Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379060 | XP_003602797.1 | 98.674 | 528 | 7 | 0 | 1 | 528 | 1 | 528 | 0.0 | 1067 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379060 | sp|P0DH79|Y5064_ARATH | 67.677 | 495 | 150 | 5 | 36 | 527 | 58 | 545 | 0.0 | 666 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379060 | G7J3V3 | 98.674 | 528 | 7 | 0 | 1 | 528 | 1 | 528 | 0.0 | 1067 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0379060 | Msa0475050 | 0.809483 | 1.850123e-50 | -8.615850e-47 |
| Msa0379060 | Msa0508540 | 0.818764 | 1.653448e-52 | -8.615850e-47 |
| Msa0379060 | Msa0542360 | 0.816643 | 4.974447e-52 | -8.615850e-47 |
| Msa0379060 | Msa0598560 | 0.827347 | 1.645118e-54 | -8.615850e-47 |
| Msa0379060 | Msa0866800 | 0.803405 | 3.540737e-49 | -8.615850e-47 |
| Msa0379060 | Msa1310660 | 0.803050 | 4.195103e-49 | -8.615850e-47 |
| Msa0379060 | Msa1368180 | 0.831203 | 1.907086e-55 | -8.615850e-47 |
| Msa0379060 | Msa1385580 | 0.816548 | 5.225735e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379060 | MtrunA17_Chr3g0132111 | 98.674 | 528 | 7 | 0 | 1 | 528 | 1 | 528 | 0.0 | 1067 |
| Msa0379060 | MtrunA17_Chr8g0386311 | 72.180 | 532 | 138 | 4 | 3 | 526 | 2 | 531 | 0.0 | 751 |
| Msa0379060 | MtrunA17_Chr8g0384891 | 55.711 | 499 | 202 | 9 | 37 | 527 | 45 | 532 | 0.0 | 537 |
| Msa0379060 | MtrunA17_Chr3g0130841 | 52.182 | 527 | 236 | 9 | 5 | 527 | 2 | 516 | 0.0 | 532 |
| Msa0379060 | MtrunA17_Chr8g0355581 | 70.968 | 62 | 18 | 0 | 37 | 98 | 48 | 109 | 7.48e-22 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379060 | AT5G50640.1 | 67.677 | 495 | 150 | 5 | 36 | 527 | 58 | 545 | 0.0 | 666 |
| Msa0379060 | AT5G50530.1 | 67.677 | 495 | 150 | 5 | 36 | 527 | 58 | 545 | 0.0 | 666 |
| Msa0379060 | AT5G63490.1 | 66.082 | 513 | 157 | 8 | 24 | 527 | 36 | 540 | 0.0 | 644 |
| Msa0379060 | AT5G63490.2 | 66.082 | 513 | 157 | 8 | 24 | 527 | 36 | 540 | 0.0 | 644 |
| Msa0379060 | AT3G52950.1 | 59.161 | 453 | 173 | 6 | 37 | 483 | 60 | 506 | 0.0 | 536 |
| Msa0379060 | AT3G52950.2 | 59.161 | 453 | 173 | 6 | 37 | 483 | 60 | 506 | 0.0 | 536 |
| Msa0379060 | AT2G36500.1 | 54.382 | 502 | 207 | 8 | 29 | 527 | 51 | 533 | 0.0 | 522 |
Find 189 sgRNAs with CRISPR-Local
Find 618 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCCAATCATAATCAATTT+TGG | 0.077230 | 3_1:-79962677 | None:intergenic |
| TCATTGTACTTTATGAAAAT+TGG | 0.098695 | 3_1:+79962509 | Msa0379060:three_prime_UTR |
| ATTCAATTTGATCGGAAAAT+TGG | 0.159173 | 3_1:-79954524 | None:intergenic |
| CTTCAAAGTACAAGATAAAA+AGG | 0.176006 | 3_1:+79959540 | Msa0379060:CDS |
| GCCGGAGCTGCCCTTGTTGC+TGG | 0.186837 | 3_1:+79962283 | Msa0379060:CDS |
| CCACCTTGATGCAAAGGTTT+TGG | 0.193956 | 3_1:+79959305 | Msa0379060:CDS |
| GATGAGAATTTCAACGCTTT+TGG | 0.196867 | 3_1:-79954374 | None:intergenic |
| ACCAACCTTGCACCATCTTT+TGG | 0.249187 | 3_1:-79955977 | None:intergenic |
| TCATATACAGTTGTTGTTTC+GGG | 0.250598 | 3_1:-79955636 | None:intergenic |
| ATTATTACACATTCTGGATT+TGG | 0.263880 | 3_1:-79958062 | None:intergenic |
| AGTGAGAGCTCCTTCAAAAT+AGG | 0.276671 | 3_1:+79959451 | Msa0379060:intron |
| AGAATTTGAGGCAGATTGTT+AGG | 0.283716 | 3_1:-79961691 | None:intergenic |
| TTCATATACAGTTGTTGTTT+CGG | 0.284586 | 3_1:-79955637 | None:intergenic |
| GTATCAATTATTACACATTC+TGG | 0.285057 | 3_1:-79958068 | None:intergenic |
| AACCCAAAATTGATTATGAT+TGG | 0.295319 | 3_1:+79962674 | Msa0379060:three_prime_UTR |
| CACCTGACATATTCATATTC+TGG | 0.300161 | 3_1:+79962418 | Msa0379060:three_prime_UTR |
| CACTGGGGATCTTCTAATTC+TGG | 0.304511 | 3_1:+79956230 | Msa0379060:CDS |
| CTCGCTTCAAGTATGTTAAA+AGG | 0.309592 | 3_1:-79962312 | None:intergenic |
| CTGACGTGCACGGCTTCTAT+TGG | 0.318842 | 3_1:+79954344 | Msa0379060:five_prime_UTR |
| GCAGACTCAGAGGCTCTTCT+AGG | 0.321696 | 3_1:-79954622 | None:intergenic |
| TAACAATCTGCCTCAAATTC+TGG | 0.323404 | 3_1:+79961693 | Msa0379060:CDS |
| AGCTTTCCGTTGATATATAA+AGG | 0.331111 | 3_1:+79962355 | Msa0379060:three_prime_UTR |
| TTGGAAACAGGTGTGTCTTC+AGG | 0.332085 | 3_1:-79955897 | None:intergenic |
| GCTGCCCTTGTTGCTGGCTT+AGG | 0.335023 | 3_1:+79962289 | Msa0379060:CDS |
| CATTGTACTTTATGAAAATT+GGG | 0.344842 | 3_1:+79962510 | Msa0379060:three_prime_UTR |
| GGTTCTGATGGAGGAGAAAC+AGG | 0.351814 | 3_1:+79959472 | Msa0379060:CDS |
| TACTTTGAAGGAAAATGTAT+TGG | 0.355418 | 3_1:-79959527 | None:intergenic |
| ACTAGTATCAATTTGTCAAA+TGG | 0.355663 | 3_1:-79954282 | None:intergenic |
| CACAGGAAAGGTTCACGTTC+GGG | 0.363196 | 3_1:+79962205 | Msa0379060:CDS |
| GAATTGGACAGGGGTTTAAC+AGG | 0.363372 | 3_1:+79955567 | Msa0379060:intron |
| CATCATTTGTTGAGGCCCTT+CGG | 0.368161 | 3_1:+79956390 | Msa0379060:CDS |
| GTTTCATCGTCATCATCATT+TGG | 0.371602 | 3_1:-79959349 | None:intergenic |
| GGTGGAGAATGGAGAAGTTT+TGG | 0.376913 | 3_1:+79956103 | Msa0379060:CDS |
| ACTTTGAAGGAAAATGTATT+GGG | 0.391529 | 3_1:-79959526 | None:intergenic |
| GCCAGCAACAAGGGCAGCTC+CGG | 0.393231 | 3_1:-79962284 | None:intergenic |
| GTACGTCGACAGGAAAATTT+AGG | 0.394925 | 3_1:+79956069 | Msa0379060:intron |
| CTTGTCATAACCTTGGAAAC+AGG | 0.399483 | 3_1:-79955909 | None:intergenic |
| TTGATCGGAAAATTGGATTC+CGG | 0.405031 | 3_1:-79954517 | None:intergenic |
| ATCATTTGTTGAGGCCCTTC+GGG | 0.407577 | 3_1:+79956391 | Msa0379060:CDS |
| AGACCATGATAAAGTTGTAT+TGG | 0.413757 | 3_1:+79961820 | Msa0379060:CDS |
| AGTTCCAGTATGCTTTAGAT+TGG | 0.414019 | 3_1:-79962378 | None:intergenic |
| GCAATTGCAGCAGCTGTTGA+AGG | 0.420737 | 3_1:+79956197 | Msa0379060:CDS |
| AAACGGAGAGAGAAGGAAGA+AGG | 0.421013 | 3_1:-79954463 | None:intergenic |
| CATCTTCCGGTGGTTGATAG+AGG | 0.421884 | 3_1:+79958137 | Msa0379060:CDS |
| GATTCTAACGGGTTGCTTTG+TGG | 0.422235 | 3_1:+79955708 | Msa0379060:CDS |
| TGTGCCGTTGTTACTGTTGA+TGG | 0.422789 | 3_1:+79956647 | Msa0379060:CDS |
| TGCAAGGACTGTTGGTTTGA+AGG | 0.427993 | 3_1:+79961877 | Msa0379060:CDS |
| CTTCGCCGGTCGTCGGTGAC+CGG | 0.431417 | 3_1:+79954498 | Msa0379060:five_prime_UTR |
| TTTGAAAACAACAAAGAAGA+TGG | 0.433460 | 3_1:+79956607 | Msa0379060:CDS |
| TGCTGTGGCTACTGTTAGTC+AGG | 0.436331 | 3_1:+79958290 | Msa0379060:CDS |
| AAATAAAGTACCTTCTCAAC+AGG | 0.439105 | 3_1:-79956887 | None:intergenic |
| GTCTTCAGGATTTATCTCTT+CGG | 0.440857 | 3_1:-79955883 | None:intergenic |
| GAAATTGTATTTAGACTATG+AGG | 0.441637 | 3_1:+79962171 | Msa0379060:CDS |
| TTATAACCTCCGTCATGCTC+CGG | 0.443245 | 3_1:-79961633 | None:intergenic |
| TCTGAGTCTGCCGTCGGAAG+AGG | 0.444441 | 3_1:+79954634 | Msa0379060:CDS |
| GGCATGCTTGCAGAAATATA+AGG | 0.449708 | 3_1:-79959505 | None:intergenic |
| ACCACGCTACCTTTCTGTCT+AGG | 0.450099 | 3_1:+79954432 | Msa0379060:five_prime_UTR |
| AAGCATACTGGAACTTTGTA+TGG | 0.453077 | 3_1:+79962386 | Msa0379060:three_prime_UTR |
| AACGGAGAGAGAAGGAAGAA+GGG | 0.453242 | 3_1:-79954462 | None:intergenic |
| CATCTACCTGTGGTGGAGAA+TGG | 0.454004 | 3_1:+79956092 | Msa0379060:CDS |
| CAAGGTTATGACAAGAAATC+CGG | 0.454010 | 3_1:+79955917 | Msa0379060:CDS |
| ACAAGAATAAACGACATTAA+CGG | 0.457038 | 3_1:+79962614 | Msa0379060:three_prime_UTR |
| AAGGCCAATCTAAAGCATAC+TGG | 0.459289 | 3_1:+79962374 | Msa0379060:three_prime_UTR |
| CGGATTTCTTGTCATAACCT+TGG | 0.463058 | 3_1:-79955916 | None:intergenic |
| TTCCAGAATATGAATATGTC+AGG | 0.464804 | 3_1:-79962420 | None:intergenic |
| GTAATAGAGCATCCACCCTC+CGG | 0.465246 | 3_1:-79955680 | None:intergenic |
| TATCAGTACCAAGTCTTTGA+AGG | 0.465963 | 3_1:-79961663 | None:intergenic |
| TATTACTAACCGATTCTAAC+GGG | 0.469332 | 3_1:+79955697 | Msa0379060:CDS |
| CTAGTATCAATTTGTCAAAT+GGG | 0.474041 | 3_1:-79954281 | None:intergenic |
| CCACGCTACCTTTCTGTCTA+GGG | 0.474686 | 3_1:+79954433 | Msa0379060:five_prime_UTR |
| GTATGAAGTGCATCGACAAT+TGG | 0.484525 | 3_1:-79958092 | None:intergenic |
| GAATTTGAGGCAGATTGTTA+GGG | 0.485640 | 3_1:-79961690 | None:intergenic |
| GCATATAGTGGTGTTGCTGC+CGG | 0.487780 | 3_1:+79962265 | Msa0379060:CDS |
| TTGGAAAGTACCAGAATTTG+AGG | 0.488750 | 3_1:-79961703 | None:intergenic |
| TCACAGGAAAGGTTCACGTT+CGG | 0.490167 | 3_1:+79962204 | Msa0379060:CDS |
| CGAAGGGGAAAGAGGATAAA+CGG | 0.491442 | 3_1:-79954480 | None:intergenic |
| CTTGTCGTCGGATGGCTGCC+CGG | 0.491991 | 3_1:+79955661 | Msa0379060:CDS |
| CTTTCCCCTTCGCCGGTCGT+CGG | 0.492907 | 3_1:+79954491 | Msa0379060:five_prime_UTR |
| ACAAAGCAACCCGTTAGAAT+CGG | 0.498034 | 3_1:-79955706 | None:intergenic |
| GCACGATGCTACTGCACGTA+TGG | 0.501271 | 3_1:+79956151 | Msa0379060:CDS |
| TGCTACTGCACGTATGGAAA+GGG | 0.503207 | 3_1:+79956157 | Msa0379060:CDS |
| CTTCCACCACCTTGATGCAA+AGG | 0.505424 | 3_1:+79959299 | Msa0379060:CDS |
| ACGACCGGCGAAGGGGAAAG+AGG | 0.506913 | 3_1:-79954488 | None:intergenic |
| AGAGGATAAACGGAGAGAGA+AGG | 0.513317 | 3_1:-79954470 | None:intergenic |
| GCATACAAATTTCAGTTCAA+GGG | 0.513400 | 3_1:+79956817 | Msa0379060:intron |
| CCTTTCTGAAACTCTTGCTG+TGG | 0.513992 | 3_1:+79955947 | Msa0379060:CDS |
| AGCATGCGTATTCAGATGCA+TGG | 0.518010 | 3_1:+79962236 | Msa0379060:CDS |
| TCGTCGGATGGCTGCCCGGA+GGG | 0.518130 | 3_1:+79955665 | Msa0379060:CDS |
| AAACCTTTGCATCAAGGTGG+TGG | 0.518188 | 3_1:-79959302 | None:intergenic |
| AGTTAATCATACAATTGTAA+AGG | 0.518401 | 3_1:+79954220 | None:intergenic |
| ATGGAAAGGGCCGCAGAGAA+AGG | 0.521302 | 3_1:+79956170 | Msa0379060:CDS |
| ATCCCAAAACCTTTGCATCA+AGG | 0.522360 | 3_1:-79959308 | None:intergenic |
| GAAGTCATTGCGTCTTTCAA+AGG | 0.523215 | 3_1:+79955602 | Msa0379060:CDS |
| TCCTTCAAAATAGGTTCTGA+TGG | 0.525824 | 3_1:+79959460 | Msa0379060:CDS |
| GCATGGGCCTCAGCATATAG+TGG | 0.528916 | 3_1:+79962253 | Msa0379060:CDS |
| GTTTCAGAAAGGACAAATAC+CGG | 0.529303 | 3_1:-79955936 | None:intergenic |
