AlfalfaGEDB | Msa0324890

M. sativa cultivar zhongmu-4 / Msa0324890

KEGG: -
GO: -
PFAM: PF02892.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0324890	XP_024632581.1	98.559	902	12	1	1	902	1	901	0.0	1868

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0071090	Msa0324890	0.801437	9.010168e-49	-8.615850e-47
Msa0119090	Msa0324890	0.822981	1.770967e-53	-8.615850e-47
Msa0124320	Msa0324890	0.811356	7.293834e-51	-8.615850e-47
Msa0162430	Msa0324890	0.807554	4.776758e-50	-8.615850e-47
Msa0171200	Msa0324890	0.809216	2.111209e-50	-8.615850e-47
Msa0204250	Msa0324890	0.829379	5.320722e-55	-8.615850e-47
Msa0206330	Msa0324890	0.830160	3.434409e-55	-8.615850e-47
Msa0218460	Msa0324890	0.806791	6.928426e-50	-8.615850e-47
Msa0220730	Msa0324890	0.802245	6.147432e-49	-8.615850e-47
Msa0247400	Msa0324890	0.835230	1.893473e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0324890	MtrunA17_Chr2g0302451	98.559	902	12	1	1	902	1	901	0.0	1868
Msa0324890	MtrunA17_Chr3g0112101	31.564	716	462	11	120	819	4	707	8.91e-111	358
Msa0324890	MtrunA17_Chr3g0126261	33.603	494	322	6	309	800	22	511	7.03e-91	299
Msa0324890	MtrunA17_Chr6g0454061	35.603	514	312	6	300	807	69	569	9.44e-88	292
Msa0324890	MtrunA17_Chr6g0455641	33.865	502	324	5	300	798	68	564	1.12e-87	292
Msa0324890	MtrunA17_Chr6g0454051	34.047	514	320	6	300	807	124	624	1.36e-82	280
Msa0324890	MtrunA17_Chr6g0454041	31.066	647	375	13	149	791	85	664	2.59e-79	272
Msa0324890	MtrunA17_Chr6g0476101	36.330	267	169	1	423	689	17	282	8.13e-54	189
Msa0324890	MtrunA17_Chr4g0010371	30.303	99	68	1	668	765	2	100	3.59e-12	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0324890	AT3G17450.2	56.331	845	337	12	1	829	1	829	0.0	969
Msa0324890	AT3G17450.1	56.331	845	337	12	1	829	1	829	0.0	969
Msa0324890	AT4G15020.2	33.381	701	419	16	114	791	1	676	2.58e-105	344
Msa0324890	AT4G15020.1	33.381	701	419	16	114	791	1	676	2.58e-105	344
Msa0324890	AT3G22220.3	31.844	716	458	18	114	819	1	696	3.84e-103	338
Msa0324890	AT3G22220.4	31.844	716	458	18	114	819	1	696	3.84e-103	338
Msa0324890	AT3G22220.2	31.844	716	458	18	114	819	1	696	3.84e-103	338
Msa0324890	AT3G22220.1	31.844	716	458	18	114	819	1	696	3.84e-103	338
Msa0324890	AT1G79740.1	29.550	511	346	6	309	819	111	607	2.35e-77	265
Msa0324890	AT1G79740.4	29.550	511	346	6	309	819	111	607	2.35e-77	265

