Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204600 | XP_003608455.2 | 93.578 | 109 | 6 | 1 | 81 | 188 | 99 | 207 | 7.50e-36 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204600 | sp|Q9FPR2|AGP18_ARATH | 49.254 | 67 | 30 | 2 | 124 | 188 | 145 | 209 | 4.44e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204600 | G7JCS7 | 93.578 | 109 | 6 | 1 | 81 | 188 | 99 | 207 | 3.58e-36 | 134 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0622910 | Msa1204600 | 0.827082 | 1.904299e-54 | -8.615850e-47 |
| Msa0627580 | Msa1204600 | 0.820641 | 6.161972e-53 | -8.615850e-47 |
| Msa0629440 | Msa1204600 | 0.927375 | 1.283573e-91 | -8.615850e-47 |
| Msa0643020 | Msa1204600 | 0.821207 | 4.563469e-53 | -8.615850e-47 |
| Msa0667070 | Msa1204600 | 0.917632 | 4.192916e-86 | -8.615850e-47 |
| Msa0682730 | Msa1204600 | 0.819228 | 1.296930e-52 | -8.615850e-47 |
| Msa0700490 | Msa1204600 | 0.832375 | 9.798229e-56 | -8.615850e-47 |
| Msa0713230 | Msa1204600 | -0.804988 | 1.658203e-49 | -8.615850e-47 |
| Msa0801360 | Msa1204600 | -0.814856 | 1.244940e-51 | -8.615850e-47 |
| Msa0818440 | Msa1204600 | -0.816821 | 4.538751e-52 | -8.615850e-47 |
| Msa0839830 | Msa1204600 | -0.810434 | 1.154771e-50 | -8.615850e-47 |
| Msa0131050 | Msa1204600 | 0.801416 | 9.096224e-49 | -8.615850e-47 |
| Msa0147880 | Msa1204600 | 0.800017 | 1.755336e-48 | -8.615850e-47 |
| Msa0198440 | Msa1204600 | -0.811263 | 7.641565e-51 | -8.615850e-47 |
| Msa0220960 | Msa1204600 | 0.815976 | 7.015506e-52 | -8.615850e-47 |
| Msa0376340 | Msa1204600 | -0.828735 | 7.619749e-55 | -8.615850e-47 |
| Msa0377860 | Msa1204600 | 0.812099 | 5.026755e-51 | -8.615850e-47 |
| Msa0377930 | Msa1204600 | 0.815515 | 8.888059e-52 | -8.615850e-47 |
| Msa0390090 | Msa1204600 | 0.828864 | 7.093486e-55 | -8.615850e-47 |
| Msa0424780 | Msa1204600 | -0.821296 | 4.354771e-53 | -8.615850e-47 |
| Msa0465800 | Msa1204600 | -0.806477 | 8.071966e-50 | -8.615850e-47 |
| Msa1041160 | Msa1204600 | 0.820508 | 6.608242e-53 | -8.615850e-47 |
| Msa0242820 | Msa1204600 | 0.830001 | 3.754632e-55 | -8.615850e-47 |
| Msa0269260 | Msa1204600 | 0.841157 | 5.632516e-58 | -8.615850e-47 |
| Msa0278670 | Msa1204600 | -0.811889 | 5.586257e-51 | -8.615850e-47 |
| Msa0281940 | Msa1204600 | -0.802628 | 5.125731e-49 | -8.615850e-47 |
| Msa0287660 | Msa1204600 | 0.817525 | 3.152341e-52 | -8.615850e-47 |
| Msa0300310 | Msa1204600 | 0.819982 | 8.724186e-53 | -8.615850e-47 |
| Msa0318070 | Msa1204600 | -0.814814 | 1.271582e-51 | -8.615850e-47 |
| Msa0341190 | Msa1204600 | -0.803989 | 2.678302e-49 | -8.615850e-47 |
| Msa1127170 | Msa1204600 | 0.812670 | 3.772861e-51 | -8.615850e-47 |
| Msa1141250 | Msa1204600 | 0.839295 | 1.726399e-57 | -8.615850e-47 |
| Msa1204600 | Msa1204770 | 0.981996 | 5.721457e-154 | -8.615850e-47 |
| Msa1204600 | Msa1211390 | -0.804856 | 1.767119e-49 | -8.615850e-47 |
| Msa1204600 | Msa1241820 | -0.821748 | 3.423942e-53 | -8.615850e-47 |
| Msa1204600 | Msa1304320 | 0.955205 | 5.181057e-113 | -8.615850e-47 |
| Msa1204600 | Msa1329350 | 0.977259 | 2.001697e-143 | -8.615850e-47 |
| Msa1204600 | Msa1329420 | 0.954049 | 7.079664e-112 | -8.615850e-47 |
| Msa1204600 | Msa1329580 | 0.952317 | 3.142820e-110 | -8.615850e-47 |
| Msa1204600 | Msa1362000 | 0.830465 | 2.893219e-55 | -8.615850e-47 |
| Msa1204600 | Msa1379680 | 0.838456 | 2.845528e-57 | -8.615850e-47 |
| Msa1204600 | Msa1412620 | 0.908746 | 1.220177e-81 | -8.615850e-47 |
| Msa1204600 | Msa1433900 | 0.819943 | 8.905455e-53 | -8.615850e-47 |
| Msa0516160 | Msa1204600 | -0.840219 | 9.919985e-58 | -8.615850e-47 |
| Msa0522440 | Msa1204600 | 0.804968 | 1.674297e-49 | -8.615850e-47 |
| Msa0530950 | Msa1204600 | -0.813436 | 2.562562e-51 | -8.615850e-47 |
