Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002780 | XP_003602191.1 | 98.223 | 394 | 7 | 0 | 1 | 394 | 1 | 394 | 0.0 | 800 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002780 | sp|Q944H5|MTM1_ARATH | 65.534 | 412 | 118 | 4 | 5 | 394 | 4 | 413 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002780 | G7J698 | 98.223 | 394 | 7 | 0 | 1 | 394 | 1 | 394 | 0.0 | 800 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0372290 | Msa1002780 | 0.805136 | 1.544518e-49 | -8.615850e-47 |
| Msa0375900 | Msa1002780 | 0.968555 | 7.625485e-129 | -8.615850e-47 |
| Msa0420530 | Msa1002780 | 0.819993 | 8.672246e-53 | -8.615850e-47 |
| Msa0466780 | Msa1002780 | 0.815743 | 7.907341e-52 | -8.615850e-47 |
| Msa1002780 | Msa1128110 | 0.810579 | 1.074627e-50 | -8.615850e-47 |
| Msa1002780 | Msa1407680 | 0.972099 | 3.233486e-134 | -8.615850e-47 |
| Msa1002780 | Msa1449760 | 0.969082 | 1.331401e-129 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002780 | MtrunA17_Chr3g0126331 | 98.223 | 394 | 7 | 0 | 1 | 394 | 1 | 394 | 0.0 | 800 |
| Msa1002780 | MtrunA17_Chr7g0275411 | 65.385 | 364 | 101 | 5 | 31 | 394 | 4 | 342 | 1.09e-166 | 470 |
| Msa1002780 | MtrunA17_Chr7g0240341 | 25.000 | 264 | 174 | 4 | 134 | 392 | 75 | 319 | 1.43e-19 | 88.6 |
| Msa1002780 | MtrunA17_Chr4g0008061 | 25.145 | 346 | 189 | 11 | 46 | 386 | 17 | 297 | 6.35e-16 | 77.8 |
| Msa1002780 | MtrunA17_Chr5g0436041 | 25.352 | 284 | 182 | 6 | 110 | 387 | 62 | 321 | 1.29e-15 | 77.4 |
| Msa1002780 | MtrunA17_Chr4g0067231 | 23.269 | 361 | 201 | 11 | 46 | 383 | 14 | 321 | 1.64e-15 | 77.0 |
| Msa1002780 | MtrunA17_Chr7g0241521 | 25.000 | 340 | 191 | 10 | 32 | 370 | 6 | 282 | 2.93e-15 | 75.9 |
| Msa1002780 | MtrunA17_Chr3g0137941 | 25.097 | 259 | 169 | 5 | 128 | 384 | 155 | 390 | 4.56e-15 | 76.3 |
| Msa1002780 | MtrunA17_Chr1g0149111 | 24.809 | 262 | 168 | 6 | 130 | 387 | 174 | 410 | 1.72e-14 | 74.7 |
| Msa1002780 | MtrunA17_Chr3g0135861 | 26.007 | 273 | 179 | 8 | 123 | 384 | 66 | 326 | 1.90e-14 | 73.9 |
| Msa1002780 | MtrunA17_Chr8g0386871 | 26.761 | 284 | 175 | 8 | 106 | 384 | 329 | 584 | 6.35e-14 | 73.6 |
| Msa1002780 | MtrunA17_Chr2g0296061 | 23.596 | 356 | 202 | 12 | 46 | 382 | 15 | 319 | 1.07e-13 | 71.6 |
| Msa1002780 | MtrunA17_Chr4g0063561 | 24.809 | 262 | 165 | 8 | 128 | 384 | 157 | 391 | 3.16e-13 | 70.5 |
| Msa1002780 | MtrunA17_Chr6g0463351 | 25.301 | 249 | 151 | 8 | 125 | 366 | 100 | 320 | 2.43e-12 | 67.8 |
| Msa1002780 | MtrunA17_Chr6g0488081 | 25.632 | 277 | 168 | 10 | 123 | 384 | 50 | 303 | 7.16e-12 | 65.9 |
| Msa1002780 | MtrunA17_Chr8g0385571 | 23.462 | 260 | 176 | 7 | 132 | 388 | 264 | 503 | 2.11e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002780 | AT4G27940.1 | 65.534 | 412 | 118 | 4 | 5 | 394 | 4 | 413 | 0.0 | 541 |
| Msa1002780 | AT2G46320.1 | 62.772 | 368 | 118 | 7 | 29 | 391 | 8 | 361 | 7.34e-147 | 421 |
| Msa1002780 | AT2G46320.3 | 68.872 | 257 | 69 | 4 | 138 | 391 | 14 | 262 | 1.12e-113 | 333 |
| Msa1002780 | AT2G46320.2 | 68.872 | 257 | 69 | 4 | 138 | 391 | 14 | 262 | 1.12e-113 | 333 |
| Msa1002780 | AT2G46320.5 | 68.872 | 257 | 69 | 4 | 138 | 391 | 14 | 262 | 1.12e-113 | 333 |
| Msa1002780 | AT2G46320.4 | 68.837 | 215 | 58 | 3 | 138 | 351 | 14 | 220 | 3.08e-91 | 274 |
| Msa1002780 | AT4G26180.1 | 29.856 | 278 | 168 | 9 | 121 | 388 | 50 | 310 | 2.01e-19 | 89.0 |
| Msa1002780 | AT3G55640.1 | 26.667 | 270 | 173 | 6 | 122 | 385 | 73 | 323 | 4.95e-17 | 82.0 |
| Msa1002780 | AT3G55640.4 | 26.667 | 270 | 173 | 6 | 122 | 385 | 73 | 323 | 4.95e-17 | 82.0 |
| Msa1002780 | AT4G26180.2 | 30.159 | 252 | 149 | 9 | 121 | 362 | 50 | 284 | 2.68e-16 | 79.3 |
| Msa1002780 | AT3G53940.1 | 25.660 | 265 | 156 | 6 | 134 | 384 | 120 | 357 | 1.09e-15 | 78.2 |
| Msa1002780 | AT2G37890.1 | 24.904 | 261 | 165 | 5 | 133 | 384 | 91 | 329 | 2.41e-15 | 77.0 |
| Msa1002780 | AT4G11440.1 | 28.409 | 264 | 149 | 8 | 135 | 388 | 371 | 604 | 5.33e-13 | 70.9 |
| Msa1002780 | AT4G11440.2 | 28.409 | 264 | 149 | 8 | 135 | 388 | 371 | 604 | 5.33e-13 | 70.9 |
| Msa1002780 | AT1G14560.1 | 24.908 | 273 | 181 | 7 | 123 | 384 | 58 | 317 | 7.10e-13 | 69.7 |
| Msa1002780 | AT5G46800.2 | 27.857 | 280 | 175 | 8 | 118 | 388 | 39 | 300 | 7.28e-13 | 69.3 |
| Msa1002780 | AT5G46800.3 | 27.857 | 280 | 175 | 8 | 118 | 388 | 39 | 300 | 7.28e-13 | 69.3 |
| Msa1002780 | AT5G46800.1 | 27.857 | 280 | 175 | 8 | 118 | 388 | 39 | 300 | 7.28e-13 | 69.3 |
| Msa1002780 | AT5G48970.1 | 23.641 | 368 | 212 | 11 | 35 | 381 | 9 | 328 | 8.23e-13 | 69.3 |
| Msa1002780 | AT4G32400.1 | 23.137 | 255 | 175 | 4 | 130 | 384 | 149 | 382 | 1.62e-12 | 68.9 |
| Msa1002780 | AT5G58970.1 | 24.427 | 262 | 175 | 7 | 124 | 384 | 56 | 295 | 2.89e-12 | 67.4 |
| Msa1002780 | AT5G51050.1 | 25.681 | 257 | 168 | 8 | 134 | 388 | 261 | 496 | 3.03e-12 | 68.6 |
| Msa1002780 | AT3G54110.1 | 23.692 | 325 | 185 | 9 | 47 | 370 | 18 | 280 | 8.41e-12 | 66.2 |
| Msa1002780 | AT5G56450.1 | 22.180 | 266 | 189 | 5 | 124 | 388 | 78 | 326 | 9.37e-12 | 66.2 |
| Msa1002780 | AT3G21390.1 | 23.181 | 371 | 209 | 13 | 36 | 382 | 7 | 325 | 1.05e-11 | 65.9 |
| Msa1002780 | AT3G21390.2 | 23.181 | 371 | 209 | 13 | 36 | 382 | 29 | 347 | 1.46e-11 | 65.9 |
| Msa1002780 | AT3G55640.2 | 31.111 | 135 | 85 | 3 | 254 | 384 | 93 | 223 | 3.71e-11 | 63.5 |
| Msa1002780 | AT3G55640.3 | 31.111 | 135 | 85 | 3 | 254 | 384 | 93 | 223 | 3.71e-11 | 63.5 |
| Msa1002780 | AT5G15640.1 | 24.206 | 252 | 163 | 7 | 126 | 365 | 62 | 297 | 5.38e-11 | 63.9 |
| Msa1002780 | AT5G15640.2 | 24.206 | 252 | 163 | 7 | 126 | 365 | 55 | 290 | 7.75e-11 | 63.2 |
Find 135 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTAGGATTATTATGATTT+TGG | 0.113330 | 6_4:+88923521 | None:intergenic |
| TCATCAAATAATGACAAATT+AGG | 0.143139 | 6_4:-88923499 | Msa1002780:CDS |
| TTGTCATTATTTGATGATTT+AGG | 0.214682 | 6_4:+88923505 | None:intergenic |
| CGGAAGCCATCCATGGGTTT+TGG | 0.219669 | 6_4:+88923569 | None:intergenic |
| ATGTTGTTTGCCGGTGATTT+AGG | 0.221266 | 6_4:+88919354 | None:intergenic |
| CACGATGACGATGACTAAAT+TGG | 0.222931 | 6_4:+88923626 | None:intergenic |
| ATAGGACAACCTCCTAATTT+AGG | 0.230238 | 6_4:-88919164 | Msa1002780:three_prime_UTR |
