Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046840 | sp|Q67ZE1|HSDD2_ARATH | 66.254 | 566 | 182 | 2 | 2 | 567 | 5 | 561 | 0.0 | 784 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034530 | Msa0046840 | 0.810405 | 1.171640e-50 | -8.615850e-47 |
| Msa0046840 | Msa0129760 | 0.800603 | 1.333963e-48 | -8.615850e-47 |
| Msa0046840 | Msa0260040 | 0.809885 | 1.516704e-50 | -8.615850e-47 |
| Msa0046840 | Msa0382220 | 0.991103 | 6.585294e-186 | -8.615850e-47 |
| Msa0046840 | Msa0687370 | 0.806934 | 6.462788e-50 | -8.615850e-47 |
| Msa0046840 | Msa1050260 | 0.815932 | 7.173273e-52 | -8.615850e-47 |
| Msa0046840 | Msa1435110 | 0.935940 | 3.836070e-97 | -8.615850e-47 |
| Msa0046840 | Msa1439740 | 0.928599 | 2.299297e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046840 | MtrunA17_Chr3g0136511 | 94.728 | 569 | 23 | 2 | 1 | 569 | 1 | 562 | 0.0 | 1096 |
| Msa0046840 | MtrunA17_Chr4g0033711 | 41.558 | 539 | 289 | 8 | 9 | 544 | 16 | 531 | 1.85e-127 | 385 |
| Msa0046840 | MtrunA17_Chr1g0157471 | 31.443 | 388 | 228 | 11 | 10 | 379 | 15 | 382 | 3.37e-39 | 149 |
| Msa0046840 | MtrunA17_Chr3g0133771 | 27.606 | 355 | 215 | 15 | 10 | 359 | 5 | 322 | 9.19e-21 | 93.6 |
| Msa0046840 | MtrunA17_Chr8g0348131 | 33.333 | 177 | 96 | 5 | 375 | 542 | 65 | 228 | 1.58e-13 | 71.2 |
| Msa0046840 | MtrunA17_Chr2g0314601 | 27.823 | 248 | 155 | 8 | 1 | 238 | 1 | 234 | 1.19e-12 | 70.9 |
| Msa0046840 | MtrunA17_Chr4g0005701 | 30.319 | 188 | 115 | 4 | 385 | 565 | 18 | 196 | 1.74e-12 | 67.0 |
| Msa0046840 | MtrunA17_Chr8g0387631 | 30.851 | 188 | 103 | 5 | 385 | 563 | 69 | 238 | 2.15e-12 | 67.8 |
| Msa0046840 | MtrunA17_Chr8g0359401 | 27.016 | 248 | 157 | 8 | 1 | 238 | 1 | 234 | 3.19e-12 | 69.3 |
| Msa0046840 | MtrunA17_Chr5g0423551 | 27.049 | 244 | 152 | 9 | 11 | 242 | 6 | 235 | 3.24e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046840 | AT2G26260.1 | 66.254 | 566 | 182 | 2 | 2 | 567 | 5 | 561 | 0.0 | 784 |
| Msa0046840 | AT2G26260.2 | 66.388 | 479 | 152 | 2 | 89 | 567 | 1 | 470 | 0.0 | 660 |
| Msa0046840 | AT1G47290.2 | 64.097 | 454 | 136 | 4 | 6 | 456 | 9 | 438 | 0.0 | 596 |
| Msa0046840 | AT1G47290.1 | 70.350 | 371 | 103 | 1 | 6 | 376 | 9 | 372 | 0.0 | 554 |
| Msa0046840 | AT2G43420.1 | 39.572 | 561 | 314 | 10 | 9 | 562 | 15 | 557 | 2.03e-128 | 387 |
| Msa0046840 | AT2G33630.1 | 29.534 | 386 | 236 | 9 | 10 | 379 | 15 | 380 | 3.45e-35 | 139 |
| Msa0046840 | AT1G78570.1 | 28.685 | 251 | 149 | 9 | 1 | 238 | 1 | 234 | 1.74e-13 | 73.9 |
| Msa0046840 | AT4G33360.2 | 25.305 | 328 | 194 | 13 | 5 | 322 | 11 | 297 | 1.55e-12 | 68.9 |
| Msa0046840 | AT4G11220.1 | 29.255 | 188 | 106 | 5 | 385 | 563 | 80 | 249 | 2.49e-12 | 68.2 |
| Msa0046840 | AT1G53500.1 | 27.197 | 239 | 150 | 8 | 10 | 238 | 12 | 236 | 6.96e-12 | 68.9 |
| Msa0046840 | AT3G61560.1 | 30.622 | 209 | 119 | 7 | 374 | 559 | 38 | 243 | 1.53e-11 | 65.5 |
| Msa0046840 | AT3G61560.2 | 30.622 | 209 | 119 | 7 | 374 | 559 | 38 | 243 | 1.53e-11 | 65.5 |
| Msa0046840 | AT3G14790.2 | 27.016 | 248 | 157 | 8 | 1 | 238 | 4 | 237 | 1.57e-11 | 67.8 |
| Msa0046840 | AT3G14790.1 | 27.016 | 248 | 157 | 8 | 1 | 238 | 1 | 234 | 1.73e-11 | 67.4 |
Find 186 sgRNAs with CRISPR-Local
Find 418 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTGCAGAAGGGAATAAT+TGG | 0.171596 | 1_1:-79259013 | Msa0046840:CDS |
| CTTTGAAGTAACAAACTTCT+TGG | 0.203034 | 1_1:+79258603 | None:intergenic |
| CGTCCTACCTTCTCTACTTT+CGG | 0.230913 | 1_1:-79264092 | Msa0046840:intron |
| GGCATATTTCATTACGAATA+TGG | 0.231821 | 1_1:-79261973 | Msa0046840:CDS |
| TCTGCTCGTTCTTAGCTTCC+TGG | 0.240047 | 1_1:-79258865 | Msa0046840:CDS |
| CACCAATCACATCCCATATA+AGG | 0.242796 | 1_1:+79258237 | None:intergenic |
| ATGAACTCCCAAAACTTTAT+AGG | 0.247483 | 1_1:+79261948 | None:intergenic |
| GGTTTGCCGATGCCCTTATA+TGG | 0.252412 | 1_1:-79258250 | Msa0046840:three_prime_UTR |
| GGAGTTCATGTCTCTAATTT+TGG | 0.253874 | 1_1:-79261934 | Msa0046840:CDS |
| TTCCAGACTGCATTTGATTA+TGG | 0.254715 | 1_1:-79264038 | Msa0046840:exon |
| AACAAACCTCAACTCTTAAA+AGG | 0.261492 | 1_1:-79263806 | Msa0046840:intron |
| TATGACCCATGTCATGTTAC+AGG | 0.265492 | 1_1:+79258088 | None:intergenic |
| GTCCTACCTTCTCTACTTTC+GGG | 0.300281 | 1_1:-79264091 | Msa0046840:intron |
| ATATGGAACCTATAAAGTTT+TGG | 0.301633 | 1_1:-79261956 | Msa0046840:CDS |
| CTTTCTCAGTTGCCTCATCT+TGG | 0.333806 | 1_1:-79259061 | Msa0046840:CDS |
| CTGTGTCCGCATCGCCGATT+TGG | 0.334227 | 1_1:-79263924 | Msa0046840:CDS |
| GGATTGGTTATTAAGGCTAA+TGG | 0.351234 | 1_1:-79263177 | Msa0046840:CDS |
| GGGTGAGGGATTGGTTATTA+AGG | 0.352725 | 1_1:-79263184 | Msa0046840:CDS |
| ATGTGATTGGTGATTATCTT+TGG | 0.355141 | 1_1:-79258226 | Msa0046840:three_prime_UTR |
| CTTGAACCCTCTGAGCAATT+AGG | 0.355569 | 1_1:-79263887 | Msa0046840:CDS |
| TAGTTGTTTAAAGAAGAATT+TGG | 0.361224 | 1_1:+79263671 | None:intergenic |
| TTCTCTTACCAGTTCATTGT+TGG | 0.367722 | 1_1:-79262761 | Msa0046840:intron |
| TATCATGCCAATTGCACATT+TGG | 0.370214 | 1_1:-79260846 | Msa0046840:CDS |
| ACCTGGGAAGCTATTTAGAT+TGG | 0.370608 | 1_1:-79258310 | Msa0046840:three_prime_UTR |
| GACGGTTCCATCACCATTTA+CGG | 0.371919 | 1_1:-79264211 | Msa0046840:five_prime_UTR |
| CTTAAGAACTTGTATACTAT+AGG | 0.373557 | 1_1:-79258831 | Msa0046840:intron |
| AGAGATATCGCAGCCGTAAA+TGG | 0.375439 | 1_1:+79264198 | None:intergenic |
| ACTCCTATCGGGAATTTAAT+CGG | 0.378975 | 1_1:-79258271 | Msa0046840:three_prime_UTR |
| TTAATCTCTGCAGCATTTGA+AGG | 0.382000 | 1_1:-79263722 | Msa0046840:intron |
| TCGATCGGTTTATTCATTCA+TGG | 0.385542 | 1_1:-79259491 | Msa0046840:CDS |
| GGAATTCATGGAATTCATAA+TGG | 0.386447 | 1_1:-79263460 | Msa0046840:CDS |
| TTACTTCAAAGATTGATTGA+TGG | 0.390041 | 1_1:-79258591 | Msa0046840:exon |
| TGCTTCACCTTCAACATTGA+CGG | 0.391665 | 1_1:+79263634 | None:intergenic |
| TATAGGCTGCTTGGCCCATA+TGG | 0.393052 | 1_1:-79260812 | Msa0046840:CDS |
| TCCAAAGCTTCTGTATATCT+TGG | 0.393295 | 1_1:-79260231 | Msa0046840:CDS |
| TTAAAATTTGTCACTCCTAT+CGG | 0.395432 | 1_1:-79258283 | Msa0046840:three_prime_UTR |
| CAATAATTGTACAATGATAC+AGG | 0.395876 | 1_1:+79258488 | None:intergenic |
| TCCAAGATATACAGAAGCTT+TGG | 0.397177 | 1_1:+79260230 | None:intergenic |
| CACTCCACCAAATGTGCAAT+TGG | 0.401026 | 1_1:+79260839 | None:intergenic |
| TGAGGCACCTTCATTCCATA+TGG | 0.412154 | 1_1:+79260797 | None:intergenic |
| GATGTGAGTCTTATTCTTGA+AGG | 0.416433 | 1_1:+79260767 | None:intergenic |
| CATCATTCCGTCAATGTTGA+AGG | 0.420093 | 1_1:-79263641 | Msa0046840:intron |
| CATGCCAATTGCACATTTGG+TGG | 0.425591 | 1_1:-79260843 | Msa0046840:CDS |
| TGTGTCCGCATCGCCGATTT+GGG | 0.426692 | 1_1:-79263923 | Msa0046840:CDS |
| TAAACTGTTGGTGCCTTCAT+TGG | 0.429069 | 1_1:-79263097 | Msa0046840:CDS |
| TCTGAGCAATTAGGTCTTCT+CGG | 0.432974 | 1_1:-79263878 | Msa0046840:CDS |
| ACCAATCACATCCCATATAA+GGG | 0.435378 | 1_1:+79258238 | None:intergenic |
| GATTGGTTATTAAGGCTAAT+GGG | 0.435448 | 1_1:-79263176 | Msa0046840:CDS |
| AAGAATTTGGAGCAGCCATA+TGG | 0.438027 | 1_1:+79263684 | None:intergenic |
| TTGGTTGATGCTGCAAAGGC+AGG | 0.438220 | 1_1:-79263078 | Msa0046840:CDS |
| CTCAGAGGGTTCAAGTTCAA+TGG | 0.441397 | 1_1:+79263895 | None:intergenic |
| CGGACACACACGAAAGAGTA+AGG | 0.444460 | 1_1:+79264235 | None:intergenic |
| ATCGTTGCCTTATCCACCTT+CGG | 0.448632 | 1_1:-79263431 | Msa0046840:CDS |
| ATTTGGTGGAGTGGATATAT+AGG | 0.449440 | 1_1:-79260829 | Msa0046840:CDS |
| CAGAACCTGTAGAGGTATGA+TGG | 0.450369 | 1_1:+79260691 | None:intergenic |
