Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382220 | XP_003603241.2 | 98.754 | 562 | 7 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382220 | sp|Q67ZE1|HSDD2_ARATH | 68.694 | 559 | 173 | 1 | 2 | 560 | 5 | 561 | 0.0 | 820 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382220 | G7J951 | 98.754 | 562 | 7 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1148 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046840 | Msa0382220 | 0.991103 | 6.585294e-186 | -8.615850e-47 |
| Msa0382220 | Msa0605530 | 0.801799 | 7.591769e-49 | -8.615850e-47 |
| Msa0382220 | Msa0687370 | 0.809192 | 2.136289e-50 | -8.615850e-47 |
| Msa0382220 | Msa1050260 | 0.820822 | 5.597334e-53 | -8.615850e-47 |
| Msa0382220 | Msa1435110 | 0.940414 | 2.431687e-100 | -8.615850e-47 |
| Msa0382220 | Msa1439740 | 0.934069 | 7.141917e-96 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382220 | MtrunA17_Chr3g0136511 | 98.754 | 562 | 7 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1148 |
| Msa0382220 | MtrunA17_Chr4g0033711 | 42.453 | 530 | 290 | 7 | 9 | 537 | 16 | 531 | 8.27e-132 | 396 |
| Msa0382220 | MtrunA17_Chr1g0157471 | 33.681 | 383 | 219 | 11 | 10 | 372 | 15 | 382 | 2.86e-47 | 172 |
| Msa0382220 | MtrunA17_Chr3g0133771 | 27.011 | 348 | 219 | 13 | 10 | 352 | 5 | 322 | 6.25e-20 | 91.3 |
| Msa0382220 | MtrunA17_Chr2g0314601 | 30.204 | 245 | 146 | 9 | 1 | 231 | 1 | 234 | 4.49e-16 | 81.6 |
| Msa0382220 | MtrunA17_Chr8g0359401 | 29.388 | 245 | 148 | 9 | 1 | 231 | 1 | 234 | 1.46e-15 | 80.1 |
| Msa0382220 | MtrunA17_Chr8g0348131 | 33.333 | 177 | 96 | 5 | 368 | 535 | 65 | 228 | 2.19e-13 | 70.5 |
| Msa0382220 | MtrunA17_Chr4g0005701 | 30.319 | 188 | 115 | 4 | 378 | 558 | 18 | 196 | 2.48e-12 | 66.2 |
| Msa0382220 | MtrunA17_Chr8g0387631 | 30.851 | 188 | 103 | 5 | 378 | 556 | 69 | 238 | 3.01e-12 | 67.0 |
| Msa0382220 | MtrunA17_Chr5g0423551 | 27.686 | 242 | 146 | 9 | 11 | 235 | 6 | 235 | 1.78e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382220 | AT2G26260.1 | 68.694 | 559 | 173 | 1 | 2 | 560 | 5 | 561 | 0.0 | 820 |
| Msa0382220 | AT2G26260.2 | 69.280 | 472 | 143 | 1 | 89 | 560 | 1 | 470 | 0.0 | 696 |
| Msa0382220 | AT1G47290.2 | 67.114 | 447 | 127 | 3 | 6 | 449 | 9 | 438 | 0.0 | 635 |
| Msa0382220 | AT1G47290.1 | 74.176 | 364 | 94 | 0 | 6 | 369 | 9 | 372 | 0.0 | 593 |
| Msa0382220 | AT2G43420.1 | 40.614 | 554 | 311 | 7 | 9 | 555 | 15 | 557 | 8.42e-138 | 411 |
| Msa0382220 | AT2G33630.1 | 31.759 | 381 | 227 | 9 | 10 | 372 | 15 | 380 | 9.57e-43 | 160 |
| Msa0382220 | AT4G33360.1 | 26.503 | 366 | 211 | 15 | 10 | 360 | 16 | 338 | 1.41e-17 | 84.7 |
| Msa0382220 | AT4G33360.3 | 26.039 | 361 | 212 | 14 | 10 | 355 | 4 | 324 | 2.21e-17 | 84.0 |
| Msa0382220 | AT1G53500.1 | 29.661 | 236 | 141 | 9 | 10 | 231 | 12 | 236 | 2.70e-15 | 79.7 |
| Msa0382220 | AT3G14790.2 | 29.388 | 245 | 148 | 9 | 1 | 231 | 4 | 237 | 5.30e-15 | 78.6 |
| Msa0382220 | AT3G14790.1 | 29.388 | 245 | 148 | 9 | 1 | 231 | 1 | 234 | 6.62e-15 | 78.2 |
| Msa0382220 | AT4G33360.2 | 25.767 | 326 | 188 | 13 | 5 | 315 | 11 | 297 | 6.29e-13 | 70.1 |
| Msa0382220 | AT4G11220.1 | 29.255 | 188 | 106 | 5 | 378 | 556 | 80 | 249 | 3.67e-12 | 67.4 |
| Msa0382220 | AT3G61560.1 | 30.622 | 209 | 119 | 7 | 367 | 552 | 38 | 243 | 2.35e-11 | 64.7 |
| Msa0382220 | AT3G61560.2 | 30.622 | 209 | 119 | 7 | 367 | 552 | 38 | 243 | 2.35e-11 | 64.7 |
Find 181 sgRNAs with CRISPR-Local
Find 417 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTGCAGAAGGGAATAAT+TGG | 0.171596 | 3_1:-84701331 | Msa0382220:CDS |
| CTTTGAAGTAACAAACTTCT+TGG | 0.203034 | 3_1:+84700921 | None:intergenic |
| CGTCCTACCTTCTCTACTTT+CGG | 0.230913 | 3_1:-84706411 | Msa0382220:intron |
| GGCATATTTCATTACGAATA+TGG | 0.231821 | 3_1:-84704290 | Msa0382220:CDS |
| TCTGCTCGTTCTTAGCTTCC+TGG | 0.240047 | 3_1:-84701183 | Msa0382220:CDS |
| CACCAATCACATCCCATATA+AGG | 0.242796 | 3_1:+84700555 | None:intergenic |
| ATGAACTCCCAAAACTTTAT+AGG | 0.247483 | 3_1:+84704265 | None:intergenic |
| GGTTTGCCGATGCCCTTATA+TGG | 0.252412 | 3_1:-84700568 | Msa0382220:three_prime_UTR |
| GGAGTTCATGTCTCTAATTT+TGG | 0.253874 | 3_1:-84704251 | Msa0382220:CDS |
| TTCCAGACTGCATTTGATTA+TGG | 0.254715 | 3_1:-84706357 | Msa0382220:exon |
| AACAAACCTCAACTCTTAAA+AGG | 0.261492 | 3_1:-84706125 | Msa0382220:intron |
| TATGACCCATGTCATGTTAC+AGG | 0.265492 | 3_1:+84700406 | None:intergenic |
| GTCCTACCTTCTCTACTTTC+GGG | 0.300281 | 3_1:-84706410 | Msa0382220:intron |
| ATATGGAACCTATAAAGTTT+TGG | 0.301633 | 3_1:-84704273 | Msa0382220:CDS |
| CTTTCTCAGTTGCCTCATCT+TGG | 0.333806 | 3_1:-84701379 | Msa0382220:CDS |
| CTGTGTCCGCATCGCCGATT+TGG | 0.334227 | 3_1:-84706243 | Msa0382220:CDS |
| GGATTGGTTATTAAGGCTAA+TGG | 0.351234 | 3_1:-84705495 | Msa0382220:CDS |
| GGGTGAGGGATTGGTTATTA+AGG | 0.352725 | 3_1:-84705502 | Msa0382220:CDS |
| ATGTGATTGGTGATTATCTT+TGG | 0.355141 | 3_1:-84700544 | Msa0382220:three_prime_UTR |
| CTTGAACCCTCTGAGCAATT+AGG | 0.355569 | 3_1:-84706206 | Msa0382220:CDS |
| TAGTTGTTTAAAGAAGAATT+TGG | 0.361224 | 3_1:+84705990 | None:intergenic |
| TTCTCTTACCAGTTCATTGT+TGG | 0.367722 | 3_1:-84705079 | Msa0382220:intron |
| TATCATGCCAATTGCACATT+TGG | 0.370214 | 3_1:-84703164 | Msa0382220:CDS |
| ACCTGGGAAGCTATTTAGAT+TGG | 0.370608 | 3_1:-84700628 | Msa0382220:three_prime_UTR |
| GACGGTTCCATCACCATTTA+CGG | 0.371919 | 3_1:-84706530 | Msa0382220:five_prime_UTR |
| CTTAAGAACTTGTATACTAT+AGG | 0.373557 | 3_1:-84701149 | Msa0382220:intron |
| AGAGATATCGCAGCCGTAAA+TGG | 0.375439 | 3_1:+84706517 | None:intergenic |
| ACTCCTATCGGGAATTTAAT+CGG | 0.378975 | 3_1:-84700589 | Msa0382220:three_prime_UTR |
| TTAATCTCTGCAGCATTTGA+AGG | 0.382000 | 3_1:-84706041 | Msa0382220:intron |
| TCGATCGGTTTATTCATTCA+TGG | 0.385542 | 3_1:-84701809 | Msa0382220:CDS |
| GGAATTCATGGAATTCATAA+TGG | 0.386447 | 3_1:-84705778 | Msa0382220:CDS |
| TTACTTCAAAGATTGATTGA+TGG | 0.390041 | 3_1:-84700909 | Msa0382220:exon |
| TGCTTCACCTTCAACATTGA+CGG | 0.391665 | 3_1:+84705953 | None:intergenic |
| TATAGGCTGCTTGGCCCATA+TGG | 0.393052 | 3_1:-84703130 | Msa0382220:CDS |
| TCCAAAGCTTCTGTATATCT+TGG | 0.393295 | 3_1:-84702549 | Msa0382220:CDS |
| TTAAAATTTGTCACTCCTAT+CGG | 0.395432 | 3_1:-84700601 | Msa0382220:three_prime_UTR |
| CAATAATTGTACAATGATAC+AGG | 0.395876 | 3_1:+84700806 | None:intergenic |
| TCCAAGATATACAGAAGCTT+TGG | 0.397177 | 3_1:+84702548 | None:intergenic |
| CACTCCACCAAATGTGCAAT+TGG | 0.401026 | 3_1:+84703157 | None:intergenic |
| TGAGGCACCTTCATTCCATA+TGG | 0.412154 | 3_1:+84703115 | None:intergenic |
| GATGTGAGTCTTATTCTTGA+AGG | 0.416433 | 3_1:+84703085 | None:intergenic |
| CATCATTCCGTCAATGTTGA+AGG | 0.420093 | 3_1:-84705960 | Msa0382220:intron |
| CATGCCAATTGCACATTTGG+TGG | 0.425591 | 3_1:-84703161 | Msa0382220:CDS |
| TGTGTCCGCATCGCCGATTT+GGG | 0.426692 | 3_1:-84706242 | Msa0382220:CDS |
| TAAACTGTTGGTGCCTTCAT+TGG | 0.429069 | 3_1:-84705415 | Msa0382220:CDS |
| TCTGAGCAATTAGGTCTTCT+CGG | 0.432974 | 3_1:-84706197 | Msa0382220:CDS |
| ACCAATCACATCCCATATAA+GGG | 0.435378 | 3_1:+84700556 | None:intergenic |
| GATTGGTTATTAAGGCTAAT+GGG | 0.435448 | 3_1:-84705494 | Msa0382220:CDS |
| AAGAATTTGGAGCAGCCATA+TGG | 0.438027 | 3_1:+84706003 | None:intergenic |
| TTGGTTGATGCTGCAAAGGC+AGG | 0.438220 | 3_1:-84705396 | Msa0382220:CDS |
| CTCAGAGGGTTCAAGTTCAA+TGG | 0.441397 | 3_1:+84706214 | None:intergenic |
