AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0014410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0014410 MtrunA17_Chr1g0164721 95.807 477 20 0 1 477 1 477 0.0 940
Msa0014410 MtrunA17_Chr2g0319981 32.432 222 139 4 51 270 53 265 1.09e-29 119
Msa0014410 MtrunA17_Chr4g0041461 33.621 232 128 6 37 253 29 249 1.71e-28 115
Msa0014410 MtrunA17_Chr1g0164711 52.113 71 28 2 139 208 2 67 3.42e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0014410 AT5G23240.1 52.681 429 191 3 53 475 37 459 1.29e-157 455
Msa0014410 AT2G42750.1 31.944 216 136 4 57 270 65 271 2.54e-28 115

Find 89 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAACAGTAGACATGTTTA+TGG 0.185098 1_1:+22870054 None:intergenic
CTGACATTCTTGATTCTCTT+TGG 0.194662 1_1:+22867484 None:intergenic
TTTGACTTGTATGATCTTCT+AGG 0.212676 1_1:-22869902 Msa0014410:CDS
CAATTTCCAACTGGTTATAT+TGG 0.229177 1_1:-22867443 Msa0014410:CDS
CCTGATATTGCTGGTCCTTC+TGG 0.231877 1_1:-22869812 Msa0014410:CDS
TCTCTTAGCTTACTAAGATT+TGG 0.253936 1_1:+22867357 None:intergenic
ACCGGCAATCCCCATCTAAT+TGG 0.268405 1_1:+22867117 None:intergenic
CCATTCATCCTGAGGAATAT+TGG 0.276497 1_1:-22867272 Msa0014410:CDS
TTGGTGCCAGTTGCACTATT+TGG 0.284345 1_1:+22867417 None:intergenic
TCCAATTAGATGGGGATTGC+CGG 0.327835 1_1:-22867118 Msa0014410:CDS
ATGGTTTGAGTTTGAGAATA+AGG 0.336019 1_1:+22870073 None:intergenic
ATGAAAATAGTCCAATTAGA+TGG 0.341134 1_1:-22867128 Msa0014410:CDS
TTGGGGAGGTTCTCTAGCTT+TGG 0.348620 1_1:-22867019 Msa0014410:CDS
ATTTGAAGGGGTTGTATGTT+TGG 0.350457 1_1:+22867296 None:intergenic
CCGGTGGTTACTTCATTGTT+TGG 0.356288 1_1:-22867099 Msa0014410:CDS
TTTGCTATAGAATCAGTTTA+CGG 0.380606 1_1:-22868704 Msa0014410:CDS
CCAGAAGGACCAGCAATATC+AGG 0.385817 1_1:+22869812 None:intergenic
TGGTCCTTCTGGTCATGATA+TGG 0.387346 1_1:-22869801 Msa0014410:CDS
GATACATGTAATATTAAGTT+AGG 0.400116 1_1:-22866825 Msa0014410:three_prime_UTR
TGGAAATCGTTAACAGCTCT+TGG 0.411043 1_1:-22866999 Msa0014410:CDS
TTGCTATAGAATCAGTTTAC+GGG 0.412162 1_1:-22868703 Msa0014410:CDS
AGTTGAGTTGAAAGAGCATT+GGG 0.412413 1_1:-22867037 Msa0014410:CDS
CGATGTCATCCTGATATTGC+TGG 0.415641 1_1:-22869821 Msa0014410:CDS
ACATTCTTGATTCTCTTTGG+AGG 0.428803 1_1:+22867487 None:intergenic
ACAGAATTCAAAGGCTTCAC+TGG 0.429274 1_1:-22868839 Msa0014410:CDS
GAAGGAAGAACAACAGTTGA+TGG 0.432900 1_1:+22867246 None:intergenic
GAAAATGTAGGCTTCTCAAT+TGG 0.439386 1_1:+22867198 None:intergenic
TCGATTTCTATTTCCAATGT+TGG 0.441877 1_1:+22866912 None:intergenic
CCAATATTCCTCAGGATGAA+TGG 0.445444 1_1:+22867272 None:intergenic
TGGCAACCAAATAGTGCAAC+TGG 0.446692 1_1:-22867423 Msa0014410:CDS
TCATAGGCAAAACGAGCAAA+TGG 0.458278 1_1:+22869740 None:intergenic
ATAGACGTACATAATAATAT+AGG 0.460141 1_1:-22866890 Msa0014410:exon
GAAGACCATTGTATTCAGTA+TGG 0.460686 1_1:-22868817 Msa0014410:CDS
TGAAAATAGTCCAATTAGAT+GGG 0.463058 1_1:-22867127 Msa0014410:CDS