| TAAAATTTGTCACTCCTATC+GGG | 0.453788 | 1_1:-79258282 | Msa0046840:three_prime_UTR |
| AGCAGCAAAGCCTCGTCCTC+CGG | 0.454833 | 1_1:+79263985 | None:intergenic |
| GTTTGCCGATGCCCTTATAT+GGG | 0.455839 | 1_1:-79258249 | Msa0046840:three_prime_UTR |
| CTGCTCGTTCTTAGCTTCCT+GGG | 0.460258 | 1_1:-79258864 | Msa0046840:CDS |
| ATACAAGTTCTTAAGTGAAA+AGG | 0.460456 | 1_1:+79258839 | None:intergenic |
| CCTGGGAAGCTATTTAGATT+GGG | 0.461171 | 1_1:-79258309 | Msa0046840:three_prime_UTR |
| TACCAGTTCATTGTTGGTGA+TGG | 0.464034 | 1_1:-79262755 | Msa0046840:intron |
| TTCAATGGTGGATCCCAAAT+CGG | 0.464651 | 1_1:+79263910 | None:intergenic |
| AAAGAGAGCTTAAAATGTTG+TGG | 0.465718 | 1_1:-79258352 | Msa0046840:three_prime_UTR |
| TAAAGCCGAGGGTGAGGGAT+TGG | 0.474854 | 1_1:-79263193 | Msa0046840:CDS |
| TTTGATTATGGCGGCGGCGG+AGG | 0.475500 | 1_1:-79264026 | Msa0046840:exon |
| GTAGGTACCGAAGGTGGATA+AGG | 0.477922 | 1_1:+79263424 | None:intergenic |
| CCCAATCTAAATAGCTTCCC+AGG | 0.481548 | 1_1:+79258309 | None:intergenic |
| GTATATCTTGGAAGTGGAAG+AGG | 0.485555 | 1_1:-79260219 | Msa0046840:intron |
| CAGTTGCTGACACGTTGCTT+TGG | 0.485790 | 1_1:-79259628 | Msa0046840:CDS |
| CGCCATAATCAAATGCAGTC+TGG | 0.486266 | 1_1:+79264036 | None:intergenic |
| AGCAACTAAAGCCGAGGGTG+AGG | 0.494138 | 1_1:-79263199 | Msa0046840:CDS |
| AAACGAAGTGTTGGTAAAGT+AGG | 0.496968 | 1_1:+79263406 | None:intergenic |
| GGCTTGCAGTTGGTGAATCT+CGG | 0.500925 | 1_1:+79264131 | None:intergenic |
| CTTAAAATGTTGTGGGTTGG+AGG | 0.501325 | 1_1:-79258344 | Msa0046840:three_prime_UTR |
| AGGTTTGTTGCGAAGATCGA+CGG | 0.502657 | 1_1:+79263820 | None:intergenic |
| TTATAAAATAAGAAATGTCA+TGG | 0.504092 | 1_1:+79257971 | None:intergenic |
| TGCACCCATCATACCTCTAC+AGG | 0.507092 | 1_1:-79260696 | Msa0046840:intron |
| GCATTTGATTATGGCGGCGG+CGG | 0.508585 | 1_1:-79264029 | Msa0046840:exon |
| GAAAGGTGGTGTGTGGTCAC+CGG | 0.510184 | 1_1:-79264004 | Msa0046840:CDS |
| AAGATATACAGAAGCTTTGG+AGG | 0.510237 | 1_1:+79260233 | None:intergenic |
| TCGAATCATATCCACATTTG+AGG | 0.511233 | 1_1:-79260290 | Msa0046840:CDS |
| GAGCTTAAAATGTTGTGGGT+TGG | 0.511327 | 1_1:-79258347 | Msa0046840:three_prime_UTR |
| TGCTGACACGTTGCTTTGGA+AGG | 0.511938 | 1_1:-79259624 | Msa0046840:CDS |
| TGTGTGGTCACCGGAGGACG+AGG | 0.512379 | 1_1:-79263995 | Msa0046840:CDS |
| GCGATATCTCTCCTCACAAA+AGG | 0.515045 | 1_1:-79264186 | Msa0046840:five_prime_UTR |
| AAGAGAGCTTAAAATGTTGT+GGG | 0.515659 | 1_1:-79258351 | Msa0046840:three_prime_UTR |
| ATGTGAGTCTTATTCTTGAA+GGG | 0.515692 | 1_1:+79260768 | None:intergenic |
| GCTTCTGTATATCTTGGAAG+TGG | 0.518379 | 1_1:-79260225 | Msa0046840:CDS |
| TTGAGAAAATGCCCACATCA+TGG | 0.518767 | 1_1:-79259118 | Msa0046840:CDS |
| GCAACTAAAGCCGAGGGTGA+GGG | 0.520116 | 1_1:-79263198 | Msa0046840:CDS |
| TTTGCAGCATCAACCAATGA+AGG | 0.520481 | 1_1:+79263084 | None:intergenic |
| TGCAGCATTTGAAGGAGTTG+AGG | 0.521031 | 1_1:-79263714 | Msa0046840:intron |
| CCAATTATTCCCTTCTGCAA+GGG | 0.522767 | 1_1:+79259013 | None:intergenic |
| CCCAATTATTCCCTTCTGCA+AGG | 0.526936 | 1_1:+79259012 | None:intergenic |
| ACTGCATTTGATTATGGCGG+CGG | 0.527486 | 1_1:-79264032 | Msa0046840:exon |
| GAGCTCGATCAGCACATATG+TGG | 0.527742 | 1_1:+79262687 | None:intergenic |
| TGGAGGTTGATTGATAAACC+TGG | 0.528757 | 1_1:-79258327 | Msa0046840:three_prime_UTR |
| TGGAAGGTCTTGGATATCAA+AGG | 0.529691 | 1_1:-79261914 | Msa0046840:intron |
| CCTTGCAGAAGGGAATAATT+GGG | 0.540074 | 1_1:-79259012 | Msa0046840:CDS |
| TTATGGCGGCGGCGGAGGAA+AGG | 0.542684 | 1_1:-79264021 | Msa0046840:CDS |
| TGGCGGCGGCGGAGGAAAGG+TGG | 0.543511 | 1_1:-79264018 | Msa0046840:CDS |
| TGAAAGTTAAAACGAAGTGT+TGG | 0.545726 | 1_1:+79263397 | None:intergenic |
| CGAATCATATCCACATTTGA+GGG | 0.546936 | 1_1:-79260289 | Msa0046840:CDS |
| CTTCTATTATACTCATCGAT+CGG | 0.547051 | 1_1:-79259506 | Msa0046840:CDS |
| CAGACTGCATTTGATTATGG+CGG | 0.547350 | 1_1:-79264035 | Msa0046840:exon |
| TTGAGCAAACATGACTCAAA+GGG | 0.547821 | 1_1:+79258200 | None:intergenic |
| CATCTTCATTTAATCCACGT+TGG | 0.548065 | 1_1:-79258516 | Msa0046840:three_prime_UTR |
| TGATTGGTGATTATCTTTGG+CGG | 0.548486 | 1_1:-79258223 | Msa0046840:three_prime_UTR |
| TTCATTGGTTGATGCTGCAA+AGG | 0.548711 | 1_1:-79263082 | Msa0046840:CDS |
| TAGGGCGTATGCAACATGTC+AGG | 0.552269 | 1_1:+79263142 | None:intergenic |
| ATTGGCATGATAACAAAGAC+AGG | 0.553368 | 1_1:+79260857 | None:intergenic |
| GTAGAAAGCTGTAAATGCTA+AGG | 0.553726 | 1_1:+79258708 | None:intergenic |
| GAGTGGATATATAGGCTGCT+TGG | 0.554338 | 1_1:-79260821 | Msa0046840:CDS |
| GGACACAGTAGGTGTTCAAT+CGG | 0.555516 | 1_1:+79263939 | None:intergenic |
| AAGACAGGGATCTTTATGCT+TGG | 0.556912 | 1_1:+79260872 | None:intergenic |
| GCAGTCTGGAAGGTTAGTTA+TGG | 0.557136 | 1_1:+79264050 | None:intergenic |
| TGTAAACTTGCTCGGAGTAG+AGG | 0.558240 | 1_1:-79258419 | Msa0046840:three_prime_UTR |
| GAATTCCATCAAAACAACAC+TGG | 0.561974 | 1_1:+79263476 | None:intergenic |
| CTTTGTAAGAGCAGTAATGA+AGG | 0.563257 | 1_1:+79259529 | None:intergenic |
| CACATCCCATATAAGGGCAT+CGG | 0.564155 | 1_1:+79258244 | None:intergenic |
| ATCGCAGCCGTAAATGGTGA+TGG | 0.564493 | 1_1:+79264204 | None:intergenic |
| TCTTTCGTGTGTGTCCGCGA+CGG | 0.564998 | 1_1:-79264229 | Msa0046840:five_prime_UTR |
| TCTTAAGTGAAAAGGCTCCC+AGG | 0.566172 | 1_1:+79258847 | None:intergenic |
| CAACTTAAGTCTAAAAGAGA+AGG | 0.566200 | 1_1:-79260258 | Msa0046840:CDS |
| GCATTAAAATCCCTTGCAGA+AGG | 0.567802 | 1_1:-79259023 | Msa0046840:CDS |
| GCGCCGCTGAGGCTTGCAGT+TGG | 0.573654 | 1_1:+79264121 | None:intergenic |
| TGGACCTGGTGATAAACTGT+TGG | 0.573810 | 1_1:-79263109 | Msa0046840:CDS |
| GCTTGGCCCATATGGAATGA+AGG | 0.577124 | 1_1:-79260804 | Msa0046840:CDS |
| TTTCACATATGTTGAAAATG+TGG | 0.577379 | 1_1:-79262717 | Msa0046840:CDS |
| TCAAAACCTGTAACATGACA+TGG | 0.578204 | 1_1:-79258094 | Msa0046840:three_prime_UTR |
| GAGGCACCTTCATTCCATAT+GGG | 0.580167 | 1_1:+79260798 | None:intergenic |
| TTTGAGCAAACATGACTCAA+AGG | 0.583039 | 1_1:+79258199 | None:intergenic |
| AGAAGACCTAATTGCTCAGA+GGG | 0.584128 | 1_1:+79263881 | None:intergenic |
| GCCCTTATATGGGATGTGAT+TGG | 0.584219 | 1_1:-79258239 | Msa0046840:three_prime_UTR |
| GGCGGAGGAAAGGTGGTGTG+TGG | 0.587912 | 1_1:-79264011 | Msa0046840:CDS |
| CACAGCAAAATTCCAAGATG+AGG | 0.589243 | 1_1:+79259049 | None:intergenic |
| TGATCGAGCTCTAGCTTCAG+AGG | 0.590757 | 1_1:-79262675 | Msa0046840:CDS |
| TGTGAGTCTTATTCTTGAAG+GGG | 0.592528 | 1_1:+79260769 | None:intergenic |
| CATTAAAATCCCTTGCAGAA+GGG | 0.592814 | 1_1:-79259022 | Msa0046840:CDS |
| AGAACCTGTAGAGGTATGAT+GGG | 0.594321 | 1_1:+79260692 | None:intergenic |
| AGCTCGATCAGCACATATGT+GGG | 0.596317 | 1_1:+79262688 | None:intergenic |
| GGAGGTTGATTGATAAACCT+GGG | 0.598447 | 1_1:-79258326 | Msa0046840:three_prime_UTR |
| GTATGATGGGTGCATAGTCA+AGG | 0.599231 | 1_1:+79260705 | None:intergenic |
| CATTGACGGAATGATGAAGC+TGG | 0.600987 | 1_1:+79263648 | None:intergenic |
| TCACCAACTGCAAGCCTCAG+CGG | 0.601878 | 1_1:-79264124 | Msa0046840:intron |
| GGACGTGGATCGCGCCGCTG+AGG | 0.602311 | 1_1:+79264110 | None:intergenic |
| AATTCCATCAAAACAACACT+GGG | 0.604281 | 1_1:+79263477 | None:intergenic |
| GGAGACATATTGAGCACGAC+CGG | 0.604728 | 1_1:+79263841 | None:intergenic |
| AATAACCAATCCCTCACCCT+CGG | 0.605731 | 1_1:+79263188 | None:intergenic |
| TTACTCAGCAACTAAAGCCG+AGG | 0.607635 | 1_1:-79263205 | Msa0046840:CDS |