| TCGGATGGCTGCCCGGAGGG+TGG | 0.531721 | 3_1:+79955668 | Msa0379060:CDS |
| TTATCCTCTTTCCCCTTCGC+CGG | 0.533153 | 3_1:+79954484 | Msa0379060:five_prime_UTR |
| TTCTCAACAGGAGTTGATGC+TGG | 0.537127 | 3_1:-79956875 | None:intergenic |
| AGTTCTATCCTTCAAAGACT+TGG | 0.538717 | 3_1:+79961655 | Msa0379060:CDS |
| CCGCAGCTGTGGACCATGCA+AGG | 0.538951 | 3_1:+79961861 | Msa0379060:CDS |
| TATAACCTCCGTCATGCTCC+GGG | 0.539335 | 3_1:-79961632 | None:intergenic |
| CAGTGATCTTGCCGCAGCTG+TGG | 0.540584 | 3_1:+79961850 | Msa0379060:CDS |
| GTCATCATCATTTGGAGGCA+AGG | 0.542220 | 3_1:-79959341 | None:intergenic |
| GGATTCCGGTCACCGACGAC+CGG | 0.543269 | 3_1:-79954503 | None:intergenic |
| AAGCCAATACAACTTTATCA+TGG | 0.544514 | 3_1:-79961823 | None:intergenic |
| GCCTCATCACTTATTTGCCG+AGG | 0.545164 | 3_1:+79962580 | Msa0379060:three_prime_UTR |
| ATGAGGGAACACGTGGTCAC+AGG | 0.545902 | 3_1:+79962188 | Msa0379060:CDS |
| TGAATTCTCATGAATGATTG+TGG | 0.547590 | 3_1:-79956438 | None:intergenic |
| CTCTAATTCATCATTTGTTG+AGG | 0.548165 | 3_1:+79956382 | Msa0379060:CDS |
| CTATTACTAACCGATTCTAA+CGG | 0.548169 | 3_1:+79955696 | Msa0379060:CDS |
| AAAGGAATTGCTGACGTGCA+CGG | 0.552142 | 3_1:+79954334 | Msa0379060:five_prime_UTR |
| GATTGGCCTTTATATATCAA+CGG | 0.552960 | 3_1:-79962361 | None:intergenic |
| AATTGAAGATGGCGAGTCGA+AGG | 0.554524 | 3_1:+79954587 | Msa0379060:exon |
| GAGAGAGAAGGAAGAAGGGA+AGG | 0.554699 | 3_1:-79954458 | None:intergenic |
| GGAAGGAACCCTAGACAGAA+AGG | 0.555026 | 3_1:-79954441 | None:intergenic |
| TAATAGAGCATCCACCCTCC+GGG | 0.555067 | 3_1:-79955679 | None:intergenic |
| TTCAAGGGATATCTTGATGC+GGG | 0.556442 | 3_1:+79956832 | Msa0379060:CDS |
| TGAAGACACACCTGTTTCCA+AGG | 0.557672 | 3_1:+79955899 | Msa0379060:CDS |
| GAGTCTGCCGTCGGAAGAGG+AGG | 0.559431 | 3_1:+79954637 | Msa0379060:CDS |
| ATGCTACTGCACGTATGGAA+AGG | 0.559484 | 3_1:+79956156 | Msa0379060:CDS |
| CGGTCACCGACGACCGGCGA+AGG | 0.561823 | 3_1:-79954497 | None:intergenic |
| CCACAGCAAGAGTTTCAGAA+AGG | 0.562156 | 3_1:-79955947 | None:intergenic |
| TACAAGTATACAAGCAGCAA+GGG | 0.563470 | 3_1:-79962542 | None:intergenic |
| GCACTTCATACTATGCATGA+TGG | 0.565198 | 3_1:+79958104 | Msa0379060:CDS |
| AAGATGGTTGAACTTCATGC+AGG | 0.567866 | 3_1:+79956623 | Msa0379060:CDS |
| TGCATACGAGTTTAGATACC+CGG | 0.570157 | 3_1:+79961614 | Msa0379060:intron |
| ATTTAGGCATCTACCTGTGG+TGG | 0.572148 | 3_1:+79956085 | Msa0379060:CDS |
| TACATACATAGGGCGTGCTA+AGG | 0.575654 | 3_1:-79954677 | None:intergenic |
| AGCATCAACTCCTGTTGAGA+AGG | 0.578946 | 3_1:+79956877 | Msa0379060:CDS |
| GGAAACAGATGGCATGGTAG+TGG | 0.580860 | 3_1:+79958236 | Msa0379060:intron |
| GAGTAGAGTAGAATTGAAGA+TGG | 0.581629 | 3_1:+79954576 | Msa0379060:exon |
| TCATCGTCATCATCATTTGG+AGG | 0.583345 | 3_1:-79959346 | None:intergenic |
| TAATCATACAATTGTAAAGG+AGG | 0.584660 | 3_1:+79954223 | None:intergenic |
| ATATGAAGCTTGTCGTCGGA+TGG | 0.588778 | 3_1:+79955653 | Msa0379060:CDS |
| AATTGAATTTGAAAAGTCGT+AGG | 0.589719 | 3_1:+79954539 | Msa0379060:five_prime_UTR |
| ACTTTACCTCTATCAACCAC+CGG | 0.591116 | 3_1:-79958143 | None:intergenic |
| ACATGTGACTCATGCTGCTG+TGG | 0.591309 | 3_1:+79958275 | Msa0379060:CDS |
| AGATGGCATGGTAGTGGCTG+TGG | 0.591560 | 3_1:+79958242 | Msa0379060:intron |
| ATCATTTGGAGGCAAGGCCA+TGG | 0.592374 | 3_1:-79959335 | None:intergenic |
| ACGTCACTGAATGCTCTACT+CGG | 0.592415 | 3_1:-79962756 | None:intergenic |
| TTTAGATACCCGGAGCATGA+CGG | 0.592463 | 3_1:+79961624 | Msa0379060:intron |
| CCTTGCATGGTCCACAGCTG+CGG | 0.592524 | 3_1:-79961861 | None:intergenic |
| AAGGCCTAAGCCAGCAACAA+GGG | 0.592955 | 3_1:-79962293 | None:intergenic |
| GTGGACCATGCAAGGACTGT+TGG | 0.596875 | 3_1:+79961869 | Msa0379060:CDS |
| GCCCTCCAAAAGATGGTGCA+AGG | 0.596892 | 3_1:+79955972 | Msa0379060:CDS |
| ACTTCTCCATTCTCCACCAC+AGG | 0.597141 | 3_1:-79956098 | None:intergenic |
| GGTCACCGACGACCGGCGAA+GGG | 0.598413 | 3_1:-79954496 | None:intergenic |
| TCTTGTACACAACACAGCCT+CGG | 0.598974 | 3_1:-79962597 | None:intergenic |
| TCAAACCAACAGTCCTTGCA+TGG | 0.602075 | 3_1:-79961874 | None:intergenic |
| TGCTTGCAGAAATATAAGGA+AGG | 0.602186 | 3_1:-79959501 | None:intergenic |
| GAAAGGTAGCGTGGTGTGCG+TGG | 0.603101 | 3_1:-79954424 | None:intergenic |
| GGAACACGTGGTCACAGGAA+AGG | 0.606170 | 3_1:+79962193 | Msa0379060:CDS |
| TCAACAGGAGTTGATGCTGG+TGG | 0.611432 | 3_1:-79956872 | None:intergenic |
| AAATTGTATTTAGACTATGA+GGG | 0.617847 | 3_1:+79962172 | Msa0379060:CDS |
| CTGTATATGAAGCTTGTCGT+CGG | 0.618257 | 3_1:+79955649 | Msa0379060:CDS |
| TTGTGGAATCCTCACAGACA+AGG | 0.623268 | 3_1:+79955725 | Msa0379060:CDS |
| TGTGGAAGCCCTCCAAAAGA+TGG | 0.623712 | 3_1:+79955965 | Msa0379060:CDS |
| GCCTCGGCAAATAAGTGATG+AGG | 0.624724 | 3_1:-79962581 | None:intergenic |
| AAAGGCCTAAGCCAGCAACA+AGG | 0.628281 | 3_1:-79962294 | None:intergenic |
| TTACAAGTATACAAGCAGCA+AGG | 0.628772 | 3_1:-79962543 | None:intergenic |
| GTATCAATTTGTCAAATGGG+TGG | 0.629125 | 3_1:-79954278 | None:intergenic |
| TCTTCCGACGGCAGACTCAG+AGG | 0.629943 | 3_1:-79954632 | None:intergenic |
| GCATGCGTATTCAGATGCAT+GGG | 0.630040 | 3_1:+79962237 | Msa0379060:CDS |
| GCTTGCAGAAATATAAGGAA+GGG | 0.630571 | 3_1:-79959500 | None:intergenic |
| GTCACCGACGACCGGCGAAG+GGG | 0.635516 | 3_1:-79954495 | None:intergenic |
| TTCAAAATAGGTTCTGATGG+AGG | 0.638390 | 3_1:+79959463 | Msa0379060:CDS |
| AGTCACACACCTTGTCTGTG+AGG | 0.641672 | 3_1:-79955734 | None:intergenic |
| TGAATGATTGTGGACAGTGA+TGG | 0.643866 | 3_1:-79956428 | None:intergenic |
| GTGGTTGGAAACAGATGGCA+TGG | 0.644034 | 3_1:+79958230 | Msa0379060:intron |
| CCCTAGACAGAAAGGTAGCG+TGG | 0.644965 | 3_1:-79954433 | None:intergenic |
| CTTGAAGCGAGTTTGATCGA+AGG | 0.652497 | 3_1:+79962324 | Msa0379060:exon |
| ACGAGGTCCTCCTCTTCCGA+CGG | 0.654871 | 3_1:-79954644 | None:intergenic |
| AGAGCCTCTGAGTCTGCCGT+CGG | 0.655585 | 3_1:+79954628 | Msa0379060:CDS |
| GTCGTCGGATGGCTGCCCGG+AGG | 0.658322 | 3_1:+79955664 | Msa0379060:CDS |
| GTTCAAGGGATATCTTGATG+CGG | 0.662105 | 3_1:+79956831 | Msa0379060:intron |
| AGCAACACCACTATATGCTG+AGG | 0.663447 | 3_1:-79962260 | None:intergenic |
| AAAATTTAGGCATCTACCTG+TGG | 0.672597 | 3_1:+79956082 | Msa0379060:CDS |
| ACTGTTGATGGCAAACCTCG+AGG | 0.678986 | 3_1:+79956659 | Msa0379060:CDS |
| CCAAAACCTTTGCATCAAGG+TGG | 0.687299 | 3_1:-79959305 | None:intergenic |
| AGATACCCGGAGCATGACGG+AGG | 0.687574 | 3_1:+79961627 | Msa0379060:intron |
| ACAGGGGTTTAACAGGAGAG+CGG | 0.701289 | 3_1:+79955574 | Msa0379060:intron |
| GTTCTGATGGAGGAGAAACA+GGG | 0.702384 | 3_1:+79959473 | Msa0379060:CDS |
| TTTGCCATCAACAGTAACAA+CGG | 0.702915 | 3_1:-79956651 | None:intergenic |
| TTAGACTATGAGGGAACACG+TGG | 0.704208 | 3_1:+79962181 | Msa0379060:CDS |
| ACTTACGTAACGATGCCTCG+AGG | 0.707769 | 3_1:-79956674 | None:intergenic |
| GCTAAGGAAATTGATTTACG+AGG | 0.717422 | 3_1:-79954661 | None:intergenic |
| AGAATGCATAGATTCACATG+TGG | 0.732493 | 3_1:+79959565 | Msa0379060:CDS |
| ATGATGACGATGAAACACGA+AGG | 0.733270 | 3_1:+79959356 | Msa0379060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTATATAATTTTTTTTT+TGG | + | chr3_1:79960340-79960359 | Msa0379060:intron | 0.0% |
| !!! | ATTTATTTTTTTATTTCTCA+AGG | - | chr3_1:79958872-79958891 | None:intergenic | 10.0% |
| !!! | TTTTTCGTTAATATTTTTAA+TGG | + | chr3_1:79959234-79959253 | Msa0379060:intron | 10.0% |
| !! | CTCAAAATATTAATATTAAA+TGG | - | chr3_1:79960147-79960166 | None:intergenic | 10.0% |
| !!! | AATTAAAAGAAATTTTTTTC+AGG | + | chr3_1:79960548-79960567 | Msa0379060:intron | 10.0% |
| !!! | ATTAAAAGAAATTTTTTTCA+GGG | + | chr3_1:79960549-79960568 | Msa0379060:intron | 10.0% |
| !! | AAAATAAGTATAAATATAAG+GGG | + | chr3_1:79961494-79961513 | Msa0379060:intron | 10.0% |
| !!! | TTCTAATATTTTTTATATGT+TGG | + | chr3_1:79962706-79962725 | Msa0379060:three_prime_UTR | 10.0% |
| !!! | GGTTTTATCAATTTAAATTA+CGG | + | chr3_1:79955522-79955541 | Msa0379060:intron | 15.0% |
| !! | AATTATCATGAAATAAAACT+CGG | - | chr3_1:79956347-79956366 | None:intergenic | 15.0% |
| !!! | AGTTTTATTTCATGATAATT+TGG | + | chr3_1:79956347-79956366 | Msa0379060:intron | 15.0% |
| !!! | GATTTTACAAAATTTAAGAA+TGG | - | chr3_1:79956960-79956979 | None:intergenic | 15.0% |
| !! | AATTATCACTTTGATAAATT+AGG | - | chr3_1:79957801-79957820 | None:intergenic | 15.0% |
| !! | GAAAAAATTAAAGAGATAAA+AGG | + | chr3_1:79957830-79957849 | Msa0379060:intron | 15.0% |
| !! | TAAAGTAAATATATATAGGA+TGG | + | chr3_1:79958160-79958179 | Msa0379060:intron | 15.0% |
| !! | AAAGTAAATATATATAGGAT+GGG | + | chr3_1:79958161-79958180 | Msa0379060:intron | 15.0% |
| !!! | TAGTCAAATATTTTTAATGT+TGG | - | chr3_1:79959083-79959102 | None:intergenic | 15.0% |
| !! | ACAAGTATCAATTAATATTA+TGG | + | chr3_1:79959687-79959706 | Msa0379060:intron | 15.0% |
| !!! | TTAAAAAAATTAGAAGTGTT+TGG | + | chr3_1:79959921-79959940 | Msa0379060:intron | 15.0% |
| !!! | TATAATTTTTTTTTTGGTAG+TGG | + | chr3_1:79960346-79960365 | Msa0379060:intron | 15.0% |
| !!! | TTAAAAGAAATTTTTTTCAG+GGG | + | chr3_1:79960550-79960569 | Msa0379060:intron | 15.0% |
| !! | AATTTATAATGCATCATTAT+GGG | + | chr3_1:79961249-79961268 | Msa0379060:intron | 15.0% |
| !!! | AAACAAATTTTACTTGAAAT+AGG | - | chr3_1:79961561-79961580 | None:intergenic | 15.0% |
| !!! | AACTTTTTTTTTGTTCAAAA+TGG | + | chr3_1:79962088-79962107 | Msa0379060:intron | 15.0% |
| !!! | CTTTTCAAATTCAATTTGAT+CGG | - | chr3_1:79954535-79954554 | None:intergenic | 20.0% |
| !! | ATATAAGCATTTGATTAAAC+AGG | - | chr3_1:79954733-79954752 | None:intergenic | 20.0% |
| !! | GATATTTCATTGAAAAAGTT+AGG | - | chr3_1:79954765-79954784 | None:intergenic | 20.0% |