TTCACTCACCTGAGAATACT+TGG 0.463364 1_1:+22868153 None:intergenic
GCAGTTAGGTTACATGAAGT+TGG 0.469565 1_1:-22867069 Msa0014410:CDS
AGATTAACTAACCTTATCAT+AGG 0.473634 1_1:+22869724 None:intergenic
GGTTACTTCATTGTTTGGTA+TGG 0.474133 1_1:-22867094 Msa0014410:CDS
CAATAAGATCAATTTCCAAC+TGG 0.475149 1_1:-22867452 Msa0014410:CDS
GCAGCTACATGGTATGTGAT+TGG 0.477504 1_1:-22866958 Msa0014410:CDS
AAGGGTTGCTGTAGAATTTG+TGG 0.483426 1_1:-22866935 Msa0014410:CDS
AGCTTACTAAGATTTGGATC+AGG 0.486859 1_1:+22867363 None:intergenic
AGCAAGGGTTGTTTCTCAGT+GGG 0.492283 1_1:-22868678 Msa0014410:CDS
AGCAAATGGATCGGAAAGAA+TGG 0.495584 1_1:+22869754 None:intergenic
TGTTTGGTATGGCTGCAGTT+AGG 0.496837 1_1:-22867083 Msa0014410:CDS
TCAGGATGAATGGAATTTGA+AGG 0.499111 1_1:+22867282 None:intergenic
GAACTCTAAAGCAGCAAGGT+TGG 0.499700 1_1:+22868306 None:intergenic
CAGTTGAGTTGAAAGAGCAT+TGG 0.510120 1_1:-22867038 Msa0014410:CDS
GTAGTAGTACTAGTTGAAGA+AGG 0.518499 1_1:+22867228 None:intergenic
CTCTAACATATTTGTAGATG+TGG 0.521122 1_1:-22868218 Msa0014410:CDS
CTCTTGGTTGCAATATATGT+TGG 0.521916 1_1:-22866983 Msa0014410:CDS
GTCGATGAAGTAAAATGTGT+TGG 0.524428 1_1:-22868761 Msa0014410:CDS
AATCAGTTTACGGGAGAGCA+AGG 0.525112 1_1:-22868694 Msa0014410:CDS
AAAAGCTACCAAGTATTCTC+AGG 0.534346 1_1:-22868161 Msa0014410:intron
GATGGAGTCCAATATTCCTC+AGG 0.534720 1_1:+22867264 None:intergenic
CAGGATGAATGGAATTTGAA+GGG 0.535395 1_1:+22867283 None:intergenic
CTACATGGTATGTGATTGGA+AGG 0.538431 1_1:-22866954 Msa0014410:CDS
GTAGGTGCAAGTCATACAGC+AGG 0.546276 1_1:-22868250 Msa0014410:CDS
GTAGAATTTGTGGCCAACAT+TGG 0.550242 1_1:-22866925 Msa0014410:CDS
TTCTTCCCTTTAGAAAATGT+AGG 0.554820 1_1:+22867186 None:intergenic
ACTTACGAAATGCAGTTGAC+AGG 0.558378 1_1:+22868614 None:intergenic
TTCAAATTCCATTCATCCTG+AGG 0.561859 1_1:-22867280 Msa0014410:CDS
GAGCAAGGGTTGTTTCTCAG+TGG 0.571278 1_1:-22868679 Msa0014410:CDS
ATATGTTGGTAGCAGCTACA+TGG 0.578806 1_1:-22866969 Msa0014410:CDS
ACATATTTGTAGATGTGGAG+AGG 0.591397 1_1:-22868213 Msa0014410:CDS
CCACGTGGCAATGTAAGAGT+AGG 0.594070 1_1:-22868268 Msa0014410:CDS
AATTAGATGGGGATTGCCGG+TGG 0.594577 1_1:-22867115 Msa0014410:CDS
GAATAAGGTGTGGCAGCAAG+AGG 0.595766 1_1:+22870088 None:intergenic
ATCAGTTTACGGGAGAGCAA+GGG 0.595955 1_1:-22868693 Msa0014410:CDS
GCAAAGATCACAGAATTCAA+AGG 0.599426 1_1:-22868848 Msa0014410:CDS
TGGCTCACAAAGTGAGCAGA+GGG 0.607198 1_1:-22868792 Msa0014410:CDS
TGGTTGCCAATATAACCAGT+TGG 0.622071 1_1:+22867437 None:intergenic
GGCAAAACGAGCAAATGGAT+CGG 0.622525 1_1:+22869745 None:intergenic
AGGATGAATGGAATTTGAAG+GGG 0.635507 1_1:+22867284 None:intergenic
GAGTTGAAAGAGCATTGGGG+AGG 0.639356 1_1:-22867033 Msa0014410:CDS
GAAAATAGTCCAATTAGATG+GGG 0.640775 1_1:-22867126 Msa0014410:CDS
ATAGCCATATCATGACCAGA+AGG 0.649543 1_1:+22869797 None:intergenic
CCAAACAATGAAGTAACCAC+CGG 0.651004 1_1:+22867099 None:intergenic
