426 | 3_1:-75829824 | None:intergenic |
| AGGCGTTGTCTCCAATGTCA+AGG | 0.575701 | 3_1:+75832457 | Msa0375900:CDS |
| CTCTATCAGTGTCTGTCTCG+TGG | 0.575977 | 3_1:-75833749 | None:intergenic |
| TATATTCCGCAACTGGTTCG+AGG | 0.582284 | 3_1:+75831598 | Msa0375900:CDS |
| GCATTTAAAGAGACTCAAGT+TGG | 0.586081 | 3_1:+75832401 | Msa0375900:CDS |
| TTGGTTGGAGGAGATGATGC+CGG | 0.587114 | 3_1:+75833321 | Msa0375900:CDS |
| CGGCAAACAACATCATGACC+AGG | 0.587737 | 3_1:+75834172 | Msa0375900:exon |
| GGTTGCAAGCACAAGCTGCA+GGG | 0.588434 | 3_1:+75830368 | Msa0375900:CDS |
| TCATGACCAGGTGAATATTG+TGG | 0.590141 | 3_1:+75834184 | Msa0375900:exon |
| GGGAAAAGGAATGAAAAGAA+CGG | 0.590933 | 3_1:-75829831 | None:intergenic |
| GACATAGTGATACTGTTCCA+TGG | 0.593994 | 3_1:-75831196 | None:intergenic |
| GTTGCAAGCACAAGCTGCAG+GGG | 0.611263 | 3_1:+75830369 | Msa0375900:CDS |
| AAATGGGTCGCCGAATATGT+GGG | 0.612193 | 3_1:-75829855 | None:intergenic |
| GGCGTTGTCTCCAATGTCAA+GGG | 0.612254 | 3_1:+75832458 | Msa0375900:CDS |
| GCCAACGAACCAGCCACCAA+AGG | 0.612619 | 3_1:-75831662 | None:intergenic |
| AGGACCTTGGCAACATCAAG+GGG | 0.617908 | 3_1:-75830144 | None:intergenic |
| GTGCACTTACAACTGTTCGA+TGG | 0.620108 | 3_1:-75832491 | None:intergenic |
| CTTGGCTATGTATACACACA+GGG | 0.621139 | 3_1:+75834498 | Msa0375900:three_prime_UTR |
| CCGAATCCAAAACCCATGGA+TGG | 0.626321 | 3_1:+75829984 | Msa0375900:CDS |
| AAATGAAACAACAATTCCAA+CGG | 0.627429 | 3_1:-75834119 | None:intergenic |
| TGCAAAGTTATCGTGTCCTG+TGG | 0.628434 | 3_1:+75833121 | Msa0375900:CDS |
| GGAATATATCATAGCAAGGA+AGG | 0.628866 | 3_1:-75831583 | None:intergenic |
| GAAACAACAATTCCAACGGA+GGG | 0.630162 | 3_1:-75834115 | None:intergenic |
| TCGCAGAGAATGGTACATCA+CGG | 0.630194 | 3_1:-75833167 | None:intergenic |
| AGGCTTTACTAGGCTATGGA+GGG | 0.631179 | 3_1:+75831408 | Msa0375900:CDS |
| TTGCGGAATATATCATAGCA+AGG | 0.637280 | 3_1:-75831587 | None:intergenic |
| ATGTTCTCCATCATGTACCC+GGG | 0.637756 | 3_1:+75831166 | Msa0375900:CDS |
| AAATATCCACAATATTCACC+TGG | 0.641051 | 3_1:-75834190 | None:intergenic |
| AGACACTGATAGAGATCTGG+AGG | 0.643646 | 3_1:+75833758 | Msa0375900:CDS |
| ATCAAGGGGATTGACAATGA+CGG | 0.647324 | 3_1:-75830130 | None:intergenic |
| GGGTCGCCGAATATGTGGGA+GGG | 0.649577 | 3_1:-75829851 | None:intergenic |
| TGAAACAACAATTCCAACGG+AGG | 0.657016 | 3_1:-75834116 | None:intergenic |
| CAGACCGAATCCAAAACCCA+TGG | 0.657251 | 3_1:+75829980 | Msa0375900:CDS |
| ACTTGGCTATGTATACACAC+AGG | 0.657301 | 3_1:+75834497 | Msa0375900:three_prime_UTR |
| GGCTTTACTAGGCTATGGAG+GGG | 0.661317 | 3_1:+75831409 | Msa0375900:CDS |
| ACTACTATTGTCTACAAACG+TGG | 0.664161 | 3_1:+75829760 | None:intergenic |
| AAACAACAATTCCAACGGAG+GGG | 0.665573 | 3_1:-75834114 | None:intergenic |
| TCATCGTGGTAGTTAAACAA+TGG | 0.666779 | 3_1:+75829948 | Msa0375900:exon |
| TGGGTCGCCGAATATGTGGG+AGG | 0.669378 | 3_1:-75829852 | None:intergenic |
| GGGCCAGCTCGACCAACTCG+CGG | 0.675233 | 3_1:-75834094 | None:intergenic |
| CAATTTAGTCATCGTCATCG+TGG | 0.681226 | 3_1:+75829934 | Msa0375900:five_prime_UTR |
| AATGACGGCGGAGAGAAAGG+CGG | 0.683197 | 3_1:-75830115 | None:intergenic |
| ACTAGCAGTGCAGTATCCAG+AGG | 0.695443 | 3_1:-75834247 | None:intergenic |
| TTGTACCGAAAACAATCGGG+AGG | 0.703695 | 3_1:-75831218 | None:intergenic |
| CTACTGATGAGATTACTGAG+AGG | 0.705135 | 3_1:-75830406 | None:intergenic |
| AAGGGGATTGACAATGACGG+CGG | 0.721836 | 3_1:-75830127 | None:intergenic |
| AAAGTCTGGAATACTCCAGG+TGG | 0.725173 | 3_1:-75832431 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAATTAAAAAAAAGT+GGG | - | chr3_1:75830183-75830202 | None:intergenic | 10.0% |
| !! | AAAATGAAATTAAAAAAAAG+TGG | - | chr3_1:75830184-75830203 | None:intergenic | 10.0% |
| !! | AAAAATTTCAATTAAGATAA+TGG | + | chr3_1:75830793-75830812 | Msa0375900:intron | 10.0% |
| !! | AAAATTTCAATTAAGATAAT+GGG | + | chr3_1:75830794-75830813 | Msa0375900:intron | 10.0% |
| !! | AAGAATAAAAGAAAATAATT+CGG | - | chr3_1:75831765-75831784 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTAACTGA+TGG | + | chr3_1:75832035-75832054 | Msa0375900:intron | 10.0% |
| !!! | GTATAAAAAAGATAATTTTA+AGG | - | chr3_1:75832146-75832165 | None:intergenic | 10.0% |
| !!! | TGAATAAAATTTTAGTTATT+TGG | + | chr3_1:75834458-75834477 | Msa0375900:three_prime_UTR | 10.0% |
| !!! | ATTTAGGATTATTATGATTT+TGG | - | chr3_1:75830041-75830060 | None:intergenic | 15.0% |
| !! | AAATTTCAATTAAGATAATG+GGG | + | chr3_1:75830795-75830814 | Msa0375900:intron | 15.0% |
| !! | TATTTGTAAAATTATACAAC+AGG | + | chr3_1:75831256-75831275 | Msa0375900:CDS | 15.0% |