| Msa0577320 | Msa1204600 | 0.825861 | 3.720551e-54 | -8.615850e-47 |
| Msa0601920 | Msa1204600 | 0.817316 | 3.513290e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204600 | MtrunA17_Chr4g0053731 | 93.578 | 109 | 6 | 1 | 81 | 188 | 99 | 207 | 6.90e-40 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1204600 | AT4G37450.2 | 49.254 | 67 | 30 | 2 | 124 | 188 | 214 | 278 | 1.92e-12 | 64.3 |
| Msa1204600 | AT4G37450.1 | 49.254 | 67 | 30 | 2 | 124 | 188 | 145 | 209 | 4.52e-12 | 62.8 |
Find 51 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAAAGTTGGGGCTTTGA+TGG | 0.233289 | 8_1:+60382728 | None:intergenic |
| CCCTTGCTTGGTGCTGGAGC+TGG | 0.249954 | 8_1:+60382256 | None:intergenic |
| TTCTTTCCCTTGCTTGGTGC+TGG | 0.263309 | 8_1:+60382250 | None:intergenic |
| TGCATCATTCTTTACATTGA+TGG | 0.268324 | 8_1:-60382926 | Msa1204600:intron |
| CTAGTGAAAGATTCATTAAA+TGG | 0.292468 | 8_1:-60382967 | Msa1204600:CDS |
| GGTGCTCCTGCTGGTGGTGC+TGG | 0.331916 | 8_1:+60382178 | None:intergenic |
| AAACATGAAACTTGAAAGTT+GGG | 0.357064 | 8_1:+60382718 | None:intergenic |
| TTGTTCTTCTTTCCCTTGCT+TGG | 0.362413 | 8_1:+60382244 | None:intergenic |
| AGAGTGGAGCAGAAACTATC+AGG | 0.404075 | 8_1:-60381247 | Msa1204600:CDS |
| GCACCACCAGCAGGAGCACC+TGG | 0.414679 | 8_1:-60382175 | Msa1204600:CDS |
| CCTGCATCTTCGCTTGGTCC+AGG | 0.415878 | 8_1:+60382157 | None:intergenic |
| GGTGGTGAGCTGACTGGAGC+AGG | 0.426318 | 8_1:+60382322 | None:intergenic |
| TAAACATGAAACTTGAAAGT+TGG | 0.432855 | 8_1:+60382717 | None:intergenic |
| AGCACCATCACCAGCGTTGT+TGG | 0.436518 | 8_1:-60382206 | Msa1204600:CDS |
| GCACCATCACCAGCGTTGTT+GGG | 0.436941 | 8_1:-60382205 | Msa1204600:CDS |
| GGTGCTGGAGCTGGAACCGC+TGG | 0.440384 | 8_1:+60382265 | None:intergenic |
| AAGATTTACCTCATCGTTCG+CGG | 0.444163 | 8_1:+60382114 | None:intergenic |
| GCTCCTGCTGGTGGTGCTGG+TGG | 0.457667 | 8_1:+60382181 | None:intergenic |
| CTTGGTCCAGGTGCTCCTGC+TGG | 0.461592 | 8_1:+60382169 | None:intergenic |
| GAGCTGACTGGAGCAGGTGT+GGG | 0.472900 | 8_1:+60382328 | None:intergenic |
| ACTGCTGGTGGTGAGCTGAC+TGG | 0.475791 | 8_1:+60382316 | None:intergenic |
| AGGCTTAGCTTTGAGCTGGA+TGG | 0.476021 | 8_1:-60381207 | Msa1204600:CDS |
| GGTGCTCCTGCATCTTCGCT+TGG | 0.481476 | 8_1:+60382151 | None:intergenic |
| AGCGAAGATGCAGGAGCACC+TGG | 0.485174 | 8_1:-60382148 | Msa1204600:CDS |
| TGAGCTGACTGGAGCAGGTG+TGG | 0.488282 | 8_1:+60382327 | None:intergenic |
| CTCATCGTTCGCGGTAGAAG+CGG | 0.489228 | 8_1:+60382123 | None:intergenic |
| TCCAGCTCCAGCACCAAGCA+AGG | 0.510907 | 8_1:-60382257 | Msa1204600:CDS |
| GTGGTGGTTGGAGCAGCCAC+AGG | 0.519021 | 8_1:+60382289 | None:intergenic |
| CCTGGACCAAGCGAAGATGC+AGG | 0.520602 | 8_1:-60382157 | Msa1204600:CDS |
| GGTCCAGGTGCTCCTGCTGG+TGG | 0.523649 | 8_1:+60382172 | None:intergenic |
| AGCTGGAACCGCTGGTGTGG+TGG | 0.532724 | 8_1:+60382273 | None:intergenic |
| GGAACCGCTGGTGTGGTGGT+TGG | 0.535849 | 8_1:+60382277 | None:intergenic |
| AACAACGCTGGTGATGGTGC+TGG | 0.542731 | 8_1:+60382208 | None:intergenic |
| TAGGAGGCTTAGCTTTGAGC+TGG | 0.549247 | 8_1:-60381211 | Msa1204600:CDS |
| TGGAGCTGGAACCGCTGGTG+TGG | 0.549390 | 8_1:+60382270 | None:intergenic |
| GGTCCACCAGCACCACCAGC+AGG | 0.553644 | 8_1:-60382184 | Msa1204600:CDS |
| CTGACTGGAGCAGGTGTGGG+TGG | 0.564849 | 8_1:+60382331 | None:intergenic |
| GGACCCAACAACGCTGGTGA+TGG | 0.568484 | 8_1:+60382202 | None:intergenic |
| GCAGCCACAGGTGTTACTGC+TGG | 0.577094 | 8_1:+60382301 | None:intergenic |
| TGCTCCAACCACCACACCAG+CGG | 0.608500 | 8_1:-60382281 | Msa1204600:CDS |
| GTTAATACACTGAAGAGAGT+CGG | 0.615459 | 8_1:+60382752 | None:intergenic |
| ATCAGGAGCTTGAAGATGCT+AGG | 0.627021 | 8_1:-60381230 | Msa1204600:CDS |
| AACATGAAACTTGAAAGTTG+GGG | 0.627319 | 8_1:+60382719 | None:intergenic |
