AlfalfaGEDB | Msa0377930

M. sativa cultivar zhongmu-4 / Msa0377930

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377930	XP_003602603.1	92.500	360	24	1	1	360	1	357	0.0	689

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377930	sp\|Q9FY82\|NAC82_ARATH	47.866	328	135	10	1	305	1	315	1.42e-89	280

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377930	G7JBJ4	92.500	360	24	1	1	360	1	357	0.0	689

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TFs/TRs:

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Gene ID	Type	Classification
Msa0377930	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014410	Msa0377930	-0.812094	5.039471e-51	-8.615850e-47
Msa0154270	Msa0377930	-0.812309	4.523457e-51	-8.615850e-47
Msa0377860	Msa0377930	0.992091	2.993611e-191	-8.615850e-47
Msa0377930	Msa0473850	0.956561	2.204241e-114	-8.615850e-47
Msa0377930	Msa0518090	0.952113	4.868018e-110	-8.615850e-47
Msa0377930	Msa0667070	0.808063	3.723673e-50	-8.615850e-47
Msa0377930	Msa1204600	0.815515	8.888059e-52	-8.615850e-47
Msa0377930	Msa1241820	-0.803741	3.015819e-49	-8.615850e-47
Msa0377930	Msa1313050	-0.820341	7.219613e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377930	MtrunA17_Chr3g0130101	92.500	360	24	1	1	360	1	357	0.0	689
Msa0377930	MtrunA17_Chr8g0364791	65.106	235	76	3	1	235	1	229	3.51e-106	318
Msa0377930	MtrunA17_Chr8g0384201	64.255	235	78	3	1	235	1	229	1.08e-105	319
Msa0377930	MtrunA17_Chr3g0092671	57.143	175	73	2	9	182	7	180	1.92e-68	224
Msa0377930	MtrunA17_Chr1g0201021	50.754	199	93	1	1	194	13	211	4.42e-68	224
Msa0377930	MtrunA17_Chr1g0197361	54.872	195	80	4	9	201	10	198	7.57e-68	224
Msa0377930	MtrunA17_Chr1g0197351	56.742	178	70	2	7	178	42	218	2.75e-63	209
Msa0377930	MtrunA17_Chr6g0481091	57.616	151	64	0	9	159	8	158	7.10e-61	195
Msa0377930	MtrunA17_Chr3g0109821	55.215	163	69	3	9	168	8	169	7.67e-57	196
Msa0377930	MtrunA17_Chr5g0433781	53.704	162	74	1	9	169	8	169	7.76e-57	195

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0377930	AT5G09330.5	47.866	328	135	10	1	305	1	315	1.45e-90	280
Msa0377930	AT5G09330.2	47.866	328	135	10	1	305	1	315	1.45e-90	280
Msa0377930	AT5G09330.4	47.866	328	135	10	1	305	1	315	1.45e-90	280
Msa0377930	AT5G09330.3	47.866	328	135	10	1	305	1	315	1.45e-90	280
Msa0377930	AT5G09330.1	47.866	328	135	10	1	305	1	315	1.45e-90	280
Msa0377930	AT5G64060.1	55.042	238	99	3	1	238	1	230	6.19e-88	269
Msa0377930	AT5G04410.1	61.538	182	69	1	7	188	9	189	1.01e-78	252
Msa0377930	AT3G10500.1	63.253	166	61	0	7	172	9	174	1.94e-74	240
Msa0377930	AT1G34190.1	47.867	211	109	1	5	215	14	223	1.15e-67	223
Msa0377930	AT3G10480.2	56.725	171	73	1	7	177	27	196	8.12e-65	212