| !!! | AAAAATCTTTTGATTTTTTC+TGG | + | chr3_1:75832093-75832112 | Msa0375900:intron | 15.0% |
| !!! | AAAATCTTTTGATTTTTTCT+GGG | + | chr3_1:75832094-75832113 | Msa0375900:intron | 15.0% |
| !!! | TTTTTTATCTCTTTTTTTTG+TGG | - | chr3_1:75832525-75832544 | None:intergenic | 15.0% |
| !! | AAAAAATTAATGTACATTGA+AGG | + | chr3_1:75832541-75832560 | Msa0375900:intron | 15.0% |
| !! | AATGAACTGATAATTTAAAT+AGG | + | chr3_1:75832808-75832827 | Msa0375900:intron | 15.0% |
| !!! | ATTTTTAAAATTCATAGGAA+TGG | + | chr3_1:75832860-75832879 | Msa0375900:intron | 15.0% |
| !! | TGAAAAGAAAAAAAAAATAC+AGG | - | chr3_1:75833491-75833510 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATAACCAGTAT+AGG | + | chr3_1:75834334-75834353 | Msa0375900:three_prime_UTR | 15.0% |
| !! | AGAAAAATGTGAAATGAAAT+GGG | - | chr3_1:75829874-75829893 | None:intergenic | 20.0% |
| !!! | TGATTTTGGATAATTTGAAT+TGG | - | chr3_1:75830027-75830046 | None:intergenic | 20.0% |
| !!! | TTGTCATTATTTGATGATTT+AGG | - | chr3_1:75830057-75830076 | None:intergenic | 20.0% |
| !! | TCATCAAATAATGACAAATT+AGG | + | chr3_1:75830060-75830079 | Msa0375900:CDS | 20.0% |
| !! | CATCAAATAATGACAAATTA+GGG | + | chr3_1:75830061-75830080 | Msa0375900:CDS | 20.0% |
| !!! | TCAATATTTAGCTTTATTGT+TGG | + | chr3_1:75830525-75830544 | Msa0375900:intron | 20.0% |
| !! | TTGGTAAAAAATACTTATAG+TGG | + | chr3_1:75830575-75830594 | Msa0375900:intron | 20.0% |
| !! | TATGTAAATAACAACTAGAT+TGG | - | chr3_1:75831057-75831076 | None:intergenic | 20.0% |
| !! | TCTGAAAAACAATATTAGAA+AGG | - | chr3_1:75831130-75831149 | None:intergenic | 20.0% |
| !! | TATTATAGAATATACGTACT+TGG | + | chr3_1:75831291-75831310 | Msa0375900:intron | 20.0% |
| !! | AATTAAACAGTGATAAATCA+TGG | - | chr3_1:75831961-75831980 | None:intergenic | 20.0% |
| !! | TATTCAAATTATGATGATTG+TGG | + | chr3_1:75831997-75832016 | Msa0375900:intron | 20.0% |
| !! | ATTTATTCAATTGATCATGT+TGG | + | chr3_1:75832205-75832224 | Msa0375900:intron | 20.0% |
| !!! | AATTTTAAAATTTGTCGAGT+TGG | + | chr3_1:75832599-75832618 | Msa0375900:intron | 20.0% |
| !!! | CTATTTTGATAATCAATTGT+GGG | + | chr3_1:75832979-75832998 | Msa0375900:intron | 20.0% |
| !!! | ATAAATTTAAAACCTAGCAA+AGG | + | chr3_1:75833059-75833078 | Msa0375900:intron | 20.0% |
| !!! | TTTTTCTTTTCAAGTTTCAA+AGG | + | chr3_1:75833499-75833518 | Msa0375900:intron | 20.0% |
| !!! | TTTTCTTTTCAAGTTTCAAA+GGG | + | chr3_1:75833500-75833519 | Msa0375900:intron | 20.0% |
| !! | TATCAATATAGTGATATAAC+TGG | + | chr3_1:75833987-75834006 | Msa0375900:intron | 20.0% |
| !!! | TTTATTCAAAATTTGCTCTT+GGG | - | chr3_1:75834446-75834465 | None:intergenic | 20.0% |
| !!! | TTTTATTCAAAATTTGCTCT+TGG | - | chr3_1:75834447-75834466 | None:intergenic | 20.0% |
| ! | GAGAAAAATGTGAAATGAAA+TGG | - | chr3_1:75829875-75829894 | None:intergenic | 25.0% |
| ! | AATTAAAAAAAAGTGGGAAG+AGG | - | chr3_1:75830177-75830196 | None:intergenic | 25.0% |
| ! | GCGAATATGAAATAATCAAA+AGG | - | chr3_1:75830225-75830244 | None:intergenic | 25.0% |
| !! | TTTTCTTCATTTATCAGACA+AGG | + | chr3_1:75830347-75830366 | Msa0375900:intron | 25.0% |
| ! | TTGTCATAAAAGACTGAAAA+GGG | - | chr3_1:75830477-75830496 | None:intergenic | 25.0% |
| ! | ATTGTCATAAAAGACTGAAA+AGG | - | chr3_1:75830478-75830497 | None:intergenic | 25.0% |
| !! | GAAAATTCTGTCTTTTTACA+AGG | + | chr3_1:75831083-75831102 | Msa0375900:intron | 25.0% |
| ! | TGTAAAATTATACAACAGGT+TGG | + | chr3_1:75831260-75831279 | Msa0375900:intron | 25.0% |
| ! | ATGTGAACATATAAAAGAAC+AGG | - | chr3_1:75831549-75831568 | None:intergenic | 25.0% |
| !! | TTCTTTTATATGTTCACATC+AGG | + | chr3_1:75831550-75831569 | Msa0375900:intron | 25.0% |
| ! | TTATCACTGTTTAATTCCAA+TGG | + | chr3_1:75831965-75831984 | Msa0375900:intron | 25.0% |
| ! | TATCACTGTTTAATTCCAAT+GGG | + | chr3_1:75831966-75831985 | Msa0375900:intron | 25.0% |
| !! | GTATTGCTATGGATTTTATT+TGG | + | chr3_1:75832227-75832246 | Msa0375900:intron | 25.0% |
| ! | TGATTTCTTGATTCTTTAGT+CGG | + | chr3_1:75832275-75832294 | Msa0375900:intron | 25.0% |
| ! | AAACACAGAATATGATAACA+CGG | - | chr3_1:75832316-75832335 | None:intergenic | 25.0% |
| ! | TTAATACAACAACAACAATC+AGG | + | chr3_1:75832751-75832770 | Msa0375900:intron | 25.0% |
| ! | ATTTACATTTCTGATCTCTT+TGG | + | chr3_1:75832934-75832953 | Msa0375900:intron | 25.0% |
| ! | TTGATTATCAAAATAGCCAT+GGG | - | chr3_1:75832975-75832994 | None:intergenic | 25.0% |
| ! | ATTGATTATCAAAATAGCCA+TGG | - | chr3_1:75832976-75832995 | None:intergenic | 25.0% |
| !!! | GCTATTTTGATAATCAATTG+TGG | + | chr3_1:75832978-75832997 | Msa0375900:intron | 25.0% |