| GGAAAGAAGAACAAGAAGCA+CGG | 0.641441 | 8_1:-60382235 | Msa1204600:CDS |
| CCAGCTCCAGCACCAAGCAA+GGG | 0.643686 | 8_1:-60382256 | Msa1204600:CDS |
| GGTGTGGGTGGTGATTTGAC+AGG | 0.655827 | 8_1:+60382343 | None:intergenic |
| GCTGGTGGACCCAACAACGC+TGG | 0.656094 | 8_1:+60382196 | None:intergenic |
| CGCTTCTACCGCGAACGATG+AGG | 0.660407 | 8_1:-60382122 | Msa1204600:intron |
| GCCACAGGTGTTACTGCTGG+TGG | 0.660434 | 8_1:+60382304 | None:intergenic |
| AGGAGCTTGAAGATGCTAGG+AGG | 0.675654 | 8_1:-60381227 | Msa1204600:CDS |
| ACCACCAGCAGTAACACCTG+TGG | 0.703069 | 8_1:-60382305 | Msa1204600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAATTTATATTTATAT+TGG | + | chr8_1:60382758-60382777 | None:intergenic | 0.0% |
| !! | ATATAAATTTATATTTATAT+TGG | + | chr8_1:60382758-60382777 | None:intergenic | 0.0% |
| !!! | TACTTTCTTTTTTAAAATAA+AGG | + | chr8_1:60382549-60382568 | None:intergenic | 10.0% |
| !!! | TACTTTCTTTTTTAAAATAA+AGG | + | chr8_1:60382549-60382568 | None:intergenic | 10.0% |
| !! | TAGTGTATGTTATTATTTAT+CGG | - | chr8_1:60381351-60381370 | Msa1204600:intron | 15.0% |
| !! | AAATAAGGTTATAAAGATAA+AGG | - | chr8_1:60382450-60382469 | Msa1204600:intron | 15.0% |
| !! | AATAAGGTTATAAAGATAAA+GGG | - | chr8_1:60382451-60382470 | Msa1204600:intron | 15.0% |
| !! | TAAATATATTGTTCATACAA+TGG | - | chr8_1:60382598-60382617 | Msa1204600:intron | 15.0% |
| !! | TAGTGTATGTTATTATTTAT+CGG | - | chr8_1:60381351-60381370 | Msa1204600:intron | 15.0% |
| !! | AAATAAGGTTATAAAGATAA+AGG | - | chr8_1:60382450-60382469 | Msa1204600:intron | 15.0% |
| !! | AATAAGGTTATAAAGATAAA+GGG | - | chr8_1:60382451-60382470 | Msa1204600:intron | 15.0% |
| !! | TAAATATATTGTTCATACAA+TGG | - | chr8_1:60382598-60382617 | Msa1204600:intron | 15.0% |
| !!! | TAACAAAAAAGCAAATTTTG+AGG | + | chr8_1:60381201-60381220 | None:intergenic | 20.0% |
| !! | AGTGTATGTTATTATTTATC+GGG | - | chr8_1:60381352-60381371 | Msa1204600:intron | 20.0% |
| !!! | TTTTATTTTCAGACCTAATA+AGG | + | chr8_1:60382302-60382321 | None:intergenic | 20.0% |
| !!! | ATTTTATTCATATTTGGATC+TGG | + | chr8_1:60382425-60382444 | None:intergenic | 20.0% |
| !!! | AGAAAATATGTTCATAGTTT+TGG | - | chr8_1:60382495-60382514 | Msa1204600:intron | 20.0% |
| !! | TGAATAGTATATGTCTATTT+AGG | + | chr8_1:60382575-60382594 | None:intergenic | 20.0% |
| !! | GTATGATTATAAAACAATGA+TGG | - | chr8_1:60382878-60382897 | Msa1204600:intron | 20.0% |
| !! | AATGATGGTTTAATGTTAAT+CGG | - | chr8_1:60382893-60382912 | Msa1204600:intron | 20.0% |
| !!! | AAGAAATTTCAAGATTTGTT+TGG | + | chr8_1:60382920-60382939 | None:intergenic | 20.0% |
| !!! | TAACAAAAAAGCAAATTTTG+AGG | + | chr8_1:60381201-60381220 | None:intergenic | 20.0% |
| !! | AGTGTATGTTATTATTTATC+GGG | - | chr8_1:60381352-60381371 | Msa1204600:intron | 20.0% |
| !!! | TTTTATTTTCAGACCTAATA+AGG | + | chr8_1:60382302-60382321 | None:intergenic | 20.0% |
| !!! | ATTTTATTCATATTTGGATC+TGG | + | chr8_1:60382425-60382444 | None:intergenic | 20.0% |
| !!! | AGAAAATATGTTCATAGTTT+TGG | - | chr8_1:60382495-60382514 | Msa1204600:intron | 20.0% |
| !! | TGAATAGTATATGTCTATTT+AGG | + | chr8_1:60382575-60382594 | None:intergenic | 20.0% |
| !! | GTATGATTATAAAACAATGA+TGG | - | chr8_1:60382878-60382897 | Msa1204600:intron | 20.0% |
| !! | AATGATGGTTTAATGTTAAT+CGG | - | chr8_1:60382893-60382912 | Msa1204600:intron | 20.0% |
| !!! | AAGAAATTTCAAGATTTGTT+TGG | + | chr8_1:60382920-60382939 | None:intergenic | 20.0% |
| ! | CTAGTGAAAGATTCATTAAA+TGG | - | chr8_1:60381236-60381255 | Msa1204600:CDS | 25.0% |
| ! | AAACATGAAACTTGAAAGTT+GGG | + | chr8_1:60381488-60381507 | None:intergenic | 25.0% |
| ! | TAAACATGAAACTTGAAAGT+TGG | + | chr8_1:60381489-60381508 | None:intergenic | 25.0% |