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Find 218 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACATAGGCAACCCGA+GGG	0.683630	2_4:+30856604	Msa0324890:CDS
AAAAGCGACCCGAAATAAGT+TGG	0.544977	2_4:-30857047	None:intergenic
AAAATCAAGATGGTCGTCAT+CGG	0.592207	2_4:+30860081	Msa0324890:three_prime_UTR
AAAATGAAGGAAAATCTGGA+AGG	0.590836	2_4:+30856202	Msa0324890:CDS
AAACAAAATCTTGACGATAT+CGG	0.369198	2_4:-30858097	None:intergenic
AAACAACTAAAGGTTAAGAC+AGG	0.582514	2_4:+30856871	Msa0324890:CDS
AAAGGAAAGCAATTGATGGA+TGG	0.603413	2_4:+30856328	Msa0324890:CDS
AAAGGAGAAGGAATTTGTTC+TGG	0.322409	2_4:+30857487	Msa0324890:CDS
AAATAAAAGAGAATATGAAA+TGG	0.513526	2_4:+30856569	Msa0324890:CDS
AAATGAAGGAAAATCTGGAA+GGG	0.618504	2_4:+30856203	Msa0324890:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAACAATGTTGATATTGCT+AGG	+	chr2_4:30854680-30854699	Msa0324890:intron	30.0%
CAAAAGATTGGAATTGACAT+AGG	+	chr2_4:30855184-30855203	Msa0324890:intron	30.0%
GATTGATGTAATGTGGAATT+AGG	+	chr2_4:30855475-30855494	Msa0324890:intron	30.0%
CAGTATTCTGACAAAAATCA+AGG	-	chr2_4:30855642-30855661	None:intergenic	30.0%
TGAAGTAACATACTGTGAAA+AGG	+	chr2_4:30856159-30856178	Msa0324890:CDS	30.0%
CCTAAAAATGAAGGAAAATC+TGG	+	chr2_4:30856198-30856217	Msa0324890:CDS	30.0%
AAAATGAAGGAAAATCTGGA+AGG	+	chr2_4:30856202-30856221	Msa0324890:CDS	30.0%
AAATGAAGGAAAATCTGGAA+GGG	+	chr2_4:30856203-30856222	Msa0324890:CDS	30.0%
CTGTAAATTTAACTCCTCTT+CGG	+	chr2_4:30856362-30856381	Msa0324890:CDS	30.0%
GATTTAAACAACATTTGGCT+AGG	+	chr2_4:30856494-30856513	Msa0324890:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	30854238	30860314	30854238	ID=Msa0324890;Name=Msa0324890
chr2_4	mRNA	30854238	30860314	30854238	ID=Msa0324890-mRNA-1;Parent=Msa0324890;Name=Msa0324890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=200\|1\|1\|1\|0.71\|0.62\|8\|313\|902
chr2_4	exon	30854238	30854348	30854238	ID=Msa0324890-mRNA-1:exon:10311;Parent=Msa0324890-mRNA-1
chr2_4	exon	30854370	30854427	30854370	ID=Msa0324890-mRNA-1:exon:10312;Parent=Msa0324890-mRNA-1
chr2_4	exon	30855973	30857326	30855973	ID=Msa0324890-mRNA-1:exon:10313;Parent=Msa0324890-mRNA-1
chr2_4	exon	30857435	30858121	30857435	ID=Msa0324890-mRNA-1:exon:10314;Parent=Msa0324890-mRNA-1
chr2_4	exon	30858211	30858294	30858211	ID=Msa0324890-mRNA-1:exon:10315;Parent=Msa0324890-mRNA-1
chr2_4	exon	30858383	30858458	30858383	ID=Msa0324890-mRNA-1:exon:10316;Parent=Msa0324890-mRNA-1
chr2_4	exon	30858561	30858883	30858561	ID=Msa0324890-mRNA-1:exon:10317;Parent=Msa0324890-mRNA-1
chr2_4	exon	30859786	30860314	30859786	ID=Msa0324890-mRNA-1:exon:10318;Parent=Msa0324890-mRNA-1
chr2_4	five_prime_UTR	30854238	30854348	30854238	ID=Msa0324890-mRNA-1:five_prime_utr;Parent=Msa0324890-mRNA-1
chr2_4	five_prime_UTR	30854370	30854427	30854370	ID=Msa0324890-mRNA-1:five_prime_utr;Parent=Msa0324890-mRNA-1
chr2_4	five_prime_UTR	30855973	30856003	30855973	ID=Msa0324890-mRNA-1:five_prime_utr;Parent=Msa0324890-mRNA-1
chr2_4	CDS	30856004	30857326	30856004	ID=Msa0324890-mRNA-1:cds;Parent=Msa0324890-mRNA-1
chr2_4	CDS	30857435	30858121	30857435	ID=Msa0324890-mRNA-1:cds;Parent=Msa0324890-mRNA-1
chr2_4	CDS	30858211	30858294	30858211	ID=Msa0324890-mRNA-1:cds;Parent=Msa0324890-mRNA-1
chr2_4	CDS	30858383	30858458	30858383	ID=Msa0324890-mRNA-1:cds;Parent=Msa0324890-mRNA-1
chr2_4	CDS	30858561	30858883	30858561	ID=Msa0324890-mRNA-1:cds;Parent=Msa0324890-mRNA-1
chr2_4	CDS	30859786	30860001	30859786	ID=Msa0324890-mRNA-1:cds;Parent=Msa0324890-mRNA-1
chr2_4	three_prime_UTR	30860002	30860314	30860002	ID=Msa0324890-mRNA-1:three_prime_utr;Parent=Msa0324890-mRNA-1

