AlfalfaGEDB | Msa1407680

M. sativa cultivar zhongmu-4 / Msa1407680

KEGG: K15119
GO: GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0006839 GO:0006950 GO:0008150 GO:0009635 GO:0009636 GO:0010033 GO:0016020 GO:0016021 GO:0016530 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0140104 GO:1901562
PFAM: PF00153.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407680	XP_003602191.1	97.970	394	8	0	1	394	1	394	0.0	796

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407680	sp\|Q944H5\|MTM1_ARATH	65.375	413	119	4	4	394	3	413	0.0	541

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407680	G7J698	97.970	394	8	0	1	394	1	394	0.0	796

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0372290	Msa1407680	0.804607	1.992180e-49	-8.615850e-47
Msa0375900	Msa1407680	0.977436	8.921450e-144	-8.615850e-47
Msa0420530	Msa1407680	0.820428	6.895767e-53	-8.615850e-47
Msa0466780	Msa1407680	0.815473	9.079395e-52	-8.615850e-47
Msa1002780	Msa1407680	0.972099	3.233486e-134	-8.615850e-47
Msa1407680	Msa1425840	0.817546	3.117512e-52	-8.615850e-47
Msa1407680	Msa1449760	0.984844	9.342118e-162	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407680	MtrunA17_Chr3g0126331	97.970	394	8	0	1	394	1	394	0.0	796
Msa1407680	MtrunA17_Chr7g0275411	65.385	364	101	5	31	394	4	342	1.11e-166	470
Msa1407680	MtrunA17_Chr7g0240341	25.000	264	174	4	134	392	75	319	1.50e-19	88.6
Msa1407680	MtrunA17_Chr4g0008061	25.145	346	189	11	46	386	17	297	6.85e-16	77.8
Msa1407680	MtrunA17_Chr5g0436041	25.352	284	182	6	110	387	62	321	1.41e-15	77.0
Msa1407680	MtrunA17_Chr4g0067231	23.269	361	201	11	46	383	14	321	1.58e-15	77.0
Msa1407680	MtrunA17_Chr7g0241521	25.000	340	191	10	32	370	6	282	2.91e-15	75.9
Msa1407680	MtrunA17_Chr3g0137941	25.097	259	169	5	128	384	155	390	5.19e-15	76.3
Msa1407680	MtrunA17_Chr1g0149111	24.809	262	168	6	130	387	174	410	1.56e-14	74.7
Msa1407680	MtrunA17_Chr3g0135861	26.007	273	179	8	123	384	66	326	1.92e-14	73.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1407680	AT4G27940.1	65.375	413	119	4	4	394	3	413	0.0	541
Msa1407680	AT2G46320.1	62.772	368	118	7	29	391	8	361	7.84e-147	421
Msa1407680	AT2G46320.3	68.872	257	69	4	138	391	14	262	1.11e-113	333
Msa1407680	AT2G46320.2	68.872	257	69	4	138	391	14	262	1.11e-113	333
Msa1407680	AT2G46320.5	68.872	257	69	4	138	391	14	262	1.11e-113	333
Msa1407680	AT2G46320.4	68.837	215	58	3	138	351	14	220	2.95e-91	274
Msa1407680	AT4G26180.1	29.856	278	168	9	121	388	50	310	2.20e-19	88.6
Msa1407680	AT3G55640.1	26.667	270	173	6	122	385	73	323	4.81e-17	82.0
Msa1407680	AT3G55640.4	26.667	270	173	6	122	385	73	323	4.81e-17	82.0
Msa1407680	AT4G26180.2	30.159	252	149	9	121	362	50	284	2.84e-16	79.0