| ! | ATAGTTAACATAGTACAATG+TGG | - | chr8_1:60382149-60382168 | Msa1204600:CDS | 25.0% |
| ! | CTAACCAAAATCTAAGTTTA+AGG | - | chr8_1:60382232-60382251 | Msa1204600:CDS | 25.0% |
| ! | ACCATAAAAAGAAGAGTAAT+TGG | - | chr8_1:60382334-60382353 | Msa1204600:CDS | 25.0% |
| !! | ACCAATTACTCTTCTTTTTA+TGG | + | chr8_1:60382338-60382357 | None:intergenic | 25.0% |
| !!! | ATGAAATGATGTTAGTTTTC+TGG | - | chr8_1:60382810-60382829 | Msa1204600:intron | 25.0% |
| ! | CTAGTGAAAGATTCATTAAA+TGG | - | chr8_1:60381236-60381255 | Msa1204600:CDS | 25.0% |
| ! | AAACATGAAACTTGAAAGTT+GGG | + | chr8_1:60381488-60381507 | None:intergenic | 25.0% |
| ! | TAAACATGAAACTTGAAAGT+TGG | + | chr8_1:60381489-60381508 | None:intergenic | 25.0% |
| ! | ATAGTTAACATAGTACAATG+TGG | - | chr8_1:60382149-60382168 | Msa1204600:CDS | 25.0% |
| ! | CTAACCAAAATCTAAGTTTA+AGG | - | chr8_1:60382232-60382251 | Msa1204600:CDS | 25.0% |
| ! | ACCATAAAAAGAAGAGTAAT+TGG | - | chr8_1:60382334-60382353 | Msa1204600:CDS | 25.0% |
| !! | ACCAATTACTCTTCTTTTTA+TGG | + | chr8_1:60382338-60382357 | None:intergenic | 25.0% |
| !!! | ATGAAATGATGTTAGTTTTC+TGG | - | chr8_1:60382810-60382829 | Msa1204600:intron | 25.0% |
| TGCATCATTCTTTACATTGA+TGG | - | chr8_1:60381277-60381296 | Msa1204600:intron | 30.0% | |
| ATATCCATAACTTGACATGA+AGG | + | chr8_1:60381411-60381430 | None:intergenic | 30.0% | |
| AACATGAAACTTGAAAGTTG+GGG | + | chr8_1:60381487-60381506 | None:intergenic | 30.0% | |
| ! | CACACCTTAAACTTAGATTT+TGG | + | chr8_1:60382239-60382258 | None:intergenic | 30.0% |
| TATTCATATTTGGATCTGGA+TGG | + | chr8_1:60382421-60382440 | None:intergenic | 30.0% | |
| ATTAACAGTTACTGATGATC+TGG | - | chr8_1:60382639-60382658 | Msa1204600:intron | 30.0% | |
| TTAACAGTTACTGATGATCT+GGG | - | chr8_1:60382640-60382659 | Msa1204600:intron | 30.0% | |
| !!! | TGTTCCATTTTTTTTCAGAG+TGG | - | chr8_1:60382940-60382959 | Msa1204600:CDS | 30.0% |
| TGCATCATTCTTTACATTGA+TGG | - | chr8_1:60381277-60381296 | Msa1204600:intron | 30.0% | |
| ATATCCATAACTTGACATGA+AGG | + | chr8_1:60381411-60381430 | None:intergenic | 30.0% | |
| AACATGAAACTTGAAAGTTG+GGG | + | chr8_1:60381487-60381506 | None:intergenic | 30.0% | |
| ! | CACACCTTAAACTTAGATTT+TGG | + | chr8_1:60382239-60382258 | None:intergenic | 30.0% |
| TATTCATATTTGGATCTGGA+TGG | + | chr8_1:60382421-60382440 | None:intergenic | 30.0% | |
| ATTAACAGTTACTGATGATC+TGG | - | chr8_1:60382639-60382658 | Msa1204600:intron | 30.0% | |
| TTAACAGTTACTGATGATCT+GGG | - | chr8_1:60382640-60382659 | Msa1204600:intron | 30.0% | |
| !!! | TGTTCCATTTTTTTTCAGAG+TGG | - | chr8_1:60382940-60382959 | Msa1204600:CDS | 30.0% |
| !!! | GGTTTTTCAAGCTACATTTG+AGG | - | chr8_1:60381373-60381392 | Msa1204600:intron | 35.0% |
| ACATCCTTCATGTCAAGTTA+TGG | - | chr8_1:60381404-60381423 | Msa1204600:intron | 35.0% | |
| GTTAATACACTGAAGAGAGT+CGG | + | chr8_1:60381454-60381473 | None:intergenic | 35.0% | |
| TATTCATCTTGTCTCCCATA+CGG | - | chr8_1:60381612-60381631 | Msa1204600:intron | 35.0% | |
| ! | AAGATAAAGGGTGTACTATC+TGG | - | chr8_1:60382463-60382482 | Msa1204600:intron | 35.0% |
| ! | TGCTCCACTCTGAAAAAAAA+TGG | + | chr8_1:60382947-60382966 | None:intergenic | 35.0% |
| !!! | GGTTTTTCAAGCTACATTTG+AGG | - | chr8_1:60381373-60381392 | Msa1204600:intron | 35.0% |
| ACATCCTTCATGTCAAGTTA+TGG | - | chr8_1:60381404-60381423 | Msa1204600:intron | 35.0% | |
| GTTAATACACTGAAGAGAGT+CGG | + | chr8_1:60381454-60381473 | None:intergenic | 35.0% | |
| TATTCATCTTGTCTCCCATA+CGG | - | chr8_1:60381612-60381631 | Msa1204600:intron | 35.0% | |
| ! | AAGATAAAGGGTGTACTATC+TGG | - | chr8_1:60382463-60382482 | Msa1204600:intron | 35.0% |
| ! | TGCTCCACTCTGAAAAAAAA+TGG | + | chr8_1:60382947-60382966 | None:intergenic | 35.0% |