| ! | TAGAAGAAAACTTCTTAGTT+TGG | + | chr3_1:75833302-75833321 | Msa0375900:CDS | 25.0% |
| !!! | ATTGCGATTTATTTTTTCTC+TGG | + | chr3_1:75833558-75833577 | Msa0375900:intron | 25.0% |
| !!! | TTGCGATTTATTTTTTCTCT+GGG | + | chr3_1:75833559-75833578 | Msa0375900:intron | 25.0% |
| !!! | TTATTTTTTCTCTGGGAAAT+AGG | + | chr3_1:75833566-75833585 | Msa0375900:intron | 25.0% |
| !! | ACTATTTGGAATCCAAATTA+TGG | - | chr3_1:75833788-75833807 | None:intergenic | 25.0% |
| ! | AAATGAAACAACAATTCCAA+CGG | - | chr3_1:75834122-75834141 | None:intergenic | 25.0% |
| !! | AGGTCAATTTTGTTACAATT+GGG | + | chr3_1:75834414-75834433 | Msa0375900:three_prime_UTR | 25.0% |
| !! | TTGAATTGGAGTTTGTTGTT+CGG | - | chr3_1:75830013-75830032 | None:intergenic | 30.0% |
| ATCAGTAGAATGTCATGTTT+CGG | + | chr3_1:75830421-75830440 | Msa0375900:CDS | 30.0% | |
| AATTCCATCAACTAACGTAT+TGG | - | chr3_1:75830646-75830665 | None:intergenic | 30.0% | |
| !! | TACTATCAGCTATGTTTTAG+AGG | - | chr3_1:75830677-75830696 | None:intergenic | 30.0% |
| ! | TTCAAGCACTAATTTTACCA+TGG | - | chr3_1:75830722-75830741 | None:intergenic | 30.0% |
| !! | TAAGATAATGGGGATAAAAG+TGG | + | chr3_1:75830805-75830824 | Msa0375900:intron | 30.0% |
| !! | AAGATAATGGGGATAAAAGT+GGG | + | chr3_1:75830806-75830825 | Msa0375900:intron | 30.0% |
| TTGAAAACAATCCCACATTA+CGG | - | chr3_1:75830994-75831013 | None:intergenic | 30.0% | |
| GAAAGGTCAAATTAATTGCT+CGG | - | chr3_1:75831113-75831132 | None:intergenic | 30.0% | |
| ATAGAATATACGTACTTGGA+CGG | + | chr3_1:75831295-75831314 | Msa0375900:intron | 30.0% | |
| !! | TGATTTGCTGTTTCAAGTAT+TGG | + | chr3_1:75831490-75831509 | Msa0375900:intron | 30.0% |
| TTTATATGTTCACATCAGGT+CGG | + | chr3_1:75831554-75831573 | Msa0375900:intron | 30.0% | |
| ATACACGGATTCAAAAAACA+TGG | - | chr3_1:75831821-75831840 | None:intergenic | 30.0% | |
| TTAGTTAAAGAACTGCATTG+TGG | + | chr3_1:75832067-75832086 | Msa0375900:intron | 30.0% | |
| TATATTCACTACAATTCACG+TGG | + | chr3_1:75832167-75832186 | Msa0375900:intron | 30.0% | |
| TCAAAAGCTGAAAAACACTA+GGG | - | chr3_1:75832258-75832277 | None:intergenic | 30.0% | |
| ATCAAAAGCTGAAAAACACT+AGG | - | chr3_1:75832259-75832278 | None:intergenic | 30.0% | |
| AACACAGAATATGATAACAC+GGG | - | chr3_1:75832315-75832334 | None:intergenic | 30.0% | |
| GCTAAATCCAATTGTTCATT+CGG | - | chr3_1:75832728-75832747 | None:intergenic | 30.0% | |
| TTCTATATGTCATGCTTGTA+TGG | + | chr3_1:75832901-75832920 | Msa0375900:intron | 30.0% | |
| !! | ATCTCTTTGGTTTGATTCTA+CGG | + | chr3_1:75832947-75832966 | Msa0375900:intron | 30.0% |
| ! | CCTTAATAAAAGGATTTGGT+AGG | - | chr3_1:75833224-75833243 | None:intergenic | 30.0% |
| ! | CCTACCAAATCCTTTTATTA+AGG | + | chr3_1:75833221-75833240 | Msa0375900:intron | 30.0% |
| GACTCCTTAATAAAAGGATT+TGG | - | chr3_1:75833228-75833247 | None:intergenic | 30.0% | |
| ! | GAAATCGACTCCTTAATAAA+AGG | - | chr3_1:75833234-75833253 | None:intergenic | 30.0% |
| ! | AGAAAACTTCTTAGTTTGGT+TGG | + | chr3_1:75833306-75833325 | Msa0375900:CDS | 30.0% |
| ! | AGATAGAGGTTTGTTTCATT+AGG | + | chr3_1:75833445-75833464 | Msa0375900:intron | 30.0% |
| !!! | TGTTTCATTAGGTTTTGAGT+CGG | + | chr3_1:75833456-75833475 | Msa0375900:intron | 30.0% |
| !!! | TTTTCAAGTTTCAAAGGGAA+AGG | + | chr3_1:75833505-75833524 | Msa0375900:intron | 30.0% |
| ! | TCTGCAAAATGTTTTGTAGA+TGG | + | chr3_1:75833702-75833721 | Msa0375900:intron | 30.0% |
| TCAATTATATGTCGCATAGA+TGG | - | chr3_1:75833890-75833909 | None:intergenic | 30.0% | |
| AAATATCCACAATATTCACC+TGG | - | chr3_1:75834193-75834212 | None:intergenic | 30.0% | |
| !! | ATTTTTGTTTATTGCCGAAG+CGG | + | chr3_1:75834209-75834228 | Msa0375900:three_prime_UTR | 30.0% |
| ATGAATCAACGTTCATGAAT+AGG | + | chr3_1:75834310-75834329 | Msa0375900:three_prime_UTR | 30.0% | |
| AAGGCTCAAAAACCTAAATT+AGG | - | chr3_1:75834367-75834386 | None:intergenic | 30.0% | |
| !! | TTTAGGTTTTTGAGCCTTTT+TGG | + | chr3_1:75834369-75834388 | Msa0375900:three_prime_UTR | 30.0% |
| !! | TTAGGTTTTTGAGCCTTTTT+GGG | + | chr3_1:75834370-75834389 | Msa0375900:three_prime_UTR | 30.0% |
| ! | GTAACAAAATTGACCTCTTT+TGG | - | chr3_1:75834410-75834429 | None:intergenic | 30.0% |
| ! | GAGGTCAATTTTGTTACAAT+TGG | + | chr3_1:75834413-75834432 | Msa0375900:three_prime_UTR | 30.0% |
| GGGAAAAGGAATGAAAAGAA+CGG | - | chr3_1:75829834-75829853 | None:intergenic | 35.0% | |
| TCATCGTGGTAGTTAAACAA+TGG | + | chr3_1:75829948-75829967 | Msa0375900:exon | 35.0% | |
| GGACAAAAACGTACCATATT+TGG | - | chr3_1:75830448-75830467 | None:intergenic | 35.0% | |
