Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439740 | XP_003603241.2 | 98.754 | 562 | 7 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439740 | sp|Q67ZE1|HSDD2_ARATH | 68.694 | 559 | 173 | 1 | 2 | 560 | 5 | 561 | 0.0 | 820 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439740 | G7J951 | 98.754 | 562 | 7 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1148 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046840 | Msa1439740 | 0.928599 | 2.299297e-92 | -8.615850e-47 |
| Msa1435110 | Msa1439740 | 0.870411 | 1.489636e-66 | -8.615850e-47 |
| Msa1439740 | Msa1463590 | 0.802812 | 4.697338e-49 | -8.615850e-47 |
| Msa0672420 | Msa1439740 | 0.814415 | 1.558576e-51 | -8.615850e-47 |
| Msa0382220 | Msa1439740 | 0.934069 | 7.141917e-96 | -8.615850e-47 |
| Msa0476540 | Msa1439740 | 0.818180 | 2.242638e-52 | -8.615850e-47 |
| Msa0945080 | Msa1439740 | 0.827213 | 1.770794e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439740 | MtrunA17_Chr3g0136511 | 98.754 | 562 | 7 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1148 |
| Msa1439740 | MtrunA17_Chr4g0033711 | 42.453 | 530 | 290 | 7 | 9 | 537 | 16 | 531 | 8.27e-132 | 396 |
| Msa1439740 | MtrunA17_Chr1g0157471 | 33.681 | 383 | 219 | 11 | 10 | 372 | 15 | 382 | 2.86e-47 | 172 |
| Msa1439740 | MtrunA17_Chr3g0133771 | 27.011 | 348 | 219 | 13 | 10 | 352 | 5 | 322 | 6.25e-20 | 91.3 |
| Msa1439740 | MtrunA17_Chr2g0314601 | 30.204 | 245 | 146 | 9 | 1 | 231 | 1 | 234 | 4.49e-16 | 81.6 |
| Msa1439740 | MtrunA17_Chr8g0359401 | 29.388 | 245 | 148 | 9 | 1 | 231 | 1 | 234 | 1.46e-15 | 80.1 |
| Msa1439740 | MtrunA17_Chr8g0348131 | 33.333 | 177 | 96 | 5 | 368 | 535 | 65 | 228 | 2.19e-13 | 70.5 |
| Msa1439740 | MtrunA17_Chr4g0005701 | 30.319 | 188 | 115 | 4 | 378 | 558 | 18 | 196 | 2.48e-12 | 66.2 |
| Msa1439740 | MtrunA17_Chr8g0387631 | 30.851 | 188 | 103 | 5 | 378 | 556 | 69 | 238 | 3.01e-12 | 67.0 |
| Msa1439740 | MtrunA17_Chr5g0423551 | 27.686 | 242 | 146 | 9 | 11 | 235 | 6 | 235 | 1.78e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1439740 | AT2G26260.1 | 68.694 | 559 | 173 | 1 | 2 | 560 | 5 | 561 | 0.0 | 820 |
| Msa1439740 | AT2G26260.2 | 69.280 | 472 | 143 | 1 | 89 | 560 | 1 | 470 | 0.0 | 696 |
| Msa1439740 | AT1G47290.2 | 67.114 | 447 | 127 | 3 | 6 | 449 | 9 | 438 | 0.0 | 635 |
| Msa1439740 | AT1G47290.1 | 74.176 | 364 | 94 | 0 | 6 | 369 | 9 | 372 | 0.0 | 593 |
| Msa1439740 | AT2G43420.1 | 40.614 | 554 | 311 | 7 | 9 | 555 | 15 | 557 | 8.42e-138 | 411 |
| Msa1439740 | AT2G33630.1 | 31.759 | 381 | 227 | 9 | 10 | 372 | 15 | 380 | 9.57e-43 | 160 |
| Msa1439740 | AT4G33360.1 | 26.503 | 366 | 211 | 15 | 10 | 360 | 16 | 338 | 1.41e-17 | 84.7 |
| Msa1439740 | AT4G33360.3 | 26.039 | 361 | 212 | 14 | 10 | 355 | 4 | 324 | 2.21e-17 | 84.0 |