| ! | TACATTGATGGTAGTTGCCT+AGG | - | chr8_1:60381289-60381308 | Msa1204600:intron | 40.0% |
| TTGTTCTTCTTTCCCTTGCT+TGG | + | chr8_1:60381962-60381981 | None:intergenic | 40.0% | |
| GGAAAGAAGAACAAGAAGCA+CGG | - | chr8_1:60381968-60381987 | Msa1204600:intron | 40.0% | |
| AAGATTTACCTCATCGTTCG+CGG | + | chr8_1:60382092-60382111 | None:intergenic | 40.0% | |
| !!! | GAGCTGTCGTTTTTGTTTTC+TGG | - | chr8_1:60382383-60382402 | Msa1204600:intron | 40.0% |
| ! | TACATTGATGGTAGTTGCCT+AGG | - | chr8_1:60381289-60381308 | Msa1204600:intron | 40.0% |
| TTGTTCTTCTTTCCCTTGCT+TGG | + | chr8_1:60381962-60381981 | None:intergenic | 40.0% | |
| GGAAAGAAGAACAAGAAGCA+CGG | - | chr8_1:60381968-60381987 | Msa1204600:intron | 40.0% | |
| AAGATTTACCTCATCGTTCG+CGG | + | chr8_1:60382092-60382111 | None:intergenic | 40.0% | |
| !!! | GAGCTGTCGTTTTTGTTTTC+TGG | - | chr8_1:60382383-60382402 | Msa1204600:intron | 40.0% |
| ! | CTTGAAAGTTGGGGCTTTGA+TGG | + | chr8_1:60381478-60381497 | None:intergenic | 45.0% |
| ACGCAAGAGATCATCCGTAT+GGG | + | chr8_1:60381629-60381648 | None:intergenic | 45.0% | |
| TACGCAAGAGATCATCCGTA+TGG | + | chr8_1:60381630-60381649 | None:intergenic | 45.0% | |
| GGTGTAGGAGACACCTTATT+AGG | - | chr8_1:60382286-60382305 | Msa1204600:CDS | 45.0% | |
| AGAGTGGAGCAGAAACTATC+AGG | - | chr8_1:60382956-60382975 | Msa1204600:CDS | 45.0% | |
| ATCAGGAGCTTGAAGATGCT+AGG | - | chr8_1:60382973-60382992 | Msa1204600:CDS | 45.0% | |
| ! | CTTGAAAGTTGGGGCTTTGA+TGG | + | chr8_1:60381478-60381497 | None:intergenic | 45.0% |
| ACGCAAGAGATCATCCGTAT+GGG | + | chr8_1:60381629-60381648 | None:intergenic | 45.0% | |
| TACGCAAGAGATCATCCGTA+TGG | + | chr8_1:60381630-60381649 | None:intergenic | 45.0% | |
| GGTGTAGGAGACACCTTATT+AGG | - | chr8_1:60382286-60382305 | Msa1204600:CDS | 45.0% | |
| AGAGTGGAGCAGAAACTATC+AGG | - | chr8_1:60382956-60382975 | Msa1204600:CDS | 45.0% | |
| ATCAGGAGCTTGAAGATGCT+AGG | - | chr8_1:60382973-60382992 | Msa1204600:CDS | 45.0% | |
| !!! | TTATTTATTTTATTCATATT+TGG | + | chr8_1:60382431-60382450 | None:intergenic | 5.0% |
| !! | TGAATAAAATAAATAAAATA+AGG | - | chr8_1:60382435-60382454 | Msa1204600:intron | 5.0% |
| !!! | TTATTTATTTTATTCATATT+TGG | + | chr8_1:60382431-60382450 | None:intergenic | 5.0% |
| !! | TGAATAAAATAAATAAAATA+AGG | - | chr8_1:60382435-60382454 | Msa1204600:intron | 5.0% |
| ! | CCACATTAGCCAGCTCTAAC+GGG | + | chr8_1:60381319-60381338 | None:intergenic | 50.0% |
| ! | CCCACATTAGCCAGCTCTAA+CGG | + | chr8_1:60381320-60381339 | None:intergenic | 50.0% |
| CCGTTAGAGCTGGCTAATGT+GGG | - | chr8_1:60381317-60381336 | Msa1204600:intron | 50.0% | |
| CGTTAGAGCTGGCTAATGTG+GGG | - | chr8_1:60381318-60381337 | Msa1204600:intron | 50.0% | |
| GATTTGACAGGAACTGGTGC+TGG | + | chr8_1:60381851-60381870 | None:intergenic | 50.0% | |
| GGTGGTGATTTGACAGGAAC+TGG | + | chr8_1:60381857-60381876 | None:intergenic | 50.0% | |
| !! | TTCTTTCCCTTGCTTGGTGC+TGG | + | chr8_1:60381956-60381975 | None:intergenic | 50.0% |
| AGGAGCTTGAAGATGCTAGG+AGG | - | chr8_1:60382976-60382995 | Msa1204600:CDS | 50.0% | |
| !! | TAGGAGGCTTAGCTTTGAGC+TGG | - | chr8_1:60382992-60383011 | Msa1204600:CDS | 50.0% |
| !! | AGGCTTAGCTTTGAGCTGGA+TGG | - | chr8_1:60382996-60383015 | Msa1204600:CDS | 50.0% |
| ! | CCACATTAGCCAGCTCTAAC+GGG | + | chr8_1:60381319-60381338 | None:intergenic | 50.0% |
| ! | CCCACATTAGCCAGCTCTAA+CGG | + | chr8_1:60381320-60381339 | None:intergenic | 50.0% |
| CCGTTAGAGCTGGCTAATGT+GGG | - | chr8_1:60381317-60381336 | Msa1204600:intron | 50.0% | |
| CGTTAGAGCTGGCTAATGTG+GGG | - | chr8_1:60381318-60381337 | Msa1204600:intron | 50.0% | |
| GATTTGACAGGAACTGGTGC+TGG | + | chr8_1:60381851-60381870 | None:intergenic | 50.0% | |