| ATTCTTGAAGGGGTCAGCTG+AGG | 0.610389 | 1_1:+79260779 | None:intergenic |
| ATAATCAAATGCAGTCTGGA+AGG | 0.612641 | 1_1:+79264040 | None:intergenic |
| AGGTGGTGTGTGGTCACCGG+AGG | 0.612663 | 1_1:-79264001 | Msa0046840:CDS |
| TGGTTGATGCTGCAAAGGCA+GGG | 0.613832 | 1_1:-79263077 | Msa0046840:CDS |
| CTCGGTCAAGCTTTACACTC+CGG | 0.614278 | 1_1:-79263860 | Msa0046840:CDS |
| ATTAAGGCTAATGGGACTAG+TGG | 0.621571 | 1_1:-79263168 | Msa0046840:CDS |
| GAGAAGACCTAATTGCTCAG+AGG | 0.625054 | 1_1:+79263880 | None:intergenic |
| TGGCAAAGGCTCCTTTGAGT+CGG | 0.625999 | 1_1:-79258122 | Msa0046840:three_prime_UTR |
| CAATTGCACATTTGGTGGAG+TGG | 0.628998 | 1_1:-79260838 | Msa0046840:CDS |
| GTTGGTAAAGTAGGTACCGA+AGG | 0.630104 | 1_1:+79263415 | None:intergenic |
| AGAGGGTTCAAGTTCAATGG+TGG | 0.630912 | 1_1:+79263898 | None:intergenic |
| AAACCGATTAAATTCCCGAT+AGG | 0.632453 | 1_1:+79258268 | None:intergenic |
| GGCACCAACAGTTTATCACC+AGG | 0.633574 | 1_1:+79263105 | None:intergenic |
| CGGACACCCGAAAGTAGAGA+AGG | 0.635370 | 1_1:+79264085 | None:intergenic |
| TACTCAGCAACTAAAGCCGA+GGG | 0.636180 | 1_1:-79263204 | Msa0046840:CDS |
| GATCGAGCTCTAGCTTCAGA+GGG | 0.640107 | 1_1:-79262674 | Msa0046840:CDS |
| GGTAAAGTAGGTACCGAAGG+TGG | 0.641463 | 1_1:+79263418 | None:intergenic |
| AAAGGCGACTGTCGTCGCAA+CGG | 0.646567 | 1_1:-79264168 | Msa0046840:five_prime_UTR |
| AAACGTCACAGAACCTGTAG+AGG | 0.648903 | 1_1:+79260683 | None:intergenic |
| TGATAAGTGAAACCATGATG+TGG | 0.662199 | 1_1:+79259106 | None:intergenic |
| AGATATACAGAAGCTTTGGA+GGG | 0.663079 | 1_1:+79260234 | None:intergenic |
| ATCGGCGATGCGGACACAGT+AGG | 0.665728 | 1_1:+79263928 | None:intergenic |
| GGACACACACGAAAGAGTAA+GGG | 0.672386 | 1_1:+79264236 | None:intergenic |
| AGTTATGGATCACAGAGTCA+CGG | 0.675946 | 1_1:+79264065 | None:intergenic |
| TGCAAAGGCAGGGAAATCCA+AGG | 0.678227 | 1_1:-79263067 | Msa0046840:intron |
| TGGATCCCAAATCGGCGATG+CGG | 0.678949 | 1_1:+79263918 | None:intergenic |
| GATAAGTGAAACCATGATGT+GGG | 0.683459 | 1_1:+79259107 | None:intergenic |
| CAAAACCTGTAACATGACAT+GGG | 0.684151 | 1_1:-79258093 | Msa0046840:three_prime_UTR |
| AATAATTGTACAATGATACA+GGG | 0.693390 | 1_1:+79258489 | None:intergenic |
| TCTTGCAGGAGGGCATACGG+AGG | 0.702619 | 1_1:-79260317 | Msa0046840:intron |
| GCAGTTGGTGAATCTCGGTG+CGG | 0.718655 | 1_1:+79264136 | None:intergenic |
| AAATGGTGATGGAACCGTCG+CGG | 0.723389 | 1_1:+79264215 | None:intergenic |
| TTGGCATGATAACAAAGACA+GGG | 0.735805 | 1_1:+79260858 | None:intergenic |
| TGATGGGTGCATAGTCAAGG+CGG | 0.737283 | 1_1:+79260708 | None:intergenic |
| TGATACAGGGAATTCCAACG+TGG | 0.825223 | 1_1:+79258502 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTATTTTTTTAATGAAATA+AGG | - | chr1_1:79261258-79261277 | Msa0046840:intron | 10.0% |
| !!! | TATGTTTATATTAGTTTATT+TGG | + | chr1_1:79261305-79261324 | None:intergenic | 10.0% |
| !! | AACTAATATAAACATAATTA+TGG | - | chr1_1:79261309-79261328 | Msa0046840:intron | 10.0% |
| !! | ATATTAAAAAAAAAAAACGT+TGG | - | chr1_1:79262227-79262246 | Msa0046840:intron | 10.0% |
| !! | TATGTATATTATCTTTAAAT+AGG | + | chr1_1:79262945-79262964 | None:intergenic | 10.0% |
| !! | ATATAATTTAATCTAGCTAT+TGG | - | chr1_1:79258954-79258973 | Msa0046840:intron | 15.0% |
| !! | TATAATTTAATCTAGCTATT+GGG | - | chr1_1:79258955-79258974 | Msa0046840:intron | 15.0% |
| !! | ATAAATCATCAATTAAAGAA+AGG | + | chr1_1:79259466-79259485 | None:intergenic | 15.0% |
| !! | AAACAATGTTAATATGTTAA+AGG | - | chr1_1:79259803-79259822 | Msa0046840:intron | 15.0% |
| !!! | TTTAATTTCATTTTTTGCTT+AGG | + | chr1_1:79260556-79260575 | None:intergenic | 15.0% |
| !!! | TTTTTAAAATCACATACTTT+TGG | - | chr1_1:79263602-79263621 | Msa0046840:intron | 15.0% |
| !! | TTATAAAATAAGAAATGTCA+TGG | + | chr1_1:79264283-79264302 | None:intergenic | 15.0% |
| !! | TAGTTGTTTAAAGAAGAATT+TGG | + | chr1_1:79258583-79258602 | None:intergenic | 20.0% |
| !!! | TAACTTTCATTTTTTTGACT+TGG | - | chr1_1:79258868-79258887 | Msa0046840:CDS | 20.0% |
| !! | TTGTTAAACTTAGTTAGATT+CGG | - | chr1_1:79260143-79260162 | Msa0046840:intron | 20.0% |
| !!! | ATGATAAATACTTGTTTTGT+AGG | - | chr1_1:79260257-79260276 | Msa0046840:CDS | 20.0% |
| !!! | GTTTTATTCCATAATATTGA+AGG | - | chr1_1:79260748-79260767 | Msa0046840:CDS | 20.0% |
| !! | AAAGATAATAATTAATAGCC+AGG | + | chr1_1:79260853-79260872 | None:intergenic | 20.0% |
| !!! | TATCTTTTTTTTTTTGCGTT+TGG | - | chr1_1:79260866-79260885 | Msa0046840:CDS | 20.0% |
| !! | AATCCAAATAAGCTATAAAT+AGG | + | chr1_1:79260897-79260916 | None:intergenic | 20.0% |
| !! | TAATTAAGCATATATTGAGT+AGG | + | chr1_1:79261088-79261107 | None:intergenic | 20.0% |
| !!! | AATTAAGTTGTTTATCCAAA+TGG | - | chr1_1:79261103-79261122 | Msa0046840:intron | 20.0% |
| !! | CATAAAAAAAAAACCGTTAA+GGG | + | chr1_1:79261175-79261194 | None:intergenic | 20.0% |
| !! | TGAAATAAGGAATACATTTA+CGG | - | chr1_1:79261271-79261290 | Msa0046840:intron | 20.0% |
| !! | TGTTCTTCATGTTTAATTAA+GGG | - | chr1_1:79261900-79261919 | Msa0046840:intron | 20.0% |
| !!! | TTTAGACTTAAGTTGATTTT+CGG | + | chr1_1:79261988-79262007 | None:intergenic | 20.0% |
| !! | CCAAAACAAAAATAACAAAA+AGG | + | chr1_1:79262112-79262131 | None:intergenic | 20.0% |
| !!! | CCTTTTTGTTATTTTTGTTT+TGG | - | chr1_1:79262109-79262128 | Msa0046840:intron | 20.0% |
| !! | AACTCTTAAAGTTCAAATTT+CGG | - | chr1_1:79262420-79262439 | Msa0046840:intron | 20.0% |
| !! | TTTCTACGTTTATGAAAAAA+AGG | - | chr1_1:79263559-79263578 | Msa0046840:intron | 20.0% |
| !! | AATAATTGTACAATGATACA+GGG | + | chr1_1:79263765-79263784 | None:intergenic | 20.0% |
| !! | TTCTACCAAAAAAATTGATA+TGG | - | chr1_1:79264109-79264128 | Msa0046840:intron | 20.0% |
| !!! | GTTGTTTTGTTTTGGTATTA+AGG | + | chr1_1:79258475-79258494 | None:intergenic | 25.0% |
| !!! | TGTAGAATGTTGTTTTGTTT+TGG | + | chr1_1:79258483-79258502 | None:intergenic | 25.0% |
| !!! | AGTTAGGTGTTTATTTTTGA+AGG | - | chr1_1:79258687-79258706 | Msa0046840:CDS | 25.0% |
| !! | TAGGTTCAAAATGTTTGTTA+TGG | - | chr1_1:79258985-79259004 | Msa0046840:intron | 25.0% |
| ! | AATAAGTAATCCAATACTCA+CGG | - | chr1_1:79259260-79259279 | Msa0046840:intron | 25.0% |
| ! | TTTCACATATGTTGAAAATG+TGG | - | chr1_1:79259534-79259553 | Msa0046840:CDS | 25.0% |
| ! | GCATGACTAAAAAAGTTATA+TGG | + | chr1_1:79259634-79259653 | None:intergenic | 25.0% |
| ! | TTGTAAATGAAAGATAAGAG+AGG | - | chr1_1:79259665-79259684 | Msa0046840:intron | 25.0% |
| !!! | TGATGGTGTATTTTAAGATT+TGG | - | chr1_1:79259702-79259721 | Msa0046840:intron | 25.0% |
| ! | TAAAGGTAGAAACATTTATC+TGG | - | chr1_1:79259820-79259839 | Msa0046840:intron | 25.0% |
| ! | AAAGGTAGAAACATTTATCT+GGG | - | chr1_1:79259821-79259840 | Msa0046840:intron | 25.0% |
| !!! | ATTGAGTATTGCATTTTTTG+TGG | - | chr1_1:79260167-79260186 | Msa0046840:intron | 25.0% |
| !! | ATATGGAACCTATAAAGTTT+TGG | - | chr1_1:79260295-79260314 | Msa0046840:CDS | 25.0% |
| !! | TATGGAACCTATAAAGTTTT+GGG | - | chr1_1:79260296-79260315 | Msa0046840:CDS | 25.0% |
| !!! | GTCTCTTTTGACTATAAATA+GGG | + | chr1_1:79260673-79260692 | None:intergenic | 25.0% |
| !!! | TGTCTCTTTTGACTATAAAT+AGG | + | chr1_1:79260674-79260693 | None:intergenic | 25.0% |
| ! | GCTTATTTGGATTTATCTTA+TGG | - | chr1_1:79260904-79260923 | Msa0046840:intron | 25.0% |
| !! | TAGCTTATGATATCTTTTAG+CGG | - | chr1_1:79260963-79260982 | Msa0046840:intron | 25.0% |
| ! | CTTATTTCAATAAGCTCTAT+AGG | - | chr1_1:79260993-79261012 | Msa0046840:intron | 25.0% |