| CGGACACACACGAAAGAGTA+AGG | 0.444460 | 3_1:+84706554 | None:intergenic |
| ATCGTTGCCTTATCCACCTT+CGG | 0.448632 | 3_1:-84705749 | Msa0382220:intron |
| ATTTGGTGGAGTGGATATAT+AGG | 0.449440 | 3_1:-84703147 | Msa0382220:CDS |
| CAGAACCTGTAGAGGTATGA+TGG | 0.450369 | 3_1:+84703009 | None:intergenic |
| TAAAATTTGTCACTCCTATC+GGG | 0.453788 | 3_1:-84700600 | Msa0382220:three_prime_UTR |
| AGCAGCAAAGCCTCGTCCTC+CGG | 0.454833 | 3_1:+84706304 | None:intergenic |
| GTTTGCCGATGCCCTTATAT+GGG | 0.455839 | 3_1:-84700567 | Msa0382220:three_prime_UTR |
| CTGCTCGTTCTTAGCTTCCT+GGG | 0.460258 | 3_1:-84701182 | Msa0382220:CDS |
| ATACAAGTTCTTAAGTGAAA+AGG | 0.460456 | 3_1:+84701157 | None:intergenic |
| CCTGGGAAGCTATTTAGATT+GGG | 0.461171 | 3_1:-84700627 | Msa0382220:three_prime_UTR |
| TACCAGTTCATTGTTGGTGA+TGG | 0.464034 | 3_1:-84705073 | Msa0382220:intron |
| TTCAATGGTGGATCCCAAAT+CGG | 0.464651 | 3_1:+84706229 | None:intergenic |
| AAAGAGAGCTTAAAATGTTG+TGG | 0.465718 | 3_1:-84700670 | Msa0382220:three_prime_UTR |
| TAAAGCCGAGGGTGAGGGAT+TGG | 0.474854 | 3_1:-84705511 | Msa0382220:CDS |
| TTTGATTATGGCGGCGGCGG+AGG | 0.475500 | 3_1:-84706345 | Msa0382220:exon |
| GTAGGTACCGAAGGTGGATA+AGG | 0.477922 | 3_1:+84705742 | None:intergenic |
| CCCAATCTAAATAGCTTCCC+AGG | 0.481548 | 3_1:+84700627 | None:intergenic |
| GTATATCTTGGAAGTGGAAG+AGG | 0.485555 | 3_1:-84702537 | Msa0382220:intron |
| CAGTTGCTGACACGTTGCTT+TGG | 0.485790 | 3_1:-84701946 | Msa0382220:CDS |
| CGCCATAATCAAATGCAGTC+TGG | 0.486266 | 3_1:+84706355 | None:intergenic |
| AGCAACTAAAGCCGAGGGTG+AGG | 0.494138 | 3_1:-84705517 | Msa0382220:CDS |
| GGCTTGCAGTTGGTGAATCT+CGG | 0.500925 | 3_1:+84706450 | None:intergenic |
| CTTAAAATGTTGTGGGTTGG+AGG | 0.501325 | 3_1:-84700662 | Msa0382220:three_prime_UTR |
| AGGTTTGTTGCGAAGATCGA+CGG | 0.502657 | 3_1:+84706139 | None:intergenic |
| TTATAAAATAAGAAATGTCA+TGG | 0.504092 | 3_1:+84700290 | None:intergenic |
| TGCACCCATCATACCTCTAC+AGG | 0.507092 | 3_1:-84703014 | Msa0382220:intron |
| GCATTTGATTATGGCGGCGG+CGG | 0.508585 | 3_1:-84706348 | Msa0382220:exon |
| GAAAGGTGGTGTGTGGTCAC+CGG | 0.510184 | 3_1:-84706323 | Msa0382220:CDS |
| AAGATATACAGAAGCTTTGG+AGG | 0.510237 | 3_1:+84702551 | None:intergenic |
| TCGAATCATATCCACATTTG+AGG | 0.511233 | 3_1:-84702608 | Msa0382220:CDS |
| GAGCTTAAAATGTTGTGGGT+TGG | 0.511327 | 3_1:-84700665 | Msa0382220:three_prime_UTR |
| TGCTGACACGTTGCTTTGGA+AGG | 0.511938 | 3_1:-84701942 | Msa0382220:CDS |
| TGTGTGGTCACCGGAGGACG+AGG | 0.512379 | 3_1:-84706314 | Msa0382220:CDS |
| GCGATATCTCTCCTCACAAA+AGG | 0.515045 | 3_1:-84706505 | Msa0382220:five_prime_UTR |
| AAGAGAGCTTAAAATGTTGT+GGG | 0.515659 | 3_1:-84700669 | Msa0382220:three_prime_UTR |
| ATGTGAGTCTTATTCTTGAA+GGG | 0.515692 | 3_1:+84703086 | None:intergenic |
| GCTTCTGTATATCTTGGAAG+TGG | 0.518379 | 3_1:-84702543 | Msa0382220:CDS |
| TTGAGAAAATGCCCACATCA+TGG | 0.518767 | 3_1:-84701436 | Msa0382220:CDS |
| GCAACTAAAGCCGAGGGTGA+GGG | 0.520116 | 3_1:-84705516 | Msa0382220:CDS |
| TTTGCAGCATCAACCAATGA+AGG | 0.520481 | 3_1:+84705402 | None:intergenic |
| TGCAGCATTTGAAGGAGTTG+AGG | 0.521031 | 3_1:-84706033 | Msa0382220:intron |
| CCAATTATTCCCTTCTGCAA+GGG | 0.522767 | 3_1:+84701331 | None:intergenic |
| CCCAATTATTCCCTTCTGCA+AGG | 0.526936 | 3_1:+84701330 | None:intergenic |
| ACTGCATTTGATTATGGCGG+CGG | 0.527486 | 3_1:-84706351 | Msa0382220:exon |
| GAGCTCGATCAGCACATATG+TGG | 0.527742 | 3_1:+84705005 | None:intergenic |
| TGGAGGTTGATTGATAAACC+TGG | 0.528757 | 3_1:-84700645 | Msa0382220:three_prime_UTR |
| TGGAAGGTCTTGGATATCAA+AGG | 0.529691 | 3_1:-84704231 | Msa0382220:intron |
| CCTTGCAGAAGGGAATAATT+GGG | 0.540074 | 3_1:-84701330 | Msa0382220:CDS |
| TTATGGCGGCGGCGGAGGAA+AGG | 0.542684 | 3_1:-84706340 | Msa0382220:CDS |
| TGGCGGCGGCGGAGGAAAGG+TGG | 0.543511 | 3_1:-84706337 | Msa0382220:CDS |
| CGAATCATATCCACATTTGA+GGG | 0.546936 | 3_1:-84702607 | Msa0382220:CDS |
| CTTCTATTATACTCATCGAT+CGG | 0.547051 | 3_1:-84701824 | Msa0382220:CDS |
| CAGACTGCATTTGATTATGG+CGG | 0.547350 | 3_1:-84706354 | Msa0382220:exon |
| TTGAGCAAACATGACTCAAA+GGG | 0.547821 | 3_1:+84700518 | None:intergenic |
| CATCTTCATTTAATCCACGT+TGG | 0.548065 | 3_1:-84700834 | Msa0382220:three_prime_UTR |
| TGATTGGTGATTATCTTTGG+CGG | 0.548486 | 3_1:-84700541 | Msa0382220:three_prime_UTR |
| TTCATTGGTTGATGCTGCAA+AGG | 0.548711 | 3_1:-84705400 | Msa0382220:CDS |
| TAGGGCGTATGCAACATGTC+AGG | 0.552269 | 3_1:+84705460 | None:intergenic |
| ATTGGCATGATAACAAAGAC+AGG | 0.553368 | 3_1:+84703175 | None:intergenic |
| GTAGAAAGCTGTAAATGCTA+AGG | 0.553726 | 3_1:+84701026 | None:intergenic |
| GAGTGGATATATAGGCTGCT+TGG | 0.554338 | 3_1:-84703139 | Msa0382220:CDS |
| GGACACAGTAGGTGTTCAAT+CGG | 0.555516 | 3_1:+84706258 | None:intergenic |
| AAGACAGGGATCTTTATGCT+TGG | 0.556912 | 3_1:+84703190 | None:intergenic |
| GCAGTCTGGAAGGTTAGTTA+TGG | 0.557136 | 3_1:+84706369 | None:intergenic |
| TGTAAACTTGCTCGGAGTAG+AGG | 0.558240 | 3_1:-84700737 | Msa0382220:three_prime_UTR |
| CTTTGTAAGAGCAGTAATGA+AGG | 0.563257 | 3_1:+84701847 | None:intergenic |
| CACATCCCATATAAGGGCAT+CGG | 0.564155 | 3_1:+84700562 | None:intergenic |
| ATCGCAGCCGTAAATGGTGA+TGG | 0.564493 | 3_1:+84706523 | None:intergenic |
| TCTTTCGTGTGTGTCCGCGA+CGG | 0.564998 | 3_1:-84706548 | Msa0382220:five_prime_UTR |
| TCTTAAGTGAAAAGGCTCCC+AGG | 0.566172 | 3_1:+84701165 | None:intergenic |
| CAACTTAAGTCTAAAAGAGA+AGG | 0.566200 | 3_1:-84702576 | Msa0382220:CDS |
| GCATTAAAATCCCTTGCAGA+AGG | 0.567802 | 3_1:-84701341 | Msa0382220:CDS |
| GCGCCGCTGAGGCTTGCAGT+TGG | 0.573654 | 3_1:+84706440 | None:intergenic |
| TGGACCTGGTGATAAACTGT+TGG | 0.573810 | 3_1:-84705427 | Msa0382220:CDS |
| GCTTGGCCCATATGGAATGA+AGG | 0.577124 | 3_1:-84703122 | Msa0382220:CDS |
| TTTCACATATGTTGAAAATG+TGG | 0.577379 | 3_1:-84705035 | Msa0382220:CDS |
| TCAAAACCTGTAACATGACA+TGG | 0.578204 | 3_1:-84700412 | Msa0382220:three_prime_UTR |
| GAGGCACCTTCATTCCATAT+GGG | 0.580167 | 3_1:+84703116 | None:intergenic |
| TTTGAGCAAACATGACTCAA+AGG | 0.583039 | 3_1:+84700517 | None:intergenic |
| AGAAGACCTAATTGCTCAGA+GGG | 0.584128 | 3_1:+84706200 | None:intergenic |
| GCCCTTATATGGGATGTGAT+TGG | 0.584219 | 3_1:-84700557 | Msa0382220:three_prime_UTR |
| GGCGGAGGAAAGGTGGTGTG+TGG | 0.587912 | 3_1:-84706330 | Msa0382220:CDS |
| CACAGCAAAATTCCAAGATG+AGG | 0.589243 | 3_1:+84701367 | None:intergenic |
| TGATCGAGCTCTAGCTTCAG+AGG | 0.590757 | 3_1:-84704993 | Msa0382220:CDS |
| TGTGAGTCTTATTCTTGAAG+GGG | 0.592528 | 3_1:+84703087 | None:intergenic |
| CATTAAAATCCCTTGCAGAA+GGG | 0.592814 | 3_1:-84701340 | Msa0382220:CDS |
| AGAACCTGTAGAGGTATGAT+GGG | 0.594321 | 3_1:+84703010 | None:intergenic |
| AGCTCGATCAGCACATATGT+GGG | 0.596317 | 3_1:+84705006 | None:intergenic |
| GGAGGTTGATTGATAAACCT+GGG | 0.598447 | 3_1:-84700644 | Msa0382220:three_prime_UTR |
| GTATGATGGGTGCATAGTCA+AGG | 0.599231 | 3_1:+84703023 | None:intergenic |
| CATTGACGGAATGATGAAGC+TGG | 0.600987 | 3_1:+84705967 | None:intergenic |
| TCACCAACTGCAAGCCTCAG+CGG | 0.601878 | 3_1:-84706443 | Msa0382220:intron |
| GGACGTGGATCGCGCCGCTG+AGG | 0.602311 | 3_1:+84706429 | None:intergenic |
| GGAGACATATTGAGCACGAC+CGG | 0.604728 | 3_1:+84706160 | None:intergenic |
| AATAACCAATCCCTCACCCT+CGG | 0.605731 | 3_1:+84705506 | None:intergenic |
| TTACTCAGCAACTAAAGCCG+AGG | 0.607635 | 3_1:-84705523 | Msa0382220:CDS |