| !! | TCTTGTATGATTAATTATTG+TGG | + | chr3_1:79954783-79954802 | Msa0379060:intron | 20.0% |
| !! | TAATCATTATTTCGATTGTT+TGG | + | chr3_1:79954857-79954876 | Msa0379060:intron | 20.0% |
| !! | AATCATTATTTCGATTGTTT+GGG | + | chr3_1:79954858-79954877 | Msa0379060:intron | 20.0% |
| !! | AATACTGAATTCTACAATTA+TGG | - | chr3_1:79954912-79954931 | None:intergenic | 20.0% |
| !! | TTTCTAAATTTCAGCTTAAT+TGG | + | chr3_1:79954962-79954981 | Msa0379060:intron | 20.0% |
| !! | ATTTCTTGAAGTAAATATCA+AGG | - | chr3_1:79955194-79955213 | None:intergenic | 20.0% |
| !!! | AAGAAATTATTTTACCAATC+TGG | + | chr3_1:79955207-79955226 | Msa0379060:intron | 20.0% |
| !! | TAACTGTTTAAAAGAAAAAG+AGG | - | chr3_1:79955304-79955323 | None:intergenic | 20.0% |
| !! | ATCAATTTAAATTACGGTAT+AGG | + | chr3_1:79955528-79955547 | Msa0379060:intron | 20.0% |
| !!! | TTGTTTTCTTTCTTGTTAAT+TGG | - | chr3_1:79955777-79955796 | None:intergenic | 20.0% |
| !!! | TTTATCCCTATCTTAATTTT+TGG | + | chr3_1:79955831-79955850 | Msa0379060:intron | 20.0% |
| !! | GTAAACCAAAAATTAAGATA+GGG | - | chr3_1:79955839-79955858 | None:intergenic | 20.0% |
| !! | TGTAAACCAAAAATTAAGAT+AGG | - | chr3_1:79955840-79955859 | None:intergenic | 20.0% |
| !!! | TATCTTAATTTTTGGTTTAC+AGG | + | chr3_1:79955839-79955858 | Msa0379060:intron | 20.0% |
| !!! | TACAAAAGTGCTATTTTTTA+GGG | - | chr3_1:79956304-79956323 | None:intergenic | 20.0% |
| !!! | ATACAAAAGTGCTATTTTTT+AGG | - | chr3_1:79956305-79956324 | None:intergenic | 20.0% |
| !! | AATCTTGAATTCAAATAAGA+AGG | - | chr3_1:79956476-79956495 | None:intergenic | 20.0% |
| !! | ACAAAATTTAAGAATGGAAA+AGG | - | chr3_1:79956954-79956973 | None:intergenic | 20.0% |
| !!! | TATTTTTCTTTTGGAGATTA+TGG | - | chr3_1:79957216-79957235 | None:intergenic | 20.0% |
| !! | AAGAGATAAAAGGATATATT+AGG | + | chr3_1:79957840-79957859 | Msa0379060:intron | 20.0% |
| !! | ATAAAAGGATATATTAGGAA+AGG | + | chr3_1:79957845-79957864 | Msa0379060:intron | 20.0% |
| !! | GAGGTAAAGTAAATATATAT+AGG | + | chr3_1:79958156-79958175 | Msa0379060:intron | 20.0% |
| !! | AAGTAAATATATATAGGATG+GGG | + | chr3_1:79958162-79958181 | Msa0379060:intron | 20.0% |
| !!! | ATCAATATCTTTTCTGATTT+GGG | + | chr3_1:79958202-79958221 | Msa0379060:intron | 20.0% |
| !! | ATTAATTATACCTGCAATTA+TGG | + | chr3_1:79958388-79958407 | Msa0379060:intron | 20.0% |
| !! | ATAAAATAAAATAGATTGCG+GGG | - | chr3_1:79958445-79958464 | None:intergenic | 20.0% |
| !! | CATAAAATAAAATAGATTGC+GGG | - | chr3_1:79958446-79958465 | None:intergenic | 20.0% |
| !! | CCATAAAATAAAATAGATTG+CGG | - | chr3_1:79958447-79958466 | None:intergenic | 20.0% |
| !!! | TATTTTTTTATTTCTCAAGG+AGG | - | chr3_1:79958869-79958888 | None:intergenic | 20.0% |
| !!! | TGTTTTTTGCTATATTACTA+TGG | - | chr3_1:79958906-79958925 | None:intergenic | 20.0% |
| !!! | TTTTACTAAAAAATGAACCA+TGG | - | chr3_1:79959200-79959219 | None:intergenic | 20.0% |
| !! | TTCAAAGTACAAGATAAAAA+GGG | + | chr3_1:79959541-79959560 | Msa0379060:CDS | 20.0% |
| !! | ATGTTATCATTTACATTGAT+AGG | + | chr3_1:79959711-79959730 | Msa0379060:intron | 20.0% |
| !!! | AGTTATATGAAGTTTGTTTT+GGG | - | chr3_1:79960085-79960104 | None:intergenic | 20.0% |
| !!! | AAGTTATATGAAGTTTGTTT+TGG | - | chr3_1:79960086-79960105 | None:intergenic | 20.0% |
| !! | GATTGTTTGTAACAAAAAAA+AGG | - | chr3_1:79960241-79960260 | None:intergenic | 20.0% |
| !!! | ATAAAGCACATTTATCATTT+TGG | + | chr3_1:79960504-79960523 | Msa0379060:intron | 20.0% |
| !!! | CTTATCAAAATTAAAGTGTT+TGG | - | chr3_1:79960695-79960714 | None:intergenic | 20.0% |
| !!! | TATAGATTTAAGTTGTTTGT+TGG | + | chr3_1:79961214-79961233 | Msa0379060:intron | 20.0% |
| !! | CAATTTATAATGCATCATTA+TGG | + | chr3_1:79961248-79961267 | Msa0379060:intron | 20.0% |
| !!! | ATTTGGATATTTTATCTATG+TGG | + | chr3_1:79961275-79961294 | Msa0379060:intron | 20.0% |
| !!! | TTTTAGTTTTGAATGAGTAA+TGG | + | chr3_1:79961348-79961367 | Msa0379060:intron | 20.0% |
| !! | AACTTGTAGAAACAATTATA+TGG | - | chr3_1:79961400-79961419 | None:intergenic | 20.0% |
| !! | ATGGGAATAAATAAACAAAA+AGG | - | chr3_1:79961472-79961491 | None:intergenic | 20.0% |
| !!! | TTCAAGTAAAATTTGTTTGT+AGG | + | chr3_1:79961563-79961582 | Msa0379060:intron | 20.0% |
| !! | AGAACATAAATATTATGCTT+TGG | - | chr3_1:79961725-79961744 | None:intergenic | 20.0% |
| !! | GCATAATATTTATGTTCTTT+AGG | + | chr3_1:79961727-79961746 | Msa0379060:intron | 20.0% |
| !!! | TACAGATTTTAAACTTTTTC+CGG | - | chr3_1:79961954-79961973 | None:intergenic | 20.0% |
| !!! | CGGTTTTTATATTATTATTC+AGG | + | chr3_1:79962013-79962032 | Msa0379060:intron | 20.0% |
| !! | AAATTGTATTTAGACTATGA+GGG | + | chr3_1:79962172-79962191 | Msa0379060:CDS | 20.0% |
| !! | TCATTGTACTTTATGAAAAT+TGG | + | chr3_1:79962509-79962528 | Msa0379060:three_prime_UTR | 20.0% |
| !! | CATTGTACTTTATGAAAATT+GGG | + | chr3_1:79962510-79962529 | Msa0379060:three_prime_UTR | 20.0% |
| !!! | ATCCAATCATAATCAATTTT+GGG | - | chr3_1:79962679-79962698 | None:intergenic | 20.0% |
| !!! | AATCCAATCATAATCAATTT+TGG | - | chr3_1:79962680-79962699 | None:intergenic | 20.0% |
| ! | CTAGTATCAATTTGTCAAAT+GGG | - | chr3_1:79954284-79954303 | None:intergenic | 25.0% |
| ! | ACTAGTATCAATTTGTCAAA+TGG | - | chr3_1:79954285-79954304 | None:intergenic | 25.0% |
| ! | AATTCCATTTCCAACAAAAA+AGG | + | chr3_1:79954316-79954335 | Msa0379060:five_prime_UTR | 25.0% |
| !!! | AATTCCTTTTTTGTTGGAAA+TGG | - | chr3_1:79954323-79954342 | None:intergenic | 25.0% |
| ! | ATTCAATTTGATCGGAAAAT+TGG | - | chr3_1:79954527-79954546 | None:intergenic | 25.0% |
| ! | AATTGAATTTGAAAAGTCGT+AGG | + | chr3_1:79954539-79954558 | Msa0379060:five_prime_UTR | 25.0% |
| ! | ATCATTATTTCGATTGTTTG+GGG | + | chr3_1:79954859-79954878 | Msa0379060:intron | 25.0% |
| ! | TAAATTTCAGCTTAATTGGT+TGG | + | chr3_1:79954966-79954985 | Msa0379060:intron | 25.0% |
| ! | TCTCAATCTTATTAAGATGA+TGG | - | chr3_1:79955070-79955089 | None:intergenic | 25.0% |
| !! | TTTTAAACAGTTATCAGTTG+TGG | + | chr3_1:79955311-79955330 | Msa0379060:intron | 25.0% |
| ! | GTTTCTTATATAGATGTATG+TGG | - | chr3_1:79955352-79955371 | None:intergenic | 25.0% |
| ! | TATAGGATCTTGAATTTACA+TGG | + | chr3_1:79955545-79955564 | Msa0379060:intron | 25.0% |
| ! | ATCTTGAATTTACATGGAAT+TGG | + | chr3_1:79955551-79955570 | Msa0379060:intron | 25.0% |
| !!! | TTCATATACAGTTGTTGTTT+CGG | - | chr3_1:79955640-79955659 | None:intergenic | 25.0% |
| !! | CATTTTCTGTTAAAGGAAAT+TGG | - | chr3_1:79956546-79956565 | None:intergenic | 25.0% |
| ! | CAATTTCCTTTAACAGAAAA+TGG | + | chr3_1:79956544-79956563 | Msa0379060:intron | 25.0% |
| ! | TTTGAAAACAACAAAGAAGA+TGG | + | chr3_1:79956607-79956626 | Msa0379060:CDS | 25.0% |
| !! | GAAAAACTTTTCAGAAAAAG+AGG | - | chr3_1:79956734-79956753 | None:intergenic | 25.0% |
| ! | AAATTTAAGAATGGAAAAGG+TGG | - | chr3_1:79956951-79956970 | None:intergenic | 25.0% |
| !!! | TGTTCCTTTTTGTTTTACAA+TGG | + | chr3_1:79957027-79957046 | Msa0379060:intron | 25.0% |
| ! | TTTGCCATTGTAAAACAAAA+AGG | - | chr3_1:79957034-79957053 | None:intergenic | 25.0% |
| ! | GCATAAAACATAAAGAGAAA+AGG | + | chr3_1:79957160-79957179 | Msa0379060:intron | 25.0% |
| ! | TAAAACATAAAGAGAAAAGG+AGG | + | chr3_1:79957163-79957182 | Msa0379060:intron | 25.0% |
| ! | TGAATTTAATCAAATCCACT+AGG | + | chr3_1:79957444-79957463 | Msa0379060:intron | 25.0% |
| ! | AAGGACAAGTAACAAAAATA+TGG | + | chr3_1:79957644-79957663 | Msa0379060:intron | 25.0% |
| ! | AGGACAAGTAACAAAAATAT+GGG | + | chr3_1:79957645-79957664 | Msa0379060:intron | 25.0% |
| !!! | ATTCTAAAACATCAACTCAA+AGG | - | chr3_1:79957696-79957715 | None:intergenic | 25.0% |
| ! | ACCAACAAAATAGTAATTGA+CGG | - | chr3_1:79957763-79957782 | None:intergenic | 25.0% |
| ! | CCTTCTAAATTTCTAATACA+CGG | - | chr3_1:79957962-79957981 | None:intergenic | 25.0% |
| ! | TAGAAATTTAGAAGGAAAAG+CGG | + | chr3_1:79957967-79957986 | Msa0379060:intron | 25.0% |
| ! | TGTTGCATATATATCAAGTT+GGG | - | chr3_1:79958023-79958042 | None:intergenic | 25.0% |
| ! | TTGTTGCATATATATCAAGT+TGG | - | chr3_1:79958024-79958043 | None:intergenic | 25.0% |
| ! | ATATATGCAACAAAATATGC+AGG | + | chr3_1:79958031-79958050 | Msa0379060:intron | 25.0% |
| ! | ATTATTACACATTCTGGATT+TGG | - | chr3_1:79958065-79958084 | None:intergenic | 25.0% |
| ! | GTATCAATTATTACACATTC+TGG | - | chr3_1:79958071-79958090 | None:intergenic | 25.0% |
| !! | TGGAAAATTTTTACATCTTC+CGG | + | chr3_1:79958124-79958143 | Msa0379060:CDS | 25.0% |
| !! | CATCAATATCTTTTCTGATT+TGG | + | chr3_1:79958201-79958220 | Msa0379060:intron | 25.0% |
| ! | TAAAATAAAATAGATTGCGG+GGG | - | chr3_1:79958444-79958463 | None:intergenic | 25.0% |
| !!! | CCGCAATCTATTTTATTTTA+TGG | + | chr3_1:79958444-79958463 | Msa0379060:intron | 25.0% |
| ! | AAATTCATCAGTTCAGAAAA+TGG | + | chr3_1:79958577-79958596 | Msa0379060:intron | 25.0% |
| ! | TACAGGATATAAAATGATGA+TGG | + | chr3_1:79958682-79958701 | Msa0379060:intron | 25.0% |
| ! | AAATGTAGCATCAAAATTGA+TGG | + | chr3_1:79958985-79959004 | Msa0379060:intron | 25.0% |
| !! | TTACAGAATGACATACTTTT+AGG | - | chr3_1:79959111-79959130 | None:intergenic | 25.0% |
| !! | AACTGATCTTTTATTAACTG+AGG | + | chr3_1:79959129-79959148 | Msa0379060:intron | 25.0% |
| ! | TTATATACATTGAAGTTGCT+TGG | + | chr3_1:79959379-79959398 | Msa0379060:intron | 25.0% |
| ! | AGTACATTAAAAAGTTGGAA+AGG | - | chr3_1:79959409-79959428 | None:intergenic | 25.0% |
| ! | GTGTAAGTACATTAAAAAGT+TGG | - | chr3_1:79959414-79959433 | None:intergenic | 25.0% |
| !! | ACTTTGAAGGAAAATGTATT+GGG | - | chr3_1:79959529-79959548 | None:intergenic | 25.0% |
| !! | TACTTTGAAGGAAAATGTAT+TGG | - | chr3_1:79959530-79959549 | None:intergenic | 25.0% |