| AAAGACTGAAAAGGGATGAA+AGG | - | chr3_1:75830469-75830488 | None:intergenic | 35.0% | |
| TTGTTGCCTTGATTGAACTA+CGG | + | chr3_1:75830500-75830519 | Msa0375900:intron | 35.0% | |
| TTGATACCGTAGTTCAATCA+AGG | - | chr3_1:75830509-75830528 | None:intergenic | 35.0% | |
| CAAACTATGTAGACTCTGTT+TGG | + | chr3_1:75830556-75830575 | Msa0375900:intron | 35.0% | |
| ATAGCCAATACGTTAGTTGA+TGG | + | chr3_1:75830639-75830658 | Msa0375900:intron | 35.0% | |
| !! | CAGATAAGTAAGTTGATCCA+TGG | + | chr3_1:75830702-75830721 | Msa0375900:intron | 35.0% |
| !! | AGATAATGGGGATAAAAGTG+GGG | + | chr3_1:75830807-75830826 | Msa0375900:intron | 35.0% |
| AAACGCTATAAGTTTGTGAG+AGG | + | chr3_1:75830885-75830904 | Msa0375900:intron | 35.0% | |
| AGAGGATGACCATTACTAAA+CGG | + | chr3_1:75830903-75830922 | Msa0375900:intron | 35.0% | |
| CTCGTATAACCGTTTAGTAA+TGG | - | chr3_1:75830915-75830934 | None:intergenic | 35.0% | |
| TCCTTTGTACCGAAAACAAT+CGG | - | chr3_1:75831225-75831244 | None:intergenic | 35.0% | |
| TTTGTTAATCAATGCCAGAG+TGG | + | chr3_1:75831371-75831390 | Msa0375900:intron | 35.0% | |
| TCCTGAAATAAATACCACTC+TGG | - | chr3_1:75831388-75831407 | None:intergenic | 35.0% | |
| GAGTGGTATTTATTTCAGGA+AGG | + | chr3_1:75831388-75831407 | Msa0375900:intron | 35.0% | |
| TATTTCAGGAAGGCTTTACT+AGG | + | chr3_1:75831398-75831417 | Msa0375900:intron | 35.0% | |
| GACATTACATAATGAGACCA+CGG | + | chr3_1:75831512-75831531 | Msa0375900:intron | 35.0% | |
| GGAATATATCATAGCAAGGA+AGG | - | chr3_1:75831586-75831605 | None:intergenic | 35.0% | |
| TTGCGGAATATATCATAGCA+AGG | - | chr3_1:75831590-75831609 | None:intergenic | 35.0% | |
| !! | ACAGTTAACTTGCTCATACA+CGG | - | chr3_1:75831836-75831855 | None:intergenic | 35.0% |
| AAAATAAAACATGCACCCTC+AGG | - | chr3_1:75831901-75831920 | None:intergenic | 35.0% | |
| TGATCATGTTGGTATTGCTA+TGG | + | chr3_1:75832216-75832235 | Msa0375900:intron | 35.0% | |
| TGTGGAATAGGAATTATAGC+TGG | - | chr3_1:75832340-75832359 | None:intergenic | 35.0% | |
| ATAATTCCTATTCCACAGTC+TGG | + | chr3_1:75832343-75832362 | Msa0375900:intron | 35.0% | |
| AAAAATCCAGACTGTGGAAT+AGG | - | chr3_1:75832352-75832371 | None:intergenic | 35.0% | |
| ! | TCTGGATTTTTACTGGTGTT+TGG | + | chr3_1:75832361-75832380 | Msa0375900:intron | 35.0% |
| TTTACTGGTGTTTGGATCTT+TGG | + | chr3_1:75832369-75832388 | Msa0375900:intron | 35.0% | |
| !! | TTTGGATCTTTGGTTTGTGT+AGG | + | chr3_1:75832379-75832398 | Msa0375900:intron | 35.0% |
| GCATTTAAAGAGACTCAAGT+TGG | + | chr3_1:75832401-75832420 | Msa0375900:CDS | 35.0% | |
| AATATTTGTGCCCTTGACAT+TGG | - | chr3_1:75832471-75832490 | None:intergenic | 35.0% | |
| !! | TTAAAATTTGTCGAGTTGGC+TGG | + | chr3_1:75832603-75832622 | Msa0375900:intron | 35.0% |
| ! | TTTTAGGCCGAATGAACAAT+TGG | + | chr3_1:75832718-75832737 | Msa0375900:intron | 35.0% |
| ! | AAACTTCTTAGTTTGGTTGG+AGG | + | chr3_1:75833309-75833328 | Msa0375900:CDS | 35.0% |
| TAGATGTTGCAAAAACTCGT+AGG | + | chr3_1:75833421-75833440 | Msa0375900:CDS | 35.0% | |
| TAAACTCAAGCATAAAAGCG+CGG | - | chr3_1:75833820-75833839 | None:intergenic | 35.0% | |
| ! | AGAAATTCACTTAGAGCACT+AGG | - | chr3_1:75833847-75833866 | None:intergenic | 35.0% |
| CTAGATGACATTAGTTCAAG+AGG | - | chr3_1:75833949-75833968 | None:intergenic | 35.0% | |
| CTCTTGAACTAATGTCATCT+AGG | + | chr3_1:75833947-75833966 | Msa0375900:intron | 35.0% | |
| !!! | AAAGGACTTTTTACCGGTTT+TGG | + | chr3_1:75834070-75834089 | Msa0375900:CDS | 35.0% |
| TAAAGTTTGCCCTAAATCAC+CGG | + | chr3_1:75834152-75834171 | Msa0375900:CDS | 35.0% | |
| !!! | CTGCTAGTTTTTTGATGGAA+AGG | + | chr3_1:75834262-75834281 | Msa0375900:three_prime_UTR | 35.0% |
| !! | CGTTGATTCATGATCAGAAA+CGG | - | chr3_1:75834301-75834320 | None:intergenic | 35.0% |
| ATAGGACAACCTCCTAATTT+AGG | + | chr3_1:75834352-75834371 | Msa0375900:three_prime_UTR | 35.0% | |
| GCTCAAAAACCTAAATTAGG+AGG | - | chr3_1:75834364-75834383 | None:intergenic | 35.0% | |
| CAAAGGCAAAAAACCCAAAA+AGG | - | chr3_1:75834386-75834405 | None:intergenic | 35.0% | |
| ! | TTTTTGCCTTTGACCAAAAG+AGG | + | chr3_1:75834394-75834413 | Msa0375900:three_prime_UTR | 35.0% |
| ! | AATTGACCTCTTTTGGTCAA+AGG | - | chr3_1:75834403-75834422 | None:intergenic | 35.0% |
| CACGATGACGATGACTAAAT+TGG | - | chr3_1:75829936-75829955 | None:intergenic | 40.0% | |
| CAATTTAGTCATCGTCATCG+TGG | + | chr3_1:75829934-75829953 | Msa0375900:five_prime_UTR | 40.0% | |
| ATCAAGGGGATTGACAATGA+CGG | - | chr3_1:75830133-75830152 | None:intergenic | 40.0% | |
| CTACTGATGAGATTACTGAG+AGG | - | chr3_1:75830409-75830428 | None:intergenic | 40.0% | |