| Msa1439740 | AT1G53500.1 | 29.661 | 236 | 141 | 9 | 10 | 231 | 12 | 236 | 2.70e-15 | 79.7 |
| Msa1439740 | AT3G14790.2 | 29.388 | 245 | 148 | 9 | 1 | 231 | 4 | 237 | 5.30e-15 | 78.6 |
| Msa1439740 | AT3G14790.1 | 29.388 | 245 | 148 | 9 | 1 | 231 | 1 | 234 | 6.62e-15 | 78.2 |
| Msa1439740 | AT4G33360.2 | 25.767 | 326 | 188 | 13 | 5 | 315 | 11 | 297 | 6.29e-13 | 70.1 |
| Msa1439740 | AT4G11220.1 | 29.255 | 188 | 106 | 5 | 378 | 556 | 80 | 249 | 3.67e-12 | 67.4 |
| Msa1439740 | AT3G61560.1 | 30.622 | 209 | 119 | 7 | 367 | 552 | 38 | 243 | 2.35e-11 | 64.7 |
| Msa1439740 | AT3G61560.2 | 30.622 | 209 | 119 | 7 | 367 | 552 | 38 | 243 | 2.35e-11 | 64.7 |
Find 179 sgRNAs with CRISPR-Local
Find 417 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTGCAGAAGGGAATAAT+TGG | 0.171596 | tig0028837:+49694 | Msa1439740:CDS |
| CTTTGAAGTAACAAACTTCT+TGG | 0.203034 | tig0028837:-50102 | None:intergenic |
| CGTCCTACCTTCTCTACTTT+CGG | 0.230913 | tig0028837:+44615 | Msa1439740:intron |
| GGCATATTTCATTACGAATA+TGG | 0.231821 | tig0028837:+46736 | Msa1439740:intron |
| TCTGCTCGTTCTTAGCTTCC+TGG | 0.240047 | tig0028837:+49842 | Msa1439740:CDS |
| CACCAATCACATCCCATATA+AGG | 0.242796 | tig0028837:-50467 | None:intergenic |
| ATGAACTCCCAAAACTTTAT+AGG | 0.247483 | tig0028837:-46761 | None:intergenic |
| GGTTTGCCGATGCCCTTATA+TGG | 0.252412 | tig0028837:+50454 | Msa1439740:three_prime_UTR |
| GGAGTTCATGTCTCTAATTT+TGG | 0.253874 | tig0028837:+46775 | Msa1439740:CDS |
| TTCCAGACTGCATTTGATTA+TGG | 0.254715 | tig0028837:+44669 | Msa1439740:exon |
| AACAAACCTCAACTCTTAAA+AGG | 0.261492 | tig0028837:+44901 | Msa1439740:CDS |
| TATGACCCATGTCATGTTAC+AGG | 0.265492 | tig0028837:-50616 | None:intergenic |
| GTCCTACCTTCTCTACTTTC+GGG | 0.300281 | tig0028837:+44616 | Msa1439740:intron |
| ATATGGAACCTATAAAGTTT+TGG | 0.301633 | tig0028837:+46753 | Msa1439740:CDS |
| CACTCCTATCGGAATTTAAT+CGG | 0.325259 | tig0028837:+50433 | Msa1439740:three_prime_UTR |
| CTTTCTCAGTTGCCTCATCT+TGG | 0.333806 | tig0028837:+49646 | Msa1439740:CDS |
| CTGTGTCCGCATCGCCGATT+TGG | 0.334227 | tig0028837:+44783 | Msa1439740:CDS |
| GGATTGGTTATTAAGGCTAA+TGG | 0.351234 | tig0028837:+45531 | Msa1439740:CDS |
| GGGTGAGGGATTGGTTATTA+AGG | 0.352725 | tig0028837:+45524 | Msa1439740:CDS |
| ATGTGATTGGTGATTATCTT+TGG | 0.355141 | tig0028837:+50478 | Msa1439740:three_prime_UTR |
| CTTGAACCCTCTGAGCAATT+AGG | 0.355569 | tig0028837:+44820 | Msa1439740:CDS |
| TAGTTGTTTAAAGAAGAATT+TGG | 0.361224 | tig0028837:-45036 | None:intergenic |
| TTCTCTTACCAGTTCATTGT+TGG | 0.367722 | tig0028837:+45947 | Msa1439740:intron |
| TATCATGCCAATTGCACATT+TGG | 0.370214 | tig0028837:+47861 | Msa1439740:CDS |
| ACCTGGGAAGCTATTTAGAT+TGG | 0.370608 | tig0028837:+50394 | Msa1439740:three_prime_UTR |
| GACGGTTCCATCACCATTTA+CGG | 0.371919 | tig0028837:+44496 | Msa1439740:five_prime_UTR |