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Find 164 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAGGTCCTGGTCCC+AGG	0.470057	3_1:+78614077	Msa0377930:CDS
AAAATTGTTGCTTGGTGGAG+GGG	0.475271	3_1:-78611685	None:intergenic
AAACAAAATTGATGATTCCA+GGG	0.554783	3_1:+78612315	Msa0377930:CDS
AAATACCCTACAAATCACAT+AGG	0.659266	3_1:-78614053	None:intergenic
AACATAAGAATCAAGTGGTG+GGG	0.590194	3_1:+78612720	Msa0377930:CDS
AACCATTTAATGAGAAAGAC+TGG	0.390374	3_1:+78614119	Msa0377930:CDS
AAGAAAAGTCATCGGCACAG+TGG	0.690558	3_1:-78611921	None:intergenic
AAGAGGAAGCTTACCGGAGA+AGG	0.538649	3_1:-78611818	None:intergenic
AAGCAACTCAAAGAAATCAG+GGG	0.683918	3_1:-78616323	None:intergenic
AAGCTGTTTCTGTTTCTGTT+TGG	0.317698	3_1:+78612259	Msa0377930:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGAAGGGTAGTATTTATAAT+AGG	-	chr3_1:78611735-78611754	None:intergenic	30.0%
ATTTCATATTCTGAGCGATT+GGG	-	chr3_1:78611874-78611893	None:intergenic	30.0%
AATTTCATATTCTGAGCGAT+TGG	-	chr3_1:78611875-78611894	None:intergenic	30.0%
GTGATGATAAGAAAAGTCAT+CGG	-	chr3_1:78611932-78611951	None:intergenic	30.0%
TTCTCCGTCTTCAATTATTA+GGG	+	chr3_1:78612067-78612086	Msa0377930:five_prime_UTR	30.0%
ACAACCCTAATAATTGAAGA+CGG	-	chr3_1:78612074-78612093	None:intergenic	30.0%
TGCAATATTTCTTTCCAACA+GGG	-	chr3_1:78612631-78612650	None:intergenic	30.0%
TGTTGGAAAGAAATATTGCA+CGG	+	chr3_1:78612631-78612650	Msa0377930:CDS	30.0%
GATTGAACATAAGAATCAAG+TGG	+	chr3_1:78612715-78612734	Msa0377930:CDS	30.0%
GAGGAATTATGTTTACCAAT+TGG	+	chr3_1:78612877-78612896	Msa0377930:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	78611648	78616667	78611648	ID=Msa0377930;Name=Msa0377930
chr3_1	mRNA	78611648	78616667	78611648	ID=Msa0377930-mRNA-1;Parent=Msa0377930;Name=Msa0377930-mRNA-1;_AED=0.03;_eAED=0.03;_QI=570\|1\|1\|1\|0.75\|0.6\|5\|277\|360
chr3_1	exon	78611648	78611826	78611648	ID=Msa0377930-mRNA-1:exon:18951;Parent=Msa0377930-mRNA-1
chr3_1	exon	78611917	78612467	78611917	ID=Msa0377930-mRNA-1:exon:18952;Parent=Msa0377930-mRNA-1
chr3_1	exon	78612582	78612859	78612582	ID=Msa0377930-mRNA-1:exon:18953;Parent=Msa0377930-mRNA-1
chr3_1	exon	78614049	78614429	78614049	ID=Msa0377930-mRNA-1:exon:18954;Parent=Msa0377930-mRNA-1
chr3_1	exon	78616127	78616667	78616127	ID=Msa0377930-mRNA-1:exon:18955;Parent=Msa0377930-mRNA-1
chr3_1	five_prime_UTR	78611648	78611826	78611648	ID=Msa0377930-mRNA-1:five_prime_utr;Parent=Msa0377930-mRNA-1
chr3_1	five_prime_UTR	78611917	78612307	78611917	ID=Msa0377930-mRNA-1:five_prime_utr;Parent=Msa0377930-mRNA-1
chr3_1	CDS	78612308	78612467	78612308	ID=Msa0377930-mRNA-1:cds;Parent=Msa0377930-mRNA-1
chr3_1	CDS	78612582	78612859	78612582	ID=Msa0377930-mRNA-1:cds;Parent=Msa0377930-mRNA-1
chr3_1	CDS	78614049	78614429	78614049	ID=Msa0377930-mRNA-1:cds;Parent=Msa0377930-mRNA-1
chr3_1	CDS	78616127	78616390	78616127	ID=Msa0377930-mRNA-1:cds;Parent=Msa0377930-mRNA-1
chr3_1	three_prime_UTR	78616391	78616667	78616391	ID=Msa0377930-mRNA-1:three_prime_utr;Parent=Msa0377930-mRNA-1