| ATTCTTGAAGGGGTCAGCTG+AGG | 0.610389 | 3_1:+84703097 | None:intergenic |
| ATAATCAAATGCAGTCTGGA+AGG | 0.612641 | 3_1:+84706359 | None:intergenic |
| AGGTGGTGTGTGGTCACCGG+AGG | 0.612663 | 3_1:-84706320 | Msa0382220:CDS |
| TGGTTGATGCTGCAAAGGCA+GGG | 0.613832 | 3_1:-84705395 | Msa0382220:CDS |
| CTCGGTCAAGCTTTACACTC+CGG | 0.614278 | 3_1:-84706179 | Msa0382220:CDS |
| ATTAAGGCTAATGGGACTAG+TGG | 0.621571 | 3_1:-84705486 | Msa0382220:CDS |
| GAGAAGACCTAATTGCTCAG+AGG | 0.625054 | 3_1:+84706199 | None:intergenic |
| TGGCAAAGGCTCCTTTGAGT+CGG | 0.625999 | 3_1:-84700440 | Msa0382220:three_prime_UTR |
| CAATTGCACATTTGGTGGAG+TGG | 0.628998 | 3_1:-84703156 | Msa0382220:CDS |
| AGAGGGTTCAAGTTCAATGG+TGG | 0.630912 | 3_1:+84706217 | None:intergenic |
| AAACCGATTAAATTCCCGAT+AGG | 0.632453 | 3_1:+84700586 | None:intergenic |
| GGCACCAACAGTTTATCACC+AGG | 0.633574 | 3_1:+84705423 | None:intergenic |
| CGGACACCCGAAAGTAGAGA+AGG | 0.635370 | 3_1:+84706404 | None:intergenic |
| TACTCAGCAACTAAAGCCGA+GGG | 0.636180 | 3_1:-84705522 | Msa0382220:CDS |
| GATCGAGCTCTAGCTTCAGA+GGG | 0.640107 | 3_1:-84704992 | Msa0382220:CDS |
| GGTAAAGTAGGTACCGAAGG+TGG | 0.641463 | 3_1:+84705736 | None:intergenic |
| AAAGGCGACTGTCGTCGCAA+CGG | 0.646567 | 3_1:-84706487 | Msa0382220:five_prime_UTR |
| AAACGTCACAGAACCTGTAG+AGG | 0.648903 | 3_1:+84703001 | None:intergenic |
| TGATAAGTGAAACCATGATG+TGG | 0.662199 | 3_1:+84701424 | None:intergenic |
| AGATATACAGAAGCTTTGGA+GGG | 0.663079 | 3_1:+84702552 | None:intergenic |
| ATCGGCGATGCGGACACAGT+AGG | 0.665728 | 3_1:+84706247 | None:intergenic |
| GGACACACACGAAAGAGTAA+GGG | 0.672386 | 3_1:+84706555 | None:intergenic |
| AGTTATGGATCACAGAGTCA+CGG | 0.675946 | 3_1:+84706384 | None:intergenic |
| TGCAAAGGCAGGGAAATCCA+AGG | 0.678227 | 3_1:-84705385 | Msa0382220:intron |
| TGGATCCCAAATCGGCGATG+CGG | 0.678949 | 3_1:+84706237 | None:intergenic |
| GATAAGTGAAACCATGATGT+GGG | 0.683459 | 3_1:+84701425 | None:intergenic |
| CAAAACCTGTAACATGACAT+GGG | 0.684151 | 3_1:-84700411 | Msa0382220:three_prime_UTR |
| AATAATTGTACAATGATACA+GGG | 0.693390 | 3_1:+84700807 | None:intergenic |
| TCTTGCAGGAGGGCATACGG+AGG | 0.702619 | 3_1:-84702635 | Msa0382220:intron |
| GCAGTTGGTGAATCTCGGTG+CGG | 0.718655 | 3_1:+84706455 | None:intergenic |
| AAATGGTGATGGAACCGTCG+CGG | 0.723389 | 3_1:+84706534 | None:intergenic |
| TTGGCATGATAACAAAGACA+GGG | 0.735805 | 3_1:+84703176 | None:intergenic |
| TGATGGGTGCATAGTCAAGG+CGG | 0.737283 | 3_1:+84703026 | None:intergenic |
| TGATACAGGGAATTCCAACG+TGG | 0.825223 | 3_1:+84700820 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAAAAAAAAAAACATTAA+GGG | + | chr3_1:84703495-84703514 | None:intergenic | 10.0% |
| !!! | TCTATTTTTTTAATGAAATA+AGG | - | chr3_1:84703578-84703597 | Msa0382220:intron | 10.0% |
| !!! | TATGTTTATATTAGTTTATT+TGG | + | chr3_1:84703625-84703644 | None:intergenic | 10.0% |
| !! | AACTAATATAAACATAATTA+TGG | - | chr3_1:84703629-84703648 | Msa0382220:intron | 10.0% |
| !! | ATATTAAAAAAAAAAAACGT+TGG | - | chr3_1:84704547-84704566 | Msa0382220:intron | 10.0% |
| !! | TATGTATATTATCTTTAAAT+AGG | + | chr3_1:84705265-84705284 | None:intergenic | 10.0% |
| !! | ATATAATTTAATCTAGCTAT+TGG | - | chr3_1:84701274-84701293 | Msa0382220:intron | 15.0% |
| !! | TATAATTTAATCTAGCTATT+GGG | - | chr3_1:84701275-84701294 | Msa0382220:intron | 15.0% |
| !! | ATAAATCATCAATTAAAGAA+AGG | + | chr3_1:84701786-84701805 | None:intergenic | 15.0% |
| !! | AAACAATGTTAATATGTTAA+AGG | - | chr3_1:84702123-84702142 | Msa0382220:intron | 15.0% |
| !!! | TTTAATTTCATTTTTTGCTT+AGG | + | chr3_1:84702877-84702896 | None:intergenic | 15.0% |
| !! | GCATAAAAAAAAAAACATTA+AGG | + | chr3_1:84703496-84703515 | None:intergenic | 15.0% |
| !!! | TTTTTAAAATCACATACTTT+TGG | - | chr3_1:84705922-84705941 | Msa0382220:intron | 15.0% |
| !! | TTATAAAATAAGAAATGTCA+TGG | + | chr3_1:84706602-84706621 | None:intergenic | 15.0% |
| !! | TAGTTGTTTAAAGAAGAATT+TGG | + | chr3_1:84700902-84700921 | None:intergenic | 20.0% |
| !!! | TAACTTTCATTTTTTTGACT+TGG | - | chr3_1:84701188-84701207 | Msa0382220:CDS | 20.0% |
| !! | TTGTTAAACTTAGTTAGATT+CGG | - | chr3_1:84702464-84702483 | Msa0382220:intron | 20.0% |
| !!! | ATGATAAATACTTGTTTTGT+AGG | - | chr3_1:84702578-84702597 | Msa0382220:CDS | 20.0% |
| !!! | GTTTTATTCCATAATATTGA+AGG | - | chr3_1:84703066-84703085 | Msa0382220:CDS | 20.0% |
| !! | AAAGATAATAATTAATAGCC+AGG | + | chr3_1:84703171-84703190 | None:intergenic | 20.0% |
| !! | AATCCAAATAAGCTATAAAT+AGG | + | chr3_1:84703217-84703236 | None:intergenic | 20.0% |
| !! | TAATTAAGCATATATTGAGT+AGG | + | chr3_1:84703408-84703427 | None:intergenic | 20.0% |
| !!! | AATTAAGTTGTTTATCCAAA+TGG | - | chr3_1:84703423-84703442 | Msa0382220:intron | 20.0% |
| !! | TGAAATAAGGAATACATTTA+CGG | - | chr3_1:84703591-84703610 | Msa0382220:intron | 20.0% |
| !! | TGTTCTTCATGTTTAATTAA+GGG | - | chr3_1:84704220-84704239 | Msa0382220:intron | 20.0% |
| !!! | TTTAGACTTAAGTTGATTTT+CGG | + | chr3_1:84704308-84704327 | None:intergenic | 20.0% |
| !! | CCAAAACAAAAATAACAAAA+AGG | + | chr3_1:84704432-84704451 | None:intergenic | 20.0% |
| !!! | CCTTTTTGTTATTTTTGTTT+TGG | - | chr3_1:84704429-84704448 | Msa0382220:intron | 20.0% |
| !! | AACTCTTAAAGTTCAAATTT+CGG | - | chr3_1:84704740-84704759 | Msa0382220:intron | 20.0% |
| !! | TTTCTACGTTTATGAAAAAA+AGG | - | chr3_1:84705879-84705898 | Msa0382220:intron | 20.0% |
| !! | AATAATTGTACAATGATACA+GGG | + | chr3_1:84706085-84706104 | None:intergenic | 20.0% |
| !! | TTCTACCAAAAAAATTGATA+TGG | - | chr3_1:84706429-84706448 | Msa0382220:intron | 20.0% |
| !!! | GTTGTTTTGTTTTGGTATTA+AGG | + | chr3_1:84700794-84700813 | None:intergenic | 25.0% |
| !!! | TGTAGAATGTTGTTTTGTTT+TGG | + | chr3_1:84700802-84700821 | None:intergenic | 25.0% |
| !!! | AGTTAGGTGTTTATTTTTGA+AGG | - | chr3_1:84701006-84701025 | Msa0382220:CDS | 25.0% |
| !! | TAGGTTCAAAATGTTTGTTA+TGG | - | chr3_1:84701305-84701324 | Msa0382220:intron | 25.0% |
| ! | AATAAGTAATCCAATACTCA+CGG | - | chr3_1:84701580-84701599 | Msa0382220:intron | 25.0% |
| ! | TTTCACATATGTTGAAAATG+TGG | - | chr3_1:84701854-84701873 | Msa0382220:CDS | 25.0% |
| ! | GCATGACTAAAAAAGTTATA+TGG | + | chr3_1:84701954-84701973 | None:intergenic | 25.0% |
| ! | TTGTAAATGAAAGATAAGAG+AGG | - | chr3_1:84701985-84702004 | Msa0382220:intron | 25.0% |
| !!! | TGATGGTGTATTTTAAGATT+TGG | - | chr3_1:84702022-84702041 | Msa0382220:intron | 25.0% |
| ! | TAAAGGTAGAAACATTTATC+TGG | - | chr3_1:84702140-84702159 | Msa0382220:intron | 25.0% |
| ! | AAAGGTAGAAACATTTATCT+GGG | - | chr3_1:84702141-84702160 | Msa0382220:intron | 25.0% |
| !!! | ATTGAGTATTGCATTTTTTG+TGG | - | chr3_1:84702488-84702507 | Msa0382220:intron | 25.0% |
| !! | ATATGGAACCTATAAAGTTT+TGG | - | chr3_1:84702616-84702635 | Msa0382220:CDS | 25.0% |
| !! | TATGGAACCTATAAAGTTTT+GGG | - | chr3_1:84702617-84702636 | Msa0382220:CDS | 25.0% |
| !!! | GTCTCTTTTGACTATAAATA+GGG | + | chr3_1:84702995-84703014 | None:intergenic | 25.0% |
| !!! | TGTCTCTTTTGACTATAAAT+AGG | + | chr3_1:84702996-84703015 | None:intergenic | 25.0% |
| !!! | TCTTTTTTTTTTTGTGCGTT+TGG | - | chr3_1:84703186-84703205 | Msa0382220:CDS | 25.0% |
| ! | GCTTATTTGGATTTATCTTA+TGG | - | chr3_1:84703224-84703243 | Msa0382220:intron | 25.0% |
| !! | TAGCTTATGATATCTTTTAG+CGG | - | chr3_1:84703283-84703302 | Msa0382220:intron | 25.0% |