| !! | TACTTTTCATATAAGCACTT+AGG | + | chr1_1:79261065-79261084 | None:intergenic | 25.0% |
| ! | TATTAAATAAGGATGCCATT+TGG | + | chr1_1:79261121-79261140 | None:intergenic | 25.0% |
| ! | GATCAGGTGTTTATTAAATA+AGG | + | chr1_1:79261132-79261151 | None:intergenic | 25.0% |
| ! | GCATAAAAAAAAAACCGTTA+AGG | + | chr1_1:79261176-79261195 | None:intergenic | 25.0% |
| !! | TATGAGATGTGATTCTAAAA+TGG | - | chr1_1:79261805-79261824 | Msa0046840:intron | 25.0% |
| ! | GTGTTCTTCATGTTTAATTA+AGG | - | chr1_1:79261899-79261918 | Msa0046840:intron | 25.0% |
| ! | AAAAATTGCAAAGATAATGC+AGG | - | chr1_1:79262251-79262270 | Msa0046840:intron | 25.0% |
| ! | TAGTAAAAAATTAGGAATGG+TGG | + | chr1_1:79262470-79262489 | None:intergenic | 25.0% |
| ! | CACTAGTAAAAAATTAGGAA+TGG | + | chr1_1:79262473-79262492 | None:intergenic | 25.0% |
| ! | GTGATCACTAGTAAAAAATT+AGG | + | chr1_1:79262478-79262497 | None:intergenic | 25.0% |
| ! | GAGAAATTATTTCCTGAATA+AGG | + | chr1_1:79263001-79263020 | None:intergenic | 25.0% |
| !! | AGTCAATTTTATATATCCTG+AGG | - | chr1_1:79263306-79263325 | Msa0046840:intron | 25.0% |
| ! | ATACAAGTTCTTAAGTGAAA+AGG | + | chr1_1:79263415-79263434 | None:intergenic | 25.0% |
| ! | CTTAAGAACTTGTATACTAT+AGG | - | chr1_1:79263420-79263439 | Msa0046840:CDS | 25.0% |
| !!! | TTTGTTATTGTCTTTGTTAC+AGG | - | chr1_1:79263515-79263534 | Msa0046840:CDS | 25.0% |
| ! | TTACTTCAAAGATTGATTGA+TGG | - | chr1_1:79263660-79263679 | Msa0046840:CDS | 25.0% |
| ! | CAATAATTGTACAATGATAC+AGG | + | chr1_1:79263766-79263785 | None:intergenic | 25.0% |
| ! | AACTCAAAAAAAACATCTAC+TGG | + | chr1_1:79263805-79263824 | None:intergenic | 25.0% |
| !!! | TTTTGTAATGTAAACTTGCT+CGG | - | chr1_1:79263824-79263843 | Msa0046840:CDS | 25.0% |
| ! | TTAAAATTTGTCACTCCTAT+CGG | - | chr1_1:79263968-79263987 | Msa0046840:CDS | 25.0% |
| ! | GATACATCAGAAAAAAACAA+TGG | + | chr1_1:79264083-79264102 | None:intergenic | 25.0% |
| !!! | CTTTGCCATATCAATTTTTT+TGG | + | chr1_1:79264117-79264136 | None:intergenic | 25.0% |
| ! | CAAAAAAATTGATATGGCAA+AGG | - | chr1_1:79264115-79264134 | Msa0046840:intron | 25.0% |
| AACAAACCTCAACTCTTAAA+AGG | - | chr1_1:79258445-79258464 | Msa0046840:three_prime_UTR | 30.0% | |
| TGTTTCTTTCGATCTAAGTT+AGG | - | chr1_1:79258671-79258690 | Msa0046840:CDS | 30.0% | |
| AATTCCATCAAAACAACACT+GGG | + | chr1_1:79258777-79258796 | None:intergenic | 30.0% | |
| !!! | TGTTGTTTTGATGGAATTCA+TGG | - | chr1_1:79258779-79258798 | Msa0046840:intron | 30.0% |
| GGAATTCATGGAATTCATAA+TGG | - | chr1_1:79258791-79258810 | Msa0046840:intron | 30.0% | |
| TGAAAGTTAAAACGAAGTGT+TGG | + | chr1_1:79258857-79258876 | None:intergenic | 30.0% | |
| !! | TTGACTTGGATTGAAACTTT+AGG | - | chr1_1:79258882-79258901 | Msa0046840:intron | 30.0% |
| TATACATGATATGCATGGAT+AGG | - | chr1_1:79258917-79258936 | Msa0046840:intron | 30.0% | |
| ATACATGATATGCATGGATA+GGG | - | chr1_1:79258918-79258937 | Msa0046840:intron | 30.0% | |
| ATTTAATCTAGCTATTGGGA+TGG | - | chr1_1:79258959-79258978 | Msa0046840:intron | 30.0% | |
| ! | GATTGGTTATTAAGGCTAAT+GGG | - | chr1_1:79259075-79259094 | Msa0046840:CDS | 30.0% |
| ATCAAACATTTACCAAAAGC+AGG | + | chr1_1:79259225-79259244 | None:intergenic | 30.0% | |
| ! | TAAATCCAATTTTGTTCCTG+TGG | + | chr1_1:79259327-79259346 | None:intergenic | 30.0% |
| ! | TAAAATTAAGTGCCGTGATA+TGG | - | chr1_1:79259378-79259397 | Msa0046840:intron | 30.0% |
| AACATTTATCTGGGTAAATG+AGG | - | chr1_1:79259830-79259849 | Msa0046840:intron | 30.0% | |
| AAGACATACTTGTGGATATT+AGG | - | chr1_1:79259861-79259880 | Msa0046840:intron | 30.0% | |
| !!! | TTGTAGACAAAGGTTTTGTT+AGG | + | chr1_1:79259913-79259932 | None:intergenic | 30.0% |
| ! | ATAAACCTTGTTGTAGACAA+AGG | + | chr1_1:79259923-79259942 | None:intergenic | 30.0% |
| AACAAGGTTTATCTATCTCA+GGG | - | chr1_1:79259931-79259950 | Msa0046840:intron | 30.0% | |
| AAGTTCAGAAAAATTGAGAG+AGG | + | chr1_1:79260066-79260085 | None:intergenic | 30.0% | |
| ! | ATTTTTCTGAACTTTCTCTC+TGG | - | chr1_1:79260072-79260091 | Msa0046840:intron | 30.0% |
| AACATCAGTTTCTAACAGTA+GGG | - | chr1_1:79260110-79260129 | Msa0046840:intron | 30.0% | |
| ATGGATCTGTATATTAAGCT+TGG | - | chr1_1:79260203-79260222 | Msa0046840:intron | 30.0% | |
| TGGATCTGTATATTAAGCTT+GGG | - | chr1_1:79260204-79260223 | Msa0046840:intron | 30.0% | |
| GGCATATTTCATTACGAATA+TGG | - | chr1_1:79260278-79260297 | Msa0046840:CDS | 30.0% | |
| ATGAACTCCCAAAACTTTAT+AGG | + | chr1_1:79260306-79260325 | None:intergenic | 30.0% | |
| ! | TTCATGTCTCTAATTTTGGA+AGG | - | chr1_1:79260321-79260340 | Msa0046840:intron | 30.0% |
| ! | CTTTTGTACTGTTAACCATT+AGG | - | chr1_1:79260366-79260385 | Msa0046840:intron | 30.0% |
| ACTTTAATTCACGAGAGATT+TGG | + | chr1_1:79260459-79260478 | None:intergenic | 30.0% | |
| !!! | ATTTTGACTTGAAACACTTC+AGG | - | chr1_1:79260487-79260506 | Msa0046840:intron | 30.0% |
| !! | TTTTGACTATAAATAGGGCA+GGG | + | chr1_1:79260668-79260687 | None:intergenic | 30.0% |
| TATTTGCGCCTTCAATATTA+TGG | + | chr1_1:79260759-79260778 | None:intergenic | 30.0% | |
| !! | CGCAAATATAAGTTGGATTT+TGG | - | chr1_1:79260771-79260790 | Msa0046840:CDS | 30.0% |
| !! | ATAAGTTGGATTTTGGCATT+AGG | - | chr1_1:79260778-79260797 | Msa0046840:CDS | 30.0% |
| GAGCCTATTTATAGCTTATT+TGG | - | chr1_1:79260891-79260910 | Msa0046840:intron | 30.0% | |
| ATGTAATCAAAGAGTGAATG+TGG | + | chr1_1:79261031-79261050 | None:intergenic | 30.0% | |
| GTACATAACTCAGATAACAA+AGG | + | chr1_1:79261351-79261370 | None:intergenic | 30.0% | |
| !! | ATGTGAGTCTTATTCTTGAA+GGG | + | chr1_1:79261486-79261505 | None:intergenic | 30.0% |
| ! | TTTTGAGCAATCAAAAGATC+TGG | + | chr1_1:79261515-79261534 | None:intergenic | 30.0% |
| !! | TTTTGATTGCTCAAAAGCAA+AGG | - | chr1_1:79261519-79261538 | Msa0046840:intron | 30.0% |
| TGTCTTAACTCCAATATTCA+TGG | - | chr1_1:79261610-79261629 | Msa0046840:intron | 30.0% | |
| !!! | GGATTTTTTTTCAAAGCACA+TGG | + | chr1_1:79261703-79261722 | None:intergenic | 30.0% |
| GAAAAAAAATCCTGAGAAGT+TGG | - | chr1_1:79261711-79261730 | Msa0046840:intron | 30.0% | |
| ! | CACAGTATCAGTAATTTTGT+AGG | + | chr1_1:79261749-79261768 | None:intergenic | 30.0% |
| CTACAAAATTACTGATACTG+TGG | - | chr1_1:79261747-79261766 | Msa0046840:intron | 30.0% | |
| TGTTAATCCTACTTCTTGTA+CGG | - | chr1_1:79261875-79261894 | Msa0046840:intron | 30.0% | |
| CAACTTAAGTCTAAAAGAGA+AGG | - | chr1_1:79261993-79262012 | Msa0046840:intron | 30.0% | |
| CACAAACAAAGAAGTTAGAT+GGG | + | chr1_1:79262076-79262095 | None:intergenic | 30.0% | |
| TCACAAACAAAGAAGTTAGA+TGG | + | chr1_1:79262077-79262096 | None:intergenic | 30.0% | |
| ! | ACTTCTTTGTTTGTGATATC+TGG | - | chr1_1:79262081-79262100 | Msa0046840:intron | 30.0% |
| TCTAAACGCCATTTAAAAGT+AGG | - | chr1_1:79262160-79262179 | Msa0046840:intron | 30.0% | |
| !! | TGAATGTGCCTACTTTTAAA+TGG | + | chr1_1:79262171-79262190 | None:intergenic | 30.0% |
| GGATATGACATGAACAAATT+GGG | + | chr1_1:79262297-79262316 | None:intergenic | 30.0% | |
| AGGATATGACATGAACAAAT+TGG | + | chr1_1:79262298-79262317 | None:intergenic | 30.0% | |
| TAAAAAATTAGGAATGGTGG+TGG | + | chr1_1:79262467-79262486 | None:intergenic | 30.0% | |
| CTTCTATTATACTCATCGAT+CGG | - | chr1_1:79262745-79262764 | Msa0046840:CDS | 30.0% | |
| TACAGTGTTAATTGACAATC+TGG | + | chr1_1:79262860-79262879 | None:intergenic | 30.0% | |
| ATTGTATGCTTGTTCAGATT+GGG | - | chr1_1:79263102-79263121 | Msa0046840:CDS | 30.0% | |