| GTAACAAAATTGACCTCTTT+TGG | 0.248962 | 6_4:+88919109 | None:intergenic |
| TAGAAGAAAACTTCTTAGTT+TGG | 0.301366 | 6_4:-88920214 | Msa1002780:CDS |
| ATTAGGAGGTTGTCCTATAC+TGG | 0.323443 | 6_4:+88919169 | None:intergenic |
| GTCATGTTTCGGTCCAAATA+TGG | 0.324704 | 6_4:-88923127 | Msa1002780:intron |
| TGTTGCAGTTGGAGCACTTT+TGG | 0.326444 | 6_4:+88921888 | None:intergenic |
| TGGTTCGTTGGCACGCTCAC+TGG | 0.333788 | 6_4:-88921845 | Msa1002780:CDS |
| ATGAATCAACGTTCATGAAT+AGG | 0.356954 | 6_4:-88919206 | Msa1002780:three_prime_UTR |
| CATCAAATAATGACAAATTA+GGG | 0.361045 | 6_4:-88923498 | Msa1002780:CDS |
| TGTTGTTTGCCGGTGATTTA+GGG | 0.370918 | 6_4:+88919355 | None:intergenic |
| GCCGGTATATTGAGTGTTCT+TGG | 0.376648 | 6_4:-88920177 | Msa1002780:CDS |
| TACCATTCTCTGCGATTTGT+TGG | 0.379271 | 6_4:-88920341 | Msa1002780:CDS |
| CGAGTTCTGGCAAGTTCAAT+AGG | 0.383953 | 6_4:+88921805 | None:intergenic |
| TATTTCAGGAAGGCTTTACT+AGG | 0.389389 | 6_4:-88922120 | Msa1002780:intron |
| ACCAACTCGCGGACCAAAAC+CGG | 0.390804 | 6_4:+88919433 | None:intergenic |
| TCCTTTGTACCGAAAACAAT+CGG | 0.399803 | 6_4:+88922296 | None:intergenic |
| GAGAAAGGCGGCGCCGGCGG+CGG | 0.401440 | 6_4:+88923456 | None:intergenic |
| AGAAAACTTCTTAGTTTGGT+TGG | 0.405793 | 6_4:-88920210 | Msa1002780:CDS |
| TGCAACACCATATGTACCTT+TGG | 0.413844 | 6_4:-88921872 | Msa1002780:CDS |
| GGCGGAGAGAAAGGCGGCGC+CGG | 0.414062 | 6_4:+88923450 | None:intergenic |
| TTTATTCAAAATTTGCTCTT+GGG | 0.416397 | 6_4:+88919073 | None:intergenic |
| GGAGAGAAAGGCGGCGCCGG+CGG | 0.416947 | 6_4:+88923453 | None:intergenic |
| CTGGTCATGATGTTGTTTGC+CGG | 0.426433 | 6_4:+88919345 | None:intergenic |
| GCTATGATATATTCCGCAAC+TGG | 0.429911 | 6_4:-88921927 | Msa1002780:CDS |
| GAGGGGCACAAATGCTGGTC+TGG | 0.434365 | 6_4:-88922092 | Msa1002780:CDS |
| CTCAGAGATGGAGGCTTGAA+AGG | 0.435489 | 6_4:-88919464 | Msa1002780:intron |
| GGTCCGCGAGTTGGTCGAGC+TGG | 0.437073 | 6_4:-88919425 | Msa1002780:CDS |
| AGGAAGGCTTTACTAGGCTA+TGG | 0.438594 | 6_4:-88922114 | Msa1002780:CDS |
| TATTTGTAAAATTATACAAC+AGG | 0.446386 | 6_4:-88922262 | Msa1002780:intron |
| CTATGGAGGGGCACAAATGC+TGG | 0.448613 | 6_4:-88922097 | Msa1002780:CDS |
| ATCAGTAGAATGTCATGTTT+CGG | 0.450546 | 6_4:-88923138 | Msa1002780:CDS |
| GCTTTGTTGCTGAGAACCTC+TGG | 0.450589 | 6_4:-88919285 | Msa1002780:three_prime_UTR |
| GACAATGACGGCGGAGAGAA+AGG | 0.462597 | 6_4:+88923441 | None:intergenic |
| CCATATGTACCTTTGGTGGC+TGG | 0.470715 | 6_4:-88921865 | Msa1002780:CDS |
| CCAGCCACCAAAGGTACATA+TGG | 0.474362 | 6_4:+88921865 | None:intergenic |
| AGGTTGCAAGCACAAGCTGC+AGG | 0.475586 | 6_4:-88923192 | Msa1002780:CDS |
| CCGAATATGTGGGAGGGAAA+AGG | 0.476013 | 6_4:+88923710 | None:intergenic |
| GGTCGAGCTGGCCCCTCCGT+TGG | 0.479589 | 6_4:-88919413 | Msa1002780:CDS |
| ACCTGGAGTATTCCAGACTT+TGG | 0.480063 | 6_4:-88921085 | Msa1002780:CDS |
| TGTTGTTCGGAAGCCATCCA+TGG | 0.481781 | 6_4:+88923562 | None:intergenic |
| AAACTTCTTAGTTTGGTTGG+AGG | 0.485679 | 6_4:-88920207 | Msa1002780:CDS |
| TCTCAGCAACAAAGCCGCTT+CGG | 0.487852 | 6_4:+88919293 | None:intergenic |
| CTGTTCCATGGAGTCCAGCC+CGG | 0.488086 | 6_4:+88922334 | None:intergenic |
| GAAATGGGTCGCCGAATATG+TGG | 0.488473 | 6_4:+88923699 | None:intergenic |
| TGTTCCATGGAGTCCAGCCC+GGG | 0.495606 | 6_4:+88922335 | None:intergenic |
| GTTGCAGGAACTCTAGCGGC+TGG | 0.498177 | 6_4:-88920132 | Msa1002780:CDS |
| GACAGACACTGATAGAGATC+TGG | 0.502105 | 6_4:-88919761 | Msa1002780:CDS |
| GAACGCGCTTTCTCCGCCGC+CGG | 0.503934 | 6_4:-88923469 | Msa1002780:CDS |
| ACCTTTGGTGGCTGGTTCGT+TGG | 0.504745 | 6_4:-88921857 | Msa1002780:CDS |
| CGTGTCCTGTGGACTGGCAT+GGG | 0.506549 | 6_4:-88920384 | Msa1002780:CDS |
| AGACAACGCCTACCAAAGTC+TGG | 0.507561 | 6_4:+88921073 | None:intergenic |
| GGAGTATTCCAGACTTTGGT+AGG | 0.512210 | 6_4:-88921081 | Msa1002780:CDS |
| TTGAATTGGAGTTTGTTGTT+CGG | 0.514291 | 6_4:+88923549 | None:intergenic |
| CCTTTGTACCGAAAACAATC+GGG | 0.520239 | 6_4:+88922297 | None:intergenic |
| TAAAGTTTGCCCTAAATCAC+CGG | 0.520255 | 6_4:-88919364 | Msa1002780:CDS |
| AGTTATCGTGTCCTGTGGAC+TGG | 0.521637 | 6_4:-88920390 | Msa1002780:CDS |
| CAAGTTGGCAAGAAGCCACC+TGG | 0.523320 | 6_4:-88921102 | Msa1002780:CDS |
| GAAAACATCAGCATTGCACT+TGG | 0.524009 | 6_4:-88919036 | Msa1002780:three_prime_UTR |
| AGGAAAGAAAAGAACGGCGA+TGG | 0.527958 | 6_4:+88923730 | None:intergenic |
| AGAGGACCTTGGCAACATCA+AGG | 0.528433 | 6_4:+88923413 | None:intergenic |
| TCGTGTCCTGTGGACTGGCA+TGG | 0.528693 | 6_4:-88920385 | Msa1002780:CDS |
| AACACCATATGTACCTTTGG+TGG | 0.530531 | 6_4:-88921869 | Msa1002780:CDS |
| GGTACATATGGTGTTGCAGT+TGG | 0.530637 | 6_4:+88921877 | None:intergenic |
| GTTGTTCGGAAGCCATCCAT+GGG | 0.533409 | 6_4:+88923563 | None:intergenic |
| GGAAAGAAAAGAACGGCGAT+GGG | 0.535390 | 6_4:+88923731 | None:intergenic |
| CCATCCTTTCTCAGAGATGG+AGG | 0.535460 | 6_4:-88919473 | Msa1002780:intron |
| TCTCCATCATGTACCCGGGC+TGG | 0.535772 | 6_4:-88922348 | Msa1002780:CDS |
| AATATTTGTGCCCTTGACAT+TGG | 0.536147 | 6_4:+88921050 | None:intergenic |
| ACTTGCCAGAACTCGTATGC+AGG | 0.537143 | 6_4:-88921797 | Msa1002780:intron |
| CGTTGATTCATGATCAGAAA+CGG | 0.537237 | 6_4:+88919218 | None:intergenic |
| CAATCCCCTTGATGTTGCCA+AGG | 0.537891 | 6_4:-88923419 | Msa1002780:intron |
| GACCAACAAATCGCAGAGAA+TGG | 0.538249 | 6_4:+88920339 | None:intergenic |
| AAGGCTTTACTAGGCTATGG+AGG | 0.540792 | 6_4:-88922111 | Msa1002780:CDS |
| TGTACCCGGGCTGGACTCCA+TGG | 0.541126 | 6_4:-88922339 | Msa1002780:CDS |
| ACCAAAGTCTGGAATACTCC+AGG | 0.547236 | 6_4:+88921084 | None:intergenic |
| CGCAGAGAATGGTACATCAC+GGG | 0.547764 | 6_4:+88920350 | None:intergenic |
| GATGTTCTCCATCATGTACC+CGG | 0.548614 | 6_4:-88922353 | Msa1002780:CDS |
| GAGGACCTTGGCAACATCAA+GGG | 0.549765 | 6_4:+88923414 | None:intergenic |
| AGTCCAGCCCGGGTACATGA+TGG | 0.554145 | 6_4:+88922345 | None:intergenic |
| ATTCATGATCAGAAACGGAC+TGG | 0.558004 | 6_4:+88919223 | None:intergenic |
| GTGCACCCATGCCAGTCCAC+AGG | 0.572073 | 6_4:+88920379 | None:intergenic |
| GCCAAGAACACTCAATATAC+CGG | 0.573027 | 6_4:+88920176 | None:intergenic |