| GTCATGTTTCGGTCCAAATA+TGG | + | chr3_1:75830432-75830451 | Msa0375900:CDS | 40.0% | |
| ! | ATTTGCTGATGACCTTGTAG+CGG | + | chr3_1:75830616-75830635 | Msa0375900:intron | 40.0% |
| GACATAGTGATACTGTTCCA+TGG | - | chr3_1:75831199-75831218 | None:intergenic | 40.0% | |
| ! | TATGTCCTCCCGATTGTTTT+CGG | + | chr3_1:75831213-75831232 | Msa0375900:CDS | 40.0% |
| CCTTTGTACCGAAAACAATC+GGG | - | chr3_1:75831224-75831243 | None:intergenic | 40.0% | |
| ! | TTTTCGGTACAAAGGAACAC+TGG | + | chr3_1:75831229-75831248 | Msa0375900:CDS | 40.0% |
| GCCAGAGTGGTATTTATTTC+AGG | + | chr3_1:75831384-75831403 | Msa0375900:intron | 40.0% | |
| TTGACTAGTGAACCTACAGT+TGG | - | chr3_1:75831463-75831482 | None:intergenic | 40.0% | |
| CATAATGAGACCACGGAATT+TGG | + | chr3_1:75831519-75831538 | Msa0375900:intron | 40.0% | |
| GCTATGATATATTCCGCAAC+TGG | + | chr3_1:75831591-75831610 | Msa0375900:CDS | 40.0% | |
| TGCAACACCATATGTACCTT+TGG | + | chr3_1:75831646-75831665 | Msa0375900:CDS | 40.0% | |
| AACACCATATGTACCTTTGG+TGG | + | chr3_1:75831649-75831668 | Msa0375900:CDS | 40.0% | |
| AAAAACCTGCATACGAGTTC+TGG | - | chr3_1:75831729-75831748 | None:intergenic | 40.0% | |
| TAACTGTGACTTAAACAGCG+TGG | - | chr3_1:75831794-75831813 | None:intergenic | 40.0% | |
| GCAAGTTAACTGTCAGTTCA+TGG | + | chr3_1:75831843-75831862 | Msa0375900:intron | 40.0% | |
| AGCCTTACAGTTACTATTGC+TGG | + | chr3_1:75831874-75831893 | Msa0375900:intron | 40.0% | |
| GACCAGCAATAGTAACTGTA+AGG | - | chr3_1:75831879-75831898 | None:intergenic | 40.0% | |
| AAATCATGGCAGCAATGACT+TGG | - | chr3_1:75831947-75831966 | None:intergenic | 40.0% | |
| TTGAATACAATGCTGCCCAT+TGG | - | chr3_1:75831984-75832003 | None:intergenic | 40.0% | |
| ! | TCCACAGTCTGGATTTTTAC+TGG | + | chr3_1:75832354-75832373 | Msa0375900:intron | 40.0% |
| ACCAGTAAAAATCCAGACTG+TGG | - | chr3_1:75832358-75832377 | None:intergenic | 40.0% | |
| TTGAAGGAGTCTGCTTACTT+TGG | + | chr3_1:75832557-75832576 | Msa0375900:intron | 40.0% | |
| GCTAAATAACCCCACTTAGT+GGG | - | chr3_1:75832783-75832802 | None:intergenic | 40.0% | |
| AGCTAAATAACCCCACTTAG+TGG | - | chr3_1:75832784-75832803 | None:intergenic | 40.0% | |
| AATCAATTGTGGGACTGACT+AGG | + | chr3_1:75832989-75833008 | Msa0375900:intron | 40.0% | |
| AGAATGCTGATACCTTTGCT+AGG | - | chr3_1:75833074-75833093 | None:intergenic | 40.0% | |
| CACGATAACTTTGCACTGTA+AGG | - | chr3_1:75833116-75833135 | None:intergenic | 40.0% | |
| TACCATTCTCTGCGATTTGT+TGG | + | chr3_1:75833175-75833194 | Msa0375900:CDS | 40.0% | |
| GCCAAGAACACTCAATATAC+CGG | - | chr3_1:75833343-75833362 | None:intergenic | 40.0% | |
| !!! | TTTTCAGCTGGTTTTGTTGC+AGG | + | chr3_1:75833369-75833388 | Msa0375900:CDS | 40.0% |
| ! | TTTTGTTGCAGGAACTCTAG+CGG | + | chr3_1:75833380-75833399 | Msa0375900:CDS | 40.0% |
| ! | CGAGTTTTTGCAACATCTAG+TGG | - | chr3_1:75833420-75833439 | None:intergenic | 40.0% |
| AAAAACTCGTAGGCAGATAG+AGG | + | chr3_1:75833431-75833450 | Msa0375900:CDS | 40.0% | |
| TCAAGTTTCAAAGGGAAAGG+AGG | + | chr3_1:75833508-75833527 | Msa0375900:intron | 40.0% | |
| CAAGTTTCAAAGGGAAAGGA+GGG | + | chr3_1:75833509-75833528 | Msa0375900:intron | 40.0% | |
| AAGTTTCAAAGGGAAAGGAG+GGG | + | chr3_1:75833510-75833529 | Msa0375900:intron | 40.0% | |
| ! | TTTCTCTGGGAAATAGGTTG+TGG | + | chr3_1:75833572-75833591 | Msa0375900:intron | 40.0% |
| ! | TTCTCTGGGAAATAGGTTGT+GGG | + | chr3_1:75833573-75833592 | Msa0375900:intron | 40.0% |
| GGAAATAGGTTGTGGGAAAT+AGG | + | chr3_1:75833580-75833599 | Msa0375900:intron | 40.0% | |
| TGCAGATGCATGCATATAGA+AGG | - | chr3_1:75833657-75833676 | None:intergenic | 40.0% | |
| TATGCATGCATCTGCACATT+TGG | + | chr3_1:75833661-75833680 | Msa0375900:intron | 40.0% | |
| ! | TCTGGAGGTATGCCATAATT+TGG | + | chr3_1:75833773-75833792 | Msa0375900:intron | 40.0% |
| CGCGGATAAAGTCAACTATT+TGG | - | chr3_1:75833802-75833821 | None:intergenic | 40.0% | |
| TTACCATCCTTTCTCAGAGA+TGG | + | chr3_1:75834040-75834059 | Msa0375900:intron | 40.0% | |
| ! | GGCTTGAAAGGACTTTTTAC+CGG | + | chr3_1:75834064-75834083 | Msa0375900:CDS | 40.0% |
| AAACAACAATTCCAACGGAG+GGG | - | chr3_1:75834117-75834136 | None:intergenic | 40.0% | |
| GAAACAACAATTCCAACGGA+GGG | - | chr3_1:75834118-75834137 | None:intergenic | 40.0% | |
| TGAAACAACAATTCCAACGG+AGG | - | chr3_1:75834119-75834138 | None:intergenic | 40.0% | |
| ! | TGTTGTTTGCCGGTGATTTA+GGG | - | chr3_1:75834164-75834183 | None:intergenic | 40.0% |
| ! | ATGTTGTTTGCCGGTGATTT+AGG | - | chr3_1:75834165-75834184 | None:intergenic | 40.0% |
| TCATGACCAGGTGAATATTG+TGG | + | chr3_1:75834184-75834203 | Msa0375900:exon | 40.0% | |