| CTTAAGAACTTGTATACTAT+AGG | 0.373557 | tig0028837:+49876 | Msa1439740:CDS |
| AGAGATATCGCAGCCGTAAA+TGG | 0.375439 | tig0028837:-44509 | None:intergenic |
| TTAATCTCTGCAGCATTTGA+AGG | 0.382000 | tig0028837:+44985 | Msa1439740:intron |
| TCGATCGGTTTATTCATTCA+TGG | 0.385542 | tig0028837:+49216 | Msa1439740:CDS |
| GGAATTCATGGAATTCATAA+TGG | 0.386447 | tig0028837:+45248 | Msa1439740:CDS |
| TTACTTCAAAGATTGATTGA+TGG | 0.390041 | tig0028837:+50114 | Msa1439740:CDS |
| TGCTTCACCTTCAACATTGA+CGG | 0.391665 | tig0028837:-45073 | None:intergenic |
| TATAGGCTGCTTGGCCCATA+TGG | 0.393052 | tig0028837:+47895 | Msa1439740:CDS |
| TCCAAAGCTTCTGTATATCT+TGG | 0.393295 | tig0028837:+48476 | Msa1439740:CDS |
| CAATAATTGTACAATGATAC+AGG | 0.395876 | tig0028837:-50217 | None:intergenic |
| TCCAAGATATACAGAAGCTT+TGG | 0.397177 | tig0028837:-48477 | None:intergenic |
| CACTCCACCAAATGTGCAAT+TGG | 0.401026 | tig0028837:-47868 | None:intergenic |
| TGAGGCACCTTCATTCCATA+TGG | 0.412154 | tig0028837:-47910 | None:intergenic |
| GATGTGAGTCTTATTCTTGA+AGG | 0.416433 | tig0028837:-47940 | None:intergenic |
| CATCATTCCGTCAATGTTGA+AGG | 0.420093 | tig0028837:+45066 | Msa1439740:CDS |
| CATGCCAATTGCACATTTGG+TGG | 0.425591 | tig0028837:+47864 | Msa1439740:CDS |
| TGTGTCCGCATCGCCGATTT+GGG | 0.426692 | tig0028837:+44784 | Msa1439740:CDS |
| TAAACTGTTGGTGCCTTCAT+TGG | 0.429069 | tig0028837:+45611 | Msa1439740:CDS |
| TCTGAGCAATTAGGTCTTCT+CGG | 0.432974 | tig0028837:+44829 | Msa1439740:CDS |
| ACCAATCACATCCCATATAA+GGG | 0.435378 | tig0028837:-50466 | None:intergenic |
| GATTGGTTATTAAGGCTAAT+GGG | 0.435448 | tig0028837:+45532 | Msa1439740:CDS |
| AAGAATTTGGAGCAGCCATA+TGG | 0.438027 | tig0028837:-45023 | None:intergenic |
| TTGGTTGATGCTGCAAAGGC+AGG | 0.438220 | tig0028837:+45630 | Msa1439740:CDS |
| CTCAGAGGGTTCAAGTTCAA+TGG | 0.441397 | tig0028837:-44812 | None:intergenic |
| CGGACACACACGAAAGAGTA+AGG | 0.444460 | tig0028837:-44472 | None:intergenic |
| ATCGTTGCCTTATCCACCTT+CGG | 0.448632 | tig0028837:+45277 | Msa1439740:CDS |
| ATTTGGTGGAGTGGATATAT+AGG | 0.449440 | tig0028837:+47878 | Msa1439740:CDS |
| CAGAACCTGTAGAGGTATGA+TGG | 0.450369 | tig0028837:-48016 | None:intergenic |
| AGCAGCAAAGCCTCGTCCTC+CGG | 0.454833 | tig0028837:-44722 | None:intergenic |
| GTTTGCCGATGCCCTTATAT+GGG | 0.455839 | tig0028837:+50455 | Msa1439740:three_prime_UTR |
| CTGCTCGTTCTTAGCTTCCT+GGG | 0.460258 | tig0028837:+49843 | Msa1439740:CDS |
| ATACAAGTTCTTAAGTGAAA+AGG | 0.460456 | tig0028837:-49868 | None:intergenic |
| CCTGGGAAGCTATTTAGATT+GGG | 0.461171 | tig0028837:+50395 | Msa1439740:three_prime_UTR |
| TACCAGTTCATTGTTGGTGA+TGG | 0.464034 | tig0028837:+45953 | Msa1439740:intron |
| TTCAATGGTGGATCCCAAAT+CGG | 0.464651 | tig0028837:-44797 | None:intergenic |