| TCAATTCCTCGAACCAGTTG+CGG | 0.573380 | 6_4:+88921914 | None:intergenic |
| AGGCGTTGTCTCCAATGTCA+AGG | 0.575701 | 6_4:-88921061 | Msa1002780:CDS |
| CTCTATCAGTGTCTGTCTCG+TGG | 0.575977 | 6_4:+88919767 | None:intergenic |
| TATATTCCGCAACTGGTTCG+AGG | 0.582284 | 6_4:-88921920 | Msa1002780:CDS |
| GCATTTAAAGAGACTCAAGT+TGG | 0.586081 | 6_4:-88921117 | Msa1002780:CDS |
| TTGGTTGGAGGAGATGATGC+CGG | 0.587114 | 6_4:-88920195 | Msa1002780:CDS |
| CGGCAAACAACATCATGACC+AGG | 0.587737 | 6_4:-88919344 | Msa1002780:exon |
| GGTTGCAAGCACAAGCTGCA+GGG | 0.588434 | 6_4:-88923191 | Msa1002780:CDS |
| TCATGACCAGGTGAATATTG+TGG | 0.590141 | 6_4:-88919332 | Msa1002780:exon |
| GACATAGTGATACTGTTCCA+TGG | 0.593994 | 6_4:+88922322 | None:intergenic |
| GGGAAAAGGAAAGAAAAGAA+CGG | 0.604982 | 6_4:+88923724 | None:intergenic |
| GTTGCAAGCACAAGCTGCAG+GGG | 0.611263 | 6_4:-88923190 | Msa1002780:CDS |
| AAATGGGTCGCCGAATATGT+GGG | 0.612193 | 6_4:+88923700 | None:intergenic |
| GGCGTTGTCTCCAATGTCAA+GGG | 0.612254 | 6_4:-88921060 | Msa1002780:CDS |
| GCCAACGAACCAGCCACCAA+AGG | 0.612619 | 6_4:+88921856 | None:intergenic |
| AGGACCTTGGCAACATCAAG+GGG | 0.617908 | 6_4:+88923415 | None:intergenic |
| GTGCACTTACAACTGTTCGA+TGG | 0.620108 | 6_4:+88921027 | None:intergenic |
| CTTGGCTATGTATACACACA+GGG | 0.621139 | 6_4:-88919018 | Msa1002780:three_prime_UTR |
| CCGAATCCAAAACCCATGGA+TGG | 0.626321 | 6_4:-88923575 | Msa1002780:CDS |
| AAATGAAACAACAATTCCAA+CGG | 0.627429 | 6_4:+88919397 | None:intergenic |
| TGCAAAGTTATCGTGTCCTG+TGG | 0.628434 | 6_4:-88920395 | Msa1002780:CDS |
| GGAATATATCATAGCAAGGA+AGG | 0.628866 | 6_4:+88921935 | None:intergenic |
| GAAACAACAATTCCAACGGA+GGG | 0.630162 | 6_4:+88919401 | None:intergenic |
| TCGCAGAGAATGGTACATCA+CGG | 0.630194 | 6_4:+88920349 | None:intergenic |
| AGGCTTTACTAGGCTATGGA+GGG | 0.631179 | 6_4:-88922110 | Msa1002780:CDS |
| TTGCGGAATATATCATAGCA+AGG | 0.637280 | 6_4:+88921931 | None:intergenic |
| ATGTTCTCCATCATGTACCC+GGG | 0.637756 | 6_4:-88922352 | Msa1002780:CDS |
| AAATATCCACAATATTCACC+TGG | 0.641051 | 6_4:+88919326 | None:intergenic |
| AGACACTGATAGAGATCTGG+AGG | 0.643646 | 6_4:-88919758 | Msa1002780:intron |
| ATCAAGGGGATTGACAATGA+CGG | 0.647324 | 6_4:+88923429 | None:intergenic |
| GGGTCGCCGAATATGTGGGA+GGG | 0.649577 | 6_4:+88923704 | None:intergenic |
| TGAAACAACAATTCCAACGG+AGG | 0.657016 | 6_4:+88919400 | None:intergenic |
| CAGACCGAATCCAAAACCCA+TGG | 0.657251 | 6_4:-88923579 | Msa1002780:CDS |
| ACTTGGCTATGTATACACAC+AGG | 0.657301 | 6_4:-88919019 | Msa1002780:three_prime_UTR |
| GGCTTTACTAGGCTATGGAG+GGG | 0.661317 | 6_4:-88922109 | Msa1002780:CDS |
| ACTACTATTGTCAACAAACG+TGG | 0.663563 | 6_4:-88923791 | None:intergenic |
| AAACAACAATTCCAACGGAG+GGG | 0.665573 | 6_4:+88919402 | None:intergenic |
| TCATCGTGGTAGTTAAACAA+TGG | 0.666779 | 6_4:-88923611 | Msa1002780:exon |
| TGGGTCGCCGAATATGTGGG+AGG | 0.669378 | 6_4:+88923703 | None:intergenic |
| GGGCCAGCTCGACCAACTCG+CGG | 0.675233 | 6_4:+88919422 | None:intergenic |
| CAATTTAGTCATCGTCATCG+TGG | 0.681226 | 6_4:-88923625 | Msa1002780:five_prime_UTR |
| AATGACGGCGGAGAGAAAGG+CGG | 0.683197 | 6_4:+88923444 | None:intergenic |
| ACTAGCAGTGCAGTATCCAG+AGG | 0.695443 | 6_4:+88919269 | None:intergenic |
| TTGTACCGAAAACAATCGGG+AGG | 0.703695 | 6_4:+88922300 | None:intergenic |
| CTACTGATGAGATTACTGAG+AGG | 0.705135 | 6_4:+88923153 | None:intergenic |
| AAGGGGATTGACAATGACGG+CGG | 0.721836 | 6_4:+88923432 | None:intergenic |
| AAAGTCTGGAATACTCCAGG+TGG | 0.725173 | 6_4:+88921087 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAATTAAAAAAAAGT+GGG | + | chr6_4:88919379-88919398 | None:intergenic | 10.0% |
| !! | AAAATGAAATTAAAAAAAAG+TGG | + | chr6_4:88919380-88919399 | None:intergenic | 10.0% |
| !! | AAAAATTTCAATTAAGATAA+TGG | - | chr6_4:88920030-88920049 | Msa1002780:intron | 10.0% |
| !! | AAAATTTCAATTAAGATAAT+GGG | - | chr6_4:88920031-88920050 | Msa1002780:intron | 10.0% |
| !! | AAGAATAAAAGAAAATAATT+CGG | + | chr6_4:88921002-88921021 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTAACTGA+TGG | - | chr6_4:88921272-88921291 | Msa1002780:intron | 10.0% |
| !!! | GTATAAAAAAGATAATTTTA+AGG | + | chr6_4:88921383-88921402 | None:intergenic | 10.0% |
| !!! | TGAATAAAATTTTAGTTATT+TGG | - | chr6_4:88923697-88923716 | Msa1002780:five_prime_UTR | 10.0% |
| !!! | ATTTAGGATTATTATGATTT+TGG | + | chr6_4:88919237-88919256 | None:intergenic | 15.0% |
| !! | AAATTTCAATTAAGATAATG+GGG | - | chr6_4:88920032-88920051 | Msa1002780:intron | 15.0% |
| !! | TATTTGTAAAATTATACAAC+AGG | - | chr6_4:88920493-88920512 | Msa1002780:intron | 15.0% |
| !!! | AAAAATCTTTTGATTTTTTC+TGG | - | chr6_4:88921330-88921349 | Msa1002780:intron | 15.0% |
| !!! | AAAATCTTTTGATTTTTTCT+GGG | - | chr6_4:88921331-88921350 | Msa1002780:intron | 15.0% |
| !!! | TTTTTTATCTCTTTTTTTTG+TGG | + | chr6_4:88921762-88921781 | None:intergenic | 15.0% |
| !! | AAAAAATTAATGTACATTGA+AGG | - | chr6_4:88921778-88921797 | Msa1002780:intron | 15.0% |
| !! | AATGAACTGATAATTTAAAT+AGG | - | chr6_4:88922045-88922064 | Msa1002780:intron | 15.0% |
| !!! | ATTTTTAAAATTCATAGGAA+TGG | - | chr6_4:88922099-88922118 | Msa1002780:CDS | 15.0% |
| !! | TGAAAAGAAAAAAAAAATAC+AGG | + | chr6_4:88922730-88922749 | None:intergenic | 15.0% |
| !! | AAAAAAAAAATAACCAGTAT+AGG | - | chr6_4:88923573-88923592 | Msa1002780:CDS | 15.0% |
| !!! | TGATTTTGGATAATTTGAAT+TGG | + | chr6_4:88919223-88919242 | None:intergenic | 20.0% |
| !!! | TTGTCATTATTTGATGATTT+AGG | + | chr6_4:88919253-88919272 | None:intergenic | 20.0% |
| !! | TCATCAAATAATGACAAATT+AGG | - | chr6_4:88919256-88919275 | Msa1002780:three_prime_UTR | 20.0% |
| !! | CATCAAATAATGACAAATTA+GGG | - | chr6_4:88919257-88919276 | Msa1002780:three_prime_UTR | 20.0% |
| !!! | TCAATATTTAGCTTTATTGT+TGG | - | chr6_4:88919721-88919740 | Msa1002780:intron | 20.0% |
| !! | TTGGTAAAAAATACTTATAG+TGG | - | chr6_4:88919771-88919790 | Msa1002780:CDS | 20.0% |
| !! | TATGTAAATAACAACTAGAT+TGG | + | chr6_4:88920294-88920313 | None:intergenic | 20.0% |
| !! | TCTGAAAAACAATATTAGAA+AGG | + | chr6_4:88920367-88920386 | None:intergenic | 20.0% |