| !!! | CTGCACTGCTAGTTTTTTGA+TGG | + | chr3_1:75834257-75834276 | Msa0375900:three_prime_UTR | 40.0% |
| ATTCATGATCAGAAACGGAC+TGG | - | chr3_1:75834296-75834315 | None:intergenic | 40.0% | |
| ATTAGGAGGTTGTCCTATAC+TGG | - | chr3_1:75834350-75834369 | None:intergenic | 40.0% | |
| GAAAACATCAGCATTGCACT+TGG | + | chr3_1:75834480-75834499 | Msa0375900:three_prime_UTR | 40.0% | |
| ACTTGGCTATGTATACACAC+AGG | + | chr3_1:75834497-75834516 | Msa0375900:three_prime_UTR | 40.0% | |
| CTTGGCTATGTATACACACA+GGG | + | chr3_1:75834498-75834517 | Msa0375900:three_prime_UTR | 40.0% | |
| GGAATGAAAAGAACGGCGAT+GGG | - | chr3_1:75829827-75829846 | None:intergenic | 45.0% | |
| AGGAATGAAAAGAACGGCGA+TGG | - | chr3_1:75829828-75829847 | None:intergenic | 45.0% | |
| ! | CCTTTTCCCTCCCACATATT+CGG | + | chr3_1:75829845-75829864 | Msa0375900:five_prime_UTR | 45.0% |
| AAATGGGTCGCCGAATATGT+GGG | - | chr3_1:75829858-75829877 | None:intergenic | 45.0% | |
| !!! | CCATCCATGGGTTTTGGATT+CGG | - | chr3_1:75829987-75830006 | None:intergenic | 45.0% |
| AAGAGGAAGAAAGAGGACCT+TGG | - | chr3_1:75830160-75830179 | None:intergenic | 45.0% | |
| AAGTGGGAAGAGGAAGAAAG+AGG | - | chr3_1:75830167-75830186 | None:intergenic | 45.0% | |
| TGCATCTCAAGAAACGCTAC+AGG | + | chr3_1:75830853-75830872 | Msa0375900:intron | 45.0% | |
| ! | AGCTGCTAGCTTATAGCAGA+TGG | - | chr3_1:75830953-75830972 | None:intergenic | 45.0% |
| TCTGCTATAAGCTAGCAGCT+TGG | + | chr3_1:75830953-75830972 | Msa0375900:intron | 45.0% | |
| ! | CATTACGGCTCTGTTTTGCA+AGG | - | chr3_1:75830979-75830998 | None:intergenic | 45.0% |
| TGCAAAACAGAGCCGTAATG+TGG | + | chr3_1:75830979-75830998 | Msa0375900:intron | 45.0% | |
| GCAAAACAGAGCCGTAATGT+GGG | + | chr3_1:75830980-75830999 | Msa0375900:intron | 45.0% | |
| GATGTTCTCCATCATGTACC+CGG | + | chr3_1:75831165-75831184 | Msa0375900:CDS | 45.0% | |
| ATGTTCTCCATCATGTACCC+GGG | + | chr3_1:75831166-75831185 | Msa0375900:CDS | 45.0% | |
| TTGTACCGAAAACAATCGGG+AGG | - | chr3_1:75831221-75831240 | None:intergenic | 45.0% | |
| ! | CCCGATTGTTTTCGGTACAA+AGG | + | chr3_1:75831221-75831240 | Msa0375900:CDS | 45.0% |
| AGGAAGGCTTTACTAGGCTA+TGG | + | chr3_1:75831404-75831423 | Msa0375900:intron | 45.0% | |
| AAGGCTTTACTAGGCTATGG+AGG | + | chr3_1:75831407-75831426 | Msa0375900:CDS | 45.0% | |
| AGGCTTTACTAGGCTATGGA+GGG | + | chr3_1:75831408-75831427 | Msa0375900:CDS | 45.0% | |
| !! | TATATTCCGCAACTGGTTCG+AGG | + | chr3_1:75831598-75831617 | Msa0375900:CDS | 45.0% |
| TCAATTCCTCGAACCAGTTG+CGG | - | chr3_1:75831607-75831626 | None:intergenic | 45.0% | |
| !! | TGTTGCAGTTGGAGCACTTT+TGG | - | chr3_1:75831633-75831652 | None:intergenic | 45.0% |
| !! | GGTACATATGGTGTTGCAGT+TGG | - | chr3_1:75831644-75831663 | None:intergenic | 45.0% |
| ! | CGAGTTCTGGCAAGTTCAAT+AGG | - | chr3_1:75831716-75831735 | None:intergenic | 45.0% |
| AGTTACTATTGCTGGTCCTG+AGG | + | chr3_1:75831882-75831901 | Msa0375900:intron | 45.0% | |
| GTTACTATTGCTGGTCCTGA+GGG | + | chr3_1:75831883-75831902 | Msa0375900:intron | 45.0% | |
| ! | AAAGTCTGGAATACTCCAGG+TGG | - | chr3_1:75832434-75832453 | None:intergenic | 45.0% |
| ! | ACCTGGAGTATTCCAGACTT+TGG | + | chr3_1:75832433-75832452 | Msa0375900:CDS | 45.0% |
| ! | ACCAAAGTCTGGAATACTCC+AGG | - | chr3_1:75832437-75832456 | None:intergenic | 45.0% |
| ! | GGAGTATTCCAGACTTTGGT+AGG | + | chr3_1:75832437-75832456 | Msa0375900:CDS | 45.0% |
| GTGCACTTACAACTGTTCGA+TGG | - | chr3_1:75832494-75832513 | None:intergenic | 45.0% | |
| TAACCCCACTTAGTGGGATA+AGG | - | chr3_1:75832777-75832796 | None:intergenic | 45.0% | |
| TGCAAAGTTATCGTGTCCTG+TGG | + | chr3_1:75833121-75833140 | Msa0375900:CDS | 45.0% | |
| TCGCAGAGAATGGTACATCA+CGG | - | chr3_1:75833170-75833189 | None:intergenic | 45.0% | |
| GACCAACAAATCGCAGAGAA+TGG | - | chr3_1:75833180-75833199 | None:intergenic | 45.0% | |
| ! | GGATTTGGTAGGAAACTCAC+AGG | - | chr3_1:75833213-75833232 | None:intergenic | 45.0% |
| GCCGGTATATTGAGTGTTCT+TGG | + | chr3_1:75833339-75833358 | Msa0375900:CDS | 45.0% | |
| !! | CTTGGCGCAAATTTTTCAGC+TGG | + | chr3_1:75833357-75833376 | Msa0375900:CDS | 45.0% |
| GACAGACACTGATAGAGATC+TGG | + | chr3_1:75833755-75833774 | Msa0375900:CDS | 45.0% | |
| AGACACTGATAGAGATCTGG+AGG | + | chr3_1:75833758-75833777 | Msa0375900:CDS | 45.0% | |
| ! | CTGGTCATGATGTTGTTTGC+CGG | - | chr3_1:75834174-75834193 | None:intergenic | 45.0% |
| !!! | TATAAAAAAGATAATTTTAA+GGG | - | chr3_1:75832145-75832164 | None:intergenic | 5.0% |
| !!! | ATTGTTAAAATATTAATTTT+AGG | + | chr3_1:75832702-75832721 | Msa0375900:intron | 5.0% |