| ! | CTTATTTCAATAAGCTCTAT+AGG | - | chr3_1:84703313-84703332 | Msa0382220:intron | 25.0% |
| !! | TACTTTTCATATAAGCACTT+AGG | + | chr3_1:84703385-84703404 | None:intergenic | 25.0% |
| ! | TATTAAATAAGGATGCCATT+TGG | + | chr3_1:84703441-84703460 | None:intergenic | 25.0% |
| ! | GATCAGGTGTTTATTAAATA+AGG | + | chr3_1:84703452-84703471 | None:intergenic | 25.0% |
| !! | TATGAGATGTGATTCTAAAA+TGG | - | chr3_1:84704125-84704144 | Msa0382220:intron | 25.0% |
| ! | GTGTTCTTCATGTTTAATTA+AGG | - | chr3_1:84704219-84704238 | Msa0382220:intron | 25.0% |
| ! | AAAAATTGCAAAGATAATGC+AGG | - | chr3_1:84704571-84704590 | Msa0382220:intron | 25.0% |
| ! | TAGTAAAAAATTAGGAATGG+TGG | + | chr3_1:84704790-84704809 | None:intergenic | 25.0% |
| ! | CACTAGTAAAAAATTAGGAA+TGG | + | chr3_1:84704793-84704812 | None:intergenic | 25.0% |
| ! | GTGATCACTAGTAAAAAATT+AGG | + | chr3_1:84704798-84704817 | None:intergenic | 25.0% |
| ! | GAGAAATTATTTCCTGAATA+AGG | + | chr3_1:84705321-84705340 | None:intergenic | 25.0% |
| !! | AGTCAATTTTATATATCCTG+AGG | - | chr3_1:84705626-84705645 | Msa0382220:intron | 25.0% |
| ! | ATACAAGTTCTTAAGTGAAA+AGG | + | chr3_1:84705735-84705754 | None:intergenic | 25.0% |
| ! | CTTAAGAACTTGTATACTAT+AGG | - | chr3_1:84705740-84705759 | Msa0382220:intron | 25.0% |
| !!! | TTTGTTATTGTCTTTGTTAC+AGG | - | chr3_1:84705835-84705854 | Msa0382220:CDS | 25.0% |
| ! | TTACTTCAAAGATTGATTGA+TGG | - | chr3_1:84705980-84705999 | Msa0382220:CDS | 25.0% |
| ! | CAATAATTGTACAATGATAC+AGG | + | chr3_1:84706086-84706105 | None:intergenic | 25.0% |
| ! | AACTCAAAAAAAACATCTAC+TGG | + | chr3_1:84706125-84706144 | None:intergenic | 25.0% |
| !!! | TTTTGTAATGTAAACTTGCT+CGG | - | chr3_1:84706144-84706163 | Msa0382220:CDS | 25.0% |
| ! | TTAAAATTTGTCACTCCTAT+CGG | - | chr3_1:84706288-84706307 | Msa0382220:CDS | 25.0% |
| ! | GATACATCAGAAAAAAACAA+TGG | + | chr3_1:84706403-84706422 | None:intergenic | 25.0% |
| !!! | CTTTGCCATATCAATTTTTT+TGG | + | chr3_1:84706437-84706456 | None:intergenic | 25.0% |
| ! | CAAAAAAATTGATATGGCAA+AGG | - | chr3_1:84706435-84706454 | Msa0382220:intron | 25.0% |
| AACAAACCTCAACTCTTAAA+AGG | - | chr3_1:84700764-84700783 | Msa0382220:three_prime_UTR | 30.0% | |
| TGTTTCTTTCGATCTAAGTT+AGG | - | chr3_1:84700990-84701009 | Msa0382220:CDS | 30.0% | |
| ATTCCATCAAAAACAACACT+GGG | + | chr3_1:84701096-84701115 | None:intergenic | 30.0% | |
| AATTCCATCAAAAACAACAC+TGG | + | chr3_1:84701097-84701116 | None:intergenic | 30.0% | |
| !!! | GTTGTTTTTGATGGAATTCA+TGG | - | chr3_1:84701099-84701118 | Msa0382220:intron | 30.0% |
| GGAATTCATGGAATTCATAA+TGG | - | chr3_1:84701111-84701130 | Msa0382220:intron | 30.0% | |
| TGAAAGTTAAAACGAAGTGT+TGG | + | chr3_1:84701177-84701196 | None:intergenic | 30.0% | |
| !! | TTGACTTGGATTGAAACTTT+AGG | - | chr3_1:84701202-84701221 | Msa0382220:intron | 30.0% |
| TATACATGATATGCATGGAT+AGG | - | chr3_1:84701237-84701256 | Msa0382220:intron | 30.0% | |
| ATACATGATATGCATGGATA+GGG | - | chr3_1:84701238-84701257 | Msa0382220:intron | 30.0% | |
| ATTTAATCTAGCTATTGGGA+TGG | - | chr3_1:84701279-84701298 | Msa0382220:intron | 30.0% | |
| ! | GATTGGTTATTAAGGCTAAT+GGG | - | chr3_1:84701395-84701414 | Msa0382220:CDS | 30.0% |
| ATCAAACATTTACCAAAAGC+AGG | + | chr3_1:84701545-84701564 | None:intergenic | 30.0% | |
| ! | TAAATCCAATTTTGTTCCTG+TGG | + | chr3_1:84701647-84701666 | None:intergenic | 30.0% |
| ! | TAAAATTAAGTGCCGTGATA+TGG | - | chr3_1:84701698-84701717 | Msa0382220:intron | 30.0% |
| AACATTTATCTGGGTAAATG+AGG | - | chr3_1:84702150-84702169 | Msa0382220:intron | 30.0% | |
| AAGACATACTTGTGGATATT+AGG | - | chr3_1:84702181-84702200 | Msa0382220:intron | 30.0% | |
| !!! | TTGTAGACAAAGGTTTTGTT+AGG | + | chr3_1:84702233-84702252 | None:intergenic | 30.0% |
| ! | ATAAACCTTGTTGTAGACAA+AGG | + | chr3_1:84702243-84702262 | None:intergenic | 30.0% |
| AACAAGGTTTATCTATCTCA+GGG | - | chr3_1:84702251-84702270 | Msa0382220:intron | 30.0% | |
| AAGTTCAGAAAAATTGAGAG+AGG | + | chr3_1:84702387-84702406 | None:intergenic | 30.0% | |
| ! | ATTTTTCTGAACTTTCTCTC+TGG | - | chr3_1:84702393-84702412 | Msa0382220:intron | 30.0% |
| AACATCAGTTTCTAACAGTA+GGG | - | chr3_1:84702431-84702450 | Msa0382220:intron | 30.0% | |
| ATGGATCTGTATATTAAGCT+TGG | - | chr3_1:84702524-84702543 | Msa0382220:intron | 30.0% | |
| TGGATCTGTATATTAAGCTT+GGG | - | chr3_1:84702525-84702544 | Msa0382220:intron | 30.0% | |
| GGCATATTTCATTACGAATA+TGG | - | chr3_1:84702599-84702618 | Msa0382220:CDS | 30.0% | |
| ATGAACTCCCAAAACTTTAT+AGG | + | chr3_1:84702627-84702646 | None:intergenic | 30.0% | |
| ! | TTCATGTCTCTAATTTTGGA+AGG | - | chr3_1:84702642-84702661 | Msa0382220:intron | 30.0% |
| ! | CTTTTGTACTGTTAACCATT+AGG | - | chr3_1:84702687-84702706 | Msa0382220:intron | 30.0% |
| ACTTTAATTCACGAGAGATT+TGG | + | chr3_1:84702780-84702799 | None:intergenic | 30.0% | |
| !!! | ATTTTGACTTGAAACACTTC+AGG | - | chr3_1:84702808-84702827 | Msa0382220:intron | 30.0% |
| !! | TTTTGACTATAAATAGGGCA+GGG | + | chr3_1:84702990-84703009 | None:intergenic | 30.0% |
| TATTTGCGCCTTCAATATTA+TGG | + | chr3_1:84703077-84703096 | None:intergenic | 30.0% | |
| !! | CGCAAATATAAGTTGGATTT+TGG | - | chr3_1:84703089-84703108 | Msa0382220:CDS | 30.0% |
| !! | ATAAGTTGGATTTTGGCATT+AGG | - | chr3_1:84703096-84703115 | Msa0382220:CDS | 30.0% |
| GAGCCTATTTATAGCTTATT+TGG | - | chr3_1:84703211-84703230 | Msa0382220:intron | 30.0% | |
| ATGTAATCAAAGAGTGAATG+TGG | + | chr3_1:84703351-84703370 | None:intergenic | 30.0% | |
| ! | AAAAACATTAAGGGTGCATT+AGG | + | chr3_1:84703486-84703505 | None:intergenic | 30.0% |
| GTACATAACTCAGATAACAA+AGG | + | chr3_1:84703671-84703690 | None:intergenic | 30.0% | |
| !! | ATGTGAGTCTTATTCTTGAA+GGG | + | chr3_1:84703806-84703825 | None:intergenic | 30.0% |
| ! | TTTTGAGCAATCAAAAGATC+TGG | + | chr3_1:84703835-84703854 | None:intergenic | 30.0% |
| !! | TTTTGATTGCTCAAAAGCAA+AGG | - | chr3_1:84703839-84703858 | Msa0382220:intron | 30.0% |
| TGTCTTAACTCCAATATTCA+TGG | - | chr3_1:84703930-84703949 | Msa0382220:intron | 30.0% | |
| !!! | GGATTTTTTTTCAAAGCACA+TGG | + | chr3_1:84704023-84704042 | None:intergenic | 30.0% |
| GAAAAAAAATCCTGAGAAGT+TGG | - | chr3_1:84704031-84704050 | Msa0382220:intron | 30.0% | |
| ! | CACAGTATCAGTAATTTTGT+AGG | + | chr3_1:84704069-84704088 | None:intergenic | 30.0% |
| CTACAAAATTACTGATACTG+TGG | - | chr3_1:84704067-84704086 | Msa0382220:intron | 30.0% | |
| TGTTAATCCTACTTCTTGTA+CGG | - | chr3_1:84704195-84704214 | Msa0382220:intron | 30.0% | |
| CAACTTAAGTCTAAAAGAGA+AGG | - | chr3_1:84704313-84704332 | Msa0382220:intron | 30.0% | |
| CACAAACAAAGAAGTTAGAT+GGG | + | chr3_1:84704396-84704415 | None:intergenic | 30.0% | |
| TCACAAACAAAGAAGTTAGA+TGG | + | chr3_1:84704397-84704416 | None:intergenic | 30.0% | |
| ! | ACTTCTTTGTTTGTGATATC+TGG | - | chr3_1:84704401-84704420 | Msa0382220:intron | 30.0% |
| TCTAAACGCCATTTAAAAGT+AGG | - | chr3_1:84704480-84704499 | Msa0382220:intron | 30.0% | |
| !! | TGAATGTGCCTACTTTTAAA+TGG | + | chr3_1:84704491-84704510 | None:intergenic | 30.0% |
| GGATATGACATGAACAAATT+GGG | + | chr3_1:84704617-84704636 | None:intergenic | 30.0% | |
| AGGATATGACATGAACAAAT+TGG | + | chr3_1:84704618-84704637 | None:intergenic | 30.0% | |
| TAAAAAATTAGGAATGGTGG+TGG | + | chr3_1:84704787-84704806 | None:intergenic | 30.0% | |
| CTTCTATTATACTCATCGAT+CGG | - | chr3_1:84705065-84705084 | Msa0382220:CDS | 30.0% | |