GTGGCTCACAAAGTGAGCAG+AGG 0.657763 1_1:-22868793 Msa0014410:CDS
TCAAGAACTCTAAAGCAGCA+AGG 0.659080 1_1:+22868302 None:intergenic
CCATTGTATTCAGTATGGTG+TGG 0.665074 1_1:-22868812 Msa0014410:CDS
TGATCAGTCACAGATTAAGA+CGG 0.667093 1_1:-22869864 Msa0014410:CDS
CCACACCATACTGAATACAA+TGG 0.681005 1_1:+22868812 None:intergenic
ATACAAGTCAAAATCCAACA+TGG 0.696805 1_1:+22869913 None:intergenic
GTTGAGTTGAAAGAGCATTG+GGG 0.697316 1_1:-22867036 Msa0014410:CDS
TTGATGTCGAAGCAGCCACG+TGG 0.734249 1_1:-22868283 Msa0014410:CDS
CCTACTCTTACATTGCCACG+TGG 0.735405 1_1:+22868268 None:intergenic
TTGAGTTTGAGAATAAGGTG+TGG 0.756744 1_1:+22870078 None:intergenic
TACATGGTATGTGATTGGAA+GGG 0.767981 1_1:-22866953 Msa0014410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTTTAAAACATTTATATT+AGG + chr1_1:22867316-22867335 None:intergenic 10.0%
!!! ATTGAATTCTTATTTGTTTT+TGG - chr1_1:22868020-22868039 Msa0014410:intron 15.0%
!! CTTAAAATAGTAACTAGAAT+TGG + chr1_1:22867604-22867623 None:intergenic 20.0%
!!! AATATAATAGTTTGCACAAT+TGG - chr1_1:22867702-22867721 Msa0014410:intron 20.0%
!!! ATTCTTATTTGTTTTTGGTT+TGG - chr1_1:22868025-22868044 Msa0014410:intron 20.0%
!!! TGCAATTCTAAAAAATATCA+AGG + chr1_1:22868429-22868448 None:intergenic 20.0%
!! TAGATGTAACAAAAGAAAAA+AGG + chr1_1:22868557-22868576 None:intergenic 20.0%
!!! ATTGATTTTAGTATGTTTGA+AGG - chr1_1:22868851-22868870 Msa0014410:CDS 20.0%
!! ATAGACGTACATAATAATAT+AGG - chr1_1:22870042-22870061 Msa0014410:CDS 20.0%
!!! TTTTGGAAATTTGAAGGTTT+TGG + chr1_1:22866928-22866947 None:intergenic 25.0%
!!! TAGAAAAACAAGACTTGTTT+TGG + chr1_1:22866945-22866964 None:intergenic 25.0%
! AGATTAACTAACCTTATCAT+AGG + chr1_1:22867211-22867230 None:intergenic 25.0%
! TTAATCTATTACTCATGTCA+TGG - chr1_1:22867224-22867243 Msa0014410:CDS 25.0%
! TGGATACAAAAACTTAACAA+AGG + chr1_1:22867584-22867603 None:intergenic 25.0%
! GATTATAGTATGACAAAATG+TGG - chr1_1:22868050-22868069 Msa0014410:intron 25.0%
!! TTTGCTATAGAATCAGTTTA+CGG - chr1_1:22868228-22868247 Msa0014410:CDS 25.0%
! TGTATAAACCATTATGTATC+TGG - chr1_1:22868360-22868379 Msa0014410:intron 25.0%
! CTTGTGAGTTACTTAAATAT+TGG - chr1_1:22868391-22868410 Msa0014410:intron 25.0%
!! TTTAGAATTGCAGTCAAATA+CGG - chr1_1:22868437-22868456 Msa0014410:intron 25.0%
!! CCATTAATTTTCTTCAATTG+CGG - chr1_1:22868527-22868546 Msa0014410:intron 25.0%
! AAAGTGAGTTTATAGTGAAA+TGG + chr1_1:22869029-22869048 None:intergenic 25.0%
! TTCATATAAGCTATAAACTG+TGG - chr1_1:22869200-22869219 Msa0014410:intron 25.0%
! AATTTATCCTAAAGAGCTTA+TGG - chr1_1:22869227-22869246 Msa0014410:intron 25.0%
! TAATTCACAGTGAAATAATG+AGG + chr1_1:22869395-22869414 None:intergenic 25.0%
! ATGAAAATAGTCCAATTAGA+TGG - chr1_1:22869804-22869823 Msa0014410:CDS 25.0%
! TGAAAATAGTCCAATTAGAT+GGG - chr1_1:22869805-22869824 Msa0014410:CDS 25.0%
! ATGGTTTGAGTTTGAGAATA+AGG + chr1_1:22866862-22866881 None:intergenic 30.0%