Gene Sequence

>Msa0377930

ATGGCCGAAACAAAATTGATGATTCCAGGGTTTCGTTTTCACCCCACTGATGTTGAGCTGGTAATGTATTTTCTCAAGAGGAAGATTTTGGGTAGAAAATTCCCTTTTCATGTCATTGCTGAACTTGACATTTACAAGTATGCTCCATGGGATCTACCAGATAAATCTTTGCTCAAGAGTGGTGATTTGCAATGGTACTTCTTTACCCCTGTTGGAAAGAAATATTGCACGGGAGGGAGGATGAATCGGGCAACAGAAGTAGGGTACTGGAAGACTACAGGGAAGGATAGGTCGATTGAACATAAGAATCAAGTGGTGGGGATGATAAGAACCCTGGTGTTTCACACTGGCAAAGCTCCTAAAGGAGACCGAACTGATTGGGTTATGCATGAATACAGACTCGAAGACAAAGACCTAGCTGACAATGGTGTTCCACAGAACTCCTATGTGATTTGTAGGGTATTTCAAAAGGAAGGTCCTGGTCCCAGGAATGGTGCACAGTATGGAAAACCATTTAATGAGAAAGACTGGGATAGCGAAGAGGAAATTGATTATGTACAAGCTGTCCCTGTTGCTGCTGTGTCTGCACCAGCTCTCATTCTACCTAGCTCAAGCCATATTTCTGAAGTAAATGACATGCATCCCTCTGCAAGTGGATGTATTGGACTGACCTCTTTATCATGTCTATCAAGATTGATGCCCTCTGGCATGACACACCCTTCAGCTCTAGGCAATCAAGCTGATGATGACATTTTATCCATGCTTGCTATTTTCGACGATGAAAATGCATTGGCCGGGAATGAAAACAATGGATCTGAGAAGGTTGATAATCCTGGTCAAGCAAACAACGCTGAAGGTGCACCTTATTTAATTCCAAATGAGATTTTTGAGGACCTGGGAGATATTAACAGCTTGGTTGGATTGGATGATGGAAGCGGTTTTTCCTATGGCCAAAAAGATGAAAATACTATAAACGAAAAGCTATTTGCTGGCGACATCTCTTTGTTTTGCAACCCCCCTGATTTCTTTGAGTTGCTTGACCTAGAGGTGCCATTATCCTGGCAGACTAAACATGATGGCTGA

Protein sequence

>Msa0377930

MAETKLMIPGFRFHPTDVELVMYFLKRKILGRKFPFHVIAELDIYKYAPWDLPDKSLLKSGDLQWYFFTPVGKKYCTGGRMNRATEVGYWKTTGKDRSIEHKNQVVGMIRTLVFHTGKAPKGDRTDWVMHEYRLEDKDLADNGVPQNSYVICRVFQKEGPGPRNGAQYGKPFNEKDWDSEEEIDYVQAVPVAAVSAPALILPSSSHISEVNDMHPSASGCIGLTSLSCLSRLMPSGMTHPSALGNQADDDILSMLAIFDDENALAGNENNGSEKVDNPGQANNAEGAPYLIPNEIFEDLGDINSLVGLDDGSGFSYGQKDENTINEKLFAGDISLFCNPPDFFELLDLEVPLSWQTKHDG*