| !! | TATTATAGAATATACGTACT+TGG | - | chr6_4:88920528-88920547 | Msa1002780:intron | 20.0% |
| !! | AATTAAACAGTGATAAATCA+TGG | + | chr6_4:88921198-88921217 | None:intergenic | 20.0% |
| !! | TATTCAAATTATGATGATTG+TGG | - | chr6_4:88921234-88921253 | Msa1002780:intron | 20.0% |
| !! | ATTTATTCAATTGATCATGT+TGG | - | chr6_4:88921442-88921461 | Msa1002780:intron | 20.0% |
| !!! | AATTTTAAAATTTGTCGAGT+TGG | - | chr6_4:88921836-88921855 | Msa1002780:CDS | 20.0% |
| !!! | CTATTTTGATAATCAATTGT+GGG | - | chr6_4:88922218-88922237 | Msa1002780:intron | 20.0% |
| !!! | ATAAATTTAAAACCTAGCAA+AGG | - | chr6_4:88922298-88922317 | Msa1002780:CDS | 20.0% |
| !!! | TTTTTCTTTTCAAGTTTCAA+AGG | - | chr6_4:88922738-88922757 | Msa1002780:intron | 20.0% |
| !!! | TTTTCTTTTCAAGTTTCAAA+GGG | - | chr6_4:88922739-88922758 | Msa1002780:intron | 20.0% |
| !! | TATCAATATAGTGATATAAC+TGG | - | chr6_4:88923226-88923245 | Msa1002780:intron | 20.0% |
| !!! | TTTATTCAAAATTTGCTCTT+GGG | + | chr6_4:88923685-88923704 | None:intergenic | 20.0% |
| !!! | TTTTATTCAAAATTTGCTCT+TGG | + | chr6_4:88923686-88923705 | None:intergenic | 20.0% |
| ! | AGAAAAATGCGAAATGAAAT+GGG | + | chr6_4:88919074-88919093 | None:intergenic | 25.0% |
| ! | AATTAAAAAAAAGTGGGAAG+AGG | + | chr6_4:88919373-88919392 | None:intergenic | 25.0% |
| ! | GCGAATATGAAATAATCAAA+AGG | + | chr6_4:88919421-88919440 | None:intergenic | 25.0% |
| !! | TTTTCTTCATTTATCAGACA+AGG | - | chr6_4:88919543-88919562 | Msa1002780:intron | 25.0% |
| ! | TTGTCATAAAAGACTGAAAA+GGG | + | chr6_4:88919673-88919692 | None:intergenic | 25.0% |
| ! | ATTGTCATAAAAGACTGAAA+AGG | + | chr6_4:88919674-88919693 | None:intergenic | 25.0% |
| !! | GAAAATTCTGTCTTTTTACA+AGG | - | chr6_4:88920320-88920339 | Msa1002780:intron | 25.0% |
| ! | TGTAAAATTATACAACAGGT+TGG | - | chr6_4:88920497-88920516 | Msa1002780:intron | 25.0% |
| ! | ATGTGAACATATAAAAGAAC+AGG | + | chr6_4:88920786-88920805 | None:intergenic | 25.0% |
| !! | TTCTTTTATATGTTCACATC+AGG | - | chr6_4:88920787-88920806 | Msa1002780:intron | 25.0% |
| ! | TTATCACTGTTTAATTCCAA+TGG | - | chr6_4:88921202-88921221 | Msa1002780:intron | 25.0% |
| ! | TATCACTGTTTAATTCCAAT+GGG | - | chr6_4:88921203-88921222 | Msa1002780:intron | 25.0% |
| !! | GTATTGCTATGGATTTTATT+TGG | - | chr6_4:88921464-88921483 | Msa1002780:intron | 25.0% |
| ! | TGATTTCTTGATTCTTTAGT+CGG | - | chr6_4:88921512-88921531 | Msa1002780:intron | 25.0% |
| ! | AAACACAGAATATGATAACA+CGG | + | chr6_4:88921553-88921572 | None:intergenic | 25.0% |
| ! | TTAATACAACAACAACAATC+AGG | - | chr6_4:88921988-88922007 | Msa1002780:intron | 25.0% |
| ! | ATTTACATTTCTGATCTCTT+TGG | - | chr6_4:88922173-88922192 | Msa1002780:intron | 25.0% |
| ! | TTGATTATCAAAATAGCCAT+GGG | + | chr6_4:88922214-88922233 | None:intergenic | 25.0% |
| ! | ATTGATTATCAAAATAGCCA+TGG | + | chr6_4:88922215-88922234 | None:intergenic | 25.0% |
| !!! | GCTATTTTGATAATCAATTG+TGG | - | chr6_4:88922217-88922236 | Msa1002780:intron | 25.0% |
| ! | TAGAAGAAAACTTCTTAGTT+TGG | - | chr6_4:88922541-88922560 | Msa1002780:intron | 25.0% |
| !!! | ATTGCGATTTATTTTTTCTC+TGG | - | chr6_4:88922797-88922816 | Msa1002780:intron | 25.0% |
| !!! | TTGCGATTTATTTTTTCTCT+GGG | - | chr6_4:88922798-88922817 | Msa1002780:intron | 25.0% |
| !!! | TTATTTTTTCTCTGGGAAAT+AGG | - | chr6_4:88922805-88922824 | Msa1002780:intron | 25.0% |
| !! | ACTATTTGGAATCCAAATTA+TGG | + | chr6_4:88923027-88923046 | None:intergenic | 25.0% |
| ! | AAATGAAACAACAATTCCAA+CGG | + | chr6_4:88923361-88923380 | None:intergenic | 25.0% |
| !! | AGGTCAATTTTGTTACAATT+GGG | - | chr6_4:88923653-88923672 | Msa1002780:five_prime_UTR | 25.0% |
| GAGAAAAATGCGAAATGAAA+TGG | + | chr6_4:88919075-88919094 | None:intergenic | 30.0% | |
| !!! | CTAAATTGGTTTTGCTTGAT+TGG | + | chr6_4:88919118-88919137 | None:intergenic | 30.0% |
| !! | TTGAATTGGAGTTTGTTGTT+CGG | + | chr6_4:88919209-88919228 | None:intergenic | 30.0% |
| ATCAGTAGAATGTCATGTTT+CGG | - | chr6_4:88919617-88919636 | Msa1002780:intron | 30.0% | |
| AATTCCATCAACTAACGTAT+TGG | + | chr6_4:88919842-88919861 | None:intergenic | 30.0% | |
| !! | TACTATCAGCTATGTTTTAG+AGG | + | chr6_4:88919873-88919892 | None:intergenic | 30.0% |
| ! | TTCAAGCACTAATTTTACCA+TGG | + | chr6_4:88919918-88919937 | None:intergenic | 30.0% |
| !! | TAAGATAATGGGGATAAAAG+TGG | - | chr6_4:88920042-88920061 | Msa1002780:intron | 30.0% |
| !! | AAGATAATGGGGATAAAAGT+GGG | - | chr6_4:88920043-88920062 | Msa1002780:intron | 30.0% |
| TTGAAAACAATCCCACATTA+CGG | + | chr6_4:88920231-88920250 | None:intergenic | 30.0% | |
| GAAAGGTCAAATTAATTGCT+CGG | + | chr6_4:88920350-88920369 | None:intergenic | 30.0% | |
| ATAGAATATACGTACTTGGA+CGG | - | chr6_4:88920532-88920551 | Msa1002780:intron | 30.0% | |
| !! | TGATTTGCTGTTTCAAGTAT+TGG | - | chr6_4:88920727-88920746 | Msa1002780:intron | 30.0% |
| TTTATATGTTCACATCAGGT+CGG | - | chr6_4:88920791-88920810 | Msa1002780:intron | 30.0% | |
| ATACACGGATTCAAAAAACA+TGG | + | chr6_4:88921058-88921077 | None:intergenic | 30.0% | |
| TTAGTTAAAGAACTGCATTG+TGG | - | chr6_4:88921304-88921323 | Msa1002780:intron | 30.0% | |
| TATATTCACTACAATTCACG+TGG | - | chr6_4:88921404-88921423 | Msa1002780:intron | 30.0% | |
| TCAAAAGCTGAAAAACACTA+GGG | + | chr6_4:88921495-88921514 | None:intergenic | 30.0% | |
| ATCAAAAGCTGAAAAACACT+AGG | + | chr6_4:88921496-88921515 | None:intergenic | 30.0% | |
| AACACAGAATATGATAACAC+GGG | + | chr6_4:88921552-88921571 | None:intergenic | 30.0% | |
| GCTAAATCCAATTGTTCATT+CGG | + | chr6_4:88921965-88921984 | None:intergenic | 30.0% | |
| TTCTATATGTCATGCTTGTA+TGG | - | chr6_4:88922140-88922159 | Msa1002780:intron | 30.0% | |
| !! | ATCTCTTTGGTTTGATTCTA+CGG | - | chr6_4:88922186-88922205 | Msa1002780:intron | 30.0% |
| ! | CCTTAATAAAAGGATTTGGT+AGG | + | chr6_4:88922463-88922482 | None:intergenic | 30.0% |
| ! | CCTACCAAATCCTTTTATTA+AGG | - | chr6_4:88922460-88922479 | Msa1002780:intron | 30.0% |
| GACTCCTTAATAAAAGGATT+TGG | + | chr6_4:88922467-88922486 | None:intergenic | 30.0% | |
| ! | GAAATCGACTCCTTAATAAA+AGG | + | chr6_4:88922473-88922492 | None:intergenic | 30.0% |
| ! | AGAAAACTTCTTAGTTTGGT+TGG | - | chr6_4:88922545-88922564 | Msa1002780:intron | 30.0% |