| ! | TAATTGGGTGATGTTTTTCA+AGG | - | chr1_1:79263254-79263273 | Msa0046840:intron | 30.0% |
| AAACAACCTATTGATCACAA+AGG | + | chr1_1:79263362-79263381 | None:intergenic | 30.0% | |
| CTACGTTTATGAAAAAAAGG+AGG | - | chr1_1:79263562-79263581 | Msa0046840:intron | 30.0% | |
| !! | CTTTGAAGTAACAAACTTCT+TGG | + | chr1_1:79263651-79263670 | None:intergenic | 30.0% |
| !!! | TTGATGGTTTTTTCTTCTTC+TGG | - | chr1_1:79263676-79263695 | Msa0046840:CDS | 30.0% |
| ! | CTAGATTTTTCTTAGATGAG+CGG | - | chr1_1:79263705-79263724 | Msa0046840:CDS | 30.0% |
| ! | TAGATTTTTCTTAGATGAGC+GGG | - | chr1_1:79263706-79263725 | Msa0046840:CDS | 30.0% |
| AAAGAGAGCTTAAAATGTTG+TGG | - | chr1_1:79263899-79263918 | Msa0046840:CDS | 30.0% | |
| AAGAGAGCTTAAAATGTTGT+GGG | - | chr1_1:79263900-79263919 | Msa0046840:CDS | 30.0% | |
| TAAAATTTGTCACTCCTATC+GGG | - | chr1_1:79263969-79263988 | Msa0046840:CDS | 30.0% | |
| ! | ATGTGATTGGTGATTATCTT+TGG | - | chr1_1:79264025-79264044 | Msa0046840:exon | 30.0% |
| ATAATCAAATGCAGTCTGGA+AGG | + | chr1_1:79258214-79258233 | None:intergenic | 35.0% | |
| TTCCAGACTGCATTTGATTA+TGG | - | chr1_1:79258213-79258232 | Msa0046840:three_prime_UTR | 35.0% | |
| !! | GGTTAACCTTTTAAGAGTTG+AGG | + | chr1_1:79258454-79258473 | None:intergenic | 35.0% |
| TTAATCTCTGCAGCATTTGA+AGG | - | chr1_1:79258529-79258548 | Msa0046840:three_prime_UTR | 35.0% | |
| !! | AGTTGAGGTTGTTTTCCATA+TGG | - | chr1_1:79258552-79258571 | Msa0046840:three_prime_UTR | 35.0% |
| GAATTCCATCAAAACAACAC+TGG | + | chr1_1:79258778-79258797 | None:intergenic | 35.0% | |
| !! | AAACGAAGTGTTGGTAAAGT+AGG | + | chr1_1:79258848-79258867 | None:intergenic | 35.0% |
| CTGCATATACATGATATGCA+TGG | - | chr1_1:79258912-79258931 | Msa0046840:intron | 35.0% | |
| TACATGATATGCATGGATAG+GGG | - | chr1_1:79258919-79258938 | Msa0046840:intron | 35.0% | |
| ATCATTATGCTGGAAACAGT+AGG | + | chr1_1:79259024-79259043 | None:intergenic | 35.0% | |
| CTGAGTAATGATCATTATGC+TGG | + | chr1_1:79259034-79259053 | None:intergenic | 35.0% | |
| !! | GGATTGGTTATTAAGGCTAA+TGG | - | chr1_1:79259074-79259093 | Msa0046840:CDS | 35.0% |
| ! | ATGTTGTTCTTACCTGCTTT+TGG | - | chr1_1:79259210-79259229 | Msa0046840:intron | 35.0% |
| ! | TTGAATCTGAAGTTTACCAC+AGG | - | chr1_1:79259308-79259327 | Msa0046840:intron | 35.0% |
| GTTTACCACAGGAACAAAAT+TGG | - | chr1_1:79259319-79259338 | Msa0046840:intron | 35.0% | |
| ! | CAACCAGTTTTTCCATATCA+CGG | + | chr1_1:79259393-79259412 | None:intergenic | 35.0% |
| GTGATATGGAAAAACTGGTT+GGG | - | chr1_1:79259392-79259411 | Msa0046840:intron | 35.0% | |
| TGATATGGAAAAACTGGTTG+GGG | - | chr1_1:79259393-79259412 | Msa0046840:intron | 35.0% | |
| AAGTAGTCACACATGCATAT+TGG | + | chr1_1:79259420-79259439 | None:intergenic | 35.0% | |
| TTCTCTTACCAGTTCATTGT+TGG | - | chr1_1:79259490-79259509 | Msa0046840:CDS | 35.0% | |
| !! | AGGCATAAGAGAAGTTTTGA+TGG | - | chr1_1:79259685-79259704 | Msa0046840:intron | 35.0% |
| AAGTCTGAAAGACATACTTG+TGG | - | chr1_1:79259853-79259872 | Msa0046840:intron | 35.0% | |
| TTAGGAATAGAAAAGTCCAG+TGG | - | chr1_1:79259879-79259898 | Msa0046840:intron | 35.0% | |
| TAGGAATAGAAAAGTCCAGT+GGG | - | chr1_1:79259880-79259899 | Msa0046840:intron | 35.0% | |
| CAAAACCTTTGTCTACAACA+AGG | - | chr1_1:79259915-79259934 | Msa0046840:intron | 35.0% | |
| CAACAAGGTTTATCTATCTC+AGG | - | chr1_1:79259930-79259949 | Msa0046840:intron | 35.0% | |
| GAACATCAGTTTCTAACAGT+AGG | - | chr1_1:79260109-79260128 | Msa0046840:intron | 35.0% | |
| TTGTGGAGAAAAACGAAAGA+TGG | - | chr1_1:79260184-79260203 | Msa0046840:intron | 35.0% | |
| ! | GGAGTTCATGTCTCTAATTT+TGG | - | chr1_1:79260317-79260336 | Msa0046840:intron | 35.0% |
| !! | TCTCTAATTTTGGAAGGTCT+TGG | - | chr1_1:79260327-79260346 | Msa0046840:intron | 35.0% |
| TAAGAGCAAGAAAGACCTAA+TGG | + | chr1_1:79260384-79260403 | None:intergenic | 35.0% | |
| TTCACTCTTGATGCAAAACA+AGG | - | chr1_1:79260431-79260450 | Msa0046840:intron | 35.0% | |
| TTTGACTATAAATAGGGCAG+GGG | + | chr1_1:79260667-79260686 | None:intergenic | 35.0% | |
| !! | CTTTTGACTATAAATAGGGC+AGG | + | chr1_1:79260669-79260688 | None:intergenic | 35.0% |
| TATAGTCAAAAGAGACATGC+TGG | - | chr1_1:79260677-79260696 | Msa0046840:intron | 35.0% | |
| ! | TTGAAGGCGCAAATATAAGT+TGG | - | chr1_1:79260764-79260783 | Msa0046840:CDS | 35.0% |
| !! | TGGATTTTGGCATTAGGATT+AGG | - | chr1_1:79260784-79260803 | Msa0046840:CDS | 35.0% |
| AGTTTCTGTCAAATCATCTC+TGG | - | chr1_1:79260811-79260830 | Msa0046840:CDS | 35.0% | |
| GTTTCTGTCAAATCATCTCT+GGG | - | chr1_1:79260812-79260831 | Msa0046840:CDS | 35.0% | |
| !!! | GGGTTAAGAATTTTTTGTCC+TGG | - | chr1_1:79260832-79260851 | Msa0046840:CDS | 35.0% |
| TTAGGTTACGAAACTTGATC+AGG | + | chr1_1:79261148-79261167 | None:intergenic | 35.0% | |
| TTGGCATGATAACAAAGACA+GGG | + | chr1_1:79261396-79261415 | None:intergenic | 35.0% | |
| ATTGGCATGATAACAAAGAC+AGG | + | chr1_1:79261397-79261416 | None:intergenic | 35.0% | |
| TATCATGCCAATTGCACATT+TGG | - | chr1_1:79261405-79261424 | Msa0046840:intron | 35.0% | |
| ! | ATTTGGTGGAGTGGATATAT+AGG | - | chr1_1:79261422-79261441 | Msa0046840:intron | 35.0% |
| !! | TGTGAGTCTTATTCTTGAAG+GGG | + | chr1_1:79261485-79261504 | None:intergenic | 35.0% |
| !! | GATGTGAGTCTTATTCTTGA+AGG | + | chr1_1:79261487-79261506 | None:intergenic | 35.0% |
| !! | TTTTTCAAAGCACATGGTTC+AGG | + | chr1_1:79261697-79261716 | None:intergenic | 35.0% |
| TTAGAATTAGCCAACTTCTC+AGG | + | chr1_1:79261724-79261743 | None:intergenic | 35.0% | |
| GTTAATCCTACTTCTTGTAC+GGG | - | chr1_1:79261876-79261895 | Msa0046840:intron | 35.0% | |
| TTAATCCTACTTCTTGTACG+GGG | - | chr1_1:79261877-79261896 | Msa0046840:intron | 35.0% | |
| ! | ACTGTAATTTTTCTTGCAGG+AGG | - | chr1_1:79261923-79261942 | Msa0046840:CDS | 35.0% |
| ! | CTGTAATTTTTCTTGCAGGA+GGG | - | chr1_1:79261924-79261943 | Msa0046840:CDS | 35.0% |
| !! | AGATATACAGAAGCTTTGGA+GGG | + | chr1_1:79262020-79262039 | None:intergenic | 35.0% |
| ! | AAGATATACAGAAGCTTTGG+AGG | + | chr1_1:79262021-79262040 | None:intergenic | 35.0% |
| TCCAAAGCTTCTGTATATCT+TGG | - | chr1_1:79262020-79262039 | Msa0046840:intron | 35.0% | |
| TCCAAGATATACAGAAGCTT+TGG | + | chr1_1:79262024-79262043 | None:intergenic | 35.0% | |
| CACATTCACATAATTGTAGC+AGG | - | chr1_1:79262183-79262202 | Msa0046840:intron | 35.0% | |
| ATGAGATATGTGGAGTAGAA+AGG | + | chr1_1:79262318-79262337 | None:intergenic | 35.0% | |
| TCGTATCAAGATGAGATATG+TGG | + | chr1_1:79262328-79262347 | None:intergenic | 35.0% | |
| TAAAGTTCAAATTTCGGAGC+TGG | - | chr1_1:79262426-79262445 | Msa0046840:intron | 35.0% | |
| CTTTGTAAGAGCAGTAATGA+AGG | + | chr1_1:79262725-79262744 | None:intergenic | 35.0% | |
| ! | TCGATCGGTTTATTCATTCA+TGG | - | chr1_1:79262760-79262779 | Msa0046840:intron | 35.0% |
| ACCAGATTGTCAATTAACAC+TGG | - | chr1_1:79262828-79262847 | Msa0046840:intron | 35.0% | |
| TCCAGTGTTAATTGACAATC+TGG | + | chr1_1:79262832-79262851 | None:intergenic | 35.0% | |
| !! | GTCGTTAACTTGTCTAATGA+TGG | - | chr1_1:79262884-79262903 | Msa0046840:intron | 35.0% |
| TGTTGTGTAGTTCCTTATTC+AGG | - | chr1_1:79262986-79263005 | Msa0046840:intron | 35.0% | |
| CATCATTGTAGTTCTTGAGA+TGG | + | chr1_1:79263023-79263042 | None:intergenic | 35.0% | |
| TACAATGATGATCCAGCTAT+TGG | - | chr1_1:79263033-79263052 | Msa0046840:intron | 35.0% | |
| CATTGCACTTTCTAATGTGA+AGG | - | chr1_1:79263059-79263078 | Msa0046840:intron | 35.0% | |