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Find 136 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACAATTCCAACGGAG+GGG	0.665573	tig0023322:+25000	None:intergenic
AAACTTCTTAGTTTGGTTGG+AGG	0.485679	tig0023322:-25805	Msa1407680:CDS
AAAGTCTGGAATACTCCAGG+TGG	0.725173	tig0023322:+26681	None:intergenic
AAATATCCACAATATTCACC+TGG	0.641051	tig0023322:+24924	None:intergenic
AAATGAAACAACAATTCCAA+CGG	0.627429	tig0023322:+24995	None:intergenic
AAATGGGTCGCCGAATATGT+GGG	0.612193	tig0023322:+29253	None:intergenic
AACACCATATGTACCTTTGG+TGG	0.530531	tig0023322:-27463	Msa1407680:CDS
AAGGCTTTACTAGGCTATGG+AGG	0.540792	tig0023322:-27705	Msa1407680:CDS
AAGGGGATTGACAATGACGG+CGG	0.721836	tig0023322:+28985	None:intergenic
AATATTTGTGCCCTTGACAT+TGG	0.536147	tig0023322:+26644	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAAAAATGCGAAATGAAA+TGG	+	tig0023322:24673-24692	None:intergenic	30.0%
ATCAGTAGAATGTCATGTTT+CGG	-	tig0023322:25215-25234	Msa1407680:intron	30.0%
AATTCCATCAACTAACGTAT+TGG	+	tig0023322:25440-25459	None:intergenic	30.0%
TTGAAAACAATCCCACATTA+CGG	+	tig0023322:25788-25807	None:intergenic	30.0%
GAAAGGTCAAATTAATTGCT+CGG	+	tig0023322:25907-25926	None:intergenic	30.0%
ATAGAATATACGTACTTGGA+CGG	-	tig0023322:26089-26108	Msa1407680:intron	30.0%
TTTATATGTTCACATCAGGT+CGG	-	tig0023322:26348-26367	Msa1407680:intron	30.0%
ATACACGGATTCAAAAAACA+TGG	+	tig0023322:26615-26634	None:intergenic	30.0%
TTAGTTAAAGAACTGCATTG+TGG	-	tig0023322:26861-26880	Msa1407680:intron	30.0%
TATATTCACTACAATTCACG+TGG	-	tig0023322:26961-26980	Msa1407680:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0023322	gene	24575	29353	24575	ID=Msa1407680;Name=Msa1407680
tig0023322	mRNA	24575	29353	24575	ID=Msa1407680-mRNA-1;Parent=Msa1407680;Name=Msa1407680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=186\|1\|1\|1\|1\|1\|10\|372\|394
tig0023322	exon	24575	25079	24575	ID=Msa1407680-mRNA-1:exon:25246;Parent=Msa1407680-mRNA-1
tig0023322	exon	25357	25415	25357	ID=Msa1407680-mRNA-1:exon:25245;Parent=Msa1407680-mRNA-1
tig0023322	exon	25684	25836	25684	ID=Msa1407680-mRNA-1:exon:25244;Parent=Msa1407680-mRNA-1
tig0023322	exon	25924	26015	25924	ID=Msa1407680-mRNA-1:exon:25243;Parent=Msa1407680-mRNA-1
tig0023322	exon	26631	26733	26631	ID=Msa1407680-mRNA-1:exon:25242;Parent=Msa1407680-mRNA-1
tig0023322	exon	27392	27562	27392	ID=Msa1407680-mRNA-1:exon:25241;Parent=Msa1407680-mRNA-1
tig0023322	exon	27669	27728	27669	ID=Msa1407680-mRNA-1:exon:25240;Parent=Msa1407680-mRNA-1
tig0023322	exon	27857	27985	27857	ID=Msa1407680-mRNA-1:exon:25239;Parent=Msa1407680-mRNA-1
tig0023322	exon	28681	28770	28681	ID=Msa1407680-mRNA-1:exon:25238;Parent=Msa1407680-mRNA-1
tig0023322	exon	28973	29353	28973	ID=Msa1407680-mRNA-1:exon:25237;Parent=Msa1407680-mRNA-1
tig0023322	five_prime_UTR	29168	29353	29168	ID=Msa1407680-mRNA-1:five_prime_utr;Parent=Msa1407680-mRNA-1
tig0023322	CDS	28973	29167	28973	ID=Msa1407680-mRNA-1:cds;Parent=Msa1407680-mRNA-1
tig0023322	CDS	28681	28770	28681	ID=Msa1407680-mRNA-1:cds;Parent=Msa1407680-mRNA-1
tig0023322	CDS	27857	27985	27857	ID=Msa1407680-mRNA-1:cds;Parent=Msa1407680-mRNA-1
tig0023322	CDS	27669	27728	27669	ID=Msa1407680-mRNA-1:cds;Parent=Msa1407680-mRNA-1
tig0023322	CDS	27392	27562	27392	ID=Msa1407680-mRNA-1:cds;Parent=Msa1407680-mRNA-1
tig0023322	CDS	26631	26733	26631	ID=Msa1407680-mRNA-1:cds;Parent=Msa1407680-mRNA-1
tig0023322	CDS	25924	26015	25924	ID=Msa1407680-mRNA-1:cds;Parent=Msa1407680-mRNA-1
tig0023322	CDS	25684	25836	25684	ID=Msa1407680-mRNA-1:cds;Parent=Msa1407680-mRNA-1
tig0023322	CDS	25357	25415	25357	ID=Msa1407680-mRNA-1:cds;Parent=Msa1407680-mRNA-1
tig0023322	CDS	24947	25079	24947	ID=Msa1407680-mRNA-1:cds;Parent=Msa1407680-mRNA-1
tig0023322	three_prime_UTR	24575	24946	24575	ID=Msa1407680-mRNA-1:three_prime_utr;Parent=Msa1407680-mRNA-1