Gene Sequence

>Msa0324890

ATGGCTCCAATACGCTCCACAGGATTTGTTGATCCTGGTTGGGATCATGGCATTGCTCAAGATGAGCGGAAAAAGAAGGTTAGATGCAATTACTGTGGGAAAGTTGTTAGTGGTGGGATATACAGATTAAAGCAGCATTTAGCCCGAGTTTCTGGTGAAGTAACATACTGTGAAAAGGCTCCGGAGGAAGTCTACCTAAAAATGAAGGAAAATCTGGAAGGGTGTCGTTCAAATAAGAAACAAAAGCAAGTTGATGCACAAGCATATATGAATTTTCAGTCTAATGATGATGAAGACGATGAAGAGCAAGTTGGGTGTAGAAGCAAAGGAAAGCAATTGATGGATGGCAGGAATGTATCTGTAAATTTAACTCCTCTTCGGTCCTTAGGATATGTTGACCCAGGGTGGGAACACGGTGTTGCTCAGGATGAGAGAAAGAAAAAAGTCAAATGCAGTTACTGTGAGAAAGTTGTTAGTGGCGGTATTAATAGATTTAAACAACATTTGGCTAGGATTCCGGGAGAGGTAGCACCTTGTAAAAGTGCTCCAGAAGAAGTTTATCTTAAAATAAAAGAGAATATGAAATGGCATCGCACTGGAAAAAGACATAGGCAACCCGAGGGTAAGGATCTGATGCCTTTCTATCCAAAGTCTGATAATGAAGATGACGAGTATGAGCAGCAGGAAGATACTTTGCATCATATGAACAAGGAAGCTTTGATTGATAATGATAGGAGATACTGTAAAGATACAGGAAAGACCTTTAAGGGAATGTCCTCTAATACTAGCCCAGAACCAGCGTTGAGAAGATCAAGATTAGATAGTTTTTACTTGAAACATCCCACAAATCAGAATCTTCAAACTTGCAAACAACTAAAGGTTAAGACAGGACCCACTAAGAAATTACGCAAGGAACTTTTTTCTTCTATTTGCAAGTTCTTTTGCCACGCAGGAATTCCTTTACAAGCTGCAGACTCCGTATATTTTCATAAAATGCTGGAATTGGCTGGTCAATATGGACAAGGACTGGCATGCCCATCCAGCCAACTTATTTCGGGTCGCTTTTTGCAGGAGGAAATCAATTCCATTAAGAATTATCTTGCTGAATATAAGGCTTCCTGGGCAATCACTGGTTGTTCGATAATGGCTGATAGTTGGAGAGATGCACAGGGTAGGACAATTATTAACTTTCTTGTTTCATCTCCTCATGGTGTATACTTTGTTTCTTCAGTAGATGCCACTAATGTAGTTGAAGATGCAACATATTTATTTAAGCTTTTGGACAAAGTAGTGGAAGAAATAGGTGAAGAAAATGTAGTGCAGGTAATAACTGAAAATACTCCTAACTATAAAGCTGCTGGGAAAATGCTTGAAGAAAGGAGAAGGAATTTGTTCTGGACACCTTGTGCTATCTATTGTATTAATCAAGTGCTTGAAGATTTTCTGAAGATTAGATGTGTAGAAGAGTGCATGGAAAAGGGCCAGAAAATTACAAAACTAATATACAATCAAATATGGTTGTTAAATCTTATGAAAAGTGAATTTACCCATGGGAATGAGCTTCTAAAGCCAGCTGGCACCCAGTGTGCTTCTAGCTTTGCTACATTGCAGAATTTGTTGGATCATCGAGTTAGTCTCAGAAGAATGTTTCTTTCAAACAAATGGATGTCATCCAGGTTCTCCAGTTCAAGCCAGGGGAAAGAGGTGCAAAAAATTGTTTTGAATGTCACATTTTGGAAGAAAATGCAGTATGTGAGGAATTCAGTATATCCCATATTGCAAGTGTTTCAAAAGGTGTCTAGTGGTGAGAGCTTGTCAATGCCATATGTATATAACGACTTGTACAGGGCAAAACTTGCAATCAAATCTATTCATGGCGATGATGCACGGAAATATGAGCCATTCTGGAAGGTGATAGACAGGCACTGTAACTCTCTTTTTTGTCATCCTCTTTACTTGGCTGCTTACTTCTTGAATCCGTCATACCGATATCGTCAAGATTTTGTTTCGCATTCTGATGTAGTACGTGGTCTGAATGAATGCATTGTTCGGCTAGAACTAGATAATATGAGACGAATATCTGCATCAATGCAAATTCCTCATTATAATTCAGCTCAAGATGACTTTGGAACTGAATTGGCAATTAGCACAAGAACAGGTCTTGAACCAGCTGCTTGGTGGCAACAACATGGAATAAGTTGCTTGGAGTTGCAAAGAATAGCCGTTCGCATATTAAGTCAGACATGCTCATCTTTTGCATGTGAGCATGATGGGAGCATGTATGATCAGATATATAGCAAAAGAAAAAATCGCCTATCACAGAAGAAAGTTAATGACATTATGTACGTTCACTACAACTTGCGACTTAGAGAATGCCAAGTAAGAAAAAGGTCTAGGGAGTCGAAGTCAACCTCTGCTGAGAATGTTCTACAAGAGCACTTACTTGCTGACTGGATAGTTGATACCACTGCACAAAGCTCTGATGGTGACAAGAATATCCCTTTTGGTGTTGATCTAGATGACTATGAATATGAAAATGATTCAATAGACTATGATGATGGATCTGAAAGGCATCTAAAGGGTTCCCATGAGCTGGTTACTATGGCTGATGGAGCAGTAGGATCTTCAGATGCAGATCATGCTAACATTGATGGTGCCAGTGACGATGAGTCGGATCTGAATTATTTTGATGATGATATGAGTGAGTAA