| GGTGGTGATTTGACAGGAAC+TGG | + | chr8_1:60381857-60381876 | None:intergenic | 50.0% | |
| !! | TTCTTTCCCTTGCTTGGTGC+TGG | + | chr8_1:60381956-60381975 | None:intergenic | 50.0% |
| AGGAGCTTGAAGATGCTAGG+AGG | - | chr8_1:60382976-60382995 | Msa1204600:CDS | 50.0% | |
| !! | TAGGAGGCTTAGCTTTGAGC+TGG | - | chr8_1:60382992-60383011 | Msa1204600:CDS | 50.0% |
| !! | AGGCTTAGCTTTGAGCTGGA+TGG | - | chr8_1:60382996-60383015 | Msa1204600:CDS | 50.0% |
| CCCGTTAGAGCTGGCTAATG+TGG | - | chr8_1:60381316-60381335 | Msa1204600:intron | 55.0% | |
| ! | TTGACAGGAACTGGTGCTGG+TGG | + | chr8_1:60381848-60381867 | None:intergenic | 55.0% |
| GGTGTGGGTGGTGATTTGAC+AGG | + | chr8_1:60381863-60381882 | None:intergenic | 55.0% | |
| ACCACCAGCAGTAACACCTG+TGG | - | chr8_1:60381898-60381917 | Msa1204600:intron | 55.0% | |
| !! | AACAACGCTGGTGATGGTGC+TGG | + | chr8_1:60381998-60382017 | None:intergenic | 55.0% |
| AGCACCATCACCAGCGTTGT+TGG | - | chr8_1:60381997-60382016 | Msa1204600:intron | 55.0% | |
| GCACCATCACCAGCGTTGTT+GGG | - | chr8_1:60381998-60382017 | Msa1204600:intron | 55.0% | |
| TCATCGTTCGCGGTAGAAGC+GGG | + | chr8_1:60382082-60382101 | None:intergenic | 55.0% | |
| CTCATCGTTCGCGGTAGAAG+CGG | + | chr8_1:60382083-60382102 | None:intergenic | 55.0% | |
| TACACCGAACCCACCGTCAA+TGG | + | chr8_1:60382272-60382291 | None:intergenic | 55.0% | |
| !! | ATTGACGGTGGGTTCGGTGT+AGG | - | chr8_1:60382271-60382290 | Msa1204600:CDS | 55.0% |
| CCCGTTAGAGCTGGCTAATG+TGG | - | chr8_1:60381316-60381335 | Msa1204600:intron | 55.0% | |
| ! | TTGACAGGAACTGGTGCTGG+TGG | + | chr8_1:60381848-60381867 | None:intergenic | 55.0% |
| GGTGTGGGTGGTGATTTGAC+AGG | + | chr8_1:60381863-60381882 | None:intergenic | 55.0% | |
| ACCACCAGCAGTAACACCTG+TGG | - | chr8_1:60381898-60381917 | Msa1204600:intron | 55.0% | |
| !! | AACAACGCTGGTGATGGTGC+TGG | + | chr8_1:60381998-60382017 | None:intergenic | 55.0% |
| AGCACCATCACCAGCGTTGT+TGG | - | chr8_1:60381997-60382016 | Msa1204600:intron | 55.0% | |
| GCACCATCACCAGCGTTGTT+GGG | - | chr8_1:60381998-60382017 | Msa1204600:intron | 55.0% | |
| TCATCGTTCGCGGTAGAAGC+GGG | + | chr8_1:60382082-60382101 | None:intergenic | 55.0% | |
| CTCATCGTTCGCGGTAGAAG+CGG | + | chr8_1:60382083-60382102 | None:intergenic | 55.0% | |
| TACACCGAACCCACCGTCAA+TGG | + | chr8_1:60382272-60382291 | None:intergenic | 55.0% | |
| !! | ATTGACGGTGGGTTCGGTGT+AGG | - | chr8_1:60382271-60382290 | Msa1204600:CDS | 55.0% |
| ! | CAGCTCTAACGGGCAAGCCT+AGG | + | chr8_1:60381309-60381328 | None:intergenic | 60.0% |
| CTAGGCTTGCCCGTTAGAGC+TGG | - | chr8_1:60381307-60381326 | Msa1204600:intron | 60.0% | |
| !! | ACAGGAACTGGTGCTGGTGG+TGG | + | chr8_1:60381845-60381864 | None:intergenic | 60.0% |
| GAGCTGACTGGAGCAGGTGT+GGG | + | chr8_1:60381878-60381897 | None:intergenic | 60.0% | |
| TGAGCTGACTGGAGCAGGTG+TGG | + | chr8_1:60381879-60381898 | None:intergenic | 60.0% | |
| ! | ACTGCTGGTGGTGAGCTGAC+TGG | + | chr8_1:60381890-60381909 | None:intergenic | 60.0% |
| !! | GCCACAGGTGTTACTGCTGG+TGG | + | chr8_1:60381902-60381921 | None:intergenic | 60.0% |
| !! | GCAGCCACAGGTGTTACTGC+TGG | + | chr8_1:60381905-60381924 | None:intergenic | 60.0% |
| TGCTCCAACCACCACACCAG+CGG | - | chr8_1:60381922-60381941 | Msa1204600:intron | 60.0% | |
| TCCAGCTCCAGCACCAAGCA+AGG | - | chr8_1:60381946-60381965 | Msa1204600:intron | 60.0% | |
| CCAGCTCCAGCACCAAGCAA+GGG | - | chr8_1:60381947-60381966 | Msa1204600:intron | 60.0% | |
| GGACCCAACAACGCTGGTGA+TGG | + | chr8_1:60382004-60382023 | None:intergenic | 60.0% | |
| CCTGCATCTTCGCTTGGTCC+AGG | + | chr8_1:60382049-60382068 | None:intergenic | 60.0% | |
| CCTGGACCAAGCGAAGATGC+AGG | - | chr8_1:60382046-60382065 | Msa1204600:intron | 60.0% | |