TGTAACAGTAGACATGTTTA+TGG + chr1_1:22866881-22866900 None:intergenic 30.0%
!!! GACTTGTTTTGGAAATTTGA+AGG + chr1_1:22866934-22866953 None:intergenic 30.0%
ATACAAGTCAAAATCCAACA+TGG + chr1_1:22867022-22867041 None:intergenic 30.0%
!! TTTGACTTGTATGATCTTCT+AGG - chr1_1:22867030-22867049 Msa0014410:CDS 30.0%
ATTTCAGCAAAAACCAATTC+TGG + chr1_1:22867428-22867447 None:intergenic 30.0%
CACTGTGAATCATTATATTG+CGG + chr1_1:22867521-22867540 None:intergenic 30.0%
!! TTGGTTCTAAATTGAAATCC+CGG + chr1_1:22867553-22867572 None:intergenic 30.0%
! CTTAACAAAGGCACAAATAT+TGG + chr1_1:22867572-22867591 None:intergenic 30.0%
! TGCACAAAAGTTGTAGTTTT+AGG - chr1_1:22867777-22867796 Msa0014410:intron 30.0%
! ACTTTTCACCACAATCATTA+TGG - chr1_1:22867825-22867844 Msa0014410:intron 30.0%
CTGCTTGTAACTAAGAATTA+AGG - chr1_1:22867969-22867988 Msa0014410:intron 30.0%
TTGCTATAGAATCAGTTTAC+GGG - chr1_1:22868229-22868248 Msa0014410:CDS 30.0%
TTCTGAACCAAAAATTGATG+AGG - chr1_1:22868281-22868300 Msa0014410:CDS 30.0%
! TGAATTGCCTCATCAATTTT+TGG + chr1_1:22868291-22868310 None:intergenic 30.0%
ATATGTTGCCAGATACATAA+TGG + chr1_1:22868371-22868390 None:intergenic 30.0%
GATTATTCAATGCATACACA+AGG + chr1_1:22868506-22868525 None:intergenic 30.0%
CCGCAATTGAAGAAAATTAA+TGG + chr1_1:22868530-22868549 None:intergenic 30.0%
CTCTAACATATTTGTAGATG+TGG - chr1_1:22868714-22868733 Msa0014410:CDS 30.0%
!! GAATTTCTGGATTCACTTTT+TGG - chr1_1:22868799-22868818 Msa0014410:CDS 30.0%
TGAAGGCAAGAGATTAAAAT+TGG - chr1_1:22868868-22868887 Msa0014410:intron 30.0%
TCAAGTTAGAATCAACTCTA+CGG + chr1_1:22868899-22868918 None:intergenic 30.0%
AAAACACATTCGAACTTTGA+AGG + chr1_1:22868945-22868964 None:intergenic 30.0%
TATTGTTCAACTCACTTTCA+CGG - chr1_1:22868978-22868997 Msa0014410:intron 30.0%
TAACTCAAACACTTTCACAT+TGG - chr1_1:22869049-22869068 Msa0014410:intron 30.0%
CTTATTTCCATAAGCTCTTT+AGG + chr1_1:22869237-22869256 None:intergenic 30.0%
AAACATTTGTGAGACTGTAT+GGG + chr1_1:22869309-22869328 None:intergenic 30.0%
TAAACATTTGTGAGACTGTA+TGG + chr1_1:22869310-22869329 None:intergenic 30.0%
!! AATTCGTGCTTTGAAGATTA+CGG + chr1_1:22869372-22869391 None:intergenic 30.0%
! ACAAAAGAAGATCTCTTTTC+AGG - chr1_1:22869415-22869434 Msa0014410:intron 30.0%
CAATAAGATCAATTTCCAAC+TGG - chr1_1:22869480-22869499 Msa0014410:intron 30.0%
CAATTTCCAACTGGTTATAT+TGG - chr1_1:22869489-22869508 Msa0014410:intron 30.0%
TCTCTTAGCTTACTAAGATT+TGG + chr1_1:22869578-22869597 None:intergenic 30.0%
! AGAAGCCTACATTTTCTAAA+GGG - chr1_1:22869741-22869760 Msa0014410:CDS 30.0%
! TTCTTCCCTTTAGAAAATGT+AGG + chr1_1:22869749-22869768 None:intergenic 30.0%
GAAAATAGTCCAATTAGATG+GGG - chr1_1:22869806-22869825 Msa0014410:CDS 30.0%
TCGATTTCTATTTCCAATGT+TGG + chr1_1:22870023-22870042 None:intergenic 30.0%
TTGAGTTTGAGAATAAGGTG+TGG + chr1_1:22866857-22866876 None:intergenic 35.0%
!! AAGTTTTTCAGCATCCATGT+TGG - chr1_1:22867005-22867024 Msa0014410:CDS 35.0%