Protein sequence

>Msa0324890

MAPIRSTGFVDPGWDHGIAQDERKKKVRCNYCGKVVSGGIYRLKQHLARVSGEVTYCEKAPEEVYLKMKENLEGCRSNKKQKQVDAQAYMNFQSNDDEDDEEQVGCRSKGKQLMDGRNVSVNLTPLRSLGYVDPGWEHGVAQDERKKKVKCSYCEKVVSGGINRFKQHLARIPGEVAPCKSAPEEVYLKIKENMKWHRTGKRHRQPEGKDLMPFYPKSDNEDDEYEQQEDTLHHMNKEALIDNDRRYCKDTGKTFKGMSSNTSPEPALRRSRLDSFYLKHPTNQNLQTCKQLKVKTGPTKKLRKELFSSICKFFCHAGIPLQAADSVYFHKMLELAGQYGQGLACPSSQLISGRFLQEEINSIKNYLAEYKASWAITGCSIMADSWRDAQGRTIINFLVSSPHGVYFVSSVDATNVVEDATYLFKLLDKVVEEIGEENVVQVITENTPNYKAAGKMLEERRRNLFWTPCAIYCINQVLEDFLKIRCVEECMEKGQKITKLIYNQIWLLNLMKSEFTHGNELLKPAGTQCASSFATLQNLLDHRVSLRRMFLSNKWMSSRFSSSSQGKEVQKIVLNVTFWKKMQYVRNSVYPILQVFQKVSSGESLSMPYVYNDLYRAKLAIKSIHGDDARKYEPFWKVIDRHCNSLFCHPLYLAAYFLNPSYRYRQDFVSHSDVVRGLNECIVRLELDNMRRISASMQIPHYNSAQDDFGTELAISTRTGLEPAAWWQQHGISCLELQRIAVRILSQTCSSFACEHDGSMYDQIYSKRKNRLSQKKVNDIMYVHYNLRLRECQVRKRSRESKSTSAENVLQEHLLADWIVDTTAQSSDGDKNIPFGVDLDDYEYENDSIDYDDGSERHLKGSHELVTMADGAVGSSDADHANIDGASDDESDLNYFDDDMSE*