| !! | CTTTTTATCTTGTACTTTGA+AGG | - | chr3_1:79959542-79959561 | None:intergenic | 25.0% |
| ! | CTTCAAAGTACAAGATAAAA+AGG | + | chr3_1:79959540-79959559 | Msa0379060:CDS | 25.0% |
| !! | TATAAAAGTACAAGACACTA+TGG | + | chr3_1:79959773-79959792 | Msa0379060:intron | 25.0% |
| !! | ATAAAAGTACAAGACACTAT+GGG | + | chr3_1:79959774-79959793 | Msa0379060:intron | 25.0% |
| ! | TAAGTTTAGTAGTTGAGTTT+GGG | + | chr3_1:79961150-79961169 | Msa0379060:intron | 25.0% |
| !!! | GTATTGTTTTTTCTTAGACA+AGG | + | chr3_1:79961373-79961392 | Msa0379060:intron | 25.0% |
| !!! | GGTATAATAGATTTTTTTGC+TGG | + | chr3_1:79961898-79961917 | Msa0379060:intron | 25.0% |
| !!! | ACAGATTTTAAACTTTTTCC+GGG | - | chr3_1:79961953-79961972 | None:intergenic | 25.0% |
| !!! | TTATTGATTTAGTGCAGATA+AGG | + | chr3_1:79961986-79962005 | Msa0379060:intron | 25.0% |
| !!! | TAACGGTGTTTTTTTGAATT+TGG | + | chr3_1:79962127-79962146 | Msa0379060:intron | 25.0% |
| !!! | AACGGTGTTTTTTTGAATTT+GGG | + | chr3_1:79962128-79962147 | Msa0379060:intron | 25.0% |
| ! | GAAATTGTATTTAGACTATG+AGG | + | chr3_1:79962171-79962190 | Msa0379060:CDS | 25.0% |
| !! | ACAACTACATTCTTTTCTAT+AGG | + | chr3_1:79962449-79962468 | Msa0379060:three_prime_UTR | 25.0% |
| !! | GCTTGTATACTTGTAATTTT+AGG | + | chr3_1:79962550-79962569 | Msa0379060:three_prime_UTR | 25.0% |
| ! | ACAAGAATAAACGACATTAA+CGG | + | chr3_1:79962614-79962633 | Msa0379060:three_prime_UTR | 25.0% |
| ! | AAACTCAATGTCAGAAAAAA+TGG | - | chr3_1:79962650-79962669 | None:intergenic | 25.0% |
| ! | AACCCAAAATTGATTATGAT+TGG | + | chr3_1:79962674-79962693 | Msa0379060:three_prime_UTR | 25.0% |
| !!! | AAAAGCGAATTTTTCAAGCT+TGG | + | chr3_1:79954247-79954266 | Msa0379060:five_prime_UTR | 30.0% |
| ! | AACAGAAGCATACATACATA+GGG | - | chr3_1:79954690-79954709 | None:intergenic | 30.0% |
| !!! | CTTCTGTTGTTTGTTTTTTG+TGG | + | chr3_1:79954702-79954721 | Msa0379060:intron | 30.0% |
| ACTTAGAGCAGTTAAAACAT+AGG | - | chr3_1:79954820-79954839 | None:intergenic | 30.0% | |
| TCATTATTTCGATTGTTTGG+GGG | + | chr3_1:79954860-79954879 | Msa0379060:intron | 30.0% | |
| ATGAAGAACTCTGACTTTAA+TGG | + | chr3_1:79955010-79955029 | Msa0379060:intron | 30.0% | |
| !! | ACTTTAATGGTGTATTGGTT+TGG | + | chr3_1:79955023-79955042 | Msa0379060:intron | 30.0% |
| !! | CTTTAATGGTGTATTGGTTT+GGG | + | chr3_1:79955024-79955043 | Msa0379060:intron | 30.0% |
| !! | TTTAATGGTGTATTGGTTTG+GGG | + | chr3_1:79955025-79955044 | Msa0379060:intron | 30.0% |
| ! | GAGACATGATAAGATTTTCT+AGG | + | chr3_1:79955086-79955105 | Msa0379060:intron | 30.0% |
| TTGTCTACATACTTTCTGAT+TGG | - | chr3_1:79955119-79955138 | None:intergenic | 30.0% | |
| AAAGTAAATATGGACCAGAT+TGG | - | chr3_1:79955224-79955243 | None:intergenic | 30.0% | |
| ACACATGCACAAAGTAAATA+TGG | - | chr3_1:79955234-79955253 | None:intergenic | 30.0% | |
| ATATTTACTTTGTGCATGTG+TGG | + | chr3_1:79955233-79955252 | Msa0379060:intron | 30.0% | |
| TGTGTGGAATAAAGTGAATA+TGG | + | chr3_1:79955249-79955268 | Msa0379060:intron | 30.0% | |
| ACTGTATTCTTGATTCACAA+AGG | + | chr3_1:79955370-79955389 | Msa0379060:intron | 30.0% | |
| AATTTACATGGAATTGGACA+GGG | + | chr3_1:79955557-79955576 | Msa0379060:intron | 30.0% | |
| !! | TCATATACAGTTGTTGTTTC+GGG | - | chr3_1:79955639-79955658 | None:intergenic | 30.0% |
| ! | CTATTACTAACCGATTCTAA+CGG | + | chr3_1:79955696-79955715 | Msa0379060:CDS | 30.0% |
| ! | TATTACTAACCGATTCTAAC+GGG | + | chr3_1:79955697-79955716 | Msa0379060:CDS | 30.0% |
| TGAGAAAATTCAAGACATGT+AGG | - | chr3_1:79955807-79955826 | None:intergenic | 30.0% | |
| ACATCAGCCATGTATTAAAA+GGG | - | chr3_1:79956051-79956070 | None:intergenic | 30.0% | |
| TACATCAGCCATGTATTAAA+AGG | - | chr3_1:79956052-79956071 | None:intergenic | 30.0% | |
| ACAAATGATGAATTAGAGTC+TGG | - | chr3_1:79956380-79956399 | None:intergenic | 30.0% | |
| ! | CTCTAATTCATCATTTGTTG+AGG | + | chr3_1:79956382-79956401 | Msa0379060:CDS | 30.0% |
| ! | TTTGAATATCTTTTCCCGAA+GGG | - | chr3_1:79956408-79956427 | None:intergenic | 30.0% |
| TGAATTCTCATGAATGATTG+TGG | - | chr3_1:79956441-79956460 | None:intergenic | 30.0% | |
| CATTCATGAGAATTCAAAGT+AGG | + | chr3_1:79956445-79956464 | Msa0379060:intron | 30.0% | |
| !!! | AAAGTGCCATTTTCTGTTAA+AGG | - | chr3_1:79956553-79956572 | None:intergenic | 30.0% |
| !! | AACAGAAAATGGCACTTTTT+AGG | + | chr3_1:79956555-79956574 | Msa0379060:intron | 30.0% |
| ACACACATAATGATAGTTGT+GGG | - | chr3_1:79956765-79956784 | None:intergenic | 30.0% | |
| TACACACATAATGATAGTTG+TGG | - | chr3_1:79956766-79956785 | None:intergenic | 30.0% | |
| TGCATACAAATTTCAGTTCA+AGG | + | chr3_1:79956816-79956835 | Msa0379060:intron | 30.0% | |
| GCATACAAATTTCAGTTCAA+GGG | + | chr3_1:79956817-79956836 | Msa0379060:intron | 30.0% | |
| ! | AAATAAAGTACCTTCTCAAC+AGG | - | chr3_1:79956890-79956909 | None:intergenic | 30.0% |
| ATCTAGATCTAGTAATGTTC+AGG | + | chr3_1:79956977-79956996 | Msa0379060:intron | 30.0% | |
| TCTAGTAATGTTCAGGAATT+AGG | + | chr3_1:79956984-79957003 | Msa0379060:intron | 30.0% | |
| GTAAAACAAAAAGGAACAGA+GGG | - | chr3_1:79957025-79957044 | None:intergenic | 30.0% | |
| TGTAAAACAAAAAGGAACAG+AGG | - | chr3_1:79957026-79957045 | None:intergenic | 30.0% | |
| ATTTAATCAAATCCACTAGG+TGG | + | chr3_1:79957447-79957466 | Msa0379060:intron | 30.0% | |
| TTTAATCAAATCCACTAGGT+GGG | + | chr3_1:79957448-79957467 | Msa0379060:intron | 30.0% | |
| ! | TTAACCTTTTTCTAGGTTCA+GGG | - | chr3_1:79957580-79957599 | None:intergenic | 30.0% |
| AATAGTAATTGACGGTATCT+TGG | - | chr3_1:79957755-79957774 | None:intergenic | 30.0% | |
| ! | ACCGTCAATTACTATTTTGT+TGG | + | chr3_1:79957759-79957778 | Msa0379060:intron | 30.0% |
| GATGCTTGAAAAGGAATATA+AGG | + | chr3_1:79957932-79957951 | Msa0379060:intron | 30.0% | |
| CCGTGTATTAGAAATTTAGA+AGG | + | chr3_1:79957959-79957978 | Msa0379060:intron | 30.0% | |
| !! | ATCAAGTTGGGGATTAAAAA+AGG | - | chr3_1:79958011-79958030 | None:intergenic | 30.0% |
| ! | GTTGCATATATATCAAGTTG+GGG | - | chr3_1:79958022-79958041 | None:intergenic | 30.0% |
| ! | AAAATTTTTACATCTTCCGG+TGG | + | chr3_1:79958127-79958146 | Msa0379060:CDS | 30.0% |
| TTCAATTATTGTCTGTACTG+CGG | + | chr3_1:79958352-79958371 | Msa0379060:intron | 30.0% | |
| AAAATAAAATAGATTGCGGG+GGG | - | chr3_1:79958443-79958462 | None:intergenic | 30.0% | |
| ACATGAAAGTTAGACTTTCA+AGG | + | chr3_1:79958528-79958547 | Msa0379060:intron | 30.0% | |
| CATGAAAGTTAGACTTTCAA+GGG | + | chr3_1:79958529-79958548 | Msa0379060:intron | 30.0% | |
| GGATTAACATACTTCTGTAA+GGG | + | chr3_1:79958550-79958569 | Msa0379060:intron | 30.0% | |
| ATCAGTTCAGAAAATGGTAT+TGG | + | chr3_1:79958583-79958602 | Msa0379060:intron | 30.0% | |
| TACACAAACTCATGAAATCT+TGG | + | chr3_1:79958636-79958655 | Msa0379060:intron | 30.0% | |
| AAATCTTGGTAGAATTGACT+TGG | + | chr3_1:79958650-79958669 | Msa0379060:intron | 30.0% | |
| !! | TGACTTGGAAACTATTTTAC+AGG | + | chr3_1:79958665-79958684 | Msa0379060:intron | 30.0% |
| !! | ATTTTGATGCTACATTTGAC+AGG | - | chr3_1:79958982-79959001 | None:intergenic | 30.0% |
| !!! | ATCATTTTTTCCCACTATCT+AGG | + | chr3_1:79959261-79959280 | Msa0379060:intron | 30.0% |
| AACTATTGCATATCATCTGT+TGG | + | chr3_1:79959594-79959613 | Msa0379060:intron | 30.0% | |
| ACTATTGCATATCATCTGTT+GGG | + | chr3_1:79959595-79959614 | Msa0379060:intron | 30.0% | |
| TTGCTCGTTACTTATTAGTA+TGG | - | chr3_1:79959742-79959761 | None:intergenic | 30.0% | |
| ! | TTTATCATCTTTTCCACCTT+AGG | - | chr3_1:79959839-79959858 | None:intergenic | 30.0% |
| TAAGGTGGAAAAGATGATAA+AGG | + | chr3_1:79959838-79959857 | Msa0379060:intron | 30.0% | |
| AAGATGATAAAGGCTATGTT+TGG | + | chr3_1:79959848-79959867 | Msa0379060:intron | 30.0% | |
| ! | TAAGCTAGCTTATAGCTTAT+TGG | + | chr3_1:79959880-79959899 | Msa0379060:intron | 30.0% |
| !!! | ATTTTTTTTTTGGTAGTGGC+CGG | + | chr3_1:79960350-79960369 | Msa0379060:intron | 30.0% |
| ATACGATCAATGAATGTACA+AGG | + | chr3_1:79960833-79960852 | Msa0379060:intron | 30.0% | |
| TACGATCAATGAATGTACAA+GGG | + | chr3_1:79960834-79960853 | Msa0379060:intron | 30.0% | |
| !! | GTTGTTTTCATAAGTCATAC+TGG | - | chr3_1:79960972-79960991 | None:intergenic | 30.0% |
| GTAAGTTTAGTAGTTGAGTT+TGG | + | chr3_1:79961149-79961168 | Msa0379060:intron | 30.0% | |
| AAGTTTAGTAGTTGAGTTTG+GGG | + | chr3_1:79961151-79961170 | Msa0379060:intron | 30.0% | |
| TTATGCTATACCATTAAAGC+AGG | + | chr3_1:79961182-79961201 | Msa0379060:intron | 30.0% | |
| AAGACTAAATCCTGCTTTAA+TGG | - | chr3_1:79961195-79961214 | None:intergenic | 30.0% | |
| !!! | TGCTGGTTTTCTTATTAAGA+TGG | + | chr3_1:79961428-79961447 | Msa0379060:intron | 30.0% |
| !!! | GCTGGTTTTCTTATTAAGAT+GGG | + | chr3_1:79961429-79961448 | Msa0379060:intron | 30.0% |
| CTCTATGAGTAATTTACGAT+TGG | + | chr3_1:79961526-79961545 | Msa0379060:intron | 30.0% | |
| TGAGTAATTTACGATTGGAT+AGG | + | chr3_1:79961531-79961550 | Msa0379060:intron | 30.0% | |
| AGACCATGATAAAGTTGTAT+TGG | + | chr3_1:79961820-79961839 | Msa0379060:CDS | 30.0% | |
| AAGCCAATACAACTTTATCA+TGG | - | chr3_1:79961826-79961845 | None:intergenic | 30.0% | |
| !! | AGATTTTAAACTTTTTCCGG+GGG | - | chr3_1:79961951-79961970 | None:intergenic | 30.0% |
| !! | CAGATTTTAAACTTTTTCCG+GGG | - | chr3_1:79961952-79961971 | None:intergenic | 30.0% |
| !!! | ATTTGGGTTGATGATTTTGT+AGG | + | chr3_1:79962144-79962163 | Msa0379060:intron | 30.0% |
| !!! | TTTGGGTTGATGATTTTGTA+GGG | + | chr3_1:79962145-79962164 | Msa0379060:intron | 30.0% |
| AGCTTTCCGTTGATATATAA+AGG | + | chr3_1:79962355-79962374 | Msa0379060:three_prime_UTR | 30.0% | |
| !! | GATTGGCCTTTATATATCAA+CGG | - | chr3_1:79962364-79962383 | None:intergenic | 30.0% |