TGATCAGTCACAGATTAAGA+CGG - chr1_1:22867068-22867087 Msa0014410:CDS 35.0%
CTATTACTCATGTCATGGTT+TGG - chr1_1:22867229-22867248 Msa0014410:CDS 35.0%
AGATCTCACCATAATGATTG+TGG + chr1_1:22867836-22867855 None:intergenic 35.0%
TATGGTGAGATCTGATTAGA+TGG - chr1_1:22867843-22867862 Msa0014410:intron 35.0%
AATCTCTTAACCGAATGTCT+TGG + chr1_1:22867932-22867951 None:intergenic 35.0%
GCAAAGATCACAGAATTCAA+AGG - chr1_1:22868084-22868103 Msa0014410:intron 35.0%
GAAGACCATTGTATTCAGTA+TGG - chr1_1:22868115-22868134 Msa0014410:intron 35.0%
GTCGATGAAGTAAAATGTGT+TGG - chr1_1:22868171-22868190 Msa0014410:CDS 35.0%
! CAGCTAACAAAGCACATTTT+AGG + chr1_1:22868200-22868219 None:intergenic 35.0%
ACATATTTGTAGATGTGGAG+AGG - chr1_1:22868719-22868738 Msa0014410:CDS 35.0%
AAAAGCTACCAAGTATTCTC+AGG - chr1_1:22868771-22868790 Msa0014410:CDS 35.0%
CAAGTTAGAATCAACTCTAC+GGG + chr1_1:22868898-22868917 None:intergenic 35.0%
AAAGCCTAAGCATAAAAGAG+TGG + chr1_1:22869076-22869095 None:intergenic 35.0%
!! ATTCGTGCTTTGAAGATTAC+GGG + chr1_1:22869371-22869390 None:intergenic 35.0%
ACATTCTTGATTCTCTTTGG+AGG + chr1_1:22869448-22869467 None:intergenic 35.0%
CTGACATTCTTGATTCTCTT+TGG + chr1_1:22869451-22869470 None:intergenic 35.0%
AGCTTACTAAGATTTGGATC+AGG + chr1_1:22869572-22869591 None:intergenic 35.0%
ATTTGAAGGGGTTGTATGTT+TGG + chr1_1:22869639-22869658 None:intergenic 35.0%
AGGATGAATGGAATTTGAAG+GGG + chr1_1:22869651-22869670 None:intergenic 35.0%
CAGGATGAATGGAATTTGAA+GGG + chr1_1:22869652-22869671 None:intergenic 35.0%
TCAGGATGAATGGAATTTGA+AGG + chr1_1:22869653-22869672 None:intergenic 35.0%
TTCAAATTCCATTCATCCTG+AGG - chr1_1:22869652-22869671 Msa0014410:intron 35.0%
GTAGTAGTACTAGTTGAAGA+AGG + chr1_1:22869707-22869726 None:intergenic 35.0%
GAAAATGTAGGCTTCTCAAT+TGG + chr1_1:22869737-22869756 None:intergenic 35.0%
! GAGAAGCCTACATTTTCTAA+AGG - chr1_1:22869740-22869759 Msa0014410:CDS 35.0%
GGTTACTTCATTGTTTGGTA+TGG - chr1_1:22869838-22869857 Msa0014410:CDS 35.0%
!! AGTTGAGTTGAAAGAGCATT+GGG - chr1_1:22869895-22869914 Msa0014410:CDS 35.0%
CTCTTGGTTGCAATATATGT+TGG - chr1_1:22869949-22869968 Msa0014410:CDS 35.0%
TACATGGTATGTGATTGGAA+GGG - chr1_1:22869979-22869998 Msa0014410:CDS 35.0%
!!! GAAGGTTTTGGAGTGAAGAA+AGG + chr1_1:22866916-22866935 None:intergenic 40.0%
ATAGCCATATCATGACCAGA+AGG + chr1_1:22867138-22867157 None:intergenic 40.0%
AGCAAATGGATCGGAAAGAA+TGG + chr1_1:22867181-22867200 None:intergenic 40.0%
TCATAGGCAAAACGAGCAAA+TGG + chr1_1:22867195-22867214 None:intergenic 40.0%
! TGCTCGTTTTGCCTATGATA+AGG - chr1_1:22867197-22867216 Msa0014410:CDS 40.0%
ATCGTAGATCGTATGATCTC+AGG + chr1_1:22867451-22867470 None:intergenic 40.0%
AGATCATACGATCTACGATG+TGG - chr1_1:22867452-22867471 Msa0014410:CDS 40.0%
CTGATTAGATGGCTATGTAG+AGG - chr1_1:22867854-22867873 Msa0014410:intron 40.0%
CGACTCAAATCCAAGACATT+CGG - chr1_1:22867919-22867938 Msa0014410:intron 40.0%