| CATTGTATGCTTGTTCAGAT+TGG | - | chr1_1:79263101-79263120 | Msa0046840:CDS | 35.0% | |
| TTGTATGCTTGTTCAGATTG+GGG | - | chr1_1:79263103-79263122 | Msa0046840:CDS | 35.0% | |
| GATAAGTGAAACCATGATGT+GGG | + | chr1_1:79263147-79263166 | None:intergenic | 35.0% | |
| TGATAAGTGAAACCATGATG+TGG | + | chr1_1:79263148-79263167 | None:intergenic | 35.0% | |
| CATTAAAATCCCTTGCAGAA+GGG | - | chr1_1:79263229-79263248 | Msa0046840:intron | 35.0% | |
| ! | TTTTATATATCCTGAGGTCG+TGG | - | chr1_1:79263312-79263331 | Msa0046840:intron | 35.0% |
| !! | TTGAATCCATTGATAGTGCT+TGG | - | chr1_1:79263476-79263495 | Msa0046840:CDS | 35.0% |
| GTAGAAAGCTGTAAATGCTA+AGG | + | chr1_1:79263546-79263565 | None:intergenic | 35.0% | |
| AAAAAGGAGGAAGACATTGA+CGG | - | chr1_1:79263575-79263594 | Msa0046840:intron | 35.0% | |
| !!! | TGGTTTTTTCTTCTTCTGGT+TGG | - | chr1_1:79263680-79263699 | Msa0046840:CDS | 35.0% |
| CATCTTCATTTAATCCACGT+TGG | - | chr1_1:79263735-79263754 | Msa0046840:intron | 35.0% | |
| !!! | GTAGAGGTATTTTTTTGCAG+TGG | - | chr1_1:79263848-79263867 | Msa0046840:CDS | 35.0% |
| ACTCCTATCGGGAATTTAAT+CGG | - | chr1_1:79263980-79263999 | Msa0046840:CDS | 35.0% | |
| AAACCGATTAAATTCCCGAT+AGG | + | chr1_1:79263986-79264005 | None:intergenic | 35.0% | |
| ACCAATCACATCCCATATAA+GGG | + | chr1_1:79264016-79264035 | None:intergenic | 35.0% | |
| ! | TGATTGGTGATTATCTTTGG+CGG | - | chr1_1:79264028-79264047 | Msa0046840:exon | 35.0% |
| TTGAGCAAACATGACTCAAA+GGG | + | chr1_1:79264054-79264073 | None:intergenic | 35.0% | |
| TTTGAGCAAACATGACTCAA+AGG | + | chr1_1:79264055-79264074 | None:intergenic | 35.0% | |
| TCAAAACCTGTAACATGACA+TGG | - | chr1_1:79264157-79264176 | Msa0046840:five_prime_UTR | 35.0% | |
| CAAAACCTGTAACATGACAT+GGG | - | chr1_1:79264158-79264177 | Msa0046840:five_prime_UTR | 35.0% | |
| AGTTATGGATCACAGAGTCA+CGG | + | chr1_1:79258189-79258208 | None:intergenic | 40.0% | |
| CAGACTGCATTTGATTATGG+CGG | - | chr1_1:79258216-79258235 | Msa0046840:three_prime_UTR | 40.0% | |
| !! | TTCAATGGTGGATCCCAAAT+CGG | + | chr1_1:79258344-79258363 | None:intergenic | 40.0% |
| AGAAGACCTAATTGCTCAGA+GGG | + | chr1_1:79258373-79258392 | None:intergenic | 40.0% | |
| TCTGAGCAATTAGGTCTTCT+CGG | - | chr1_1:79258373-79258392 | Msa0046840:three_prime_UTR | 40.0% | |
| ! | AAGAATTTGGAGCAGCCATA+TGG | + | chr1_1:79258570-79258589 | None:intergenic | 40.0% |
| CATCATTCCGTCAATGTTGA+AGG | - | chr1_1:79258610-79258629 | Msa0046840:CDS | 40.0% | |
| TGCTTCACCTTCAACATTGA+CGG | + | chr1_1:79258620-79258639 | None:intergenic | 40.0% | |
| !!! | TTCTCCCAGTGTTGTTTTGA+TGG | - | chr1_1:79258770-79258789 | Msa0046840:intron | 40.0% |
| CTAGCTATTGGGATGGAAAT+AGG | - | chr1_1:79258966-79258985 | Msa0046840:intron | 40.0% | |
| ATTAAGGCTAATGGGACTAG+TGG | - | chr1_1:79259083-79259102 | Msa0046840:CDS | 40.0% | |
| ! | TAAACTGTTGGTGCCTTCAT+TGG | - | chr1_1:79259154-79259173 | Msa0046840:intron | 40.0% |
| TTTGCAGCATCAACCAATGA+AGG | + | chr1_1:79259170-79259189 | None:intergenic | 40.0% | |
| ! | TTCATTGGTTGATGCTGCAA+AGG | - | chr1_1:79259169-79259188 | Msa0046840:intron | 40.0% |
| GGTAAGAACAACATCTACCT+TGG | + | chr1_1:79259204-79259223 | None:intergenic | 40.0% | |
| GATGAAATTGCCGTGAGTAT+TGG | + | chr1_1:79259273-79259292 | None:intergenic | 40.0% | |
| CGTGATATGGAAAAACTGGT+TGG | - | chr1_1:79259391-79259410 | Msa0046840:intron | 40.0% | |
| ! | TACCAGTTCATTGTTGGTGA+TGG | - | chr1_1:79259496-79259515 | Msa0046840:CDS | 40.0% |
| !! | TCCTGCAGCTTTTTCTGAAA+CGG | + | chr1_1:79259605-79259624 | None:intergenic | 40.0% |
| ATTGTCTGTTCTTTCTTCCC+TGG | - | chr1_1:79259748-79259767 | Msa0046840:intron | 40.0% | |
| ! | TGTTAAAAGTGTGCACACCA+GGG | + | chr1_1:79259768-79259787 | None:intergenic | 40.0% |
| ! | TTGTTAAAAGTGTGCACACC+AGG | + | chr1_1:79259769-79259788 | None:intergenic | 40.0% |
| ! | TGGTGTGCACACTTTTAACA+AGG | - | chr1_1:79259768-79259787 | Msa0046840:intron | 40.0% |
| TCAATCACCCTCAGTTTGAA+CGG | - | chr1_1:79259988-79260007 | Msa0046840:intron | 40.0% | |
| TGGAAGGTCTTGGATATCAA+AGG | - | chr1_1:79260337-79260356 | Msa0046840:intron | 40.0% | |
| GTAACCTAATGCACCCTTAA+CGG | - | chr1_1:79261159-79261178 | Msa0046840:intron | 40.0% | |
| ! | AAAACCGTTAAGGGTGCATT+AGG | + | chr1_1:79261166-79261185 | None:intergenic | 40.0% |
| ! | TTTTATGCCCACGAGAATAC+TGG | - | chr1_1:79261188-79261207 | Msa0046840:intron | 40.0% |
| AGACAAACCAGTATTCTCGT+GGG | + | chr1_1:79261198-79261217 | None:intergenic | 40.0% | |
| TAGACAAACCAGTATTCTCG+TGG | + | chr1_1:79261199-79261218 | None:intergenic | 40.0% | |
| ATCTGAGTTATGTACCTTGC+AGG | - | chr1_1:79261356-79261375 | Msa0046840:intron | 40.0% | |
| AAGACAGGGATCTTTATGCT+TGG | + | chr1_1:79261382-79261401 | None:intergenic | 40.0% | |
| ! | AGAACCTGTAGAGGTATGAT+GGG | + | chr1_1:79261562-79261581 | None:intergenic | 40.0% |
| CAGTTCAGAGCCATGAATAT+TGG | + | chr1_1:79261623-79261642 | None:intergenic | 40.0% | |
| GGATGATGTTTCTTGCTCAA+AGG | - | chr1_1:79261826-79261845 | Msa0046840:intron | 40.0% | |
| ! | GGGACTGTAATTTTTCTTGC+AGG | - | chr1_1:79261920-79261939 | Msa0046840:CDS | 40.0% |
| GCTTCTGTATATCTTGGAAG+TGG | - | chr1_1:79262026-79262045 | Msa0046840:intron | 40.0% | |
| GTATATCTTGGAAGTGGAAG+AGG | - | chr1_1:79262032-79262051 | Msa0046840:intron | 40.0% | |
| ! | CAGTGTGCTTACATTTTTGC+AGG | + | chr1_1:79262793-79262812 | None:intergenic | 40.0% |
| TTGAGAAAATGCCCACATCA+TGG | - | chr1_1:79263133-79263152 | Msa0046840:CDS | 40.0% | |
| CACAGCAAAATTCCAAGATG+AGG | + | chr1_1:79263205-79263224 | None:intergenic | 40.0% | |
| GCATTAAAATCCCTTGCAGA+AGG | - | chr1_1:79263228-79263247 | Msa0046840:intron | 40.0% | |
| CCAATTATTCCCTTCTGCAA+GGG | + | chr1_1:79263241-79263260 | None:intergenic | 40.0% | |
| CCTTGCAGAAGGGAATAATT+GGG | - | chr1_1:79263239-79263258 | Msa0046840:intron | 40.0% | |
| CTATTGATCACAAAGGAGAG+AGG | + | chr1_1:79263355-79263374 | None:intergenic | 40.0% | |
| CTCTCTCCTTTGTGATCAAT+AGG | - | chr1_1:79263353-79263372 | Msa0046840:intron | 40.0% | |
| TCTCATCCAAGCACTATCAA+TGG | + | chr1_1:79263485-79263504 | None:intergenic | 40.0% | |
| !!! | TTTTGTTGACTCTGAAGCAG+TGG | - | chr1_1:79263875-79263894 | Msa0046840:CDS | 40.0% |
| GAGCTTAAAATGTTGTGGGT+TGG | - | chr1_1:79263904-79263923 | Msa0046840:CDS | 40.0% | |
| !! | CTTAAAATGTTGTGGGTTGG+AGG | - | chr1_1:79263907-79263926 | Msa0046840:CDS | 40.0% |
| ! | TGGAGGTTGATTGATAAACC+TGG | - | chr1_1:79263924-79263943 | Msa0046840:CDS | 40.0% |
| ! | GGAGGTTGATTGATAAACCT+GGG | - | chr1_1:79263925-79263944 | Msa0046840:CDS | 40.0% |
| ACCTGGGAAGCTATTTAGAT+TGG | - | chr1_1:79263941-79263960 | Msa0046840:CDS | 40.0% | |
| CCTGGGAAGCTATTTAGATT+GGG | - | chr1_1:79263942-79263961 | Msa0046840:CDS | 40.0% | |
| CACCAATCACATCCCATATA+AGG | + | chr1_1:79264017-79264036 | None:intergenic | 40.0% | |
| ! | TTTTGATGCATCCGACTCAA+AGG | + | chr1_1:79264143-79264162 | None:intergenic | 40.0% |
| TATGACCCATGTCATGTTAC+AGG | + | chr1_1:79264166-79264185 | None:intergenic | 40.0% | |
| GGACACACACGAAAGAGTAA+GGG | + | chr1_1:79258018-79258037 | None:intergenic | 45.0% | |
| GACGGTTCCATCACCATTTA+CGG | - | chr1_1:79258040-79258059 | Msa0046840:three_prime_UTR | 45.0% | |
| AGAGATATCGCAGCCGTAAA+TGG | + | chr1_1:79258056-79258075 | None:intergenic | 45.0% | |
| GCGATATCTCTCCTCACAAA+AGG | - | chr1_1:79258065-79258084 | Msa0046840:three_prime_UTR | 45.0% | |