| TTCCAGAATATGAATATGTC+AGG | - | chr3_1:79962423-79962442 | None:intergenic | 30.0% | |
| !!! | GCATTTTTTTTTCTTCATGC+TGG | + | chr3_1:79962486-79962505 | Msa0379060:three_prime_UTR | 30.0% |
| !!! | CGAATTTTTCAAGCTTGGAA+TGG | + | chr3_1:79954252-79954271 | Msa0379060:five_prime_UTR | 35.0% |
| !!! | ATTTTTCAAGCTTGGAATGG+AGG | + | chr3_1:79954255-79954274 | Msa0379060:five_prime_UTR | 35.0% |
| GTATCAATTTGTCAAATGGG+TGG | - | chr3_1:79954281-79954300 | None:intergenic | 35.0% | |
| !!! | GTCAGCAATTCCTTTTTTGT+TGG | - | chr3_1:79954329-79954348 | None:intergenic | 35.0% |
| ! | GATGAGAATTTCAACGCTTT+TGG | - | chr3_1:79954377-79954396 | None:intergenic | 35.0% |
| TTGATCGGAAAATTGGATTC+CGG | - | chr3_1:79954520-79954539 | None:intergenic | 35.0% | |
| GAGTAGAGTAGAATTGAAGA+TGG | + | chr3_1:79954576-79954595 | Msa0379060:exon | 35.0% | |
| ! | GCTAAGGAAATTGATTTACG+AGG | - | chr3_1:79954664-79954683 | None:intergenic | 35.0% |
| ! | CAACAGAAGCATACATACAT+AGG | - | chr3_1:79954691-79954710 | None:intergenic | 35.0% |
| ACATACATCATTCGGTTGTT+TGG | + | chr3_1:79954884-79954903 | Msa0379060:intron | 35.0% | |
| CTCTGACTTTAATGGTGTAT+TGG | + | chr3_1:79955018-79955037 | Msa0379060:intron | 35.0% | |
| !! | TTAATGGTGTATTGGTTTGG+GGG | + | chr3_1:79955026-79955045 | Msa0379060:intron | 35.0% |
| GAATTTACATGGAATTGGAC+AGG | + | chr3_1:79955556-79955575 | Msa0379060:intron | 35.0% | |
| ATTTACATGGAATTGGACAG+GGG | + | chr3_1:79955558-79955577 | Msa0379060:intron | 35.0% | |
| GTCTTCAGGATTTATCTCTT+CGG | - | chr3_1:79955886-79955905 | None:intergenic | 35.0% | |
| CAAGGTTATGACAAGAAATC+CGG | + | chr3_1:79955917-79955936 | Msa0379060:CDS | 35.0% | |
| GTTTCAGAAAGGACAAATAC+CGG | - | chr3_1:79955939-79955958 | None:intergenic | 35.0% | |
| TGTATTAAAAGGGCAAGACA+CGG | - | chr3_1:79956041-79956060 | None:intergenic | 35.0% | |
| ! | TGTCTTGCCCTTTTAATACA+TGG | + | chr3_1:79956041-79956060 | Msa0379060:intron | 35.0% |
| AAAATTTAGGCATCTACCTG+TGG | + | chr3_1:79956082-79956101 | Msa0379060:CDS | 35.0% | |
| !! | AATTGCTTTTCCTTTCTCTG+CGG | - | chr3_1:79956183-79956202 | None:intergenic | 35.0% |
| TTGAAGGAGTTGAAAAACAC+TGG | + | chr3_1:79956213-79956232 | Msa0379060:CDS | 35.0% | |
| TGAAGGAGTTGAAAAACACT+GGG | + | chr3_1:79956214-79956233 | Msa0379060:CDS | 35.0% | |
| ! | AGCTCTTCGATTTGTAATGA+CGG | + | chr3_1:79956275-79956294 | Msa0379060:intron | 35.0% |
| ! | GTTTGAATATCTTTTCCCGA+AGG | - | chr3_1:79956409-79956428 | None:intergenic | 35.0% |
| ! | ATATTTCTGCGCTGTATGTT+TGG | + | chr3_1:79956513-79956532 | Msa0379060:intron | 35.0% |
| !! | GAAAATGGCACTTTTTAGGA+TGG | + | chr3_1:79956559-79956578 | Msa0379060:intron | 35.0% |
| ! | GTTTTCAAAACTGAGTCTGT+TGG | - | chr3_1:79956596-79956615 | None:intergenic | 35.0% |
| TTTGCCATCAACAGTAACAA+CGG | - | chr3_1:79956654-79956673 | None:intergenic | 35.0% | |
| CACACATAATGATAGTTGTG+GGG | - | chr3_1:79956764-79956783 | None:intergenic | 35.0% | |
| ! | GTATCTTGACTTTGACCTTT+TGG | - | chr3_1:79957085-79957104 | None:intergenic | 35.0% |
| AGTCACAGAATAGTAGTACA+AGG | + | chr3_1:79957108-79957127 | Msa0379060:intron | 35.0% | |
| TTTGGAGATTATGGAGCTAT+GGG | - | chr3_1:79957207-79957226 | None:intergenic | 35.0% | |
| !! | TTTTGGAGATTATGGAGCTA+TGG | - | chr3_1:79957208-79957227 | None:intergenic | 35.0% |
| ! | TGCTTTGTTCTTTCCTTTCT+CGG | - | chr3_1:79957276-79957295 | None:intergenic | 35.0% |
| TGCCATATCCTACTCATAAA+AGG | + | chr3_1:79957375-79957394 | Msa0379060:intron | 35.0% | |
| ! | CTCCTTTTATGAGTAGGATA+TGG | - | chr3_1:79957380-79957399 | None:intergenic | 35.0% |
| TCCTACTCATAAAAGGAGTA+AGG | + | chr3_1:79957382-79957401 | Msa0379060:intron | 35.0% | |
| !!! | ATGCAAGTGTTTTTTTTGGC+TGG | - | chr3_1:79957420-79957439 | None:intergenic | 35.0% |
| !!! | CCTCATGCAAGTGTTTTTTT+TGG | - | chr3_1:79957424-79957443 | None:intergenic | 35.0% |
| CCAAAAAAAACACTTGCATG+AGG | + | chr3_1:79957421-79957440 | Msa0379060:intron | 35.0% | |
| TTAATCAAATCCACTAGGTG+GGG | + | chr3_1:79957449-79957468 | Msa0379060:intron | 35.0% | |
| CAGAGAAAATGAAATCACTC+CGG | + | chr3_1:79957489-79957508 | Msa0379060:intron | 35.0% | |
| !!! | TTTTTTGTTGGTTTGGCATG+CGG | - | chr3_1:79957537-79957556 | None:intergenic | 35.0% |
| ! | CTTAACCTTTTTCTAGGTTC+AGG | - | chr3_1:79957581-79957600 | None:intergenic | 35.0% |
| ! | GGTGTTCTTAACCTTTTTCT+AGG | - | chr3_1:79957587-79957606 | None:intergenic | 35.0% |
| TGGTATAGTGTGTTTAGATG+GGG | - | chr3_1:79957610-79957629 | None:intergenic | 35.0% | |
| GTGGTATAGTGTGTTTAGAT+GGG | - | chr3_1:79957611-79957630 | None:intergenic | 35.0% | |
| TGTGGTATAGTGTGTTTAGA+TGG | - | chr3_1:79957612-79957631 | None:intergenic | 35.0% | |
| TACCACACTCTACTAAAGAA+AGG | + | chr3_1:79957625-79957644 | Msa0379060:intron | 35.0% | |
| TCAACTCAAAGGAACAAAGT+GGG | - | chr3_1:79957685-79957704 | None:intergenic | 35.0% | |
| ATCAACTCAAAGGAACAAAG+TGG | - | chr3_1:79957686-79957705 | None:intergenic | 35.0% | |
| TCGTCTATACTAACGACATA+TGG | - | chr3_1:79957914-79957933 | None:intergenic | 35.0% | |
| AGTATAGACGATGCTTGAAA+AGG | + | chr3_1:79957923-79957942 | Msa0379060:intron | 35.0% | |
| AAAGGAATGAACACCCAAAA+TGG | - | chr3_1:79957993-79958012 | None:intergenic | 35.0% | |
| !!! | ATCTTTTCTGATTTGGGTGT+TGG | + | chr3_1:79958208-79958227 | Msa0379060:intron | 35.0% |
| GGGATTAACATACTTCTGTA+AGG | + | chr3_1:79958549-79958568 | Msa0379060:intron | 35.0% | |
| TTTACTATGCACGTTGTGAT+TGG | - | chr3_1:79958716-79958735 | None:intergenic | 35.0% | |
| !! | TTTTATTTCTCAAGGAGGCA+TGG | - | chr3_1:79958864-79958883 | None:intergenic | 35.0% |
| !!! | CTGGCGTAGGTTTATTTTAT+TGG | - | chr3_1:79958958-79958977 | None:intergenic | 35.0% |
| CAATAAAATAAACCTACGCC+AGG | + | chr3_1:79958956-79958975 | Msa0379060:intron | 35.0% | |
| ! | TAGTGCTGAGAATTGTCAAA+TGG | + | chr3_1:79959160-79959179 | Msa0379060:intron | 35.0% |
| !!! | TTTTTTCCCACTATCTAGGT+CGG | + | chr3_1:79959265-79959284 | Msa0379060:intron | 35.0% |
| GTTTCATCGTCATCATCATT+TGG | - | chr3_1:79959352-79959371 | None:intergenic | 35.0% | |
| ! | TCCTTCAAAATAGGTTCTGA+TGG | + | chr3_1:79959460-79959479 | Msa0379060:CDS | 35.0% |
| !! | TCCATCAGAACCTATTTTGA+AGG | - | chr3_1:79959464-79959483 | None:intergenic | 35.0% |
| ! | TTCAAAATAGGTTCTGATGG+AGG | + | chr3_1:79959463-79959482 | Msa0379060:CDS | 35.0% |
| GCTTGCAGAAATATAAGGAA+GGG | - | chr3_1:79959503-79959522 | None:intergenic | 35.0% | |
| TGCTTGCAGAAATATAAGGA+AGG | - | chr3_1:79959504-79959523 | None:intergenic | 35.0% | |
| AGAATGCATAGATTCACATG+TGG | + | chr3_1:79959565-79959584 | Msa0379060:CDS | 35.0% | |
| ! | TTTTTATCTATCTGCGTGCA+CGG | + | chr3_1:79959630-79959649 | Msa0379060:intron | 35.0% |
| GAAAGTTGTAGTTACACCTA+AGG | + | chr3_1:79959820-79959839 | Msa0379060:intron | 35.0% | |
| !!! | GAGTGGGTTTTAATTTGAGT+GGG | - | chr3_1:79960059-79960078 | None:intergenic | 35.0% |
| !!! | TGAGTGGGTTTTAATTTGAG+TGG | - | chr3_1:79960060-79960079 | None:intergenic | 35.0% |
| !!! | AGTTTGTTTTGGGAATGAGT+GGG | - | chr3_1:79960075-79960094 | None:intergenic | 35.0% |
| !!! | AAGTTTGTTTTGGGAATGAG+TGG | - | chr3_1:79960076-79960095 | None:intergenic | 35.0% |
| TCATACTGCATTCAAAACCA+AGG | + | chr3_1:79960195-79960214 | Msa0379060:intron | 35.0% | |
| !!! | TTTTTTTTTTGGTAGTGGCC+GGG | + | chr3_1:79960351-79960370 | Msa0379060:intron | 35.0% |
| GACAATGCATAAACTATGCA+AGG | - | chr3_1:79960391-79960410 | None:intergenic | 35.0% | |
| TTCTTGACAAGGAATCTGTT+TGG | - | chr3_1:79961112-79961131 | None:intergenic | 35.0% | |
| TCTGACATACTTTCTTGACA+AGG | - | chr3_1:79961123-79961142 | None:intergenic | 35.0% | |
| TGCATCATTATGGGAAGATT+TGG | + | chr3_1:79961258-79961277 | Msa0379060:intron | 35.0% | |
| ! | CTACAAGTTTTCTTCATTGC+TGG | + | chr3_1:79961411-79961430 | Msa0379060:intron | 35.0% |
| AGTTCTATCCTTCAAAGACT+TGG | + | chr3_1:79961655-79961674 | Msa0379060:CDS | 35.0% | |
| TATCAGTACCAAGTCTTTGA+AGG | - | chr3_1:79961666-79961685 | None:intergenic | 35.0% | |
| ! | GAATTTGAGGCAGATTGTTA+GGG | - | chr3_1:79961693-79961712 | None:intergenic | 35.0% |
| ! | AGAATTTGAGGCAGATTGTT+AGG | - | chr3_1:79961694-79961713 | None:intergenic | 35.0% |
| TAACAATCTGCCTCAAATTC+TGG | + | chr3_1:79961693-79961712 | Msa0379060:CDS | 35.0% | |
| !! | TTGGAAAGTACCAGAATTTG+AGG | - | chr3_1:79961706-79961725 | None:intergenic | 35.0% |
| TCGTCAGCTTATGAAAAGTA+GGG | - | chr3_1:79961776-79961795 | None:intergenic | 35.0% | |
| ! | TAAATGTGATATTTTGCCCC+CGG | + | chr3_1:79961932-79961951 | Msa0379060:intron | 35.0% |
| TTTAGTGCAGATAAGGATGA+CGG | + | chr3_1:79961993-79962012 | Msa0379060:intron | 35.0% | |
| TCAAAATGGTCTCTGCAATT+TGG | + | chr3_1:79962102-79962121 | Msa0379060:intron | 35.0% | |
| CTCGCTTCAAGTATGTTAAA+AGG | - | chr3_1:79962315-79962334 | None:intergenic | 35.0% | |
| ! | AGTTCCAGTATGCTTTAGAT+TGG | - | chr3_1:79962381-79962400 | None:intergenic | 35.0% |
| AAGCATACTGGAACTTTGTA+TGG | + | chr3_1:79962386-79962405 | Msa0379060:three_prime_UTR | 35.0% | |
| CACCTGACATATTCATATTC+TGG | + | chr3_1:79962418-79962437 | Msa0379060:three_prime_UTR | 35.0% | |
| TACAAGTATACAAGCAGCAA+GGG | - | chr3_1:79962545-79962564 | None:intergenic | 35.0% | |
| TTACAAGTATACAAGCAGCA+AGG | - | chr3_1:79962546-79962565 | None:intergenic | 35.0% | |
| TTGGGGGAACATACATCATT+CGG | + | chr3_1:79954876-79954895 | Msa0379060:intron | 40.0% | |
| GTGTCAATGTCAAACAAACG+TGG | + | chr3_1:79954938-79954957 | Msa0379060:intron | 40.0% | |
| GTAGACAAAGTGCACTCTTA+AGG | + | chr3_1:79955131-79955150 | Msa0379060:intron | 40.0% | |
| CTTGATTCACAAAGGACTAG+AGG | + | chr3_1:79955378-79955397 | Msa0379060:intron | 40.0% | |