| ! | AGATAGAGGTTTGTTTCATT+AGG | - | chr6_4:88922684-88922703 | Msa1002780:intron | 30.0% |
| !!! | TGTTTCATTAGGTTTTGAGT+CGG | - | chr6_4:88922695-88922714 | Msa1002780:intron | 30.0% |
| !!! | TTTTCAAGTTTCAAAGGGAA+AGG | - | chr6_4:88922744-88922763 | Msa1002780:intron | 30.0% |
| ! | TCTGCAAAATGTTTTGTAGA+TGG | - | chr6_4:88922941-88922960 | Msa1002780:intron | 30.0% |
| TCAATTATATGTCGCATAGA+TGG | + | chr6_4:88923129-88923148 | None:intergenic | 30.0% | |
| AAATATCCACAATATTCACC+TGG | + | chr6_4:88923432-88923451 | None:intergenic | 30.0% | |
| !! | ATTTTTGTTTATTGCCGAAG+CGG | - | chr6_4:88923448-88923467 | Msa1002780:CDS | 30.0% |
| ATGAATCAACGTTCATGAAT+AGG | - | chr6_4:88923549-88923568 | Msa1002780:CDS | 30.0% | |
| AAGGCTCAAAAACCTAAATT+AGG | + | chr6_4:88923606-88923625 | None:intergenic | 30.0% | |
| !! | TTTAGGTTTTTGAGCCTTTT+TGG | - | chr6_4:88923608-88923627 | Msa1002780:exon | 30.0% |
| !! | TTAGGTTTTTGAGCCTTTTT+GGG | - | chr6_4:88923609-88923628 | Msa1002780:exon | 30.0% |
| ! | GTAACAAAATTGACCTCTTT+TGG | + | chr6_4:88923649-88923668 | None:intergenic | 30.0% |
| ! | GAGGTCAATTTTGTTACAAT+TGG | - | chr6_4:88923652-88923671 | Msa1002780:five_prime_UTR | 30.0% |
| GGGAAAAGGAAAGAAAAGAA+CGG | + | chr6_4:88919034-88919053 | None:intergenic | 35.0% | |
| TCATCGTGGTAGTTAAACAA+TGG | - | chr6_4:88919144-88919163 | Msa1002780:three_prime_UTR | 35.0% | |
| GGACAAAAACGTACCATATT+TGG | + | chr6_4:88919644-88919663 | None:intergenic | 35.0% | |
| AAAGACTGAAAAGGGATGAA+AGG | + | chr6_4:88919665-88919684 | None:intergenic | 35.0% | |
| TTGTTGCCTTGATTGAACTA+CGG | - | chr6_4:88919696-88919715 | Msa1002780:intron | 35.0% | |
| TTGATACCGTAGTTCAATCA+AGG | + | chr6_4:88919705-88919724 | None:intergenic | 35.0% | |
| CAAACTATGTAGACTCTGTT+TGG | - | chr6_4:88919752-88919771 | Msa1002780:intron | 35.0% | |
| ATAGCCAATACGTTAGTTGA+TGG | - | chr6_4:88919835-88919854 | Msa1002780:intron | 35.0% | |
| !! | CAGATAAGTAAGTTGATCCA+TGG | - | chr6_4:88919898-88919917 | Msa1002780:intron | 35.0% |
| !! | AGATAATGGGGATAAAAGTG+GGG | - | chr6_4:88920044-88920063 | Msa1002780:intron | 35.0% |
| AAACGCTATAAGTTTGTGAG+AGG | - | chr6_4:88920122-88920141 | Msa1002780:CDS | 35.0% | |
| AGAGGATGACCATTACTAAA+CGG | - | chr6_4:88920140-88920159 | Msa1002780:CDS | 35.0% | |
| CTCGTATAACCGTTTAGTAA+TGG | + | chr6_4:88920152-88920171 | None:intergenic | 35.0% | |
| TCCTTTGTACCGAAAACAAT+CGG | + | chr6_4:88920462-88920481 | None:intergenic | 35.0% | |
| TTTGTTAATCAATGCCAGAG+TGG | - | chr6_4:88920608-88920627 | Msa1002780:intron | 35.0% | |
| TCCTGAAATAAATACCACTC+TGG | + | chr6_4:88920625-88920644 | None:intergenic | 35.0% | |
| GAGTGGTATTTATTTCAGGA+AGG | - | chr6_4:88920625-88920644 | Msa1002780:intron | 35.0% | |
| TATTTCAGGAAGGCTTTACT+AGG | - | chr6_4:88920635-88920654 | Msa1002780:intron | 35.0% | |
| GACATTACATAATGAGACCA+CGG | - | chr6_4:88920749-88920768 | Msa1002780:intron | 35.0% | |
| GGAATATATCATAGCAAGGA+AGG | + | chr6_4:88920823-88920842 | None:intergenic | 35.0% | |
| TTGCGGAATATATCATAGCA+AGG | + | chr6_4:88920827-88920846 | None:intergenic | 35.0% | |
| !! | ACAGTTAACTTGCTCATACA+CGG | + | chr6_4:88921073-88921092 | None:intergenic | 35.0% |
| AAAATAAAACATGCACCCTC+AGG | + | chr6_4:88921138-88921157 | None:intergenic | 35.0% | |
| TGATCATGTTGGTATTGCTA+TGG | - | chr6_4:88921453-88921472 | Msa1002780:intron | 35.0% | |
| TGTGGAATAGGAATTATAGC+TGG | + | chr6_4:88921577-88921596 | None:intergenic | 35.0% | |
| ATAATTCCTATTCCACAGTC+TGG | - | chr6_4:88921580-88921599 | Msa1002780:intron | 35.0% | |
| AAAAATCCAGACTGTGGAAT+AGG | + | chr6_4:88921589-88921608 | None:intergenic | 35.0% | |
| ! | TCTGGATTTTTACTGGTGTT+TGG | - | chr6_4:88921598-88921617 | Msa1002780:intron | 35.0% |
| TTTACTGGTGTTTGGATCTT+TGG | - | chr6_4:88921606-88921625 | Msa1002780:intron | 35.0% | |
| !! | TTTGGATCTTTGGTTTGTGT+AGG | - | chr6_4:88921616-88921635 | Msa1002780:intron | 35.0% |
| GCATTTAAAGAGACTCAAGT+TGG | - | chr6_4:88921638-88921657 | Msa1002780:intron | 35.0% | |
| AATATTTGTGCCCTTGACAT+TGG | + | chr6_4:88921708-88921727 | None:intergenic | 35.0% | |
| !! | TTAAAATTTGTCGAGTTGGC+TGG | - | chr6_4:88921840-88921859 | Msa1002780:CDS | 35.0% |
| ! | TTTTAGGCCGAATGAACAAT+TGG | - | chr6_4:88921955-88921974 | Msa1002780:intron | 35.0% |
| ! | AAACTTCTTAGTTTGGTTGG+AGG | - | chr6_4:88922548-88922567 | Msa1002780:intron | 35.0% |
| TAGATGTTGCAAAAACTCGT+AGG | - | chr6_4:88922660-88922679 | Msa1002780:intron | 35.0% | |
| TAAACTCAAGCATAAAAGCG+CGG | + | chr6_4:88923059-88923078 | None:intergenic | 35.0% | |
| ! | AGAAATTCACTTAGAGCACT+AGG | + | chr6_4:88923086-88923105 | None:intergenic | 35.0% |
| CTAGATGACATTAGTTCAAG+AGG | + | chr6_4:88923188-88923207 | None:intergenic | 35.0% | |
| CTCTTGAACTAATGTCATCT+AGG | - | chr6_4:88923186-88923205 | Msa1002780:CDS | 35.0% | |
| !!! | AAAGGACTTTTTACCGGTTT+TGG | - | chr6_4:88923309-88923328 | Msa1002780:intron | 35.0% |
| TAAAGTTTGCCCTAAATCAC+CGG | - | chr6_4:88923391-88923410 | Msa1002780:intron | 35.0% | |
| !!! | CTGCTAGTTTTTTGATGGAA+AGG | - | chr6_4:88923501-88923520 | Msa1002780:CDS | 35.0% |
| !! | CGTTGATTCATGATCAGAAA+CGG | + | chr6_4:88923540-88923559 | None:intergenic | 35.0% |
| ATAGGACAACCTCCTAATTT+AGG | - | chr6_4:88923591-88923610 | Msa1002780:CDS | 35.0% | |
| GCTCAAAAACCTAAATTAGG+AGG | + | chr6_4:88923603-88923622 | None:intergenic | 35.0% | |
| CAAAGGCAAAAAACCCAAAA+AGG | + | chr6_4:88923625-88923644 | None:intergenic | 35.0% | |
| ! | TTTTTGCCTTTGACCAAAAG+AGG | - | chr6_4:88923633-88923652 | Msa1002780:five_prime_UTR | 35.0% |
| ! | AATTGACCTCTTTTGGTCAA+AGG | + | chr6_4:88923642-88923661 | None:intergenic | 35.0% |
| CACGATGACGATGACTAAAT+TGG | + | chr6_4:88919132-88919151 | None:intergenic | 40.0% | |
| CAATTTAGTCATCGTCATCG+TGG | - | chr6_4:88919130-88919149 | Msa1002780:three_prime_UTR | 40.0% | |
| ATCAAGGGGATTGACAATGA+CGG | + | chr6_4:88919329-88919348 | None:intergenic | 40.0% | |
| CTACTGATGAGATTACTGAG+AGG | + | chr6_4:88919605-88919624 | None:intergenic | 40.0% | |
| GTCATGTTTCGGTCCAAATA+TGG | - | chr6_4:88919628-88919647 | Msa1002780:intron | 40.0% | |