| AAAGTAGAGAAGGTAGGACG+TGG | + | chr1_1:79258159-79258178 | None:intergenic | 45.0% | |
| CGTCCTACCTTCTCTACTTT+CGG | - | chr1_1:79258159-79258178 | Msa0046840:three_prime_UTR | 45.0% | |
| GTCCTACCTTCTCTACTTTC+GGG | - | chr1_1:79258160-79258179 | Msa0046840:three_prime_UTR | 45.0% | |
| ! | GCAGTCTGGAAGGTTAGTTA+TGG | + | chr1_1:79258204-79258223 | None:intergenic | 45.0% |
| CGCCATAATCAAATGCAGTC+TGG | + | chr1_1:79258218-79258237 | None:intergenic | 45.0% | |
| ACTGCATTTGATTATGGCGG+CGG | - | chr1_1:79258219-79258238 | Msa0046840:three_prime_UTR | 45.0% | |
| GGACACAGTAGGTGTTCAAT+CGG | + | chr1_1:79258315-79258334 | None:intergenic | 45.0% | |
| ! | AGAGGGTTCAAGTTCAATGG+TGG | + | chr1_1:79258356-79258375 | None:intergenic | 45.0% |
| ! | CTCAGAGGGTTCAAGTTCAA+TGG | + | chr1_1:79258359-79258378 | None:intergenic | 45.0% |
| CTTGAACCCTCTGAGCAATT+AGG | - | chr1_1:79258364-79258383 | Msa0046840:three_prime_UTR | 45.0% | |
| GAGAAGACCTAATTGCTCAG+AGG | + | chr1_1:79258374-79258393 | None:intergenic | 45.0% | |
| !! | AGGTTTGTTGCGAAGATCGA+CGG | + | chr1_1:79258434-79258453 | None:intergenic | 45.0% |
| TGCAGCATTTGAAGGAGTTG+AGG | - | chr1_1:79258537-79258556 | Msa0046840:three_prime_UTR | 45.0% | |
| CATTGACGGAATGATGAAGC+TGG | + | chr1_1:79258606-79258625 | None:intergenic | 45.0% | |
| ATCGTTGCCTTATCCACCTT+CGG | - | chr1_1:79258820-79258839 | Msa0046840:intron | 45.0% | |
| !! | GTTGGTAAAGTAGGTACCGA+AGG | + | chr1_1:79258839-79258858 | None:intergenic | 45.0% |
| TTACTCAGCAACTAAAGCCG+AGG | - | chr1_1:79259046-79259065 | Msa0046840:CDS | 45.0% | |
| TACTCAGCAACTAAAGCCGA+GGG | - | chr1_1:79259047-79259066 | Msa0046840:CDS | 45.0% | |
| AATAACCAATCCCTCACCCT+CGG | + | chr1_1:79259066-79259085 | None:intergenic | 45.0% | |
| !! | GGGTGAGGGATTGGTTATTA+AGG | - | chr1_1:79259067-79259086 | Msa0046840:CDS | 45.0% |
| ! | ATACGCCCTAGCAGCATTTT+TGG | - | chr1_1:79259122-79259141 | Msa0046840:CDS | 45.0% |
| CAGGTCCAAAAATGCTGCTA+GGG | + | chr1_1:79259130-79259149 | None:intergenic | 45.0% | |
| TGGACCTGGTGATAAACTGT+TGG | - | chr1_1:79259142-79259161 | Msa0046840:intron | 45.0% | |
| GTGCCGTGATATGGAAAAAC+TGG | - | chr1_1:79259387-79259406 | Msa0046840:intron | 45.0% | |
| TGCCATCACCAACAATGAAC+TGG | + | chr1_1:79259501-79259520 | None:intergenic | 45.0% | |
| AGCTCGATCAGCACATATGT+GGG | + | chr1_1:79259566-79259585 | None:intergenic | 45.0% | |
| ACCGTTTCAGAAAAAGCTGC+AGG | - | chr1_1:79259601-79259620 | Msa0046840:CDS | 45.0% | |
| TTCAGAAAAAGCTGCAGGAG+AGG | - | chr1_1:79259606-79259625 | Msa0046840:CDS | 45.0% | |
| TCTATCTCAGGGACAAACTC+AGG | - | chr1_1:79259942-79259961 | Msa0046840:intron | 45.0% | |
| CTATCTCAGGGACAAACTCA+GGG | - | chr1_1:79259943-79259962 | Msa0046840:intron | 45.0% | |
| CAATCACCCTCAGTTTGAAC+GGG | - | chr1_1:79259989-79260008 | Msa0046840:intron | 45.0% | |
| AATCACCCTCAGTTTGAACG+GGG | - | chr1_1:79259990-79260009 | Msa0046840:intron | 45.0% | |
| AATAGCCCCGTTCAAACTGA+GGG | + | chr1_1:79259998-79260017 | None:intergenic | 45.0% | |
| TAATAGCCCCGTTCAAACTG+AGG | + | chr1_1:79259999-79260018 | None:intergenic | 45.0% | |
| ATCTTTATGCTTGGCCTGCA+AGG | + | chr1_1:79261373-79261392 | None:intergenic | 45.0% | |
| CATGCCAATTGCACATTTGG+TGG | - | chr1_1:79261408-79261427 | Msa0046840:intron | 45.0% | |
| CACTCCACCAAATGTGCAAT+TGG | + | chr1_1:79261415-79261434 | None:intergenic | 45.0% | |
| ! | CAATTGCACATTTGGTGGAG+TGG | - | chr1_1:79261413-79261432 | Msa0046840:intron | 45.0% |
| GAGTGGATATATAGGCTGCT+TGG | - | chr1_1:79261430-79261449 | Msa0046840:intron | 45.0% | |
| ! | GAGGCACCTTCATTCCATAT+GGG | + | chr1_1:79261456-79261475 | None:intergenic | 45.0% |
| ! | TGAGGCACCTTCATTCCATA+TGG | + | chr1_1:79261457-79261476 | None:intergenic | 45.0% |
| !! | GTATGATGGGTGCATAGTCA+AGG | + | chr1_1:79261549-79261568 | None:intergenic | 45.0% |
| ! | CAGAACCTGTAGAGGTATGA+TGG | + | chr1_1:79261563-79261582 | None:intergenic | 45.0% |
| AAACGTCACAGAACCTGTAG+AGG | + | chr1_1:79261571-79261590 | None:intergenic | 45.0% | |
| !! | TTTTCTTGCAGGAGGGCATA+CGG | - | chr1_1:79261931-79261950 | Msa0046840:CDS | 45.0% |
| ! | TGATTTTCGGCCCTCAAATG+TGG | + | chr1_1:79261975-79261994 | None:intergenic | 45.0% |
| GCAGGAAGTTGCAGTAGTTT+AGG | - | chr1_1:79262269-79262288 | Msa0046840:intron | 45.0% | |
| TCAGTGTAACCTGCTAATGC+TGG | - | chr1_1:79262542-79262561 | Msa0046840:intron | 45.0% | |
| CAGTGTAACCTGCTAATGCT+GGG | - | chr1_1:79262543-79262562 | Msa0046840:intron | 45.0% | |
| ATACAACTCCCAGCATTAGC+AGG | + | chr1_1:79262554-79262573 | None:intergenic | 45.0% | |
| AGTGCAATGTGTCCAATAGC+TGG | + | chr1_1:79263048-79263067 | None:intergenic | 45.0% | |
| CTTTCTCAGTTGCCTCATCT+TGG | - | chr1_1:79263190-79263209 | Msa0046840:CDS | 45.0% | |
| CCCTTGCAGAAGGGAATAAT+TGG | - | chr1_1:79263238-79263257 | Msa0046840:intron | 45.0% | |
| CCCAATTATTCCCTTCTGCA+AGG | + | chr1_1:79263242-79263261 | None:intergenic | 45.0% | |
| AAGTTTGAATCCACGACCTC+AGG | + | chr1_1:79263325-79263344 | None:intergenic | 45.0% | |
| TCTTAAGTGAAAAGGCTCCC+AGG | + | chr1_1:79263407-79263426 | None:intergenic | 45.0% | |
| TCGCTTTCTCTCATGTTGTG+TGG | - | chr1_1:79263448-79263467 | Msa0046840:CDS | 45.0% | |
| TGATACAGGGAATTCCAACG+TGG | + | chr1_1:79263752-79263771 | None:intergenic | 45.0% | |
| ! | TGTAAACTTGCTCGGAGTAG+AGG | - | chr1_1:79263832-79263851 | Msa0046840:CDS | 45.0% |
| CCCAATCTAAATAGCTTCCC+AGG | + | chr1_1:79263945-79263964 | None:intergenic | 45.0% | |
| GTTTGCCGATGCCCTTATAT+GGG | - | chr1_1:79264002-79264021 | Msa0046840:CDS | 45.0% | |
| ! | CACATCCCATATAAGGGCAT+CGG | + | chr1_1:79264010-79264029 | None:intergenic | 45.0% |
| GCCCTTATATGGGATGTGAT+TGG | - | chr1_1:79264012-79264031 | Msa0046840:CDS | 45.0% | |
| CGGACACACACGAAAGAGTA+AGG | + | chr1_1:79258019-79258038 | None:intergenic | 50.0% | |
| !! | AAATGGTGATGGAACCGTCG+CGG | + | chr1_1:79258039-79258058 | None:intergenic | 50.0% |
| ATCGCAGCCGTAAATGGTGA+TGG | + | chr1_1:79258050-79258069 | None:intergenic | 50.0% | |
| !! | GGCTTGCAGTTGGTGAATCT+CGG | + | chr1_1:79258123-79258142 | None:intergenic | 50.0% |
| CACCCGAAAGTAGAGAAGGT+AGG | + | chr1_1:79258165-79258184 | None:intergenic | 50.0% | |
| CTCGGTCAAGCTTTACACTC+CGG | - | chr1_1:79258391-79258410 | Msa0046840:three_prime_UTR | 50.0% | |
| GGAGACATATTGAGCACGAC+CGG | + | chr1_1:79258413-79258432 | None:intergenic | 50.0% | |
| !! | GTAGGTACCGAAGGTGGATA+AGG | + | chr1_1:79258830-79258849 | None:intergenic | 50.0% |
| !! | GGTAAAGTAGGTACCGAAGG+TGG | + | chr1_1:79258836-79258855 | None:intergenic | 50.0% |
| TAGGGCGTATGCAACATGTC+AGG | + | chr1_1:79259112-79259131 | None:intergenic | 50.0% | |
| CCAGGTCCAAAAATGCTGCT+AGG | + | chr1_1:79259131-79259150 | None:intergenic | 50.0% | |
| !! | CCTAGCAGCATTTTTGGACC+TGG | - | chr1_1:79259128-79259147 | Msa0046840:CDS | 50.0% |
| GGCACCAACAGTTTATCACC+AGG | + | chr1_1:79259149-79259168 | None:intergenic | 50.0% | |
| ! | TTGGTTGATGCTGCAAAGGC+AGG | - | chr1_1:79259173-79259192 | Msa0046840:intron | 50.0% |
| ! | TGGTTGATGCTGCAAAGGCA+GGG | - | chr1_1:79259174-79259193 | Msa0046840:intron | 50.0% |
| TGCAAAGGCAGGGAAATCCA+AGG | - | chr1_1:79259184-79259203 | Msa0046840:intron | 50.0% | |
| GAGCTCGATCAGCACATATG+TGG | + | chr1_1:79259567-79259586 | None:intergenic | 50.0% | |
| ! | TGATCGAGCTCTAGCTTCAG+AGG | - | chr1_1:79259576-79259595 | Msa0046840:CDS | 50.0% |