| AAGAGAAGATAAGCGAGTGA+GGG | + | chr3_1:79955501-79955520 | Msa0379060:intron | 40.0% | |
| GAAGTCATTGCGTCTTTCAA+AGG | + | chr3_1:79955602-79955621 | Msa0379060:CDS | 40.0% | |
| CTGTATATGAAGCTTGTCGT+CGG | + | chr3_1:79955649-79955668 | Msa0379060:CDS | 40.0% | |
| ACAAAGCAACCCGTTAGAAT+CGG | - | chr3_1:79955709-79955728 | None:intergenic | 40.0% | |
| CTTGTCATAACCTTGGAAAC+AGG | - | chr3_1:79955912-79955931 | None:intergenic | 40.0% | |
| CGGATTTCTTGTCATAACCT+TGG | - | chr3_1:79955919-79955938 | None:intergenic | 40.0% | |
| GTACGTCGACAGGAAAATTT+AGG | + | chr3_1:79956069-79956088 | Msa0379060:intron | 40.0% | |
| GAAGGAGTTGAAAAACACTG+GGG | + | chr3_1:79956215-79956234 | Msa0379060:CDS | 40.0% | |
| TGAATGATTGTGGACAGTGA+TGG | - | chr3_1:79956431-79956450 | None:intergenic | 40.0% | |
| AAGATGGTTGAACTTCATGC+AGG | + | chr3_1:79956623-79956642 | Msa0379060:CDS | 40.0% | |
| CATAATGATAGTTGTGGGGA+TGG | - | chr3_1:79956760-79956779 | None:intergenic | 40.0% | |
| GTTCAAGGGATATCTTGATG+CGG | + | chr3_1:79956831-79956850 | Msa0379060:intron | 40.0% | |
| TTCAAGGGATATCTTGATGC+GGG | + | chr3_1:79956832-79956851 | Msa0379060:CDS | 40.0% | |
| AGAATGGAAAAGGTGGACAA+GGG | - | chr3_1:79956944-79956963 | None:intergenic | 40.0% | |
| AAGAATGGAAAAGGTGGACA+AGG | - | chr3_1:79956945-79956964 | None:intergenic | 40.0% | |
| TTAACGCAAAGCAGACCAAA+AGG | + | chr3_1:79957067-79957086 | Msa0379060:intron | 40.0% | |
| !! | TACAAGGAGTACTCAAATCC+AGG | + | chr3_1:79957124-79957143 | Msa0379060:intron | 40.0% |
| !!! | TATGCTGTTTCTTTTCGTCC+TGG | - | chr3_1:79957145-79957164 | None:intergenic | 40.0% |
| TTGGAGATTATGGAGCTATG+GGG | - | chr3_1:79957206-79957225 | None:intergenic | 40.0% | |
| !!! | CTGTGGGGGTATTTTTCTTT+TGG | - | chr3_1:79957225-79957244 | None:intergenic | 40.0% |
| CAAAAGAAAAATACCCCCAC+AGG | + | chr3_1:79957223-79957242 | Msa0379060:intron | 40.0% | |
| GAGAAAGGAAAGAACAAAGC+AGG | + | chr3_1:79957275-79957294 | Msa0379060:intron | 40.0% | |
| TGGCACCATTAAAGACTTGT+GGG | - | chr3_1:79957343-79957362 | None:intergenic | 40.0% | |
| ! | GCCTTACTCCTTTTATGAGT+AGG | - | chr3_1:79957386-79957405 | None:intergenic | 40.0% |
| ! | CGGAGTGATTTCATTTTCTC+TGG | - | chr3_1:79957491-79957510 | None:intergenic | 40.0% |
| TGTAGACTATCTGGAGATAC+CGG | - | chr3_1:79957511-79957530 | None:intergenic | 40.0% | |
| GTATAGTGTGTTTAGATGGG+GGG | - | chr3_1:79957608-79957627 | None:intergenic | 40.0% | |
| GGTATAGTGTGTTTAGATGG+GGG | - | chr3_1:79957609-79957628 | None:intergenic | 40.0% | |
| GTCCTTTCTTTAGTAGAGTG+TGG | - | chr3_1:79957630-79957649 | None:intergenic | 40.0% | |
| GAACAAAGTGGGTATGGAAT+CGG | - | chr3_1:79957674-79957693 | None:intergenic | 40.0% | |
| TCAAAGGAACAAAGTGGGTA+TGG | - | chr3_1:79957680-79957699 | None:intergenic | 40.0% | |
| ! | GTATGAAGTGCATCGACAAT+TGG | - | chr3_1:79958095-79958114 | None:intergenic | 40.0% |
| GCACTTCATACTATGCATGA+TGG | + | chr3_1:79958104-79958123 | Msa0379060:CDS | 40.0% | |
| ACTTTACCTCTATCAACCAC+CGG | - | chr3_1:79958146-79958165 | None:intergenic | 40.0% | |
| !!! | TTTTCTGATTTGGGTGTTGG+TGG | + | chr3_1:79958211-79958230 | Msa0379060:intron | 40.0% |
| TGTACATTGCTAGCTGTAGA+GGG | - | chr3_1:79958419-79958438 | None:intergenic | 40.0% | |
| TTGTACATTGCTAGCTGTAG+AGG | - | chr3_1:79958420-79958439 | None:intergenic | 40.0% | |
| !! | ATGGTATTGGTGTACTGTCA+AGG | + | chr3_1:79958596-79958615 | Msa0379060:intron | 40.0% |
| TGGCAAATACTACGATTCCA+TGG | + | chr3_1:79959180-79959199 | Msa0379060:intron | 40.0% | |
| TTGTTTCCGACCTAGATAGT+GGG | - | chr3_1:79959274-79959293 | None:intergenic | 40.0% | |
| ! | CACCTTGATGCAAAGGTTTT+GGG | + | chr3_1:79959306-79959325 | Msa0379060:CDS | 40.0% |
| ATCCCAAAACCTTTGCATCA+AGG | - | chr3_1:79959311-79959330 | None:intergenic | 40.0% | |
| TCATCGTCATCATCATTTGG+AGG | - | chr3_1:79959349-79959368 | None:intergenic | 40.0% | |
| ! | ATGATGACGATGAAACACGA+AGG | + | chr3_1:79959356-79959375 | Msa0379060:CDS | 40.0% |
| !! | TATTTTGAAGGAGCTCTCAC+TGG | - | chr3_1:79959452-79959471 | None:intergenic | 40.0% |
| AGTGAGAGCTCCTTCAAAAT+AGG | + | chr3_1:79959451-79959470 | Msa0379060:intron | 40.0% | |
| GGCATGCTTGCAGAAATATA+AGG | - | chr3_1:79959508-79959527 | None:intergenic | 40.0% | |
| ! | TGCACGGCAAAAGCATATAA+GGG | + | chr3_1:79959646-79959665 | Msa0379060:intron | 40.0% |
| GTACAAGACACTATGGGATT+AGG | + | chr3_1:79959780-79959799 | Msa0379060:intron | 40.0% | |
| AGTTGTAGTTACACCTAAGG+TGG | + | chr3_1:79959823-79959842 | Msa0379060:intron | 40.0% | |
| AATTTGAGTGGGTCGTTACA+AGG | - | chr3_1:79960048-79960067 | None:intergenic | 40.0% | |
| ! | ATACTGATTGTTCGTAGCCT+TGG | - | chr3_1:79960215-79960234 | None:intergenic | 40.0% |
| !!! | TTTTTTTTTGGTAGTGGCCG+GGG | + | chr3_1:79960352-79960371 | Msa0379060:intron | 40.0% |
| TGCATAAACTATGCAAGGTC+CGG | - | chr3_1:79960386-79960405 | None:intergenic | 40.0% | |
| TGAATGTACAAGGGTCTGTT+TGG | + | chr3_1:79960843-79960862 | Msa0379060:intron | 40.0% | |
| CATAGCGTTTATGAGACTTC+AGG | + | chr3_1:79960893-79960912 | Msa0379060:intron | 40.0% | |
| AAGTCATACTGGAGAGCTTA+TGG | - | chr3_1:79960961-79960980 | None:intergenic | 40.0% | |
| ACTAAAACCCAAGCAAACAC+CGG | - | chr3_1:79961335-79961354 | None:intergenic | 40.0% | |
| TGCATACGAGTTTAGATACC+CGG | + | chr3_1:79961614-79961633 | Msa0379060:intron | 40.0% | |
| CTTATGAAAAGTAGGGGATG+GGG | - | chr3_1:79961769-79961788 | None:intergenic | 40.0% | |
| GCTTATGAAAAGTAGGGGAT+GGG | - | chr3_1:79961770-79961789 | None:intergenic | 40.0% | |
| AGCTTATGAAAAGTAGGGGA+TGG | - | chr3_1:79961771-79961790 | None:intergenic | 40.0% | |
| CGTCAGCTTATGAAAAGTAG+GGG | - | chr3_1:79961775-79961794 | None:intergenic | 40.0% | |
| CTCGTCAGCTTATGAAAAGT+AGG | - | chr3_1:79961777-79961796 | None:intergenic | 40.0% | |
| GGGGGCAAAATATCACATTT+AGG | - | chr3_1:79961933-79961952 | None:intergenic | 40.0% | |
| GTCTCTGCAATTTGGACTAA+CGG | + | chr3_1:79962110-79962129 | Msa0379060:intron | 40.0% | |
| ! | AAGGCCAATCTAAAGCATAC+TGG | + | chr3_1:79962374-79962393 | Msa0379060:three_prime_UTR | 40.0% |
| AAAGGAATTGCTGACGTGCA+CGG | + | chr3_1:79954334-79954353 | Msa0379060:five_prime_UTR | 45.0% | |
| AACGGAGAGAGAAGGAAGAA+GGG | - | chr3_1:79954465-79954484 | None:intergenic | 45.0% | |
| AAACGGAGAGAGAAGGAAGA+AGG | - | chr3_1:79954466-79954485 | None:intergenic | 45.0% | |
| AGAGGATAAACGGAGAGAGA+AGG | - | chr3_1:79954473-79954492 | None:intergenic | 45.0% | |
| CGAAGGGGAAAGAGGATAAA+CGG | - | chr3_1:79954483-79954502 | None:intergenic | 45.0% | |
| AATTGAAGATGGCGAGTCGA+AGG | + | chr3_1:79954587-79954606 | Msa0379060:exon | 45.0% | |
| TACATACATAGGGCGTGCTA+AGG | - | chr3_1:79954680-79954699 | None:intergenic | 45.0% | |
| ! | TGTTTCTGCAGTTCTTCTGC+TGG | + | chr3_1:79955164-79955183 | Msa0379060:intron | 45.0% |
| GAAGAGAAGATAAGCGAGTG+AGG | + | chr3_1:79955500-79955519 | Msa0379060:intron | 45.0% | |
| GAATTGGACAGGGGTTTAAC+AGG | + | chr3_1:79955567-79955586 | Msa0379060:intron | 45.0% | |
| ATATGAAGCTTGTCGTCGGA+TGG | + | chr3_1:79955653-79955672 | Msa0379060:CDS | 45.0% | |
| !! | GATTCTAACGGGTTGCTTTG+TGG | + | chr3_1:79955708-79955727 | Msa0379060:CDS | 45.0% |
| TTGTGGAATCCTCACAGACA+AGG | + | chr3_1:79955725-79955744 | Msa0379060:CDS | 45.0% | |
| TTGGAAACAGGTGTGTCTTC+AGG | - | chr3_1:79955900-79955919 | None:intergenic | 45.0% | |
| TGAAGACACACCTGTTTCCA+AGG | + | chr3_1:79955899-79955918 | Msa0379060:CDS | 45.0% | |
| CCACAGCAAGAGTTTCAGAA+AGG | - | chr3_1:79955950-79955969 | None:intergenic | 45.0% | |
| !! | CCTTTCTGAAACTCTTGCTG+TGG | + | chr3_1:79955947-79955966 | Msa0379060:CDS | 45.0% |
| ! | ACCTTGCACCATCTTTTGGA+GGG | - | chr3_1:79955976-79955995 | None:intergenic | 45.0% |
| ! | AACCTTGCACCATCTTTTGG+AGG | - | chr3_1:79955977-79955996 | None:intergenic | 45.0% |
| TCCAAAAGATGGTGCAAGGT+TGG | + | chr3_1:79955976-79955995 | Msa0379060:intron | 45.0% | |
| ! | ACCAACCTTGCACCATCTTT+TGG | - | chr3_1:79955980-79955999 | None:intergenic | 45.0% |
| ATTTAGGCATCTACCTGTGG+TGG | + | chr3_1:79956085-79956104 | Msa0379060:CDS | 45.0% | |
| ! | GGTGGAGAATGGAGAAGTTT+TGG | + | chr3_1:79956103-79956122 | Msa0379060:CDS | 45.0% |
| ATGCTACTGCACGTATGGAA+AGG | + | chr3_1:79956156-79956175 | Msa0379060:CDS | 45.0% | |
| TGCTACTGCACGTATGGAAA+GGG | + | chr3_1:79956157-79956176 | Msa0379060:CDS | 45.0% | |
| CACTGGGGATCTTCTAATTC+TGG | + | chr3_1:79956230-79956249 | Msa0379060:CDS | 45.0% | |
| AACTCGGCTGTTAGAAACTG+CGG | - | chr3_1:79956331-79956350 | None:intergenic | 45.0% | |
| ! | CATCATTTGTTGAGGCCCTT+CGG | + | chr3_1:79956390-79956409 | Msa0379060:CDS | 45.0% |
| ! | ATCATTTGTTGAGGCCCTTC+GGG | + | chr3_1:79956391-79956410 | Msa0379060:CDS | 45.0% |
| ! | TGTGCCGTTGTTACTGTTGA+TGG | + | chr3_1:79956647-79956666 | Msa0379060:CDS | 45.0% |
| GGCATCGTTACGTAAGTTTG+TGG | + | chr3_1:79956680-79956699 | Msa0379060:intron | 45.0% | |
| !! | TTCTCAACAGGAGTTGATGC+TGG | - | chr3_1:79956878-79956897 | None:intergenic | 45.0% |
| AGCATCAACTCCTGTTGAGA+AGG | + | chr3_1:79956877-79956896 | Msa0379060:CDS | 45.0% | |
| TGGAGATTATGGAGCTATGG+GGG | - | chr3_1:79957205-79957224 | None:intergenic | 45.0% | |
| !!! | CTGGTTTGGTTCTTTTGGGT+CGG | - | chr3_1:79957253-79957272 | None:intergenic | 45.0% |
| !!! | TCGGCTGGTTTGGTTCTTTT+GGG | - | chr3_1:79957257-79957276 | None:intergenic | 45.0% |
| TTGTTCTTTCCTTTCTCGGC+TGG | - | chr3_1:79957272-79957291 | None:intergenic | 45.0% | |
| !! | ACTTGTGGGCTGGATAATAC+AGG | - | chr3_1:79957329-79957348 | None:intergenic | 45.0% |
| TCCAGCCCACAAGTCTTTAA+TGG | + | chr3_1:79957335-79957354 | Msa0379060:intron | 45.0% | |