| !!! | TTTTAATTTTTAAAATTCAT+AGG | + | chr3_1:75832855-75832874 | Msa0375900:intron | 5.0% |
| CCGAATATGTGGGAGGGAAA+AGG | - | chr3_1:75829848-75829867 | None:intergenic | 50.0% | |
| GAAATGGGTCGCCGAATATG+TGG | - | chr3_1:75829859-75829878 | None:intergenic | 50.0% | |
| CAGACCGAATCCAAAACCCA+TGG | + | chr3_1:75829980-75829999 | Msa0375900:CDS | 50.0% | |
| CCGAATCCAAAACCCATGGA+TGG | + | chr3_1:75829984-75830003 | Msa0375900:CDS | 50.0% | |
| GTTGTTCGGAAGCCATCCAT+GGG | - | chr3_1:75829999-75830018 | None:intergenic | 50.0% | |
| TGTTGTTCGGAAGCCATCCA+TGG | - | chr3_1:75830000-75830019 | None:intergenic | 50.0% | |
| AAGGGGATTGACAATGACGG+CGG | - | chr3_1:75830130-75830149 | None:intergenic | 50.0% | |
| CAATCCCCTTGATGTTGCCA+AGG | + | chr3_1:75830140-75830159 | Msa0375900:CDS | 50.0% | |
| AGGACCTTGGCAACATCAAG+GGG | - | chr3_1:75830147-75830166 | None:intergenic | 50.0% | |
| GAGGACCTTGGCAACATCAA+GGG | - | chr3_1:75830148-75830167 | None:intergenic | 50.0% | |
| AGAGGACCTTGGCAACATCA+AGG | - | chr3_1:75830149-75830168 | None:intergenic | 50.0% | |
| !! | CGTATTGGCTATCCGCTACA+AGG | - | chr3_1:75830631-75830650 | None:intergenic | 50.0% |
| GGCTTTACTAGGCTATGGAG+GGG | + | chr3_1:75831409-75831428 | Msa0375900:CDS | 50.0% | |
| GCTCTTGCAGTACCAACTGT+AGG | + | chr3_1:75831448-75831467 | Msa0375900:intron | 50.0% | |
| AACAGGTCAGCCAAATTCCG+TGG | - | chr3_1:75831532-75831551 | None:intergenic | 50.0% | |
| ! | CCAGCCACCAAAGGTACATA+TGG | - | chr3_1:75831656-75831675 | None:intergenic | 50.0% |
| ! | CCATATGTACCTTTGGTGGC+TGG | + | chr3_1:75831653-75831672 | Msa0375900:CDS | 50.0% |
| ACTTGCCAGAACTCGTATGC+AGG | + | chr3_1:75831721-75831740 | Msa0375900:CDS | 50.0% | |
| AGACAACGCCTACCAAAGTC+TGG | - | chr3_1:75832448-75832467 | None:intergenic | 50.0% | |
| ! | AGGCGTTGTCTCCAATGTCA+AGG | + | chr3_1:75832457-75832476 | Msa0375900:CDS | 50.0% |
| GGCGTTGTCTCCAATGTCAA+GGG | + | chr3_1:75832458-75832477 | Msa0375900:CDS | 50.0% | |
| ! | TCAGGCCTTATCCCACTAAG+TGG | + | chr3_1:75832769-75832788 | Msa0375900:intron | 50.0% |
| ! | CAGGCCTTATCCCACTAAGT+GGG | + | chr3_1:75832770-75832789 | Msa0375900:intron | 50.0% |
| ! | AGGCCTTATCCCACTAAGTG+GGG | + | chr3_1:75832771-75832790 | Msa0375900:intron | 50.0% |
| GTTTGATTCTACGGTGCCCA+TGG | + | chr3_1:75832956-75832975 | Msa0375900:intron | 50.0% | |
| AGTTATCGTGTCCTGTGGAC+TGG | + | chr3_1:75833126-75833145 | Msa0375900:CDS | 50.0% | |
| CGCAGAGAATGGTACATCAC+GGG | - | chr3_1:75833169-75833188 | None:intergenic | 50.0% | |
| TTGGTTGGAGGAGATGATGC+CGG | + | chr3_1:75833321-75833340 | Msa0375900:CDS | 50.0% | |
| TTTCAAAGGGAAAGGAGGGG+TGG | + | chr3_1:75833513-75833532 | Msa0375900:intron | 50.0% | |
| CTCTATCAGTGTCTGTCTCG+TGG | - | chr3_1:75833752-75833771 | None:intergenic | 50.0% | |
| CGCATAGATGGAGCAGATCA+TGG | - | chr3_1:75833878-75833897 | None:intergenic | 50.0% | |
| ! | CCTCCATCTCTGAGAAAGGA+TGG | - | chr3_1:75834046-75834065 | None:intergenic | 50.0% |
| CCATCCTTTCTCAGAGATGG+AGG | + | chr3_1:75834043-75834062 | Msa0375900:intron | 50.0% | |
| ! | CAAGCCTCCATCTCTGAGAA+AGG | - | chr3_1:75834050-75834069 | None:intergenic | 50.0% |
| CTCAGAGATGGAGGCTTGAA+AGG | + | chr3_1:75834052-75834071 | Msa0375900:intron | 50.0% | |
| CGGCAAACAACATCATGACC+AGG | + | chr3_1:75834172-75834191 | Msa0375900:exon | 50.0% | |
| TCTCAGCAACAAAGCCGCTT+CGG | - | chr3_1:75834226-75834245 | None:intergenic | 50.0% | |
| ! | GCTTTGTTGCTGAGAACCTC+TGG | + | chr3_1:75834231-75834250 | Msa0375900:three_prime_UTR | 50.0% |
| ACTAGCAGTGCAGTATCCAG+AGG | - | chr3_1:75834250-75834269 | None:intergenic | 50.0% | |
| ! | CGGAAGCCATCCATGGGTTT+TGG | - | chr3_1:75829993-75830012 | None:intergenic | 55.0% |
| AATGACGGCGGAGAGAAAGG+CGG | - | chr3_1:75830118-75830137 | None:intergenic | 55.0% | |
| GACAATGACGGCGGAGAGAA+AGG | - | chr3_1:75830121-75830140 | None:intergenic | 55.0% | |
| AGGTTGCAAGCACAAGCTGC+AGG | + | chr3_1:75830367-75830386 | Msa0375900:CDS | 55.0% | |
| GGTTGCAAGCACAAGCTGCA+GGG | + | chr3_1:75830368-75830387 | Msa0375900:CDS | 55.0% | |
| GTTGCAAGCACAAGCTGCAG+GGG | + | chr3_1:75830369-75830388 | Msa0375900:CDS | 55.0% | |
| ! | CTATGGAGGGGCACAAATGC+TGG | + | chr3_1:75831421-75831440 | Msa0375900:CDS | 55.0% |
| !! | ACCTTTGGTGGCTGGTTCGT+TGG | + | chr3_1:75831661-75831680 | Msa0375900:CDS | 55.0% |
| ! | CAAGTTGGCAAGAAGCCACC+TGG | + | chr3_1:75832416-75832435 | Msa0375900:CDS | 55.0% |
| ACCAACTCGCGGACCAAAAC+CGG | - | chr3_1:75834086-75834105 | None:intergenic | 55.0% | |
| GGGTCGCCGAATATGTGGGA+GGG | - | chr3_1:75829854-75829873 | None:intergenic | 60.0% | |