| ! | GATCGAGCTCTAGCTTCAGA+GGG | - | chr1_1:79259577-79259596 | Msa0046840:CDS | 50.0% |
| TTGTTAGGATGTCAGCCCAC+TGG | + | chr1_1:79259898-79259917 | None:intergenic | 50.0% | |
| ! | GTGTCTGACAAGCTTGCTCT+TGG | - | chr1_1:79259965-79259984 | Msa0046840:intron | 50.0% |
| GTCAAAAGAGACATGCTGGC+TGG | - | chr1_1:79260681-79260700 | Msa0046840:intron | 50.0% | |
| GCTGGCATGTGACTATACTG+AGG | - | chr1_1:79260699-79260718 | Msa0046840:CDS | 50.0% | |
| TATAGGCTGCTTGGCCCATA+TGG | - | chr1_1:79261439-79261458 | Msa0046840:intron | 50.0% | |
| GCTTGGCCCATATGGAATGA+AGG | - | chr1_1:79261447-79261466 | Msa0046840:intron | 50.0% | |
| ATTCTTGAAGGGGTCAGCTG+AGG | + | chr1_1:79261475-79261494 | None:intergenic | 50.0% | |
| ! | TGATGGGTGCATAGTCAAGG+CGG | + | chr1_1:79261546-79261565 | None:intergenic | 50.0% |
| TGCACCCATCATACCTCTAC+AGG | - | chr1_1:79261555-79261574 | Msa0046840:intron | 50.0% | |
| GAACACCCCGTACAAGAAGT+AGG | + | chr1_1:79261885-79261904 | None:intergenic | 50.0% | |
| ACGTGTCAGCAACTGCAATG+TGG | + | chr1_1:79262618-79262637 | None:intergenic | 50.0% | |
| CAGTTGCTGACACGTTGCTT+TGG | - | chr1_1:79262623-79262642 | Msa0046840:intron | 50.0% | |
| ! | TGCTGACACGTTGCTTTGGA+AGG | - | chr1_1:79262627-79262646 | Msa0046840:intron | 50.0% |
| TCTGCTCGTTCTTAGCTTCC+TGG | - | chr1_1:79263386-79263405 | Msa0046840:intron | 50.0% | |
| CTGCTCGTTCTTAGCTTCCT+GGG | - | chr1_1:79263387-79263406 | Msa0046840:intron | 50.0% | |
| GGTTTGCCGATGCCCTTATA+TGG | - | chr1_1:79264001-79264020 | Msa0046840:CDS | 50.0% | |
| TGGCAAAGGCTCCTTTGAGT+CGG | - | chr1_1:79264129-79264148 | Msa0046840:five_prime_UTR | 50.0% | |
| TCTTTCGTGTGTGTCCGCGA+CGG | - | chr1_1:79258022-79258041 | Msa0046840:three_prime_UTR | 55.0% | |
| ! | GACGACAGTCGCCTTTTGTG+AGG | + | chr1_1:79258079-79258098 | None:intergenic | 55.0% |
| AAAGGCGACTGTCGTCGCAA+CGG | - | chr1_1:79258083-79258102 | Msa0046840:three_prime_UTR | 55.0% | |
| !! | GCAGTTGGTGAATCTCGGTG+CGG | + | chr1_1:79258118-79258137 | None:intergenic | 55.0% |
| TCACCAACTGCAAGCCTCAG+CGG | - | chr1_1:79258127-79258146 | Msa0046840:three_prime_UTR | 55.0% | |
| CGGACACCCGAAAGTAGAGA+AGG | + | chr1_1:79258169-79258188 | None:intergenic | 55.0% | |
| GCATTTGATTATGGCGGCGG+CGG | - | chr1_1:79258222-79258241 | Msa0046840:three_prime_UTR | 55.0% | |
| GAAAGGTGGTGTGTGGTCAC+CGG | - | chr1_1:79258247-79258266 | Msa0046840:three_prime_UTR | 55.0% | |
| !! | TGTGTCCGCATCGCCGATTT+GGG | - | chr1_1:79258328-79258347 | Msa0046840:three_prime_UTR | 55.0% |
| TGGATCCCAAATCGGCGATG+CGG | + | chr1_1:79258336-79258355 | None:intergenic | 55.0% | |
| AGCAACTAAAGCCGAGGGTG+AGG | - | chr1_1:79259052-79259071 | Msa0046840:CDS | 55.0% | |
| GCAACTAAAGCCGAGGGTGA+GGG | - | chr1_1:79259053-79259072 | Msa0046840:CDS | 55.0% | |
| TAAAGCCGAGGGTGAGGGAT+TGG | - | chr1_1:79259058-79259077 | Msa0046840:CDS | 55.0% | |
| TTTGATTATGGCGGCGGCGG+AGG | - | chr1_1:79258225-79258244 | Msa0046840:three_prime_UTR | 60.0% | |
| AGCAGCAAAGCCTCGTCCTC+CGG | + | chr1_1:79258269-79258288 | None:intergenic | 60.0% | |
| ATCGGCGATGCGGACACAGT+AGG | + | chr1_1:79258326-79258345 | None:intergenic | 60.0% | |
| ! | CTGTGTCCGCATCGCCGATT+TGG | - | chr1_1:79258327-79258346 | Msa0046840:three_prime_UTR | 60.0% |
| ! | TCTTGCAGGAGGGCATACGG+AGG | - | chr1_1:79261934-79261953 | Msa0046840:CDS | 60.0% |
| TTATGGCGGCGGCGGAGGAA+AGG | - | chr1_1:79258230-79258249 | Msa0046840:three_prime_UTR | 65.0% | |
| GGCGGAGGAAAGGTGGTGTG+TGG | - | chr1_1:79258240-79258259 | Msa0046840:three_prime_UTR | 65.0% | |
| AGGTGGTGTGTGGTCACCGG+AGG | - | chr1_1:79258250-79258269 | Msa0046840:three_prime_UTR | 65.0% | |
| TGTGTGGTCACCGGAGGACG+AGG | - | chr1_1:79258256-79258275 | Msa0046840:three_prime_UTR | 65.0% | |
| GCGCCGCTGAGGCTTGCAGT+TGG | + | chr1_1:79258133-79258152 | None:intergenic | 70.0% | |
| GGACGTGGATCGCGCCGCTG+AGG | + | chr1_1:79258144-79258163 | None:intergenic | 75.0% | |
| TGGCGGCGGCGGAGGAAAGG+TGG | - | chr1_1:79258233-79258252 | Msa0046840:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 79257966 | 79264307 | 79257966 | ID=Msa0046840;Name=Msa0046840 |
| chr1_1 | mRNA | 79257966 | 79264307 | 79257966 | ID=Msa0046840-mRNA-1;Parent=Msa0046840;Name=Msa0046840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=246|0.91|0.92|1|0.83|0.76|13|628|569 |
| chr1_1 | exon | 79257966 | 79258736 | 79257966 | ID=Msa0046840-mRNA-1:exon:27326;Parent=Msa0046840-mRNA-1 |
| chr1_1 | exon | 79258832 | 79258898 | 79258832 | ID=Msa0046840-mRNA-1:exon:27325;Parent=Msa0046840-mRNA-1 |
| chr1_1 | exon | 79258998 | 79259154 | 79258998 | ID=Msa0046840-mRNA-1:exon:27324;Parent=Msa0046840-mRNA-1 |
| chr1_1 | exon | 79259473 | 79259647 | 79259473 | ID=Msa0046840-mRNA-1:exon:27323;Parent=Msa0046840-mRNA-1 |
| chr1_1 | exon | 79260220 | 79260331 | 79260220 | ID=Msa0046840-mRNA-1:exon:27322;Parent=Msa0046840-mRNA-1 |
| chr1_1 | exon | 79260697 | 79260895 | 79260697 | ID=Msa0046840-mRNA-1:exon:27321;Parent=Msa0046840-mRNA-1 |
| chr1_1 | exon | 79261915 | 79261994 | 79261915 | ID=Msa0046840-mRNA-1:exon:27320;Parent=Msa0046840-mRNA-1 |
| chr1_1 | exon | 79262646 | 79262771 | 79262646 | ID=Msa0046840-mRNA-1:exon:27319;Parent=Msa0046840-mRNA-1 |
| chr1_1 | exon | 79263068 | 79263238 | 79263068 | ID=Msa0046840-mRNA-1:exon:27318;Parent=Msa0046840-mRNA-1 |
| chr1_1 | exon | 79263410 | 79263564 | 79263410 | ID=Msa0046840-mRNA-1:exon:27317;Parent=Msa0046840-mRNA-1 |
| chr1_1 | exon | 79263642 | 79263731 | 79263642 | ID=Msa0046840-mRNA-1:exon:27316;Parent=Msa0046840-mRNA-1 |
| chr1_1 | exon | 79263807 | 79264104 | 79263807 | ID=Msa0046840-mRNA-1:exon:27315;Parent=Msa0046840-mRNA-1 |
| chr1_1 | exon | 79264125 | 79264307 | 79264125 | ID=Msa0046840-mRNA-1:exon:27314;Parent=Msa0046840-mRNA-1 |
| chr1_1 | five_prime_UTR | 79264125 | 79264307 | 79264125 | ID=Msa0046840-mRNA-1:five_prime_utr;Parent=Msa0046840-mRNA-1 |
| chr1_1 | five_prime_UTR | 79264042 | 79264104 | 79264042 | ID=Msa0046840-mRNA-1:five_prime_utr;Parent=Msa0046840-mRNA-1 |
| chr1_1 | CDS | 79263807 | 79264041 | 79263807 | ID=Msa0046840-mRNA-1:cds;Parent=Msa0046840-mRNA-1 |
| chr1_1 | CDS | 79263642 | 79263731 | 79263642 | ID=Msa0046840-mRNA-1:cds;Parent=Msa0046840-mRNA-1 |
| chr1_1 | CDS | 79263410 | 79263564 | 79263410 | ID=Msa0046840-mRNA-1:cds;Parent=Msa0046840-mRNA-1 |
| chr1_1 | CDS | 79263068 | 79263238 | 79263068 | ID=Msa0046840-mRNA-1:cds;Parent=Msa0046840-mRNA-1 |
| chr1_1 | CDS | 79262646 | 79262771 | 79262646 | ID=Msa0046840-mRNA-1:cds;Parent=Msa0046840-mRNA-1 |
| chr1_1 | CDS | 79261915 | 79261994 | 79261915 | ID=Msa0046840-mRNA-1:cds;Parent=Msa0046840-mRNA-1 |
| chr1_1 | CDS | 79260697 | 79260895 | 79260697 | ID=Msa0046840-mRNA-1:cds;Parent=Msa0046840-mRNA-1 |
| chr1_1 | CDS | 79260220 | 79260331 | 79260220 | ID=Msa0046840-mRNA-1:cds;Parent=Msa0046840-mRNA-1 |
| chr1_1 | CDS | 79259473 | 79259647 | 79259473 | ID=Msa0046840-mRNA-1:cds;Parent=Msa0046840-mRNA-1 |
| chr1_1 | CDS | 79258998 | 79259154 | 79258998 | ID=Msa0046840-mRNA-1:cds;Parent=Msa0046840-mRNA-1 |
| chr1_1 | CDS | 79258832 | 79258898 | 79258832 | ID=Msa0046840-mRNA-1:cds;Parent=Msa0046840-mRNA-1 |
| chr1_1 | CDS | 79258594 | 79258736 | 79258594 | ID=Msa0046840-mRNA-1:cds;Parent=Msa0046840-mRNA-1 |
| chr1_1 | three_prime_UTR | 79257966 | 79258593 | 79257966 | ID=Msa0046840-mRNA-1:three_prime_utr;Parent=Msa0046840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