| ACCATTAAAGACTTGTGGGC+TGG | - | chr3_1:79957339-79957358 | None:intergenic | 45.0% | |
| CTGGCACCATTAAAGACTTG+TGG | - | chr3_1:79957344-79957363 | None:intergenic | 45.0% | |
| ! | TAATGGTGCCAGCAAAGAAG+AGG | + | chr3_1:79957352-79957371 | Msa0379060:intron | 45.0% |
| ATATGGCACCTCTTCTTTGC+TGG | - | chr3_1:79957363-79957382 | None:intergenic | 45.0% | |
| TAAAAGGAGTAAGGCTGTCC+AGG | + | chr3_1:79957391-79957410 | Msa0379060:intron | 45.0% | |
| !!! | GTTTTTTTTGGCTGGTGACC+TGG | - | chr3_1:79957412-79957431 | None:intergenic | 45.0% |
| TATATTAGAGCCCCACCTAG+TGG | - | chr3_1:79957462-79957481 | None:intergenic | 45.0% | |
| ATGCGGTTGTGTAGACTATC+TGG | - | chr3_1:79957520-79957539 | None:intergenic | 45.0% | |
| !!! | GGCGCTGTTTTTTGTTGGTT+TGG | - | chr3_1:79957544-79957563 | None:intergenic | 45.0% |
| !!! | GTCTAGGCGCTGTTTTTTGT+TGG | - | chr3_1:79957549-79957568 | None:intergenic | 45.0% |
| ! | CTTTTTCTAGGTTCAGGGAG+AGG | - | chr3_1:79957575-79957594 | None:intergenic | 45.0% |
| CTCTCCCTGAACCTAGAAAA+AGG | + | chr3_1:79957573-79957592 | Msa0379060:intron | 45.0% | |
| ! | AGAAGGAAAAGCGGCCATTT+TGG | + | chr3_1:79957976-79957995 | Msa0379060:intron | 45.0% |
| !! | GAAGGAAAAGCGGCCATTTT+GGG | + | chr3_1:79957977-79957996 | Msa0379060:intron | 45.0% |
| !! | TGTTGGTGGTTGGAAACAGA+TGG | + | chr3_1:79958225-79958244 | Msa0379060:intron | 45.0% |
| TACATTGCTAGCTGTAGAGG+GGG | - | chr3_1:79958417-79958436 | None:intergenic | 45.0% | |
| GTACATTGCTAGCTGTAGAG+GGG | - | chr3_1:79958418-79958437 | None:intergenic | 45.0% | |
| ACATTGCAATTGGCAGTGCA+CGG | + | chr3_1:79958786-79958805 | Msa0379060:intron | 45.0% | |
| TAGTACACACAAAGGGGATG+GGG | - | chr3_1:79958836-79958855 | None:intergenic | 45.0% | |
| CTAGTACACACAAAGGGGAT+GGG | - | chr3_1:79958837-79958856 | None:intergenic | 45.0% | |
| GTAGCCTAGTACACACAAAG+GGG | - | chr3_1:79958842-79958861 | None:intergenic | 45.0% | |
| GGTAGCCTAGTACACACAAA+GGG | - | chr3_1:79958843-79958862 | None:intergenic | 45.0% | |
| TGGTAGCCTAGTACACACAA+AGG | - | chr3_1:79958844-79958863 | None:intergenic | 45.0% | |
| ! | GTTGTTTCCGACCTAGATAG+TGG | - | chr3_1:79959275-79959294 | None:intergenic | 45.0% |
| AAACCTTTGCATCAAGGTGG+TGG | - | chr3_1:79959305-79959324 | None:intergenic | 45.0% | |
| CCAAAACCTTTGCATCAAGG+TGG | - | chr3_1:79959308-79959327 | None:intergenic | 45.0% | |
| ! | CCACCTTGATGCAAAGGTTT+TGG | + | chr3_1:79959305-79959324 | Msa0379060:CDS | 45.0% |
| !!! | AAGGTTTTGGGATTCTGCCA+TGG | + | chr3_1:79959318-79959337 | Msa0379060:CDS | 45.0% |
| GTCATCATCATTTGGAGGCA+AGG | - | chr3_1:79959344-79959363 | None:intergenic | 45.0% | |
| GTTCTGATGGAGGAGAAACA+GGG | + | chr3_1:79959473-79959492 | Msa0379060:CDS | 45.0% | |
| ! | GTGCACGGCAAAAGCATATA+AGG | + | chr3_1:79959645-79959664 | Msa0379060:intron | 45.0% |
| CATAAACTATGCAAGGTCCG+GGG | - | chr3_1:79960384-79960403 | None:intergenic | 45.0% | |
| GCATAAACTATGCAAGGTCC+GGG | - | chr3_1:79960385-79960404 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCAGTTGGTT+GGG | - | chr3_1:79960413-79960432 | None:intergenic | 45.0% | |
| !! | ACCACCTATGGTGGGATTTT+GGG | - | chr3_1:79960799-79960818 | None:intergenic | 45.0% |
| !! | AACCACCTATGGTGGGATTT+TGG | - | chr3_1:79960800-79960819 | None:intergenic | 45.0% |
| AAATCCCACCATAGGTGGTT+TGG | + | chr3_1:79960800-79960819 | Msa0379060:intron | 45.0% | |
| ATGACCAAACCACCTATGGT+GGG | - | chr3_1:79960807-79960826 | None:intergenic | 45.0% | |
| ACACATGACCAAACCACCTA+TGG | - | chr3_1:79960811-79960830 | None:intergenic | 45.0% | |
| TGGCAAATCCTACTACCTAG+TGG | + | chr3_1:79961295-79961314 | Msa0379060:intron | 45.0% | |
| GGCAAATCCTACTACCTAGT+GGG | + | chr3_1:79961296-79961315 | Msa0379060:intron | 45.0% | |
| GAAAGAACCGGTGTTTGCTT+GGG | + | chr3_1:79961325-79961344 | Msa0379060:intron | 45.0% | |
| TTTAGATACCCGGAGCATGA+CGG | + | chr3_1:79961624-79961643 | Msa0379060:intron | 45.0% | |
| TTATAACCTCCGTCATGCTC+CGG | - | chr3_1:79961636-79961655 | None:intergenic | 45.0% | |
| TCAAACCAACAGTCCTTGCA+TGG | - | chr3_1:79961877-79961896 | None:intergenic | 45.0% | |
| !! | TGCAAGGACTGTTGGTTTGA+AGG | + | chr3_1:79961877-79961896 | Msa0379060:CDS | 45.0% |
| TTAGACTATGAGGGAACACG+TGG | + | chr3_1:79962181-79962200 | Msa0379060:CDS | 45.0% | |
| TCACAGGAAAGGTTCACGTT+CGG | + | chr3_1:79962204-79962223 | Msa0379060:CDS | 45.0% | |
| AGCATGCGTATTCAGATGCA+TGG | + | chr3_1:79962236-79962255 | Msa0379060:CDS | 45.0% | |
| GCATGCGTATTCAGATGCAT+GGG | + | chr3_1:79962237-79962256 | Msa0379060:CDS | 45.0% | |
| AGCAACACCACTATATGCTG+AGG | - | chr3_1:79962263-79962282 | None:intergenic | 45.0% | |
| CTTGAAGCGAGTTTGATCGA+AGG | + | chr3_1:79962324-79962343 | Msa0379060:exon | 45.0% | |
| TCTTGTACACAACACAGCCT+CGG | - | chr3_1:79962600-79962619 | None:intergenic | 45.0% | |
| !!! | TATTTATACTTATTTTTTAT+GGG | - | chr3_1:79961490-79961509 | None:intergenic | 5.0% |
| !!! | ATATTTATACTTATTTTTTA+TGG | - | chr3_1:79961491-79961510 | None:intergenic | 5.0% |
| !! | AAAAAATAAGTATAAATATA+AGG | + | chr3_1:79961492-79961511 | Msa0379060:intron | 5.0% |
| !! | AAAAATAAGTATAAATATAA+GGG | + | chr3_1:79961493-79961512 | Msa0379060:intron | 5.0% |
| ACCACGCTACCTTTCTGTCT+AGG | + | chr3_1:79954432-79954451 | Msa0379060:five_prime_UTR | 50.0% | |
| CCACGCTACCTTTCTGTCTA+GGG | + | chr3_1:79954433-79954452 | Msa0379060:five_prime_UTR | 50.0% | |
| GGAAGGAACCCTAGACAGAA+AGG | - | chr3_1:79954444-79954463 | None:intergenic | 50.0% | |
| GAGAGAGAAGGAAGAAGGGA+AGG | - | chr3_1:79954461-79954480 | None:intergenic | 50.0% | |
| TTATCCTCTTTCCCCTTCGC+CGG | + | chr3_1:79954484-79954503 | Msa0379060:five_prime_UTR | 50.0% | |
| ACAGGGGTTTAACAGGAGAG+CGG | + | chr3_1:79955574-79955593 | Msa0379060:intron | 50.0% | |
| ! | TAATAGAGCATCCACCCTCC+GGG | - | chr3_1:79955682-79955701 | None:intergenic | 50.0% |
| ! | GTAATAGAGCATCCACCCTC+CGG | - | chr3_1:79955683-79955702 | None:intergenic | 50.0% |
| AGTCACACACCTTGTCTGTG+AGG | - | chr3_1:79955737-79955756 | None:intergenic | 50.0% | |
| TGTGGAAGCCCTCCAAAAGA+TGG | + | chr3_1:79955965-79955984 | Msa0379060:CDS | 50.0% | |
| ! | CATCTACCTGTGGTGGAGAA+TGG | + | chr3_1:79956092-79956111 | Msa0379060:CDS | 50.0% |
| ACTTCTCCATTCTCCACCAC+AGG | - | chr3_1:79956101-79956120 | None:intergenic | 50.0% | |
| GCAATTGCAGCAGCTGTTGA+AGG | + | chr3_1:79956197-79956216 | Msa0379060:CDS | 50.0% | |
| ACTCGGCTGTTAGAAACTGC+GGG | - | chr3_1:79956330-79956349 | None:intergenic | 50.0% | |
| !! | ACTGTTGATGGCAAACCTCG+AGG | + | chr3_1:79956659-79956678 | Msa0379060:CDS | 50.0% |
| ACTTACGTAACGATGCCTCG+AGG | - | chr3_1:79956677-79956696 | None:intergenic | 50.0% | |
| !! | TCAACAGGAGTTGATGCTGG+TGG | - | chr3_1:79956875-79956894 | None:intergenic | 50.0% |
| GAGATTATGGAGCTATGGGG+GGG | - | chr3_1:79957203-79957222 | None:intergenic | 50.0% | |
| GGAGATTATGGAGCTATGGG+GGG | - | chr3_1:79957204-79957223 | None:intergenic | 50.0% | |
| !! | TTTTGGGTCGGAGATCCTGT+GGG | - | chr3_1:79957241-79957260 | None:intergenic | 50.0% |
| !!! | CTCGGCTGGTTTGGTTCTTT+TGG | - | chr3_1:79957258-79957277 | None:intergenic | 50.0% |
| AGAACCAAACCAGCCGAGAA+AGG | + | chr3_1:79957260-79957279 | Msa0379060:intron | 50.0% | |
| ! | CTTTCCTTTCTCGGCTGGTT+TGG | - | chr3_1:79957267-79957286 | None:intergenic | 50.0% |
| GTTCAGGGAGAGGTAAGTCT+AGG | - | chr3_1:79957565-79957584 | None:intergenic | 50.0% | |
| !! | CATCTTCCGGTGGTTGATAG+AGG | + | chr3_1:79958137-79958156 | Msa0379060:CDS | 50.0% |
| !! | CTGATTTGGGTGTTGGTGGT+TGG | + | chr3_1:79958215-79958234 | Msa0379060:intron | 50.0% |
| GTGGTTGGAAACAGATGGCA+TGG | + | chr3_1:79958230-79958249 | Msa0379060:intron | 50.0% | |
| GGAAACAGATGGCATGGTAG+TGG | + | chr3_1:79958236-79958255 | Msa0379060:intron | 50.0% | |
| ACATGTGACTCATGCTGCTG+TGG | + | chr3_1:79958275-79958294 | Msa0379060:CDS | 50.0% | |
| TGCTGTGGCTACTGTTAGTC+AGG | + | chr3_1:79958290-79958309 | Msa0379060:CDS | 50.0% | |
| TGTGGCTACTGTTAGTCAGG+TGG | + | chr3_1:79958293-79958312 | Msa0379060:intron | 50.0% | |
| GTGGCTACTGTTAGTCAGGT+GGG | + | chr3_1:79958294-79958313 | Msa0379060:intron | 50.0% | |
| ACATTGCTAGCTGTAGAGGG+GGG | - | chr3_1:79958416-79958435 | None:intergenic | 50.0% | |
| TCTGTTCCTTTGAGTGCGCT+CGG | + | chr3_1:79958746-79958765 | Msa0379060:intron | 50.0% | |
| CATTGCAATTGGCAGTGCAC+GGG | + | chr3_1:79958787-79958806 | Msa0379060:intron | 50.0% | |
| ATGGGGAAATGAGTGCACTG+CGG | - | chr3_1:79958819-79958838 | None:intergenic | 50.0% | |
| CCTAGTACACACAAAGGGGA+TGG | - | chr3_1:79958838-79958857 | None:intergenic | 50.0% | |
| CCATCCCCTTTGTGTGTACT+AGG | + | chr3_1:79958835-79958854 | Msa0379060:intron | 50.0% | |
| GATGCTACATTTGACAGGCC+TGG | - | chr3_1:79958977-79958996 | None:intergenic | 50.0% | |
| CTTCCACCACCTTGATGCAA+AGG | + | chr3_1:79959299-79959318 | Msa0379060:CDS | 50.0% | |
| ATCATTTGGAGGCAAGGCCA+TGG | - | chr3_1:79959338-79959357 | None:intergenic | 50.0% | |
| ! | GGTTCTGATGGAGGAGAAAC+AGG | + | chr3_1:79959472-79959491 | Msa0379060:CDS | 50.0% |
| GTGAGCTTAGCTCAGTTGGT+TGG | - | chr3_1:79960414-79960433 | None:intergenic | 50.0% | |
| !! | GGTGGGATTTTGGGTGTGTT+TGG | - | chr3_1:79960790-79960809 | None:intergenic | 50.0% |
| CACACCCAAAATCCCACCAT+AGG | + | chr3_1:79960792-79960811 | Msa0379060:intron | 50.0% | |
| ACCCAAAATCCCACCATAGG+TGG | + | chr3_1:79960795-79960814 | Msa0379060:intron | 50.0% | |
| CATGACCAAACCACCTATGG+TGG | - | chr3_1:79960808-79960827 | None:intergenic | 50.0% | |
| TCCTACTACCTAGTGGGAAG+TGG | + | chr3_1:79961302-79961321 | Msa0379060:intron | 50.0% | |
| CCTACTACCTAGTGGGAAGT+GGG | + | chr3_1:79961303-79961322 | Msa0379060:intron | 50.0% | |