AGTATGACAAAATGTGGTGC+AGG - chr1_1:22868056-22868075 Msa0014410:intron 40.0%
ACAGAATTCAAAGGCTTCAC+TGG - chr1_1:22868093-22868112 Msa0014410:intron 40.0%
CCACACCATACTGAATACAA+TGG + chr1_1:22868123-22868142 None:intergenic 40.0%
CCATTGTATTCAGTATGGTG+TGG - chr1_1:22868120-22868139 Msa0014410:intron 40.0%
ACTTACGAAATGCAGTTGAC+AGG + chr1_1:22868321-22868340 None:intergenic 40.0%
TGTCTTTATGACAGCGATTG+AGG + chr1_1:22868463-22868482 None:intergenic 40.0%
!! TCAAGAACTCTAAAGCAGCA+AGG + chr1_1:22868633-22868652 None:intergenic 40.0%
TTCACTCACCTGAGAATACT+TGG + chr1_1:22868782-22868801 None:intergenic 40.0%
TTCTCAGGTGAGTGAATTTC+TGG - chr1_1:22868786-22868805 Msa0014410:CDS 40.0%
! TGGACCACTCTTTTATGCTT+AGG - chr1_1:22869069-22869088 Msa0014410:intron 40.0%
TGGTTGCCAATATAACCAGT+TGG + chr1_1:22869498-22869517 None:intergenic 40.0%
! CGCAACTTTTGTCATGCTTT+TGG + chr1_1:22869537-22869556 None:intergenic 40.0%
CCAATATTCCTCAGGATGAA+TGG + chr1_1:22869663-22869682 None:intergenic 40.0%
CCATTCATCCTGAGGAATAT+TGG - chr1_1:22869660-22869679 Msa0014410:intron 40.0%
GAAGGAAGAACAACAGTTGA+TGG + chr1_1:22869689-22869708 None:intergenic 40.0%
CCAAACAATGAAGTAACCAC+CGG + chr1_1:22869836-22869855 None:intergenic 40.0%
GCAGTTAGGTTACATGAAGT+TGG - chr1_1:22869863-22869882 Msa0014410:CDS 40.0%
!! CAGTTGAGTTGAAAGAGCAT+TGG - chr1_1:22869894-22869913 Msa0014410:CDS 40.0%
!! GTTGAGTTGAAAGAGCATTG+GGG - chr1_1:22869896-22869915 Msa0014410:CDS 40.0%
TGGAAATCGTTAACAGCTCT+TGG - chr1_1:22869933-22869952 Msa0014410:CDS 40.0%
!! ATATGTTGGTAGCAGCTACA+TGG - chr1_1:22869963-22869982 Msa0014410:CDS 40.0%
CTACATGGTATGTGATTGGA+AGG - chr1_1:22869978-22869997 Msa0014410:CDS 40.0%
AAGGGTTGCTGTAGAATTTG+TGG - chr1_1:22869997-22870016 Msa0014410:CDS 40.0%
GTAGAATTTGTGGCCAACAT+TGG - chr1_1:22870007-22870026 Msa0014410:CDS 40.0%
CGATGTCATCCTGATATTGC+TGG - chr1_1:22867111-22867130 Msa0014410:CDS 45.0%
TGGTCCTTCTGGTCATGATA+TGG - chr1_1:22867131-22867150 Msa0014410:CDS 45.0%
GGCAAAACGAGCAAATGGAT+CGG + chr1_1:22867190-22867209 None:intergenic 45.0%
!! CATGTCATGGTTTGGTGTGA+TGG - chr1_1:22867237-22867256 Msa0014410:CDS 45.0%
ACCGTCTGCAACTTCAATTG+CGG - chr1_1:22867290-22867309 Msa0014410:CDS 45.0%
ATATGCGCAGCAATCTTGAC+AGG + chr1_1:22867349-22867368 None:intergenic 45.0%
ATTCTGGACGCACGATAGAT+CGG + chr1_1:22867412-22867431 None:intergenic 45.0%
ATCTATCGTGCGTCCAGAAT+TGG - chr1_1:22867412-22867431 Msa0014410:CDS 45.0%
GACTGTTTGAACCACAACTG+CGG + chr1_1:22867486-22867505 None:intergenic 45.0%
ATTCACAGTGCAACTGCAAC+CGG - chr1_1:22867531-22867550 Msa0014410:intron 45.0%
GCTATGTAGAGGAGTCTAGT+CGG - chr1_1:22867865-22867884 Msa0014410:intron 45.0%
! TCGGATGGATCGATTTAAGC+AGG - chr1_1:22867884-22867903 Msa0014410:intron 45.0%
AATCAGTTTACGGGAGAGCA+AGG - chr1_1:22868238-22868257 Msa0014410:CDS 45.0%