| TACAGTGTTAATTGACAATC+TGG | + | chr3_1:84705180-84705199 | None:intergenic | 30.0% | |
| ATTGTATGCTTGTTCAGATT+GGG | - | chr3_1:84705422-84705441 | Msa0382220:CDS | 30.0% | |
| ! | TAATTGGGTGATGTTTTTCA+AGG | - | chr3_1:84705574-84705593 | Msa0382220:intron | 30.0% |
| AAACAACCTATTGATCACAA+AGG | + | chr3_1:84705682-84705701 | None:intergenic | 30.0% | |
| CTACGTTTATGAAAAAAAGG+AGG | - | chr3_1:84705882-84705901 | Msa0382220:intron | 30.0% | |
| !! | CTTTGAAGTAACAAACTTCT+TGG | + | chr3_1:84705971-84705990 | None:intergenic | 30.0% |
| !!! | TTGATGGTTTTTTCTTCTTC+TGG | - | chr3_1:84705996-84706015 | Msa0382220:CDS | 30.0% |
| ! | CTAGATTTTTCTTAGATGAG+CGG | - | chr3_1:84706025-84706044 | Msa0382220:CDS | 30.0% |
| ! | TAGATTTTTCTTAGATGAGC+GGG | - | chr3_1:84706026-84706045 | Msa0382220:CDS | 30.0% |
| AAAGAGAGCTTAAAATGTTG+TGG | - | chr3_1:84706219-84706238 | Msa0382220:CDS | 30.0% | |
| AAGAGAGCTTAAAATGTTGT+GGG | - | chr3_1:84706220-84706239 | Msa0382220:CDS | 30.0% | |
| TAAAATTTGTCACTCCTATC+GGG | - | chr3_1:84706289-84706308 | Msa0382220:CDS | 30.0% | |
| ! | ATGTGATTGGTGATTATCTT+TGG | - | chr3_1:84706345-84706364 | Msa0382220:exon | 30.0% |
| ATAATCAAATGCAGTCTGGA+AGG | + | chr3_1:84700533-84700552 | None:intergenic | 35.0% | |
| TTCCAGACTGCATTTGATTA+TGG | - | chr3_1:84700532-84700551 | Msa0382220:three_prime_UTR | 35.0% | |
| !! | GGTTAACCTTTTAAGAGTTG+AGG | + | chr3_1:84700773-84700792 | None:intergenic | 35.0% |
| TTAATCTCTGCAGCATTTGA+AGG | - | chr3_1:84700848-84700867 | Msa0382220:three_prime_UTR | 35.0% | |
| !! | AGTTGAGGTTGTTTTCCATA+TGG | - | chr3_1:84700871-84700890 | Msa0382220:three_prime_UTR | 35.0% |
| !! | AAACGAAGTGTTGGTAAAGT+AGG | + | chr3_1:84701168-84701187 | None:intergenic | 35.0% |
| CTGCATATACATGATATGCA+TGG | - | chr3_1:84701232-84701251 | Msa0382220:intron | 35.0% | |
| TACATGATATGCATGGATAG+GGG | - | chr3_1:84701239-84701258 | Msa0382220:intron | 35.0% | |
| ATCATTATGCTGGAAACAGT+AGG | + | chr3_1:84701344-84701363 | None:intergenic | 35.0% | |
| CTGAGTAATGATCATTATGC+TGG | + | chr3_1:84701354-84701373 | None:intergenic | 35.0% | |
| !! | GGATTGGTTATTAAGGCTAA+TGG | - | chr3_1:84701394-84701413 | Msa0382220:CDS | 35.0% |
| ! | ATGTTGTTCTTACCTGCTTT+TGG | - | chr3_1:84701530-84701549 | Msa0382220:intron | 35.0% |
| ! | TTGAATCTGAAGTTTACCAC+AGG | - | chr3_1:84701628-84701647 | Msa0382220:intron | 35.0% |
| GTTTACCACAGGAACAAAAT+TGG | - | chr3_1:84701639-84701658 | Msa0382220:intron | 35.0% | |
| ! | CAACCAGTTTTTCCATATCA+CGG | + | chr3_1:84701713-84701732 | None:intergenic | 35.0% |
| GTGATATGGAAAAACTGGTT+GGG | - | chr3_1:84701712-84701731 | Msa0382220:intron | 35.0% | |
| TGATATGGAAAAACTGGTTG+GGG | - | chr3_1:84701713-84701732 | Msa0382220:intron | 35.0% | |
| AAGTAGTCACACATGCATAT+TGG | + | chr3_1:84701740-84701759 | None:intergenic | 35.0% | |
| TTCTCTTACCAGTTCATTGT+TGG | - | chr3_1:84701810-84701829 | Msa0382220:CDS | 35.0% | |
| !! | AGGCATAAGAGAAGTTTTGA+TGG | - | chr3_1:84702005-84702024 | Msa0382220:intron | 35.0% |
| AAGTCTGAAAGACATACTTG+TGG | - | chr3_1:84702173-84702192 | Msa0382220:intron | 35.0% | |
| TTAGGAATAGAAAAGTCCAG+TGG | - | chr3_1:84702199-84702218 | Msa0382220:intron | 35.0% | |
| TAGGAATAGAAAAGTCCAGT+GGG | - | chr3_1:84702200-84702219 | Msa0382220:intron | 35.0% | |
| CAAAACCTTTGTCTACAACA+AGG | - | chr3_1:84702235-84702254 | Msa0382220:intron | 35.0% | |
| CAACAAGGTTTATCTATCTC+AGG | - | chr3_1:84702250-84702269 | Msa0382220:intron | 35.0% | |
| GAACATCAGTTTCTAACAGT+AGG | - | chr3_1:84702430-84702449 | Msa0382220:intron | 35.0% | |
| TTGTGGAGAAAAACGAAAGA+TGG | - | chr3_1:84702505-84702524 | Msa0382220:intron | 35.0% | |
| ! | GGAGTTCATGTCTCTAATTT+TGG | - | chr3_1:84702638-84702657 | Msa0382220:intron | 35.0% |
| !! | TCTCTAATTTTGGAAGGTCT+TGG | - | chr3_1:84702648-84702667 | Msa0382220:intron | 35.0% |
| TAAGAGCAAGAAAGACCTAA+TGG | + | chr3_1:84702705-84702724 | None:intergenic | 35.0% | |
| TTCACTCTTGATGCAAAACA+AGG | - | chr3_1:84702752-84702771 | Msa0382220:intron | 35.0% | |
| TTTGACTATAAATAGGGCAG+GGG | + | chr3_1:84702989-84703008 | None:intergenic | 35.0% | |
| !! | CTTTTGACTATAAATAGGGC+AGG | + | chr3_1:84702991-84703010 | None:intergenic | 35.0% |
| TATAGTCAAAAGAGACATGC+TGG | - | chr3_1:84702999-84703018 | Msa0382220:intron | 35.0% | |
| ! | TTGAAGGCGCAAATATAAGT+TGG | - | chr3_1:84703082-84703101 | Msa0382220:CDS | 35.0% |
| !! | TGGATTTTGGCATTAGGATT+AGG | - | chr3_1:84703102-84703121 | Msa0382220:CDS | 35.0% |
| AGTTTCTGTCAAATCATCTC+TGG | - | chr3_1:84703129-84703148 | Msa0382220:CDS | 35.0% | |
| GTTTCTGTCAAATCATCTCT+GGG | - | chr3_1:84703130-84703149 | Msa0382220:CDS | 35.0% | |
| !!! | GGGTTAAGAATTTTTTGTCC+TGG | - | chr3_1:84703150-84703169 | Msa0382220:CDS | 35.0% |
| TTAGGTTACGAAACTTGATC+AGG | + | chr3_1:84703468-84703487 | None:intergenic | 35.0% | |
| TTGGCATGATAACAAAGACA+GGG | + | chr3_1:84703716-84703735 | None:intergenic | 35.0% | |
| ATTGGCATGATAACAAAGAC+AGG | + | chr3_1:84703717-84703736 | None:intergenic | 35.0% | |
| TATCATGCCAATTGCACATT+TGG | - | chr3_1:84703725-84703744 | Msa0382220:intron | 35.0% | |
| ! | ATTTGGTGGAGTGGATATAT+AGG | - | chr3_1:84703742-84703761 | Msa0382220:intron | 35.0% |
| !! | TGTGAGTCTTATTCTTGAAG+GGG | + | chr3_1:84703805-84703824 | None:intergenic | 35.0% |
| !! | GATGTGAGTCTTATTCTTGA+AGG | + | chr3_1:84703807-84703826 | None:intergenic | 35.0% |
| !! | TTTTTCAAAGCACATGGTTC+AGG | + | chr3_1:84704017-84704036 | None:intergenic | 35.0% |
| TTAGAATTAGCCAACTTCTC+AGG | + | chr3_1:84704044-84704063 | None:intergenic | 35.0% | |
| GTTAATCCTACTTCTTGTAC+GGG | - | chr3_1:84704196-84704215 | Msa0382220:intron | 35.0% | |
| TTAATCCTACTTCTTGTACG+GGG | - | chr3_1:84704197-84704216 | Msa0382220:intron | 35.0% | |
| ! | ACTGTAATTTTTCTTGCAGG+AGG | - | chr3_1:84704243-84704262 | Msa0382220:CDS | 35.0% |
| ! | CTGTAATTTTTCTTGCAGGA+GGG | - | chr3_1:84704244-84704263 | Msa0382220:CDS | 35.0% |
| !! | AGATATACAGAAGCTTTGGA+GGG | + | chr3_1:84704340-84704359 | None:intergenic | 35.0% |
| ! | AAGATATACAGAAGCTTTGG+AGG | + | chr3_1:84704341-84704360 | None:intergenic | 35.0% |
| TCCAAAGCTTCTGTATATCT+TGG | - | chr3_1:84704340-84704359 | Msa0382220:intron | 35.0% | |
| TCCAAGATATACAGAAGCTT+TGG | + | chr3_1:84704344-84704363 | None:intergenic | 35.0% | |
| CACATTCACATAATTGTAGC+AGG | - | chr3_1:84704503-84704522 | Msa0382220:intron | 35.0% | |
| ATGAGATATGTGGAGTAGAA+AGG | + | chr3_1:84704638-84704657 | None:intergenic | 35.0% | |
| TCGTATCAAGATGAGATATG+TGG | + | chr3_1:84704648-84704667 | None:intergenic | 35.0% | |
| TAAAGTTCAAATTTCGGAGC+TGG | - | chr3_1:84704746-84704765 | Msa0382220:intron | 35.0% | |
| CTTTGTAAGAGCAGTAATGA+AGG | + | chr3_1:84705045-84705064 | None:intergenic | 35.0% | |
| ! | TCGATCGGTTTATTCATTCA+TGG | - | chr3_1:84705080-84705099 | Msa0382220:intron | 35.0% |
| ACCAGATTGTCAATTAACAC+TGG | - | chr3_1:84705148-84705167 | Msa0382220:intron | 35.0% | |
| TCCAGTGTTAATTGACAATC+TGG | + | chr3_1:84705152-84705171 | None:intergenic | 35.0% | |
| !! | GTCGTTAACTTGTCTAATGA+TGG | - | chr3_1:84705204-84705223 | Msa0382220:intron | 35.0% |
| TGTTGTGTAGTTCCTTATTC+AGG | - | chr3_1:84705306-84705325 | Msa0382220:intron | 35.0% | |
| CATCATTGTAGTTCTTGAGA+TGG | + | chr3_1:84705343-84705362 | None:intergenic | 35.0% | |
| TACAATGATGATCCAGCTAT+TGG | - | chr3_1:84705353-84705372 | Msa0382220:intron | 35.0% | |