| GGTGCTCCTGCATCTTCGCT+TGG | + | chr8_1:60382055-60382074 | None:intergenic | 60.0% | |
| !! | AGCGAAGATGCAGGAGCACC+TGG | - | chr8_1:60382055-60382074 | Msa1204600:intron | 60.0% |
| CGCTTCTACCGCGAACGATG+AGG | - | chr8_1:60382081-60382100 | Msa1204600:intron | 60.0% | |
| ! | GCCACCATTGACGGTGGGTT+CGG | - | chr8_1:60382265-60382284 | Msa1204600:CDS | 60.0% |
| ACCGAACCCACCGTCAATGG+TGG | + | chr8_1:60382269-60382288 | None:intergenic | 60.0% | |
| ! | CAGCTCTAACGGGCAAGCCT+AGG | + | chr8_1:60381309-60381328 | None:intergenic | 60.0% |
| CTAGGCTTGCCCGTTAGAGC+TGG | - | chr8_1:60381307-60381326 | Msa1204600:intron | 60.0% | |
| !! | ACAGGAACTGGTGCTGGTGG+TGG | + | chr8_1:60381845-60381864 | None:intergenic | 60.0% |
| GAGCTGACTGGAGCAGGTGT+GGG | + | chr8_1:60381878-60381897 | None:intergenic | 60.0% | |
| TGAGCTGACTGGAGCAGGTG+TGG | + | chr8_1:60381879-60381898 | None:intergenic | 60.0% | |
| ! | ACTGCTGGTGGTGAGCTGAC+TGG | + | chr8_1:60381890-60381909 | None:intergenic | 60.0% |
| !! | GCCACAGGTGTTACTGCTGG+TGG | + | chr8_1:60381902-60381921 | None:intergenic | 60.0% |
| !! | GCAGCCACAGGTGTTACTGC+TGG | + | chr8_1:60381905-60381924 | None:intergenic | 60.0% |
| TGCTCCAACCACCACACCAG+CGG | - | chr8_1:60381922-60381941 | Msa1204600:intron | 60.0% | |
| TCCAGCTCCAGCACCAAGCA+AGG | - | chr8_1:60381946-60381965 | Msa1204600:intron | 60.0% | |
| CCAGCTCCAGCACCAAGCAA+GGG | - | chr8_1:60381947-60381966 | Msa1204600:intron | 60.0% | |
| GGACCCAACAACGCTGGTGA+TGG | + | chr8_1:60382004-60382023 | None:intergenic | 60.0% | |
| CCTGCATCTTCGCTTGGTCC+AGG | + | chr8_1:60382049-60382068 | None:intergenic | 60.0% | |
| CCTGGACCAAGCGAAGATGC+AGG | - | chr8_1:60382046-60382065 | Msa1204600:intron | 60.0% | |
| GGTGCTCCTGCATCTTCGCT+TGG | + | chr8_1:60382055-60382074 | None:intergenic | 60.0% | |
| !! | AGCGAAGATGCAGGAGCACC+TGG | - | chr8_1:60382055-60382074 | Msa1204600:intron | 60.0% |
| CGCTTCTACCGCGAACGATG+AGG | - | chr8_1:60382081-60382100 | Msa1204600:intron | 60.0% | |
| ! | GCCACCATTGACGGTGGGTT+CGG | - | chr8_1:60382265-60382284 | Msa1204600:CDS | 60.0% |
| ACCGAACCCACCGTCAATGG+TGG | + | chr8_1:60382269-60382288 | None:intergenic | 60.0% | |
| !! | GTGCTGACTGGTGTCACCGC+CGG | + | chr8_1:60381821-60381840 | None:intergenic | 65.0% |
| !! | GCTGGTGGTGGAGTGCTGAC+TGG | + | chr8_1:60381833-60381852 | None:intergenic | 65.0% |
| CTGACTGGAGCAGGTGTGGG+TGG | + | chr8_1:60381875-60381894 | None:intergenic | 65.0% | |
| GGTGGTGAGCTGACTGGAGC+AGG | + | chr8_1:60381884-60381903 | None:intergenic | 65.0% | |
| GTGGTGGTTGGAGCAGCCAC+AGG | + | chr8_1:60381917-60381936 | None:intergenic | 65.0% | |
| GGAACCGCTGGTGTGGTGGT+TGG | + | chr8_1:60381929-60381948 | None:intergenic | 65.0% | |
| AGCTGGAACCGCTGGTGTGG+TGG | + | chr8_1:60381933-60381952 | None:intergenic | 65.0% | |
| TGGAGCTGGAACCGCTGGTG+TGG | + | chr8_1:60381936-60381955 | None:intergenic | 65.0% | |
| !! | CCCTTGCTTGGTGCTGGAGC+TGG | + | chr8_1:60381950-60381969 | None:intergenic | 65.0% |
| ! | GCTGGTGGACCCAACAACGC+TGG | + | chr8_1:60382010-60382029 | None:intergenic | 65.0% |
| CTTGGTCCAGGTGCTCCTGC+TGG | + | chr8_1:60382037-60382056 | None:intergenic | 65.0% | |
| TTCGCGGTAGAAGCGGGTCC+AGG | + | chr8_1:60382076-60382095 | None:intergenic | 65.0% | |
| GTGCCACGCGCCACCATTGA+CGG | - | chr8_1:60382256-60382275 | Msa1204600:CDS | 65.0% | |
| CACGCGCCACCATTGACGGT+GGG | - | chr8_1:60382260-60382279 | Msa1204600:CDS | 65.0% | |
| !! | GTGCTGACTGGTGTCACCGC+CGG | + | chr8_1:60381821-60381840 | None:intergenic | 65.0% |
| !! | GCTGGTGGTGGAGTGCTGAC+TGG | + | chr8_1:60381833-60381852 | None:intergenic | 65.0% |
| CTGACTGGAGCAGGTGTGGG+TGG | + | chr8_1:60381875-60381894 | None:intergenic | 65.0% | |
| GGTGGTGAGCTGACTGGAGC+AGG | + | chr8_1:60381884-60381903 | None:intergenic | 65.0% | |