ATCAGTTTACGGGAGAGCAA+GGG - chr1_1:22868239-22868258 Msa0014410:CDS 45.0%
!! AGCAAGGGTTGTTTCTCAGT+GGG - chr1_1:22868254-22868273 Msa0014410:CDS 45.0%
!! GAACTCTAAAGCAGCAAGGT+TGG + chr1_1:22868629-22868648 None:intergenic 45.0%
!! TTGAAGATTACGGGCTGGTT+TGG + chr1_1:22869362-22869381 None:intergenic 45.0%
TGGCAACCAAATAGTGCAAC+TGG - chr1_1:22869509-22869528 Msa0014410:intron 45.0%
!! TTGGTGCCAGTTGCACTATT+TGG + chr1_1:22869518-22869537 None:intergenic 45.0%
GATGGAGTCCAATATTCCTC+AGG + chr1_1:22869671-22869690 None:intergenic 45.0%
TCCAATTAGATGGGGATTGC+CGG - chr1_1:22869814-22869833 Msa0014410:CDS 45.0%
CCGGTGGTTACTTCATTGTT+TGG - chr1_1:22869833-22869852 Msa0014410:CDS 45.0%
TGTTTGGTATGGCTGCAGTT+AGG - chr1_1:22869849-22869868 Msa0014410:CDS 45.0%
GCAGCTACATGGTATGTGAT+TGG - chr1_1:22869974-22869993 Msa0014410:CDS 45.0%
GAATAAGGTGTGGCAGCAAG+AGG + chr1_1:22866847-22866866 None:intergenic 50.0%
CCAGAAGGACCAGCAATATC+AGG + chr1_1:22867123-22867142 None:intergenic 50.0%
CCTGATATTGCTGGTCCTTC+TGG - chr1_1:22867120-22867139 Msa0014410:CDS 50.0%
GCCGCAATTGAAGTTGCAGA+CGG + chr1_1:22867294-22867313 None:intergenic 50.0%
TGGTATAGCAACCGCAGTTG+TGG - chr1_1:22867472-22867491 Msa0014410:CDS 50.0%
TTCACAGTGCAACTGCAACC+GGG - chr1_1:22867532-22867551 Msa0014410:intron 50.0%
TGTAGAGGAGTCTAGTCGGA+TGG - chr1_1:22867869-22867888 Msa0014410:intron 50.0%
TGGCTCACAAAGTGAGCAGA+GGG - chr1_1:22868140-22868159 Msa0014410:intron 50.0%
!! GAGCAAGGGTTGTTTCTCAG+TGG - chr1_1:22868253-22868272 Msa0014410:CDS 50.0%
CCTACTCTTACATTGCCACG+TGG + chr1_1:22868667-22868686 None:intergenic 50.0%
CCACGTGGCAATGTAAGAGT+AGG - chr1_1:22868664-22868683 Msa0014410:CDS 50.0%
GTAGGTGCAAGTCATACAGC+AGG - chr1_1:22868682-22868701 Msa0014410:CDS 50.0%
!! GTGCTTTGAAGATTACGGGC+TGG + chr1_1:22869367-22869386 None:intergenic 50.0%
ACCGGCAATCCCCATCTAAT+TGG + chr1_1:22869818-22869837 None:intergenic 50.0%
AATTAGATGGGGATTGCCGG+TGG - chr1_1:22869817-22869836 Msa0014410:CDS 50.0%
!! GAGTTGAAAGAGCATTGGGG+AGG - chr1_1:22869899-22869918 Msa0014410:CDS 50.0%
! TTGGGGAGGTTCTCTAGCTT+TGG - chr1_1:22869913-22869932 Msa0014410:CDS 50.0%
GACGCACGATAGATCGGAAG+GGG + chr1_1:22867406-22867425 None:intergenic 55.0%
GGACGCACGATAGATCGGAA+GGG + chr1_1:22867407-22867426 None:intergenic 55.0%
TGGACGCACGATAGATCGGA+AGG + chr1_1:22867408-22867427 None:intergenic 55.0%
GTGGCTCACAAAGTGAGCAG+AGG - chr1_1:22868139-22868158 Msa0014410:intron 55.0%
TTGATGTCGAAGCAGCCACG+TGG - chr1_1:22868649-22868668 Msa0014410:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 22866825 22870129 22866825 ID=Msa0014410;Name=Msa0014410
chr1_1 mRNA 22866825 22870129 22866825 ID=Msa0014410-mRNA-1;Parent=Msa0014410;Name=Msa0014410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=7|1|1|1|1|1|4|84|477
chr1_1 exon 22866825 22867517 22866825 ID=Msa0014410-mRNA-1:exon:8000;Parent=Msa0014410-mRNA-1