| CATTGCACTTTCTAATGTGA+AGG | - | chr3_1:84705379-84705398 | Msa0382220:intron | 35.0% | |
| CATTGTATGCTTGTTCAGAT+TGG | - | chr3_1:84705421-84705440 | Msa0382220:CDS | 35.0% | |
| TTGTATGCTTGTTCAGATTG+GGG | - | chr3_1:84705423-84705442 | Msa0382220:CDS | 35.0% | |
| GATAAGTGAAACCATGATGT+GGG | + | chr3_1:84705467-84705486 | None:intergenic | 35.0% | |
| TGATAAGTGAAACCATGATG+TGG | + | chr3_1:84705468-84705487 | None:intergenic | 35.0% | |
| CATTAAAATCCCTTGCAGAA+GGG | - | chr3_1:84705549-84705568 | Msa0382220:intron | 35.0% | |
| ! | TTTTATATATCCTGAGGTCG+TGG | - | chr3_1:84705632-84705651 | Msa0382220:intron | 35.0% |
| !! | TTGAATCCATTGATAGTGCT+TGG | - | chr3_1:84705796-84705815 | Msa0382220:CDS | 35.0% |
| GTAGAAAGCTGTAAATGCTA+AGG | + | chr3_1:84705866-84705885 | None:intergenic | 35.0% | |
| AAAAAGGAGGAAGACATTGA+CGG | - | chr3_1:84705895-84705914 | Msa0382220:intron | 35.0% | |
| !!! | TGGTTTTTTCTTCTTCTGGT+TGG | - | chr3_1:84706000-84706019 | Msa0382220:CDS | 35.0% |
| CATCTTCATTTAATCCACGT+TGG | - | chr3_1:84706055-84706074 | Msa0382220:intron | 35.0% | |
| !!! | GTAGAGGTATTTTTTTGCAG+TGG | - | chr3_1:84706168-84706187 | Msa0382220:CDS | 35.0% |
| ACTCCTATCGGGAATTTAAT+CGG | - | chr3_1:84706300-84706319 | Msa0382220:CDS | 35.0% | |
| AAACCGATTAAATTCCCGAT+AGG | + | chr3_1:84706306-84706325 | None:intergenic | 35.0% | |
| ACCAATCACATCCCATATAA+GGG | + | chr3_1:84706336-84706355 | None:intergenic | 35.0% | |
| ! | TGATTGGTGATTATCTTTGG+CGG | - | chr3_1:84706348-84706367 | Msa0382220:exon | 35.0% |
| TTGAGCAAACATGACTCAAA+GGG | + | chr3_1:84706374-84706393 | None:intergenic | 35.0% | |
| TTTGAGCAAACATGACTCAA+AGG | + | chr3_1:84706375-84706394 | None:intergenic | 35.0% | |
| TCAAAACCTGTAACATGACA+TGG | - | chr3_1:84706477-84706496 | Msa0382220:five_prime_UTR | 35.0% | |
| CAAAACCTGTAACATGACAT+GGG | - | chr3_1:84706478-84706497 | Msa0382220:five_prime_UTR | 35.0% | |
| AGTTATGGATCACAGAGTCA+CGG | + | chr3_1:84700508-84700527 | None:intergenic | 40.0% | |
| CAGACTGCATTTGATTATGG+CGG | - | chr3_1:84700535-84700554 | Msa0382220:three_prime_UTR | 40.0% | |
| !! | TTCAATGGTGGATCCCAAAT+CGG | + | chr3_1:84700663-84700682 | None:intergenic | 40.0% |
| AGAAGACCTAATTGCTCAGA+GGG | + | chr3_1:84700692-84700711 | None:intergenic | 40.0% | |
| TCTGAGCAATTAGGTCTTCT+CGG | - | chr3_1:84700692-84700711 | Msa0382220:three_prime_UTR | 40.0% | |
| ! | AAGAATTTGGAGCAGCCATA+TGG | + | chr3_1:84700889-84700908 | None:intergenic | 40.0% |
| CATCATTCCGTCAATGTTGA+AGG | - | chr3_1:84700929-84700948 | Msa0382220:CDS | 40.0% | |
| TGCTTCACCTTCAACATTGA+CGG | + | chr3_1:84700939-84700958 | None:intergenic | 40.0% | |
| !!! | TCTCCCAGTGTTGTTTTTGA+TGG | - | chr3_1:84701090-84701109 | Msa0382220:intron | 40.0% |
| CTAGCTATTGGGATGGAAAT+AGG | - | chr3_1:84701286-84701305 | Msa0382220:intron | 40.0% | |
| ATTAAGGCTAATGGGACTAG+TGG | - | chr3_1:84701403-84701422 | Msa0382220:CDS | 40.0% | |
| ! | TAAACTGTTGGTGCCTTCAT+TGG | - | chr3_1:84701474-84701493 | Msa0382220:intron | 40.0% |
| TTTGCAGCATCAACCAATGA+AGG | + | chr3_1:84701490-84701509 | None:intergenic | 40.0% | |
| ! | TTCATTGGTTGATGCTGCAA+AGG | - | chr3_1:84701489-84701508 | Msa0382220:intron | 40.0% |
| GGTAAGAACAACATCTACCT+TGG | + | chr3_1:84701524-84701543 | None:intergenic | 40.0% | |
| GATGAAATTGCCGTGAGTAT+TGG | + | chr3_1:84701593-84701612 | None:intergenic | 40.0% | |
| CGTGATATGGAAAAACTGGT+TGG | - | chr3_1:84701711-84701730 | Msa0382220:intron | 40.0% | |
| ! | TACCAGTTCATTGTTGGTGA+TGG | - | chr3_1:84701816-84701835 | Msa0382220:CDS | 40.0% |
| !! | TCCTGCAGCTTTTTCTGAAA+CGG | + | chr3_1:84701925-84701944 | None:intergenic | 40.0% |
| ATTGTCTGTTCTTTCTTCCC+TGG | - | chr3_1:84702068-84702087 | Msa0382220:intron | 40.0% | |
| ! | TGTTAAAAGTGTGCACACCA+GGG | + | chr3_1:84702088-84702107 | None:intergenic | 40.0% |
| ! | TTGTTAAAAGTGTGCACACC+AGG | + | chr3_1:84702089-84702108 | None:intergenic | 40.0% |
| ! | TGGTGTGCACACTTTTAACA+AGG | - | chr3_1:84702088-84702107 | Msa0382220:intron | 40.0% |
| TCAATCACCCTCAGTTTGAA+CGG | - | chr3_1:84702308-84702327 | Msa0382220:intron | 40.0% | |
| TGGAAGGTCTTGGATATCAA+AGG | - | chr3_1:84702658-84702677 | Msa0382220:intron | 40.0% | |
| ! | TTTTATGCCCACGAGAATAC+TGG | - | chr3_1:84703508-84703527 | Msa0382220:intron | 40.0% |
| AGACAAACCAGTATTCTCGT+GGG | + | chr3_1:84703518-84703537 | None:intergenic | 40.0% | |
| TAGACAAACCAGTATTCTCG+TGG | + | chr3_1:84703519-84703538 | None:intergenic | 40.0% | |
| ATCTGAGTTATGTACCTTGC+AGG | - | chr3_1:84703676-84703695 | Msa0382220:intron | 40.0% | |
| AAGACAGGGATCTTTATGCT+TGG | + | chr3_1:84703702-84703721 | None:intergenic | 40.0% | |
| ! | AGAACCTGTAGAGGTATGAT+GGG | + | chr3_1:84703882-84703901 | None:intergenic | 40.0% |
| CAGTTCAGAGCCATGAATAT+TGG | + | chr3_1:84703943-84703962 | None:intergenic | 40.0% | |
| GGATGATGTTTCTTGCTCAA+AGG | - | chr3_1:84704146-84704165 | Msa0382220:intron | 40.0% | |
| ! | GGGACTGTAATTTTTCTTGC+AGG | - | chr3_1:84704240-84704259 | Msa0382220:CDS | 40.0% |
| GCTTCTGTATATCTTGGAAG+TGG | - | chr3_1:84704346-84704365 | Msa0382220:intron | 40.0% | |
| GTATATCTTGGAAGTGGAAG+AGG | - | chr3_1:84704352-84704371 | Msa0382220:intron | 40.0% | |
| ! | CAGTGTGCTTACATTTTTGC+AGG | + | chr3_1:84705113-84705132 | None:intergenic | 40.0% |
| TTGAGAAAATGCCCACATCA+TGG | - | chr3_1:84705453-84705472 | Msa0382220:CDS | 40.0% | |
| CACAGCAAAATTCCAAGATG+AGG | + | chr3_1:84705525-84705544 | None:intergenic | 40.0% | |
| GCATTAAAATCCCTTGCAGA+AGG | - | chr3_1:84705548-84705567 | Msa0382220:intron | 40.0% | |
| CCAATTATTCCCTTCTGCAA+GGG | + | chr3_1:84705561-84705580 | None:intergenic | 40.0% | |
| CCTTGCAGAAGGGAATAATT+GGG | - | chr3_1:84705559-84705578 | Msa0382220:intron | 40.0% | |
| CTATTGATCACAAAGGAGAG+AGG | + | chr3_1:84705675-84705694 | None:intergenic | 40.0% | |
| CTCTCTCCTTTGTGATCAAT+AGG | - | chr3_1:84705673-84705692 | Msa0382220:intron | 40.0% | |
| TCTCATCCAAGCACTATCAA+TGG | + | chr3_1:84705805-84705824 | None:intergenic | 40.0% | |
| !!! | TTTTGTTGACTCTGAAGCAG+TGG | - | chr3_1:84706195-84706214 | Msa0382220:CDS | 40.0% |
| GAGCTTAAAATGTTGTGGGT+TGG | - | chr3_1:84706224-84706243 | Msa0382220:CDS | 40.0% | |
| !! | CTTAAAATGTTGTGGGTTGG+AGG | - | chr3_1:84706227-84706246 | Msa0382220:CDS | 40.0% |
| ! | TGGAGGTTGATTGATAAACC+TGG | - | chr3_1:84706244-84706263 | Msa0382220:CDS | 40.0% |
| ! | GGAGGTTGATTGATAAACCT+GGG | - | chr3_1:84706245-84706264 | Msa0382220:CDS | 40.0% |
| ACCTGGGAAGCTATTTAGAT+TGG | - | chr3_1:84706261-84706280 | Msa0382220:CDS | 40.0% | |
| CCTGGGAAGCTATTTAGATT+GGG | - | chr3_1:84706262-84706281 | Msa0382220:CDS | 40.0% | |
| CACCAATCACATCCCATATA+AGG | + | chr3_1:84706337-84706356 | None:intergenic | 40.0% | |
| ! | TTTTGATGCATCCGACTCAA+AGG | + | chr3_1:84706463-84706482 | None:intergenic | 40.0% |
| TATGACCCATGTCATGTTAC+AGG | + | chr3_1:84706486-84706505 | None:intergenic | 40.0% | |
| GGACACACACGAAAGAGTAA+GGG | + | chr3_1:84700337-84700356 | None:intergenic | 45.0% | |
| GACGGTTCCATCACCATTTA+CGG | - | chr3_1:84700359-84700378 | Msa0382220:three_prime_UTR | 45.0% | |
| AGAGATATCGCAGCCGTAAA+TGG | + | chr3_1:84700375-84700394 | None:intergenic | 45.0% | |
| GCGATATCTCTCCTCACAAA+AGG | - | chr3_1:84700384-84700403 | Msa0382220:three_prime_UTR | 45.0% | |