| ! | ATTTGCTGATGACCTTGTAG+CGG | - | chr6_4:88919812-88919831 | Msa1002780:intron | 40.0% |
| GACATAGTGATACTGTTCCA+TGG | + | chr6_4:88920436-88920455 | None:intergenic | 40.0% | |
| ! | TATGTCCTCCCGATTGTTTT+CGG | - | chr6_4:88920450-88920469 | Msa1002780:intron | 40.0% |
| CCTTTGTACCGAAAACAATC+GGG | + | chr6_4:88920461-88920480 | None:intergenic | 40.0% | |
| ! | TTTTCGGTACAAAGGAACAC+TGG | - | chr6_4:88920466-88920485 | Msa1002780:intron | 40.0% |
| GCCAGAGTGGTATTTATTTC+AGG | - | chr6_4:88920621-88920640 | Msa1002780:intron | 40.0% | |
| TTGACTAGTGAACCTACAGT+TGG | + | chr6_4:88920700-88920719 | None:intergenic | 40.0% | |
| CATAATGAGACCACGGAATT+TGG | - | chr6_4:88920756-88920775 | Msa1002780:intron | 40.0% | |
| GCTATGATATATTCCGCAAC+TGG | - | chr6_4:88920828-88920847 | Msa1002780:intron | 40.0% | |
| TGCAACACCATATGTACCTT+TGG | - | chr6_4:88920883-88920902 | Msa1002780:intron | 40.0% | |
| AACACCATATGTACCTTTGG+TGG | - | chr6_4:88920886-88920905 | Msa1002780:intron | 40.0% | |
| AAAAACCTGCATACGAGTTC+TGG | + | chr6_4:88920966-88920985 | None:intergenic | 40.0% | |
| TAACTGTGACTTAAACAGCG+TGG | + | chr6_4:88921031-88921050 | None:intergenic | 40.0% | |
| GCAAGTTAACTGTCAGTTCA+TGG | - | chr6_4:88921080-88921099 | Msa1002780:CDS | 40.0% | |
| AGCCTTACAGTTACTATTGC+TGG | - | chr6_4:88921111-88921130 | Msa1002780:CDS | 40.0% | |
| GACCAGCAATAGTAACTGTA+AGG | + | chr6_4:88921116-88921135 | None:intergenic | 40.0% | |
| AAATCATGGCAGCAATGACT+TGG | + | chr6_4:88921184-88921203 | None:intergenic | 40.0% | |
| TTGAATACAATGCTGCCCAT+TGG | + | chr6_4:88921221-88921240 | None:intergenic | 40.0% | |
| ! | TCCACAGTCTGGATTTTTAC+TGG | - | chr6_4:88921591-88921610 | Msa1002780:intron | 40.0% |
| ACCAGTAAAAATCCAGACTG+TGG | + | chr6_4:88921595-88921614 | None:intergenic | 40.0% | |
| TTGAAGGAGTCTGCTTACTT+TGG | - | chr6_4:88921794-88921813 | Msa1002780:intron | 40.0% | |
| GCTAAATAACCCCACTTAGT+GGG | + | chr6_4:88922020-88922039 | None:intergenic | 40.0% | |
| AGCTAAATAACCCCACTTAG+TGG | + | chr6_4:88922021-88922040 | None:intergenic | 40.0% | |
| AATCAATTGTGGGACTGACT+AGG | - | chr6_4:88922228-88922247 | Msa1002780:intron | 40.0% | |
| AGAATGCTGATACCTTTGCT+AGG | + | chr6_4:88922313-88922332 | None:intergenic | 40.0% | |
| CACGATAACTTTGCACTGTA+AGG | + | chr6_4:88922355-88922374 | None:intergenic | 40.0% | |
| TACCATTCTCTGCGATTTGT+TGG | - | chr6_4:88922414-88922433 | Msa1002780:intron | 40.0% | |
| GCCAAGAACACTCAATATAC+CGG | + | chr6_4:88922582-88922601 | None:intergenic | 40.0% | |
| !!! | TTTTCAGCTGGTTTTGTTGC+AGG | - | chr6_4:88922608-88922627 | Msa1002780:intron | 40.0% |
| ! | TTTTGTTGCAGGAACTCTAG+CGG | - | chr6_4:88922619-88922638 | Msa1002780:intron | 40.0% |
| ! | CGAGTTTTTGCAACATCTAG+TGG | + | chr6_4:88922659-88922678 | None:intergenic | 40.0% |
| AAAAACTCGTAGGCAGATAG+AGG | - | chr6_4:88922670-88922689 | Msa1002780:intron | 40.0% | |
| TCAAGTTTCAAAGGGAAAGG+AGG | - | chr6_4:88922747-88922766 | Msa1002780:intron | 40.0% | |
| CAAGTTTCAAAGGGAAAGGA+GGG | - | chr6_4:88922748-88922767 | Msa1002780:intron | 40.0% | |
| AAGTTTCAAAGGGAAAGGAG+GGG | - | chr6_4:88922749-88922768 | Msa1002780:intron | 40.0% | |
| ! | TTTCTCTGGGAAATAGGTTG+TGG | - | chr6_4:88922811-88922830 | Msa1002780:intron | 40.0% |
| ! | TTCTCTGGGAAATAGGTTGT+GGG | - | chr6_4:88922812-88922831 | Msa1002780:intron | 40.0% |
| GGAAATAGGTTGTGGGAAAT+AGG | - | chr6_4:88922819-88922838 | Msa1002780:intron | 40.0% | |
| TGCAGATGCATGCATATAGA+AGG | + | chr6_4:88922896-88922915 | None:intergenic | 40.0% | |
| TATGCATGCATCTGCACATT+TGG | - | chr6_4:88922900-88922919 | Msa1002780:intron | 40.0% | |
| ! | TCTGGAGGTATGCCATAATT+TGG | - | chr6_4:88923012-88923031 | Msa1002780:intron | 40.0% |
| CGCGGATAAAGTCAACTATT+TGG | + | chr6_4:88923041-88923060 | None:intergenic | 40.0% | |
| TTACCATCCTTTCTCAGAGA+TGG | - | chr6_4:88923279-88923298 | Msa1002780:intron | 40.0% | |
| ! | GGCTTGAAAGGACTTTTTAC+CGG | - | chr6_4:88923303-88923322 | Msa1002780:intron | 40.0% |
| AAACAACAATTCCAACGGAG+GGG | + | chr6_4:88923356-88923375 | None:intergenic | 40.0% | |
| GAAACAACAATTCCAACGGA+GGG | + | chr6_4:88923357-88923376 | None:intergenic | 40.0% | |
| TGAAACAACAATTCCAACGG+AGG | + | chr6_4:88923358-88923377 | None:intergenic | 40.0% | |
| ! | TGTTGTTTGCCGGTGATTTA+GGG | + | chr6_4:88923403-88923422 | None:intergenic | 40.0% |
| ! | ATGTTGTTTGCCGGTGATTT+AGG | + | chr6_4:88923404-88923423 | None:intergenic | 40.0% |
| TCATGACCAGGTGAATATTG+TGG | - | chr6_4:88923423-88923442 | Msa1002780:CDS | 40.0% | |
| !!! | CTGCACTGCTAGTTTTTTGA+TGG | - | chr6_4:88923496-88923515 | Msa1002780:CDS | 40.0% |
| ATTCATGATCAGAAACGGAC+TGG | + | chr6_4:88923535-88923554 | None:intergenic | 40.0% | |
| ATTAGGAGGTTGTCCTATAC+TGG | + | chr6_4:88923589-88923608 | None:intergenic | 40.0% | |
| GAAAACATCAGCATTGCACT+TGG | - | chr6_4:88923719-88923738 | Msa1002780:five_prime_UTR | 40.0% | |
| ACTTGGCTATGTATACACAC+AGG | - | chr6_4:88923736-88923755 | Msa1002780:five_prime_UTR | 40.0% | |
| CTTGGCTATGTATACACACA+GGG | - | chr6_4:88923737-88923756 | Msa1002780:five_prime_UTR | 40.0% | |
| GGAAAGAAAAGAACGGCGAT+GGG | + | chr6_4:88919027-88919046 | None:intergenic | 45.0% | |
| AGGAAAGAAAAGAACGGCGA+TGG | + | chr6_4:88919028-88919047 | None:intergenic | 45.0% | |
| ! | CCTTTTCCCTCCCACATATT+CGG | - | chr6_4:88919045-88919064 | Msa1002780:three_prime_UTR | 45.0% |
| AAATGGGTCGCCGAATATGT+GGG | + | chr6_4:88919058-88919077 | None:intergenic | 45.0% | |
| !!! | CCATCCATGGGTTTTGGATT+CGG | + | chr6_4:88919183-88919202 | None:intergenic | 45.0% |
| AAGAGGAAGAAAGAGGACCT+TGG | + | chr6_4:88919356-88919375 | None:intergenic | 45.0% | |
| AAGTGGGAAGAGGAAGAAAG+AGG | + | chr6_4:88919363-88919382 | None:intergenic | 45.0% | |
| TGCATCTCAAGAAACGCTAC+AGG | - | chr6_4:88920090-88920109 | Msa1002780:CDS | 45.0% | |
| ! | AGCTGCTAGCTTATAGCAGA+TGG | + | chr6_4:88920190-88920209 | None:intergenic | 45.0% |
| TCTGCTATAAGCTAGCAGCT+TGG | - | chr6_4:88920190-88920209 | Msa1002780:CDS | 45.0% | |
| ! | CATTACGGCTCTGTTTTGCA+AGG | + | chr6_4:88920216-88920235 | None:intergenic | 45.0% |