| TAAAGCCGAGGGTGAGGGAT+TGG | 0.474854 | tig0028837:+45515 | Msa1439740:CDS |
| TTTGATTATGGCGGCGGCGG+AGG | 0.475500 | tig0028837:+44681 | Msa1439740:exon |
| GTAGGTACCGAAGGTGGATA+AGG | 0.477922 | tig0028837:-45284 | None:intergenic |
| CCCAATCTAAATAGCTTCCC+AGG | 0.481548 | tig0028837:-50395 | None:intergenic |
| GTATATCTTGGAAGTGGAAG+AGG | 0.485555 | tig0028837:+48488 | Msa1439740:CDS |
| CAGTTGCTGACACGTTGCTT+TGG | 0.485790 | tig0028837:+49079 | Msa1439740:intron |
| CGCCATAATCAAATGCAGTC+TGG | 0.486266 | tig0028837:-44671 | None:intergenic |
| AGCAACTAAAGCCGAGGGTG+AGG | 0.494138 | tig0028837:+45509 | Msa1439740:CDS |
| GCTTAAAATGTTGTGGGTGG+AGG | 0.498918 | tig0028837:+50360 | Msa1439740:three_prime_UTR |
| GGCTTGCAGTTGGTGAATCT+CGG | 0.500925 | tig0028837:-44576 | None:intergenic |
| AGGTTTGTTGCGAAGATCGA+CGG | 0.502657 | tig0028837:-44887 | None:intergenic |
| TTATAAAATAAGAAATGTCA+TGG | 0.504092 | tig0028837:-50731 | None:intergenic |
| TGCACCCATCATACCTCTAC+AGG | 0.507092 | tig0028837:+48011 | Msa1439740:CDS |
| GCATTTGATTATGGCGGCGG+CGG | 0.508585 | tig0028837:+44678 | Msa1439740:exon |
| GAAAGGTGGTGTGTGGTCAC+CGG | 0.510184 | tig0028837:+44703 | Msa1439740:CDS |
| AAGATATACAGAAGCTTTGG+AGG | 0.510237 | tig0028837:-48474 | None:intergenic |
| TCGAATCATATCCACATTTG+AGG | 0.511233 | tig0028837:+48417 | Msa1439740:CDS |
| TGCTGACACGTTGCTTTGGA+AGG | 0.511938 | tig0028837:+49083 | Msa1439740:CDS |
| TGTGTGGTCACCGGAGGACG+AGG | 0.512379 | tig0028837:+44712 | Msa1439740:CDS |
| GCGATATCTCTCCTCACAAA+AGG | 0.515045 | tig0028837:+44521 | Msa1439740:five_prime_UTR |
| ATGTGAGTCTTATTCTTGAA+GGG | 0.515692 | tig0028837:-47939 | None:intergenic |
| GCTTCTGTATATCTTGGAAG+TGG | 0.518379 | tig0028837:+48482 | Msa1439740:CDS |
| TTGAGAAAATGCCCACATCA+TGG | 0.518767 | tig0028837:+49589 | Msa1439740:CDS |
| GCAACTAAAGCCGAGGGTGA+GGG | 0.520116 | tig0028837:+45510 | Msa1439740:CDS |
| TTTGCAGCATCAACCAATGA+AGG | 0.520481 | tig0028837:-45624 | None:intergenic |
| TGCAGCATTTGAAGGAGTTG+AGG | 0.521031 | tig0028837:+44993 | Msa1439740:intron |
| CCAATTATTCCCTTCTGCAA+GGG | 0.522767 | tig0028837:-49694 | None:intergenic |
| CCCAATTATTCCCTTCTGCA+AGG | 0.526936 | tig0028837:-49695 | None:intergenic |
| ACTGCATTTGATTATGGCGG+CGG | 0.527486 | tig0028837:+44675 | Msa1439740:exon |
| GAGCTCGATCAGCACATATG+TGG | 0.527742 | tig0028837:-46021 | None:intergenic |
| TGGAAGGTCTTGGATATCAA+AGG | 0.529691 | tig0028837:+46795 | Msa1439740:CDS |
| CCTTGCAGAAGGGAATAATT+GGG | 0.540074 | tig0028837:+49695 | Msa1439740:CDS |
| TTATGGCGGCGGCGGAGGAA+AGG | 0.542684 | tig0028837:+44686 | Msa1439740:exon |
| TGGCGGCGGCGGAGGAAAGG+TGG | 0.543511 | tig0028837:+44689 | Msa1439740:CDS |
| AAGAGAGCTTAAAATGTTGT+GGG | 0.546222 | tig0028837:+50354 | Msa1439740:three_prime_UTR |