| TGGGTCGCCGAATATGTGGG+AGG | - | chr3_1:75829855-75829874 | None:intergenic | 60.0% | |
| TCTCCATCATGTACCCGGGC+TGG | + | chr3_1:75831170-75831189 | Msa0375900:CDS | 60.0% | |
| AGTCCAGCCCGGGTACATGA+TGG | - | chr3_1:75831176-75831195 | None:intergenic | 60.0% | |
| TGTTCCATGGAGTCCAGCCC+GGG | - | chr3_1:75831186-75831205 | None:intergenic | 60.0% | |
| CTGTTCCATGGAGTCCAGCC+CGG | - | chr3_1:75831187-75831206 | None:intergenic | 60.0% | |
| ! | GAGGGGCACAAATGCTGGTC+TGG | + | chr3_1:75831426-75831445 | Msa0375900:CDS | 60.0% |
| GCCAACGAACCAGCCACCAA+AGG | - | chr3_1:75831665-75831684 | None:intergenic | 60.0% | |
| TGGTTCGTTGGCACGCTCAC+TGG | + | chr3_1:75831673-75831692 | Msa0375900:CDS | 60.0% | |
| !! | TCGTGTCCTGTGGACTGGCA+TGG | + | chr3_1:75833131-75833150 | Msa0375900:CDS | 60.0% |
| !! | CGTGTCCTGTGGACTGGCAT+GGG | + | chr3_1:75833132-75833151 | Msa0375900:CDS | 60.0% |
| GTTGCAGGAACTCTAGCGGC+TGG | + | chr3_1:75833384-75833403 | Msa0375900:CDS | 60.0% | |
| !! | ACCGGTTTTGGTCCGCGAGT+TGG | + | chr3_1:75834082-75834101 | Msa0375900:CDS | 60.0% |
| ! | TGTACCCGGGCTGGACTCCA+TGG | + | chr3_1:75831179-75831198 | Msa0375900:CDS | 65.0% |
| GTGCACCCATGCCAGTCCAC+AGG | - | chr3_1:75833140-75833159 | None:intergenic | 65.0% | |
| GAACGCGCTTTCTCCGCCGC+CGG | + | chr3_1:75830090-75830109 | Msa0375900:CDS | 70.0% | |
| !! | GGTCCGCGAGTTGGTCGAGC+TGG | + | chr3_1:75834091-75834110 | Msa0375900:CDS | 70.0% |
| GGGCCAGCTCGACCAACTCG+CGG | - | chr3_1:75834097-75834116 | None:intergenic | 70.0% | |
| ! | GGAGAGAAAGGCGGCGCCGG+CGG | - | chr3_1:75830109-75830128 | None:intergenic | 75.0% |
| GGCGGAGAGAAAGGCGGCGC+CGG | - | chr3_1:75830112-75830131 | None:intergenic | 75.0% | |
| GGTCGAGCTGGCCCCTCCGT+TGG | + | chr3_1:75834103-75834122 | Msa0375900:CDS | 75.0% | |
| !!! | GAGAAAGGCGGCGCCGGCGG+CGG | - | chr3_1:75830106-75830125 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 75829773 | 75834561 | 75829773 | ID=Msa0375900;Name=Msa0375900 |
| chr3_1 | mRNA | 75829773 | 75834561 | 75829773 | ID=Msa0375900-mRNA-1;Parent=Msa0375900;Name=Msa0375900-mRNA-1;_AED=0.08;_eAED=0.08;_QI=194|1|1|1|1|1|10|372|394 |
| chr3_1 | exon | 75829773 | 75830161 | 75829773 | ID=Msa0375900-mRNA-1:exon:17827;Parent=Msa0375900-mRNA-1 |
| chr3_1 | exon | 75830364 | 75830453 | 75830364 | ID=Msa0375900-mRNA-1:exon:17828;Parent=Msa0375900-mRNA-1 |
| chr3_1 | exon | 75831149 | 75831277 | 75831149 | ID=Msa0375900-mRNA-1:exon:17829;Parent=Msa0375900-mRNA-1 |
| chr3_1 | exon | 75831406 | 75831465 | 75831406 | ID=Msa0375900-mRNA-1:exon:17830;Parent=Msa0375900-mRNA-1 |
| chr3_1 | exon | 75831572 | 75831742 | 75831572 | ID=Msa0375900-mRNA-1:exon:17831;Parent=Msa0375900-mRNA-1 |
| chr3_1 | exon | 75832401 | 75832503 | 75832401 | ID=Msa0375900-mRNA-1:exon:17832;Parent=Msa0375900-mRNA-1 |
| chr3_1 | exon | 75833121 | 75833212 | 75833121 | ID=Msa0375900-mRNA-1:exon:17833;Parent=Msa0375900-mRNA-1 |
| chr3_1 | exon | 75833300 | 75833452 | 75833300 | ID=Msa0375900-mRNA-1:exon:17834;Parent=Msa0375900-mRNA-1 |
| chr3_1 | exon | 75833721 | 75833779 | 75833721 | ID=Msa0375900-mRNA-1:exon:17835;Parent=Msa0375900-mRNA-1 |
| chr3_1 | exon | 75834057 | 75834561 | 75834057 | ID=Msa0375900-mRNA-1:exon:17836;Parent=Msa0375900-mRNA-1 |
| chr3_1 | five_prime_UTR | 75829773 | 75829966 | 75829773 | ID=Msa0375900-mRNA-1:five_prime_utr;Parent=Msa0375900-mRNA-1 |
| chr3_1 | CDS | 75829967 | 75830161 | 75829967 | ID=Msa0375900-mRNA-1:cds;Parent=Msa0375900-mRNA-1 |
| chr3_1 | CDS | 75830364 | 75830453 | 75830364 | ID=Msa0375900-mRNA-1:cds;Parent=Msa0375900-mRNA-1 |
| chr3_1 | CDS | 75831149 | 75831277 | 75831149 | ID=Msa0375900-mRNA-1:cds;Parent=Msa0375900-mRNA-1 |
| chr3_1 | CDS | 75831406 | 75831465 | 75831406 | ID=Msa0375900-mRNA-1:cds;Parent=Msa0375900-mRNA-1 |
| chr3_1 | CDS | 75831572 | 75831742 | 75831572 | ID=Msa0375900-mRNA-1:cds;Parent=Msa0375900-mRNA-1 |
| chr3_1 | CDS | 75832401 | 75832503 | 75832401 | ID=Msa0375900-mRNA-1:cds;Parent=Msa0375900-mRNA-1 |
| chr3_1 | CDS | 75833121 | 75833212 | 75833121 | ID=Msa0375900-mRNA-1:cds;Parent=Msa0375900-mRNA-1 |
| chr3_1 | CDS | 75833300 | 75833452 | 75833300 | ID=Msa0375900-mRNA-1:cds;Parent=Msa0375900-mRNA-1 |
| chr3_1 | CDS | 75833721 | 75833779 | 75833721 | ID=Msa0375900-mRNA-1:cds;Parent=Msa0375900-mRNA-1 |
| chr3_1 | CDS | 75834057 | 75834189 | 75834057 | ID=Msa0375900-mRNA-1:cds;Parent=Msa0375900-mRNA-1 |
| chr3_1 | three_prime_UTR | 75834190 | 75834561 | 75834190 | ID=Msa0375900-mRNA-1:three_prime_utr;Parent=Msa0375900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