| TGCAAAACAGAGCCGTAATG+TGG | - | chr6_4:88920216-88920235 | Msa1002780:CDS | 45.0% | |
| GCAAAACAGAGCCGTAATGT+GGG | - | chr6_4:88920217-88920236 | Msa1002780:CDS | 45.0% | |
| GATGTTCTCCATCATGTACC+CGG | - | chr6_4:88920402-88920421 | Msa1002780:intron | 45.0% | |
| ATGTTCTCCATCATGTACCC+GGG | - | chr6_4:88920403-88920422 | Msa1002780:intron | 45.0% | |
| TTGTACCGAAAACAATCGGG+AGG | + | chr6_4:88920458-88920477 | None:intergenic | 45.0% | |
| ! | CCCGATTGTTTTCGGTACAA+AGG | - | chr6_4:88920458-88920477 | Msa1002780:intron | 45.0% |
| AGGAAGGCTTTACTAGGCTA+TGG | - | chr6_4:88920641-88920660 | Msa1002780:intron | 45.0% | |
| AAGGCTTTACTAGGCTATGG+AGG | - | chr6_4:88920644-88920663 | Msa1002780:intron | 45.0% | |
| AGGCTTTACTAGGCTATGGA+GGG | - | chr6_4:88920645-88920664 | Msa1002780:intron | 45.0% | |
| !! | TATATTCCGCAACTGGTTCG+AGG | - | chr6_4:88920835-88920854 | Msa1002780:intron | 45.0% |
| TCAATTCCTCGAACCAGTTG+CGG | + | chr6_4:88920844-88920863 | None:intergenic | 45.0% | |
| !! | TGTTGCAGTTGGAGCACTTT+TGG | + | chr6_4:88920870-88920889 | None:intergenic | 45.0% |
| !! | GGTACATATGGTGTTGCAGT+TGG | + | chr6_4:88920881-88920900 | None:intergenic | 45.0% |
| ! | CGAGTTCTGGCAAGTTCAAT+AGG | + | chr6_4:88920953-88920972 | None:intergenic | 45.0% |
| AGTTACTATTGCTGGTCCTG+AGG | - | chr6_4:88921119-88921138 | Msa1002780:CDS | 45.0% | |
| GTTACTATTGCTGGTCCTGA+GGG | - | chr6_4:88921120-88921139 | Msa1002780:CDS | 45.0% | |
| ! | AAAGTCTGGAATACTCCAGG+TGG | + | chr6_4:88921671-88921690 | None:intergenic | 45.0% |
| ! | ACCTGGAGTATTCCAGACTT+TGG | - | chr6_4:88921670-88921689 | Msa1002780:intron | 45.0% |
| ! | ACCAAAGTCTGGAATACTCC+AGG | + | chr6_4:88921674-88921693 | None:intergenic | 45.0% |
| ! | GGAGTATTCCAGACTTTGGT+AGG | - | chr6_4:88921674-88921693 | Msa1002780:intron | 45.0% |
| GTGCACTTACAACTGTTCGA+TGG | + | chr6_4:88921731-88921750 | None:intergenic | 45.0% | |
| TAACCCCACTTAGTGGGATA+AGG | + | chr6_4:88922014-88922033 | None:intergenic | 45.0% | |
| TGCAAAGTTATCGTGTCCTG+TGG | - | chr6_4:88922360-88922379 | Msa1002780:CDS | 45.0% | |
| TCGCAGAGAATGGTACATCA+CGG | + | chr6_4:88922409-88922428 | None:intergenic | 45.0% | |
| GACCAACAAATCGCAGAGAA+TGG | + | chr6_4:88922419-88922438 | None:intergenic | 45.0% | |
| ! | GGATTTGGTAGGAAACTCAC+AGG | + | chr6_4:88922452-88922471 | None:intergenic | 45.0% |
| GCCGGTATATTGAGTGTTCT+TGG | - | chr6_4:88922578-88922597 | Msa1002780:intron | 45.0% | |
| !! | CTTGGCGCAAATTTTTCAGC+TGG | - | chr6_4:88922596-88922615 | Msa1002780:intron | 45.0% |
| GACAGACACTGATAGAGATC+TGG | - | chr6_4:88922994-88923013 | Msa1002780:intron | 45.0% | |
| AGACACTGATAGAGATCTGG+AGG | - | chr6_4:88922997-88923016 | Msa1002780:intron | 45.0% | |
| ! | CTGGTCATGATGTTGTTTGC+CGG | + | chr6_4:88923413-88923432 | None:intergenic | 45.0% |
| !!! | TATAAAAAAGATAATTTTAA+GGG | + | chr6_4:88921382-88921401 | None:intergenic | 5.0% |
| !!! | ATTGTTAAAATATTAATTTT+AGG | - | chr6_4:88921939-88921958 | Msa1002780:CDS | 5.0% |
| !!! | TTTTAATTTTTAAAATTCAT+AGG | - | chr6_4:88922094-88922113 | Msa1002780:CDS | 5.0% |
| CCGAATATGTGGGAGGGAAA+AGG | + | chr6_4:88919048-88919067 | None:intergenic | 50.0% | |
| GAAATGGGTCGCCGAATATG+TGG | + | chr6_4:88919059-88919078 | None:intergenic | 50.0% | |
| CAGACCGAATCCAAAACCCA+TGG | - | chr6_4:88919176-88919195 | Msa1002780:three_prime_UTR | 50.0% | |
| CCGAATCCAAAACCCATGGA+TGG | - | chr6_4:88919180-88919199 | Msa1002780:three_prime_UTR | 50.0% | |
| GTTGTTCGGAAGCCATCCAT+GGG | + | chr6_4:88919195-88919214 | None:intergenic | 50.0% | |
| TGTTGTTCGGAAGCCATCCA+TGG | + | chr6_4:88919196-88919215 | None:intergenic | 50.0% | |
| AAGGGGATTGACAATGACGG+CGG | + | chr6_4:88919326-88919345 | None:intergenic | 50.0% | |
| CAATCCCCTTGATGTTGCCA+AGG | - | chr6_4:88919336-88919355 | Msa1002780:exon | 50.0% | |
| AGGACCTTGGCAACATCAAG+GGG | + | chr6_4:88919343-88919362 | None:intergenic | 50.0% | |
| GAGGACCTTGGCAACATCAA+GGG | + | chr6_4:88919344-88919363 | None:intergenic | 50.0% | |
| AGAGGACCTTGGCAACATCA+AGG | + | chr6_4:88919345-88919364 | None:intergenic | 50.0% | |
| !! | CGTATTGGCTATCCGCTACA+AGG | + | chr6_4:88919827-88919846 | None:intergenic | 50.0% |
| GGCTTTACTAGGCTATGGAG+GGG | - | chr6_4:88920646-88920665 | Msa1002780:intron | 50.0% | |
| GCTCTTGCAGTACCAACTGT+AGG | - | chr6_4:88920685-88920704 | Msa1002780:intron | 50.0% | |
| AACAGGTCAGCCAAATTCCG+TGG | + | chr6_4:88920769-88920788 | None:intergenic | 50.0% | |
| ! | CCAGCCACCAAAGGTACATA+TGG | + | chr6_4:88920893-88920912 | None:intergenic | 50.0% |
| ! | CCATATGTACCTTTGGTGGC+TGG | - | chr6_4:88920890-88920909 | Msa1002780:intron | 50.0% |
| ACTTGCCAGAACTCGTATGC+AGG | - | chr6_4:88920958-88920977 | Msa1002780:intron | 50.0% | |
| AGACAACGCCTACCAAAGTC+TGG | + | chr6_4:88921685-88921704 | None:intergenic | 50.0% | |
| ! | AGGCGTTGTCTCCAATGTCA+AGG | - | chr6_4:88921694-88921713 | Msa1002780:intron | 50.0% |
| GGCGTTGTCTCCAATGTCAA+GGG | - | chr6_4:88921695-88921714 | Msa1002780:intron | 50.0% | |
| ! | TCAGGCCTTATCCCACTAAG+TGG | - | chr6_4:88922006-88922025 | Msa1002780:intron | 50.0% |
| ! | CAGGCCTTATCCCACTAAGT+GGG | - | chr6_4:88922007-88922026 | Msa1002780:intron | 50.0% |
| ! | AGGCCTTATCCCACTAAGTG+GGG | - | chr6_4:88922008-88922027 | Msa1002780:intron | 50.0% |
| GTTTGATTCTACGGTGCCCA+TGG | - | chr6_4:88922195-88922214 | Msa1002780:intron | 50.0% | |
| AGTTATCGTGTCCTGTGGAC+TGG | - | chr6_4:88922365-88922384 | Msa1002780:CDS | 50.0% | |
| CGCAGAGAATGGTACATCAC+GGG | + | chr6_4:88922408-88922427 | None:intergenic | 50.0% | |
| TTGGTTGGAGGAGATGATGC+CGG | - | chr6_4:88922560-88922579 | Msa1002780:intron | 50.0% | |
| TTTCAAAGGGAAAGGAGGGG+TGG | - | chr6_4:88922752-88922771 | Msa1002780:intron | 50.0% | |
| CTCTATCAGTGTCTGTCTCG+TGG | + | chr6_4:88922991-88923010 | None:intergenic | 50.0% | |
| CGCATAGATGGAGCAGATCA+TGG | + | chr6_4:88923117-88923136 | None:intergenic | 50.0% | |
| ! | CCTCCATCTCTGAGAAAGGA+TGG | + | chr6_4:88923285-88923304 | None:intergenic | 50.0% |
| CCATCCTTTCTCAGAGATGG+AGG | - | chr6_4:88923282-88923301 | Msa1002780:intron | 50.0% | |
| ! | CAAGCCTCCATCTCTGAGAA+AGG | + | chr6_4:88923289-88923308 | None:intergenic | 50.0% |