| GTGGTGGTTGGAGCAGCCAC+AGG | + | chr8_1:60381917-60381936 | None:intergenic | 65.0% | |
| GGAACCGCTGGTGTGGTGGT+TGG | + | chr8_1:60381929-60381948 | None:intergenic | 65.0% | |
| AGCTGGAACCGCTGGTGTGG+TGG | + | chr8_1:60381933-60381952 | None:intergenic | 65.0% | |
| TGGAGCTGGAACCGCTGGTG+TGG | + | chr8_1:60381936-60381955 | None:intergenic | 65.0% | |
| !! | CCCTTGCTTGGTGCTGGAGC+TGG | + | chr8_1:60381950-60381969 | None:intergenic | 65.0% |
| ! | GCTGGTGGACCCAACAACGC+TGG | + | chr8_1:60382010-60382029 | None:intergenic | 65.0% |
| CTTGGTCCAGGTGCTCCTGC+TGG | + | chr8_1:60382037-60382056 | None:intergenic | 65.0% | |
| TTCGCGGTAGAAGCGGGTCC+AGG | + | chr8_1:60382076-60382095 | None:intergenic | 65.0% | |
| GTGCCACGCGCCACCATTGA+CGG | - | chr8_1:60382256-60382275 | Msa1204600:CDS | 65.0% | |
| CACGCGCCACCATTGACGGT+GGG | - | chr8_1:60382260-60382279 | Msa1204600:CDS | 65.0% | |
| !! | CTGACTGGTGTCACCGCCGG+TGG | + | chr8_1:60381818-60381837 | None:intergenic | 70.0% |
| ! | GGTGCTGGAGCTGGAACCGC+TGG | + | chr8_1:60381941-60381960 | None:intergenic | 70.0% |
| GGTCCACCAGCACCACCAGC+AGG | - | chr8_1:60382019-60382038 | Msa1204600:intron | 70.0% | |
| ! | GCTCCTGCTGGTGGTGCTGG+TGG | + | chr8_1:60382025-60382044 | None:intergenic | 70.0% |
| ! | GGTGCTCCTGCTGGTGGTGC+TGG | + | chr8_1:60382028-60382047 | None:intergenic | 70.0% |
| !! | GCACCACCAGCAGGAGCACC+TGG | - | chr8_1:60382028-60382047 | Msa1204600:intron | 70.0% |
| GGTCCAGGTGCTCCTGCTGG+TGG | + | chr8_1:60382034-60382053 | None:intergenic | 70.0% | |
| ! | CCACCGTCAATGGTGGCGCG+TGG | + | chr8_1:60382262-60382281 | None:intergenic | 70.0% |
| CCACGCGCCACCATTGACGG+TGG | - | chr8_1:60382259-60382278 | Msa1204600:CDS | 70.0% | |
| !! | CTGACTGGTGTCACCGCCGG+TGG | + | chr8_1:60381818-60381837 | None:intergenic | 70.0% |
| ! | GGTGCTGGAGCTGGAACCGC+TGG | + | chr8_1:60381941-60381960 | None:intergenic | 70.0% |
| GGTCCACCAGCACCACCAGC+AGG | - | chr8_1:60382019-60382038 | Msa1204600:intron | 70.0% | |
| ! | GCTCCTGCTGGTGGTGCTGG+TGG | + | chr8_1:60382025-60382044 | None:intergenic | 70.0% |
| ! | GGTGCTCCTGCTGGTGGTGC+TGG | + | chr8_1:60382028-60382047 | None:intergenic | 70.0% |
| !! | GCACCACCAGCAGGAGCACC+TGG | - | chr8_1:60382028-60382047 | Msa1204600:intron | 70.0% |
| GGTCCAGGTGCTCCTGCTGG+TGG | + | chr8_1:60382034-60382053 | None:intergenic | 70.0% | |
| ! | CCACCGTCAATGGTGGCGCG+TGG | + | chr8_1:60382262-60382281 | None:intergenic | 70.0% |
| CCACGCGCCACCATTGACGG+TGG | - | chr8_1:60382259-60382278 | Msa1204600:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 60381187 | 60383038 | 60381187 | ID=Msa1204600;Name=Msa1204600 |
| chr8_1 | mRNA | 60381187 | 60383038 | 60381187 | ID=Msa1204600-mRNA-1;Parent=Msa1204600;Name=Msa1204600-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0.33|0.25|4|0|188 |
| chr8_1 | exon | 60382927 | 60383038 | 60382927 | ID=Msa1204600-mRNA-1:exon:19587;Parent=Msa1204600-mRNA-1 |
| chr8_1 | exon | 60382676 | 60382804 | 60382676 | ID=Msa1204600-mRNA-1:exon:19586;Parent=Msa1204600-mRNA-1 |
| chr8_1 | exon | 60382123 | 60382367 | 60382123 | ID=Msa1204600-mRNA-1:exon:19585;Parent=Msa1204600-mRNA-1 |
| chr8_1 | exon | 60381187 | 60381267 | 60381187 | ID=Msa1204600-mRNA-1:exon:19584;Parent=Msa1204600-mRNA-1 |
| chr8_1 | CDS | 60382927 | 60383038 | 60382927 | ID=Msa1204600-mRNA-1:cds;Parent=Msa1204600-mRNA-1 |
| chr8_1 | CDS | 60382676 | 60382804 | 60382676 | ID=Msa1204600-mRNA-1:cds;Parent=Msa1204600-mRNA-1 |
| chr8_1 | CDS | 60382123 | 60382367 | 60382123 | ID=Msa1204600-mRNA-1:cds;Parent=Msa1204600-mRNA-1 |
| chr8_1 | CDS | 60381187 | 60381267 | 60381187 | ID=Msa1204600-mRNA-1:cds;Parent=Msa1204600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