| GTTCTTTCCCACTTCCCACT+AGG | - | chr3_1:79961313-79961332 | None:intergenic | 50.0% | |
| AGTGGGAAGTGGGAAAGAAC+CGG | + | chr3_1:79961313-79961332 | Msa0379060:intron | 50.0% | |
| GGAAAGAACCGGTGTTTGCT+TGG | + | chr3_1:79961324-79961343 | Msa0379060:intron | 50.0% | |
| TATAACCTCCGTCATGCTCC+GGG | - | chr3_1:79961635-79961654 | None:intergenic | 50.0% | |
| CACAGGAAAGGTTCACGTTC+GGG | + | chr3_1:79962205-79962224 | Msa0379060:CDS | 50.0% | |
| !! | GCATATAGTGGTGTTGCTGC+CGG | + | chr3_1:79962265-79962284 | Msa0379060:CDS | 50.0% |
| AAGGCCTAAGCCAGCAACAA+GGG | - | chr3_1:79962296-79962315 | None:intergenic | 50.0% | |
| AAAGGCCTAAGCCAGCAACA+AGG | - | chr3_1:79962297-79962316 | None:intergenic | 50.0% | |
| GCCTCATCACTTATTTGCCG+AGG | + | chr3_1:79962580-79962599 | Msa0379060:three_prime_UTR | 50.0% | |
| GCCTCGGCAAATAAGTGATG+AGG | - | chr3_1:79962584-79962603 | None:intergenic | 50.0% | |
| CTGACGTGCACGGCTTCTAT+TGG | + | chr3_1:79954344-79954363 | Msa0379060:five_prime_UTR | 55.0% | |
| CCCTAGACAGAAAGGTAGCG+TGG | - | chr3_1:79954436-79954455 | None:intergenic | 55.0% | |
| GCAGACTCAGAGGCTCTTCT+AGG | - | chr3_1:79954625-79954644 | None:intergenic | 55.0% | |
| GCCCTCCAAAAGATGGTGCA+AGG | + | chr3_1:79955972-79955991 | Msa0379060:CDS | 55.0% | |
| CATGGCTGATGTACGTCGAC+AGG | + | chr3_1:79956059-79956078 | Msa0379060:intron | 55.0% | |
| GCACGATGCTACTGCACGTA+TGG | + | chr3_1:79956151-79956170 | Msa0379060:CDS | 55.0% | |
| ATGGAAAGGGCCGCAGAGAA+AGG | + | chr3_1:79956170-79956189 | Msa0379060:CDS | 55.0% | |
| AAAGAGGACTGCTGAGCTGC+AGG | - | chr3_1:79956718-79956737 | None:intergenic | 55.0% | |
| ATGGAGCTATGGGGGGGTTT+AGG | - | chr3_1:79957197-79957216 | None:intergenic | 55.0% | |
| TTTGGGTCGGAGATCCTGTG+GGG | - | chr3_1:79957240-79957259 | None:intergenic | 55.0% | |
| !! | CTTTTGGGTCGGAGATCCTG+TGG | - | chr3_1:79957242-79957261 | None:intergenic | 55.0% |
| TATCTGCGCCCGTCTGACTA+CGG | - | chr3_1:79957305-79957324 | None:intergenic | 55.0% | |
| !! | AGATGGCATGGTAGTGGCTG+TGG | + | chr3_1:79958242-79958261 | Msa0379060:intron | 55.0% |
| GAGGGGGGTTCCATAATTGC+AGG | - | chr3_1:79958401-79958420 | None:intergenic | 55.0% | |
| TTCCTTTGAGTGCGCTCGGT+TGG | + | chr3_1:79958750-79958769 | Msa0379060:intron | 55.0% | |
| AACCAACCGAGCGCACTCAA+AGG | - | chr3_1:79958755-79958774 | None:intergenic | 55.0% | |
| AGGCTGCGGGACATTGCAAT+TGG | + | chr3_1:79958776-79958795 | Msa0379060:intron | 55.0% | |
| ACATTTGACAGGCCTGGCGT+AGG | - | chr3_1:79958971-79958990 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr3_1:79960418-79960437 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr3_1:79960415-79960434 | Msa0379060:intron | 55.0% | |
| CCCACTTCCCACTAGGTAGT+AGG | - | chr3_1:79961306-79961325 | None:intergenic | 55.0% | |
| GTGGACCATGCAAGGACTGT+TGG | + | chr3_1:79961869-79961888 | Msa0379060:CDS | 55.0% | |
| ATGAGGGAACACGTGGTCAC+AGG | + | chr3_1:79962188-79962207 | Msa0379060:CDS | 55.0% | |
| GGAACACGTGGTCACAGGAA+AGG | + | chr3_1:79962193-79962212 | Msa0379060:CDS | 55.0% | |
| GCATGGGCCTCAGCATATAG+TGG | + | chr3_1:79962253-79962272 | Msa0379060:CDS | 55.0% | |
| GAAAGGTAGCGTGGTGTGCG+TGG | - | chr3_1:79954427-79954446 | None:intergenic | 60.0% | |
| AGAGCCTCTGAGTCTGCCGT+CGG | + | chr3_1:79954628-79954647 | Msa0379060:CDS | 60.0% | |
| TCTTCCGACGGCAGACTCAG+AGG | - | chr3_1:79954635-79954654 | None:intergenic | 60.0% | |
| TCTGAGTCTGCCGTCGGAAG+AGG | + | chr3_1:79954634-79954653 | Msa0379060:CDS | 60.0% | |
| ACGAGGTCCTCCTCTTCCGA+CGG | - | chr3_1:79954647-79954666 | None:intergenic | 60.0% | |
| TTGGGTCGGAGATCCTGTGG+GGG | - | chr3_1:79957239-79957258 | None:intergenic | 60.0% | |
| GCAGGCTGACCGTAGTCAGA+CGG | + | chr3_1:79957293-79957312 | Msa0379060:intron | 60.0% | |
| CAGGCTGACCGTAGTCAGAC+GGG | + | chr3_1:79957294-79957313 | Msa0379060:intron | 60.0% | |
| ! | TGAGTGCGCTCGGTTGGTTG+AGG | + | chr3_1:79958756-79958775 | Msa0379060:intron | 60.0% |
| AAGGTCCGGGGTTCAAACCC+CGG | - | chr3_1:79960372-79960391 | None:intergenic | 60.0% | |
| AGATACCCGGAGCATGACGG+AGG | + | chr3_1:79961627-79961646 | Msa0379060:intron | 60.0% | |
| CAGTGATCTTGCCGCAGCTG+TGG | + | chr3_1:79961850-79961869 | Msa0379060:CDS | 60.0% | |
| CCTTGCATGGTCCACAGCTG+CGG | - | chr3_1:79961864-79961883 | None:intergenic | 60.0% | |
| !! | GCTGCCCTTGTTGCTGGCTT+AGG | + | chr3_1:79962289-79962308 | Msa0379060:CDS | 60.0% |
| ACGACCGGCGAAGGGGAAAG+AGG | - | chr3_1:79954491-79954510 | None:intergenic | 65.0% | |
| CTTTCCCCTTCGCCGGTCGT+CGG | + | chr3_1:79954491-79954510 | Msa0379060:five_prime_UTR | 65.0% | |
| GGATTCCGGTCACCGACGAC+CGG | - | chr3_1:79954506-79954525 | None:intergenic | 65.0% | |
| GAGTCTGCCGTCGGAAGAGG+AGG | + | chr3_1:79954637-79954656 | Msa0379060:CDS | 65.0% | |
| CTTGTCGTCGGATGGCTGCC+CGG | + | chr3_1:79955661-79955680 | Msa0379060:CDS | 65.0% | |
| ! | CGCTCGGTTGGTTGAGGCTG+CGG | + | chr3_1:79958762-79958781 | Msa0379060:intron | 65.0% |
| ! | GCTCGGTTGGTTGAGGCTGC+GGG | + | chr3_1:79958763-79958782 | Msa0379060:intron | 65.0% |
| AGTGGCCGGGGTTTGAACCC+CGG | + | chr3_1:79960364-79960383 | Msa0379060:intron | 65.0% | |
| CCGCAGCTGTGGACCATGCA+AGG | + | chr3_1:79961861-79961880 | Msa0379060:CDS | 65.0% | |
| GCCAGCAACAAGGGCAGCTC+CGG | - | chr3_1:79962287-79962306 | None:intergenic | 65.0% | |
| GTCACCGACGACCGGCGAAG+GGG | - | chr3_1:79954498-79954517 | None:intergenic | 70.0% | |
| GGTCACCGACGACCGGCGAA+GGG | - | chr3_1:79954499-79954518 | None:intergenic | 70.0% | |
| CTTCGCCGGTCGTCGGTGAC+CGG | + | chr3_1:79954498-79954517 | Msa0379060:five_prime_UTR | 70.0% | |
| TCGTCGGATGGCTGCCCGGA+GGG | + | chr3_1:79955665-79955684 | Msa0379060:CDS | 70.0% | |
| GCCGGAGCTGCCCTTGTTGC+TGG | + | chr3_1:79962283-79962302 | Msa0379060:CDS | 70.0% | |
| CGGTCACCGACGACCGGCGA+AGG | - | chr3_1:79954500-79954519 | None:intergenic | 75.0% | |
| GTCGTCGGATGGCTGCCCGG+AGG | + | chr3_1:79955664-79955683 | Msa0379060:CDS | 75.0% | |
| TCGGATGGCTGCCCGGAGGG+TGG | + | chr3_1:79955668-79955687 | Msa0379060:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 79954232 | 79962766 | 79954232 | ID=Msa0379060;Name=Msa0379060 |
| chr3_1 | mRNA | 79954232 | 79962766 | 79954232 | ID=Msa0379060-mRNA-1;Parent=Msa0379060;Name=Msa0379060-mRNA-1;_AED=0.14;_eAED=0.14;_QI=363|1|1|1|1|1|14|427|528 |
| chr3_1 | exon | 79954232 | 79954692 | 79954232 | ID=Msa0379060-mRNA-1:exon:19827;Parent=Msa0379060-mRNA-1 |
| chr3_1 | exon | 79955578 | 79955746 | 79955578 | ID=Msa0379060-mRNA-1:exon:19828;Parent=Msa0379060-mRNA-1 |
| chr3_1 | exon | 79955861 | 79955993 | 79955861 | ID=Msa0379060-mRNA-1:exon:19829;Parent=Msa0379060-mRNA-1 |
| chr3_1 | exon | 79956081 | 79956251 | 79956081 | ID=Msa0379060-mRNA-1:exon:19830;Parent=Msa0379060-mRNA-1 |
| chr3_1 | exon | 79956381 | 79956462 | 79956381 | ID=Msa0379060-mRNA-1:exon:19831;Parent=Msa0379060-mRNA-1 |
| chr3_1 | exon | 79956577 | 79956690 | 79956577 | ID=Msa0379060-mRNA-1:exon:19832;Parent=Msa0379060-mRNA-1 |
| chr3_1 | exon | 79956832 | 79956898 | 79956832 | ID=Msa0379060-mRNA-1:exon:19833;Parent=Msa0379060-mRNA-1 |
| chr3_1 | exon | 79958053 | 79958158 | 79958053 | ID=Msa0379060-mRNA-1:exon:19834;Parent=Msa0379060-mRNA-1 |
| chr3_1 | exon | 79958244 | 79958311 | 79958244 | ID=Msa0379060-mRNA-1:exon:19835;Parent=Msa0379060-mRNA-1 |
| chr3_1 | exon | 79959283 | 79959377 | 79959283 | ID=Msa0379060-mRNA-1:exon:19836;Parent=Msa0379060-mRNA-1 |
| chr3_1 | exon | 79959453 | 79959586 | 79959453 | ID=Msa0379060-mRNA-1:exon:19837;Parent=Msa0379060-mRNA-1 |
| chr3_1 | exon | 79961629 | 79961714 | 79961629 | ID=Msa0379060-mRNA-1:exon:19838;Parent=Msa0379060-mRNA-1 |
| chr3_1 | exon | 79961809 | 79961898 | 79961809 | ID=Msa0379060-mRNA-1:exon:19839;Parent=Msa0379060-mRNA-1 |
| chr3_1 | exon | 79962166 | 79962766 | 79962166 | ID=Msa0379060-mRNA-1:exon:19840;Parent=Msa0379060-mRNA-1 |
| chr3_1 | five_prime_UTR | 79954232 | 79954594 | 79954232 | ID=Msa0379060-mRNA-1:five_prime_utr;Parent=Msa0379060-mRNA-1 |
| chr3_1 | CDS | 79954595 | 79954692 | 79954595 | ID=Msa0379060-mRNA-1:cds;Parent=Msa0379060-mRNA-1 |
| chr3_1 | CDS | 79955578 | 79955746 | 79955578 | ID=Msa0379060-mRNA-1:cds;Parent=Msa0379060-mRNA-1 |
| chr3_1 | CDS | 79955861 | 79955993 | 79955861 | ID=Msa0379060-mRNA-1:cds;Parent=Msa0379060-mRNA-1 |
| chr3_1 | CDS | 79956081 | 79956251 | 79956081 | ID=Msa0379060-mRNA-1:cds;Parent=Msa0379060-mRNA-1 |
| chr3_1 | CDS | 79956381 | 79956462 | 79956381 | ID=Msa0379060-mRNA-1:cds;Parent=Msa0379060-mRNA-1 |
| chr3_1 | CDS | 79956577 | 79956690 | 79956577 | ID=Msa0379060-mRNA-1:cds;Parent=Msa0379060-mRNA-1 |
| chr3_1 | CDS | 79956832 | 79956898 | 79956832 | ID=Msa0379060-mRNA-1:cds;Parent=Msa0379060-mRNA-1 |
| chr3_1 | CDS | 79958053 | 79958158 | 79958053 | ID=Msa0379060-mRNA-1:cds;Parent=Msa0379060-mRNA-1 |
| chr3_1 | CDS | 79958244 | 79958311 | 79958244 | ID=Msa0379060-mRNA-1:cds;Parent=Msa0379060-mRNA-1 |
| chr3_1 | CDS | 79959283 | 79959377 | 79959283 | ID=Msa0379060-mRNA-1:cds;Parent=Msa0379060-mRNA-1 |
| chr3_1 | CDS | 79959453 | 79959586 | 79959453 | ID=Msa0379060-mRNA-1:cds;Parent=Msa0379060-mRNA-1 |
| chr3_1 | CDS | 79961629 | 79961714 | 79961629 | ID=Msa0379060-mRNA-1:cds;Parent=Msa0379060-mRNA-1 |
| chr3_1 | CDS | 79961809 | 79961898 | 79961809 | ID=Msa0379060-mRNA-1:cds;Parent=Msa0379060-mRNA-1 |
| chr3_1 | CDS | 79962166 | 79962339 | 79962166 | ID=Msa0379060-mRNA-1:cds;Parent=Msa0379060-mRNA-1 |
| chr3_1 | three_prime_UTR | 79962340 | 79962766 | 79962340 | ID=Msa0379060-mRNA-1:three_prime_utr;Parent=Msa0379060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