chr1_1 exon 22868162 22868342 22868162 ID=Msa0014410-mRNA-1:exon:7999;Parent=Msa0014410-mRNA-1
chr1_1 exon 22868620 22868876 22868620 ID=Msa0014410-mRNA-1:exon:7998;Parent=Msa0014410-mRNA-1
chr1_1 exon 22869736 22870129 22869736 ID=Msa0014410-mRNA-1:exon:7997;Parent=Msa0014410-mRNA-1
chr1_1 five_prime_UTR 22870123 22870129 22870123 ID=Msa0014410-mRNA-1:five_prime_utr;Parent=Msa0014410-mRNA-1
chr1_1 CDS 22869736 22870122 22869736 ID=Msa0014410-mRNA-1:cds;Parent=Msa0014410-mRNA-1
chr1_1 CDS 22868620 22868876 22868620 ID=Msa0014410-mRNA-1:cds;Parent=Msa0014410-mRNA-1
chr1_1 CDS 22868162 22868342 22868162 ID=Msa0014410-mRNA-1:cds;Parent=Msa0014410-mRNA-1
chr1_1 CDS 22866909 22867517 22866909 ID=Msa0014410-mRNA-1:cds;Parent=Msa0014410-mRNA-1
chr1_1 three_prime_UTR 22866825 22866908 22866825 ID=Msa0014410-mRNA-1:three_prime_utr;Parent=Msa0014410-mRNA-1
Gene Sequence

>Msa0014410

ATGATGTCTTATCCTCTTGCTGCCACACCTTATTCTCAAACTCAAACCATAAACATGTCTACTGTTACATCTACATCTCTTCCTTTCTTCACTCCAAAACCTTCAAATTTCCAAAACAAGTCTTGTTTTTCTAAATCAAATTTCTCTACTCTTACATGTAAAGCATCATCATCAAGTTTTTCAGCATCCATGTTGGATTTTGACTTGTATGATCTTCTAGGAATTGATAGTTCATGTGATCAGTCACAGATTAAGACGGCGTATCGATCTCTTCAGAAACGATGTCATCCTGATATTGCTGGTCCTTCTGGTCATGATATGGCTATCATTCTTAATGATGCTTATGCCATTCTTTCCGATCCATTTGCTCGTTTTGCCTATGATAAGGAGCATGCAAAGATCACAGAATTCAAAGGCTTCACTGGAAGACCATTGTATTCAGTATGGTGTGGCTCACAAAGTGAGCAGAGGGCTATATTTGTCGATGAAGTAAAATGTGTTGGATGCCTAAAATGTGCTTTGTTAGCTGAAAAGACTTTTGCTATAGAATCAGTTTACGGGAGAGCAAGGGTTGTTTCTCAGTGGGCTGATTCTGAACCAAAAATTGATGAGGCAATTCAAGCTTGTCCTGTCAACTGCATTTCAGTTGTTGAGAGATCCAACCTTGCTGCTTTAGAGTTCTTGATGTCGAAGCAGCCACGTGGCAATGTAAGAGTAGGTGCAAGTCATACAGCAGGTGCTCGTGTCTCTAACATATTTGTAGATGTGGAGAGGTTTCAGACTAGATTTCAAGAGACAATGCAAAAAGCTACCAAGTATTCTCAGGAAACAGACCTCCAAAGAGAATCAAGAATGTCAGCAATTCAAGCAATAAGATCAATTTCCAACTGGTTATATTGGCAACCAAATAGTGCAACTGGCACCAAAAGCATGACAAAAGTTGCGCAAAAATTACTACCTGATCCAAATCTTAGTAAGCTAAGAGATGCAGCTGCAAAGAGAAAATTAAGAGATACACAAAAAACCAAACATACAACCCCTTCAAATTCCATTCATCCTGAGGAATATTGGACTCCATCAACTGTTGTTCTTCCTTCTTCAACTAGTACTACTACTACTACACCAATTGAGAAGCCTACATTTTCTAAAGGGAAGAAACAAAGAAAAAGAAGTGATATTGAAACATATGAGAATGAAAATAGTCCAATTAGATGGGGATTGCCGGTGGTTACTTCATTGTTTGGTATGGCTGCAGTTAGGTTACATGAAGTTGGATCATCAACAGTTGAGTTGAAAGAGCATTGGGGAGGTTCTCTAGCTTTGGAAATCGTTAACAGCTCTTGGTTGCAATATATGTTGGTAGCAGCTACATGGTATGTGATTGGAAGGGTTGCTGTAGAATTTGTGGCCAACATTGGAAATAGAAATCGATAG

Protein sequence

>Msa0014410

MMSYPLAATPYSQTQTINMSTVTSTSLPFFTPKPSNFQNKSCFSKSNFSTLTCKASSSSFSASMLDFDLYDLLGIDSSCDQSQIKTAYRSLQKRCHPDIAGPSGHDMAIILNDAYAILSDPFARFAYDKEHAKITEFKGFTGRPLYSVWCGSQSEQRAIFVDEVKCVGCLKCALLAEKTFAIESVYGRARVVSQWADSEPKIDEAIQACPVNCISVVERSNLAALEFLMSKQPRGNVRVGASHTAGARVSNIFVDVERFQTRFQETMQKATKYSQETDLQRESRMSAIQAIRSISNWLYWQPNSATGTKSMTKVAQKLLPDPNLSKLRDAAAKRKLRDTQKTKHTTPSNSIHPEEYWTPSTVVLPSSTSTTTTTPIEKPTFSKGKKQRKRSDIETYENENSPIRWGLPVVTSLFGMAAVRLHEVGSSTVELKEHWGGSLALEIVNSSWLQYMLVAATWYVIGRVAVEFVANIGNRNR*