| AAAGTAGAGAAGGTAGGACG+TGG | + | chr3_1:84700478-84700497 | None:intergenic | 45.0% | |
| CGTCCTACCTTCTCTACTTT+CGG | - | chr3_1:84700478-84700497 | Msa0382220:three_prime_UTR | 45.0% | |
| GTCCTACCTTCTCTACTTTC+GGG | - | chr3_1:84700479-84700498 | Msa0382220:three_prime_UTR | 45.0% | |
| ! | GCAGTCTGGAAGGTTAGTTA+TGG | + | chr3_1:84700523-84700542 | None:intergenic | 45.0% |
| CGCCATAATCAAATGCAGTC+TGG | + | chr3_1:84700537-84700556 | None:intergenic | 45.0% | |
| ACTGCATTTGATTATGGCGG+CGG | - | chr3_1:84700538-84700557 | Msa0382220:three_prime_UTR | 45.0% | |
| GGACACAGTAGGTGTTCAAT+CGG | + | chr3_1:84700634-84700653 | None:intergenic | 45.0% | |
| ! | AGAGGGTTCAAGTTCAATGG+TGG | + | chr3_1:84700675-84700694 | None:intergenic | 45.0% |
| ! | CTCAGAGGGTTCAAGTTCAA+TGG | + | chr3_1:84700678-84700697 | None:intergenic | 45.0% |
| CTTGAACCCTCTGAGCAATT+AGG | - | chr3_1:84700683-84700702 | Msa0382220:three_prime_UTR | 45.0% | |
| GAGAAGACCTAATTGCTCAG+AGG | + | chr3_1:84700693-84700712 | None:intergenic | 45.0% | |
| !! | AGGTTTGTTGCGAAGATCGA+CGG | + | chr3_1:84700753-84700772 | None:intergenic | 45.0% |
| TGCAGCATTTGAAGGAGTTG+AGG | - | chr3_1:84700856-84700875 | Msa0382220:three_prime_UTR | 45.0% | |
| CATTGACGGAATGATGAAGC+TGG | + | chr3_1:84700925-84700944 | None:intergenic | 45.0% | |
| ATCGTTGCCTTATCCACCTT+CGG | - | chr3_1:84701140-84701159 | Msa0382220:intron | 45.0% | |
| !! | GTTGGTAAAGTAGGTACCGA+AGG | + | chr3_1:84701159-84701178 | None:intergenic | 45.0% |
| TTACTCAGCAACTAAAGCCG+AGG | - | chr3_1:84701366-84701385 | Msa0382220:CDS | 45.0% | |
| TACTCAGCAACTAAAGCCGA+GGG | - | chr3_1:84701367-84701386 | Msa0382220:CDS | 45.0% | |
| AATAACCAATCCCTCACCCT+CGG | + | chr3_1:84701386-84701405 | None:intergenic | 45.0% | |
| !! | GGGTGAGGGATTGGTTATTA+AGG | - | chr3_1:84701387-84701406 | Msa0382220:CDS | 45.0% |
| ! | ATACGCCCTAGCAGCATTTT+TGG | - | chr3_1:84701442-84701461 | Msa0382220:CDS | 45.0% |
| CAGGTCCAAAAATGCTGCTA+GGG | + | chr3_1:84701450-84701469 | None:intergenic | 45.0% | |
| TGGACCTGGTGATAAACTGT+TGG | - | chr3_1:84701462-84701481 | Msa0382220:intron | 45.0% | |
| GTGCCGTGATATGGAAAAAC+TGG | - | chr3_1:84701707-84701726 | Msa0382220:intron | 45.0% | |
| TGCCATCACCAACAATGAAC+TGG | + | chr3_1:84701821-84701840 | None:intergenic | 45.0% | |
| AGCTCGATCAGCACATATGT+GGG | + | chr3_1:84701886-84701905 | None:intergenic | 45.0% | |
| ACCGTTTCAGAAAAAGCTGC+AGG | - | chr3_1:84701921-84701940 | Msa0382220:CDS | 45.0% | |
| TTCAGAAAAAGCTGCAGGAG+AGG | - | chr3_1:84701926-84701945 | Msa0382220:CDS | 45.0% | |
| TCTATCTCAGGGACAAACTC+AGG | - | chr3_1:84702262-84702281 | Msa0382220:intron | 45.0% | |
| CTATCTCAGGGACAAACTCA+GGG | - | chr3_1:84702263-84702282 | Msa0382220:intron | 45.0% | |
| CAATCACCCTCAGTTTGAAC+GGG | - | chr3_1:84702309-84702328 | Msa0382220:intron | 45.0% | |
| AATCACCCTCAGTTTGAACG+GGG | - | chr3_1:84702310-84702329 | Msa0382220:intron | 45.0% | |
| ATCTTTATGCTTGGCCTGCA+AGG | + | chr3_1:84703693-84703712 | None:intergenic | 45.0% | |
| CATGCCAATTGCACATTTGG+TGG | - | chr3_1:84703728-84703747 | Msa0382220:intron | 45.0% | |
| CACTCCACCAAATGTGCAAT+TGG | + | chr3_1:84703735-84703754 | None:intergenic | 45.0% | |
| ! | CAATTGCACATTTGGTGGAG+TGG | - | chr3_1:84703733-84703752 | Msa0382220:intron | 45.0% |
| GAGTGGATATATAGGCTGCT+TGG | - | chr3_1:84703750-84703769 | Msa0382220:intron | 45.0% | |
| ! | GAGGCACCTTCATTCCATAT+GGG | + | chr3_1:84703776-84703795 | None:intergenic | 45.0% |
| ! | TGAGGCACCTTCATTCCATA+TGG | + | chr3_1:84703777-84703796 | None:intergenic | 45.0% |
| !! | GTATGATGGGTGCATAGTCA+AGG | + | chr3_1:84703869-84703888 | None:intergenic | 45.0% |
| ! | CAGAACCTGTAGAGGTATGA+TGG | + | chr3_1:84703883-84703902 | None:intergenic | 45.0% |
| AAACGTCACAGAACCTGTAG+AGG | + | chr3_1:84703891-84703910 | None:intergenic | 45.0% | |
| !! | TTTTCTTGCAGGAGGGCATA+CGG | - | chr3_1:84704251-84704270 | Msa0382220:CDS | 45.0% |
| ! | TGATTTTCGGCCCTCAAATG+TGG | + | chr3_1:84704295-84704314 | None:intergenic | 45.0% |
| GCAGGAAGTTGCAGTAGTTT+AGG | - | chr3_1:84704589-84704608 | Msa0382220:intron | 45.0% | |
| TCAGTGTAACCTGCTAATGC+TGG | - | chr3_1:84704862-84704881 | Msa0382220:intron | 45.0% | |
| CAGTGTAACCTGCTAATGCT+GGG | - | chr3_1:84704863-84704882 | Msa0382220:intron | 45.0% | |
| ATACAACTCCCAGCATTAGC+AGG | + | chr3_1:84704874-84704893 | None:intergenic | 45.0% | |
| AGTGCAATGTGTCCAATAGC+TGG | + | chr3_1:84705368-84705387 | None:intergenic | 45.0% | |
| CTTTCTCAGTTGCCTCATCT+TGG | - | chr3_1:84705510-84705529 | Msa0382220:CDS | 45.0% | |
| CCCTTGCAGAAGGGAATAAT+TGG | - | chr3_1:84705558-84705577 | Msa0382220:intron | 45.0% | |
| CCCAATTATTCCCTTCTGCA+AGG | + | chr3_1:84705562-84705581 | None:intergenic | 45.0% | |
| AAGTTTGAATCCACGACCTC+AGG | + | chr3_1:84705645-84705664 | None:intergenic | 45.0% | |
| TCTTAAGTGAAAAGGCTCCC+AGG | + | chr3_1:84705727-84705746 | None:intergenic | 45.0% | |
| TCGCTTTCTCTCATGTTGTG+TGG | - | chr3_1:84705768-84705787 | Msa0382220:CDS | 45.0% | |
| TGATACAGGGAATTCCAACG+TGG | + | chr3_1:84706072-84706091 | None:intergenic | 45.0% | |
| ! | TGTAAACTTGCTCGGAGTAG+AGG | - | chr3_1:84706152-84706171 | Msa0382220:CDS | 45.0% |
| CCCAATCTAAATAGCTTCCC+AGG | + | chr3_1:84706265-84706284 | None:intergenic | 45.0% | |
| GTTTGCCGATGCCCTTATAT+GGG | - | chr3_1:84706322-84706341 | Msa0382220:CDS | 45.0% | |
| ! | CACATCCCATATAAGGGCAT+CGG | + | chr3_1:84706330-84706349 | None:intergenic | 45.0% |
| GCCCTTATATGGGATGTGAT+TGG | - | chr3_1:84706332-84706351 | Msa0382220:CDS | 45.0% | |
| CGGACACACACGAAAGAGTA+AGG | + | chr3_1:84700338-84700357 | None:intergenic | 50.0% | |
| !! | AAATGGTGATGGAACCGTCG+CGG | + | chr3_1:84700358-84700377 | None:intergenic | 50.0% |
| ATCGCAGCCGTAAATGGTGA+TGG | + | chr3_1:84700369-84700388 | None:intergenic | 50.0% | |
| !! | GGCTTGCAGTTGGTGAATCT+CGG | + | chr3_1:84700442-84700461 | None:intergenic | 50.0% |
| CACCCGAAAGTAGAGAAGGT+AGG | + | chr3_1:84700484-84700503 | None:intergenic | 50.0% | |
| CTCGGTCAAGCTTTACACTC+CGG | - | chr3_1:84700710-84700729 | Msa0382220:three_prime_UTR | 50.0% | |
| GGAGACATATTGAGCACGAC+CGG | + | chr3_1:84700732-84700751 | None:intergenic | 50.0% | |
| !! | GTAGGTACCGAAGGTGGATA+AGG | + | chr3_1:84701150-84701169 | None:intergenic | 50.0% |
| !! | GGTAAAGTAGGTACCGAAGG+TGG | + | chr3_1:84701156-84701175 | None:intergenic | 50.0% |
| TAGGGCGTATGCAACATGTC+AGG | + | chr3_1:84701432-84701451 | None:intergenic | 50.0% | |
| CCAGGTCCAAAAATGCTGCT+AGG | + | chr3_1:84701451-84701470 | None:intergenic | 50.0% | |
| !! | CCTAGCAGCATTTTTGGACC+TGG | - | chr3_1:84701448-84701467 | Msa0382220:CDS | 50.0% |
| GGCACCAACAGTTTATCACC+AGG | + | chr3_1:84701469-84701488 | None:intergenic | 50.0% | |
| ! | TTGGTTGATGCTGCAAAGGC+AGG | - | chr3_1:84701493-84701512 | Msa0382220:intron | 50.0% |
| ! | TGGTTGATGCTGCAAAGGCA+GGG | - | chr3_1:84701494-84701513 | Msa0382220:intron | 50.0% |
| TGCAAAGGCAGGGAAATCCA+AGG | - | chr3_1:84701504-84701523 | Msa0382220:intron | 50.0% | |
| GAGCTCGATCAGCACATATG+TGG | + | chr3_1:84701887-84701906 | None:intergenic | 50.0% | |
| ! | TGATCGAGCTCTAGCTTCAG+AGG | - | chr3_1:84701896-84701915 | Msa0382220:CDS | 50.0% |
| ! | GATCGAGCTCTAGCTTCAGA+GGG | - | chr3_1:84701897-84701916 | Msa0382220:CDS | 50.0% |
| TTGTTAGGATGTCAGCCCAC+TGG | + | chr3_1:84702218-84702237 | None:intergenic | 50.0% | |