Gene Sequence

>Msa1407680

ATGGTCGATTCTGCAGACCGAATCCAAAACCCATGGATGGCTTCCGAACAACAAACTCCAATTCAAATTATCCTAAATCATAATAATCCTAAATCATCAAATAATGACAAATTAGGGATTGCTGAACGCGCTTTCTCCGCCGCCGGCGCCGCCTTTCTCTCCGCCGTCATTGTCAATCCCCTTGATGTTGCCAAGACAAGGTTGCAAGCACAAGCTGCAGGGGTTGCTTATTCTCATCCTCTCAGTAATCTCATCAGTAGAATGTCATGTTTCGGTCCAAATATGATGTTTGCTGATTTAAGATGTTCTCCATCATGTACCCGGGCTGGACTCCATGGAACAGTATCACTATGTCCTCCCGATTGTTTTCGGTACAAAGGAACACTGGATGTTATTTGTAAAATTATACAACAGGAAGGCTTTACTAGGCTATGGAGGGGCACAAATGCTGGTCTGGCTCTTGCAGTACCAACTGTCGGAATTTACCTTCCTTGCTATGATATATTCCGCAACTGGTTCGAGGAATTGACAGCCAAAAGTGCTCCAACTGCAACACCATATGTACCTTTGGTGGCTGGTTCGTTGGCACGCTCACTGGCTTGTGCAACTTGTTATCCTATTGAACTTGCCAGAACTCGTATGCAGGCATTTAAAGAGACTCAAGTTGGCAAGAAGCCACCTGGAGTATTCCAGACTTTGGTAGGCGTTGTCTCCAATGTCAAGGGCACAAATATTCCATCGAACAGTTTGCAAAGTTATCGTGTCCTGTGGACTGGCATGGGTGCACAACTTGCCCGTGATGTACCATTCTCTGCGATTTGTTGGTCAACACTTGAGCCTACTAGAAGAAAACTTCTTAGTTTGGTTGGAGGAGATGATGCCGGTATATTGAGTGTTCTTGGCGCAAATTTTTCAGCTGGTTTTGTTGCAGGAACTCTAGCGGCTGGAGCTACATGTCCACTAGATGTTGCAAAAACTCGTAGGCAGATAGAGATGGATCATGTTAGAGCGTTGAAAATGACCACGAGACAGACACTGATAGAGATCTGGAGAGATGGAGGCTTGAAAGGACTTTTTACCGGTTTTGGTCCGCGAGTTGGTCGAGCTGGCCCCTCCGTTGGAATTGTTGTTTCATTTTATGAAGTTGTAAAGTTTGCCCTAAATCACCGGCAAACAACATCATGA

Protein sequence

>Msa1407680

MVDSADRIQNPWMASEQQTPIQIILNHNNPKSSNNDKLGIAERAFSAAGAAFLSAVIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMSCFGPNMMFADLRCSPSCTRAGLHGTVSLCPPDCFRYKGTLDVICKIIQQEGFTRLWRGTNAGLALAVPTVGIYLPCYDIFRNWFEELTAKSAPTATPYVPLVAGSLARSLACATCYPIELARTRMQAFKETQVGKKPPGVFQTLVGVVSNVKGTNIPSNSLQSYRVLWTGMGAQLARDVPFSAICWSTLEPTRRKLLSLVGGDDAGILSVLGANFSAGFVAGTLAAGATCPLDVAKTRRQIEMDHVRALKMTTRQTLIEIWRDGGLKGLFTGFGPRVGRAGPSVGIVVSFYEVVKFALNHRQTTS*