| CTCAGAGATGGAGGCTTGAA+AGG | - | chr6_4:88923291-88923310 | Msa1002780:intron | 50.0% | |
| CGGCAAACAACATCATGACC+AGG | - | chr6_4:88923411-88923430 | Msa1002780:intron | 50.0% | |
| TCTCAGCAACAAAGCCGCTT+CGG | + | chr6_4:88923465-88923484 | None:intergenic | 50.0% | |
| ! | GCTTTGTTGCTGAGAACCTC+TGG | - | chr6_4:88923470-88923489 | Msa1002780:CDS | 50.0% |
| ACTAGCAGTGCAGTATCCAG+AGG | + | chr6_4:88923489-88923508 | None:intergenic | 50.0% | |
| ! | CGGAAGCCATCCATGGGTTT+TGG | + | chr6_4:88919189-88919208 | None:intergenic | 55.0% |
| AATGACGGCGGAGAGAAAGG+CGG | + | chr6_4:88919314-88919333 | None:intergenic | 55.0% | |
| GACAATGACGGCGGAGAGAA+AGG | + | chr6_4:88919317-88919336 | None:intergenic | 55.0% | |
| AGGTTGCAAGCACAAGCTGC+AGG | - | chr6_4:88919563-88919582 | Msa1002780:intron | 55.0% | |
| GGTTGCAAGCACAAGCTGCA+GGG | - | chr6_4:88919564-88919583 | Msa1002780:intron | 55.0% | |
| GTTGCAAGCACAAGCTGCAG+GGG | - | chr6_4:88919565-88919584 | Msa1002780:intron | 55.0% | |
| ! | CTATGGAGGGGCACAAATGC+TGG | - | chr6_4:88920658-88920677 | Msa1002780:intron | 55.0% |
| !! | ACCTTTGGTGGCTGGTTCGT+TGG | - | chr6_4:88920898-88920917 | Msa1002780:intron | 55.0% |
| ! | CAAGTTGGCAAGAAGCCACC+TGG | - | chr6_4:88921653-88921672 | Msa1002780:intron | 55.0% |
| ACCAACTCGCGGACCAAAAC+CGG | + | chr6_4:88923325-88923344 | None:intergenic | 55.0% | |
| GGGTCGCCGAATATGTGGGA+GGG | + | chr6_4:88919054-88919073 | None:intergenic | 60.0% | |
| TGGGTCGCCGAATATGTGGG+AGG | + | chr6_4:88919055-88919074 | None:intergenic | 60.0% | |
| TCTCCATCATGTACCCGGGC+TGG | - | chr6_4:88920407-88920426 | Msa1002780:intron | 60.0% | |
| AGTCCAGCCCGGGTACATGA+TGG | + | chr6_4:88920413-88920432 | None:intergenic | 60.0% | |
| TGTTCCATGGAGTCCAGCCC+GGG | + | chr6_4:88920423-88920442 | None:intergenic | 60.0% | |
| CTGTTCCATGGAGTCCAGCC+CGG | + | chr6_4:88920424-88920443 | None:intergenic | 60.0% | |
| ! | GAGGGGCACAAATGCTGGTC+TGG | - | chr6_4:88920663-88920682 | Msa1002780:intron | 60.0% |
| GCCAACGAACCAGCCACCAA+AGG | + | chr6_4:88920902-88920921 | None:intergenic | 60.0% | |
| TGGTTCGTTGGCACGCTCAC+TGG | - | chr6_4:88920910-88920929 | Msa1002780:intron | 60.0% | |
| !! | TCGTGTCCTGTGGACTGGCA+TGG | - | chr6_4:88922370-88922389 | Msa1002780:CDS | 60.0% |
| !! | CGTGTCCTGTGGACTGGCAT+GGG | - | chr6_4:88922371-88922390 | Msa1002780:CDS | 60.0% |
| GTTGCAGGAACTCTAGCGGC+TGG | - | chr6_4:88922623-88922642 | Msa1002780:intron | 60.0% | |
| !! | ACCGGTTTTGGTCCGCGAGT+TGG | - | chr6_4:88923321-88923340 | Msa1002780:intron | 60.0% |
| ! | TGTACCCGGGCTGGACTCCA+TGG | - | chr6_4:88920416-88920435 | Msa1002780:intron | 65.0% |
| GTGCACCCATGCCAGTCCAC+AGG | + | chr6_4:88922379-88922398 | None:intergenic | 65.0% | |
| GAACGCGCTTTCTCCGCCGC+CGG | - | chr6_4:88919286-88919305 | Msa1002780:three_prime_UTR | 70.0% | |
| !! | GGTCCGCGAGTTGGTCGAGC+TGG | - | chr6_4:88923330-88923349 | Msa1002780:intron | 70.0% |
| GGGCCAGCTCGACCAACTCG+CGG | + | chr6_4:88923336-88923355 | None:intergenic | 70.0% | |
| ! | GGAGAGAAAGGCGGCGCCGG+CGG | + | chr6_4:88919305-88919324 | None:intergenic | 75.0% |
| GGCGGAGAGAAAGGCGGCGC+CGG | + | chr6_4:88919308-88919327 | None:intergenic | 75.0% | |
| GGTCGAGCTGGCCCCTCCGT+TGG | - | chr6_4:88923342-88923361 | Msa1002780:intron | 75.0% | |
| !!! | GAGAAAGGCGGCGCCGGCGG+CGG | + | chr6_4:88919302-88919321 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 88918977 | 88923800 | 88918977 | ID=Msa1002780;Name=Msa1002780 |
| chr6_4 | mRNA | 88918977 | 88923800 | 88918977 | ID=Msa1002780-mRNA-1;Parent=Msa1002780;Name=Msa1002780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=186|1|1|1|1|1|10|372|394 |
| chr6_4 | exon | 88918977 | 88919481 | 88918977 | ID=Msa1002780-mRNA-1:exon:17377;Parent=Msa1002780-mRNA-1 |
| chr6_4 | exon | 88919759 | 88919817 | 88919759 | ID=Msa1002780-mRNA-1:exon:17376;Parent=Msa1002780-mRNA-1 |
| chr6_4 | exon | 88920086 | 88920238 | 88920086 | ID=Msa1002780-mRNA-1:exon:17375;Parent=Msa1002780-mRNA-1 |
| chr6_4 | exon | 88920326 | 88920417 | 88920326 | ID=Msa1002780-mRNA-1:exon:17374;Parent=Msa1002780-mRNA-1 |
| chr6_4 | exon | 88921037 | 88921139 | 88921037 | ID=Msa1002780-mRNA-1:exon:17373;Parent=Msa1002780-mRNA-1 |
| chr6_4 | exon | 88921798 | 88921968 | 88921798 | ID=Msa1002780-mRNA-1:exon:17372;Parent=Msa1002780-mRNA-1 |
| chr6_4 | exon | 88922075 | 88922134 | 88922075 | ID=Msa1002780-mRNA-1:exon:17371;Parent=Msa1002780-mRNA-1 |
| chr6_4 | exon | 88922263 | 88922391 | 88922263 | ID=Msa1002780-mRNA-1:exon:17370;Parent=Msa1002780-mRNA-1 |
| chr6_4 | exon | 88923128 | 88923217 | 88923128 | ID=Msa1002780-mRNA-1:exon:17369;Parent=Msa1002780-mRNA-1 |
| chr6_4 | exon | 88923420 | 88923800 | 88923420 | ID=Msa1002780-mRNA-1:exon:17368;Parent=Msa1002780-mRNA-1 |
| chr6_4 | five_prime_UTR | 88923615 | 88923800 | 88923615 | ID=Msa1002780-mRNA-1:five_prime_utr;Parent=Msa1002780-mRNA-1 |
| chr6_4 | CDS | 88923420 | 88923614 | 88923420 | ID=Msa1002780-mRNA-1:cds;Parent=Msa1002780-mRNA-1 |
| chr6_4 | CDS | 88923128 | 88923217 | 88923128 | ID=Msa1002780-mRNA-1:cds;Parent=Msa1002780-mRNA-1 |
| chr6_4 | CDS | 88922263 | 88922391 | 88922263 | ID=Msa1002780-mRNA-1:cds;Parent=Msa1002780-mRNA-1 |
| chr6_4 | CDS | 88922075 | 88922134 | 88922075 | ID=Msa1002780-mRNA-1:cds;Parent=Msa1002780-mRNA-1 |
| chr6_4 | CDS | 88921798 | 88921968 | 88921798 | ID=Msa1002780-mRNA-1:cds;Parent=Msa1002780-mRNA-1 |
| chr6_4 | CDS | 88921037 | 88921139 | 88921037 | ID=Msa1002780-mRNA-1:cds;Parent=Msa1002780-mRNA-1 |
| chr6_4 | CDS | 88920326 | 88920417 | 88920326 | ID=Msa1002780-mRNA-1:cds;Parent=Msa1002780-mRNA-1 |
| chr6_4 | CDS | 88920086 | 88920238 | 88920086 | ID=Msa1002780-mRNA-1:cds;Parent=Msa1002780-mRNA-1 |
| chr6_4 | CDS | 88919759 | 88919817 | 88919759 | ID=Msa1002780-mRNA-1:cds;Parent=Msa1002780-mRNA-1 |
| chr6_4 | CDS | 88919349 | 88919481 | 88919349 | ID=Msa1002780-mRNA-1:cds;Parent=Msa1002780-mRNA-1 |
| chr6_4 | three_prime_UTR | 88918977 | 88919348 | 88918977 | ID=Msa1002780-mRNA-1:three_prime_utr;Parent=Msa1002780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