| ! | GTGTCTGACAAGCTTGCTCT+TGG | - | chr3_1:84702285-84702304 | Msa0382220:intron | 50.0% |
| ATCACCCTCAGTTTGAACGG+GGG | - | chr3_1:84702311-84702330 | Msa0382220:intron | 50.0% | |
| ATAGCCCCCGTTCAAACTGA+GGG | + | chr3_1:84702318-84702337 | None:intergenic | 50.0% | |
| AATAGCCCCCGTTCAAACTG+AGG | + | chr3_1:84702319-84702338 | None:intergenic | 50.0% | |
| GCTGGCATGTGACTATACTG+AGG | - | chr3_1:84703017-84703036 | Msa0382220:CDS | 50.0% | |
| TATAGGCTGCTTGGCCCATA+TGG | - | chr3_1:84703759-84703778 | Msa0382220:intron | 50.0% | |
| GCTTGGCCCATATGGAATGA+AGG | - | chr3_1:84703767-84703786 | Msa0382220:intron | 50.0% | |
| ATTCTTGAAGGGGTCAGCTG+AGG | + | chr3_1:84703795-84703814 | None:intergenic | 50.0% | |
| ! | TGATGGGTGCATAGTCAAGG+CGG | + | chr3_1:84703866-84703885 | None:intergenic | 50.0% |
| TGCACCCATCATACCTCTAC+AGG | - | chr3_1:84703875-84703894 | Msa0382220:intron | 50.0% | |
| GAACACCCCGTACAAGAAGT+AGG | + | chr3_1:84704205-84704224 | None:intergenic | 50.0% | |
| ACGTGTCAGCAACTGCAATG+TGG | + | chr3_1:84704938-84704957 | None:intergenic | 50.0% | |
| CAGTTGCTGACACGTTGCTT+TGG | - | chr3_1:84704943-84704962 | Msa0382220:intron | 50.0% | |
| ! | TGCTGACACGTTGCTTTGGA+AGG | - | chr3_1:84704947-84704966 | Msa0382220:intron | 50.0% |
| TCTGCTCGTTCTTAGCTTCC+TGG | - | chr3_1:84705706-84705725 | Msa0382220:intron | 50.0% | |
| CTGCTCGTTCTTAGCTTCCT+GGG | - | chr3_1:84705707-84705726 | Msa0382220:intron | 50.0% | |
| GGTTTGCCGATGCCCTTATA+TGG | - | chr3_1:84706321-84706340 | Msa0382220:CDS | 50.0% | |
| TGGCAAAGGCTCCTTTGAGT+CGG | - | chr3_1:84706449-84706468 | Msa0382220:five_prime_UTR | 50.0% | |
| TCTTTCGTGTGTGTCCGCGA+CGG | - | chr3_1:84700341-84700360 | Msa0382220:three_prime_UTR | 55.0% | |
| ! | GACGACAGTCGCCTTTTGTG+AGG | + | chr3_1:84700398-84700417 | None:intergenic | 55.0% |
| AAAGGCGACTGTCGTCGCAA+CGG | - | chr3_1:84700402-84700421 | Msa0382220:three_prime_UTR | 55.0% | |
| !! | GCAGTTGGTGAATCTCGGTG+CGG | + | chr3_1:84700437-84700456 | None:intergenic | 55.0% |
| TCACCAACTGCAAGCCTCAG+CGG | - | chr3_1:84700446-84700465 | Msa0382220:three_prime_UTR | 55.0% | |
| CGGACACCCGAAAGTAGAGA+AGG | + | chr3_1:84700488-84700507 | None:intergenic | 55.0% | |
| GCATTTGATTATGGCGGCGG+CGG | - | chr3_1:84700541-84700560 | Msa0382220:three_prime_UTR | 55.0% | |
| GAAAGGTGGTGTGTGGTCAC+CGG | - | chr3_1:84700566-84700585 | Msa0382220:three_prime_UTR | 55.0% | |
| !! | TGTGTCCGCATCGCCGATTT+GGG | - | chr3_1:84700647-84700666 | Msa0382220:three_prime_UTR | 55.0% |
| TGGATCCCAAATCGGCGATG+CGG | + | chr3_1:84700655-84700674 | None:intergenic | 55.0% | |
| AGCAACTAAAGCCGAGGGTG+AGG | - | chr3_1:84701372-84701391 | Msa0382220:CDS | 55.0% | |
| GCAACTAAAGCCGAGGGTGA+GGG | - | chr3_1:84701373-84701392 | Msa0382220:CDS | 55.0% | |
| TAAAGCCGAGGGTGAGGGAT+TGG | - | chr3_1:84701378-84701397 | Msa0382220:CDS | 55.0% | |
| TTTGATTATGGCGGCGGCGG+AGG | - | chr3_1:84700544-84700563 | Msa0382220:three_prime_UTR | 60.0% | |
| AGCAGCAAAGCCTCGTCCTC+CGG | + | chr3_1:84700588-84700607 | None:intergenic | 60.0% | |
| ATCGGCGATGCGGACACAGT+AGG | + | chr3_1:84700645-84700664 | None:intergenic | 60.0% | |
| ! | CTGTGTCCGCATCGCCGATT+TGG | - | chr3_1:84700646-84700665 | Msa0382220:three_prime_UTR | 60.0% |
| ! | TCTTGCAGGAGGGCATACGG+AGG | - | chr3_1:84704254-84704273 | Msa0382220:CDS | 60.0% |
| TTATGGCGGCGGCGGAGGAA+AGG | - | chr3_1:84700549-84700568 | Msa0382220:three_prime_UTR | 65.0% | |
| GGCGGAGGAAAGGTGGTGTG+TGG | - | chr3_1:84700559-84700578 | Msa0382220:three_prime_UTR | 65.0% | |
| AGGTGGTGTGTGGTCACCGG+AGG | - | chr3_1:84700569-84700588 | Msa0382220:three_prime_UTR | 65.0% | |
| TGTGTGGTCACCGGAGGACG+AGG | - | chr3_1:84700575-84700594 | Msa0382220:three_prime_UTR | 65.0% | |
| GCGCCGCTGAGGCTTGCAGT+TGG | + | chr3_1:84700452-84700471 | None:intergenic | 70.0% | |
| GGACGTGGATCGCGCCGCTG+AGG | + | chr3_1:84700463-84700482 | None:intergenic | 75.0% | |
| TGGCGGCGGCGGAGGAAAGG+TGG | - | chr3_1:84700552-84700571 | Msa0382220:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 84700285 | 84706626 | 84700285 | ID=Msa0382220;Name=Msa0382220 |
| chr3_1 | mRNA | 84700285 | 84706626 | 84700285 | ID=Msa0382220-mRNA-1;Parent=Msa0382220;Name=Msa0382220-mRNA-1;_AED=0.07;_eAED=0.07;_QI=246|1|1|1|0.91|0.84|13|627|562 |
| chr3_1 | exon | 84700285 | 84701054 | 84700285 | ID=Msa0382220-mRNA-1:exon:22125;Parent=Msa0382220-mRNA-1 |
| chr3_1 | exon | 84701150 | 84701216 | 84701150 | ID=Msa0382220-mRNA-1:exon:22124;Parent=Msa0382220-mRNA-1 |
| chr3_1 | exon | 84701316 | 84701472 | 84701316 | ID=Msa0382220-mRNA-1:exon:22123;Parent=Msa0382220-mRNA-1 |
| chr3_1 | exon | 84701791 | 84701965 | 84701791 | ID=Msa0382220-mRNA-1:exon:22122;Parent=Msa0382220-mRNA-1 |
| chr3_1 | exon | 84702538 | 84702649 | 84702538 | ID=Msa0382220-mRNA-1:exon:22121;Parent=Msa0382220-mRNA-1 |
| chr3_1 | exon | 84703015 | 84703213 | 84703015 | ID=Msa0382220-mRNA-1:exon:22120;Parent=Msa0382220-mRNA-1 |
| chr3_1 | exon | 84704232 | 84704311 | 84704232 | ID=Msa0382220-mRNA-1:exon:22119;Parent=Msa0382220-mRNA-1 |
| chr3_1 | exon | 84704964 | 84705089 | 84704964 | ID=Msa0382220-mRNA-1:exon:22118;Parent=Msa0382220-mRNA-1 |
| chr3_1 | exon | 84705386 | 84705556 | 84705386 | ID=Msa0382220-mRNA-1:exon:22117;Parent=Msa0382220-mRNA-1 |
| chr3_1 | exon | 84705750 | 84705883 | 84705750 | ID=Msa0382220-mRNA-1:exon:22116;Parent=Msa0382220-mRNA-1 |
| chr3_1 | exon | 84705961 | 84706050 | 84705961 | ID=Msa0382220-mRNA-1:exon:22115;Parent=Msa0382220-mRNA-1 |
| chr3_1 | exon | 84706126 | 84706423 | 84706126 | ID=Msa0382220-mRNA-1:exon:22114;Parent=Msa0382220-mRNA-1 |
| chr3_1 | exon | 84706444 | 84706626 | 84706444 | ID=Msa0382220-mRNA-1:exon:22113;Parent=Msa0382220-mRNA-1 |
| chr3_1 | five_prime_UTR | 84706444 | 84706626 | 84706444 | ID=Msa0382220-mRNA-1:five_prime_utr;Parent=Msa0382220-mRNA-1 |
| chr3_1 | five_prime_UTR | 84706361 | 84706423 | 84706361 | ID=Msa0382220-mRNA-1:five_prime_utr;Parent=Msa0382220-mRNA-1 |
| chr3_1 | CDS | 84706126 | 84706360 | 84706126 | ID=Msa0382220-mRNA-1:cds;Parent=Msa0382220-mRNA-1 |
| chr3_1 | CDS | 84705961 | 84706050 | 84705961 | ID=Msa0382220-mRNA-1:cds;Parent=Msa0382220-mRNA-1 |
| chr3_1 | CDS | 84705750 | 84705883 | 84705750 | ID=Msa0382220-mRNA-1:cds;Parent=Msa0382220-mRNA-1 |
| chr3_1 | CDS | 84705386 | 84705556 | 84705386 | ID=Msa0382220-mRNA-1:cds;Parent=Msa0382220-mRNA-1 |
| chr3_1 | CDS | 84704964 | 84705089 | 84704964 | ID=Msa0382220-mRNA-1:cds;Parent=Msa0382220-mRNA-1 |
| chr3_1 | CDS | 84704232 | 84704311 | 84704232 | ID=Msa0382220-mRNA-1:cds;Parent=Msa0382220-mRNA-1 |
| chr3_1 | CDS | 84703015 | 84703213 | 84703015 | ID=Msa0382220-mRNA-1:cds;Parent=Msa0382220-mRNA-1 |
| chr3_1 | CDS | 84702538 | 84702649 | 84702538 | ID=Msa0382220-mRNA-1:cds;Parent=Msa0382220-mRNA-1 |
| chr3_1 | CDS | 84701791 | 84701965 | 84701791 | ID=Msa0382220-mRNA-1:cds;Parent=Msa0382220-mRNA-1 |
| chr3_1 | CDS | 84701316 | 84701472 | 84701316 | ID=Msa0382220-mRNA-1:cds;Parent=Msa0382220-mRNA-1 |
| chr3_1 | CDS | 84701150 | 84701216 | 84701150 | ID=Msa0382220-mRNA-1:cds;Parent=Msa0382220-mRNA-1 |
| chr3_1 | CDS | 84700912 | 84701054 | 84700912 | ID=Msa0382220-mRNA-1:cds;Parent=Msa0382220-mRNA-1 |
| chr3_1 | three_prime_UTR | 84700285 | 84700911 | 84700285 | ID=Msa0382220-mRNA-1:three_prime_utr;Parent=Msa0382220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