| CGAATCATATCCACATTTGA+GGG | 0.546936 | tig0028837:+48418 | Msa1439740:CDS |
| CTTCTATTATACTCATCGAT+CGG | 0.547051 | tig0028837:+49201 | Msa1439740:CDS |
| CAGACTGCATTTGATTATGG+CGG | 0.547350 | tig0028837:+44672 | Msa1439740:exon |
| TTGAGCAAACATGACTCAAA+GGG | 0.547821 | tig0028837:-50504 | None:intergenic |
| CATCTTCATTTAATCCACGT+TGG | 0.548065 | tig0028837:+50189 | Msa1439740:three_prime_UTR |
| TGATTGGTGATTATCTTTGG+CGG | 0.548486 | tig0028837:+50481 | Msa1439740:three_prime_UTR |
| TTCATTGGTTGATGCTGCAA+AGG | 0.548711 | tig0028837:+45626 | Msa1439740:CDS |
| TAGGGCGTATGCAACATGTC+AGG | 0.552269 | tig0028837:-45566 | None:intergenic |
| TGGAGGTTGATTGATAAACC+TGG | 0.552468 | tig0028837:+50377 | Msa1439740:three_prime_UTR |
| ATTGGCATGATAACAAAGAC+AGG | 0.553368 | tig0028837:-47850 | None:intergenic |
| GTAGAAAGCTGTAAATGCTA+AGG | 0.553726 | tig0028837:-49997 | None:intergenic |
| GAGTGGATATATAGGCTGCT+TGG | 0.554338 | tig0028837:+47886 | Msa1439740:CDS |
| GGACACAGTAGGTGTTCAAT+CGG | 0.555516 | tig0028837:-44768 | None:intergenic |
| AAGACAGGGATCTTTATGCT+TGG | 0.556912 | tig0028837:-47835 | None:intergenic |
| GCAGTCTGGAAGGTTAGTTA+TGG | 0.557136 | tig0028837:-44657 | None:intergenic |
| AAAGAGAGCTTAAAATGTTG+TGG | 0.558078 | tig0028837:+50353 | Msa1439740:three_prime_UTR |
| TGTAAACTTGCTCGGAGTAG+AGG | 0.558240 | tig0028837:+50285 | Msa1439740:three_prime_UTR |
| CTTTGTAAGAGCAGTAATGA+AGG | 0.563257 | tig0028837:-49178 | None:intergenic |
| CACATCCCATATAAGGGCAT+CGG | 0.564155 | tig0028837:-50460 | None:intergenic |
| ATCGCAGCCGTAAATGGTGA+TGG | 0.564493 | tig0028837:-44503 | None:intergenic |
| TCTTTCGTGTGTGTCCGCGA+CGG | 0.564998 | tig0028837:+44478 | Msa1439740:five_prime_UTR |
| TCTTAAGTGAAAAGGCTCCC+AGG | 0.566172 | tig0028837:-49860 | None:intergenic |
| CAACTTAAGTCTAAAAGAGA+AGG | 0.566200 | tig0028837:+48449 | Msa1439740:CDS |
| GCATTAAAATCCCTTGCAGA+AGG | 0.567802 | tig0028837:+49684 | Msa1439740:CDS |
| GCGCCGCTGAGGCTTGCAGT+TGG | 0.573654 | tig0028837:-44586 | None:intergenic |
| TGGACCTGGTGATAAACTGT+TGG | 0.573810 | tig0028837:+45599 | Msa1439740:CDS |
| GCTTGGCCCATATGGAATGA+AGG | 0.577124 | tig0028837:+47903 | Msa1439740:CDS |
| TTTCACATATGTTGAAAATG+TGG | 0.577379 | tig0028837:+45991 | Msa1439740:CDS |
| TCAAAACCTGTAACATGACA+TGG | 0.578204 | tig0028837:+50610 | Msa1439740:three_prime_UTR |
| GAGGCACCTTCATTCCATAT+GGG | 0.580167 | tig0028837:-47909 | None:intergenic |
| TTTGAGCAAACATGACTCAA+AGG | 0.583039 | tig0028837:-50505 | None:intergenic |
| AGAAGACCTAATTGCTCAGA+GGG | 0.584128 | tig0028837:-44826 | None:intergenic |
| GCCCTTATATGGGATGTGAT+TGG | 0.584219 | tig0028837:+50465 | Msa1439740:three_prime_UTR |
| GGCGGAGGAAAGGTGGTGTG+TGG | 0.587912 | tig0028837:+44696 | Msa1439740:CDS |
| CACAGCAAAATTCCAAGATG+AGG | 0.589243 | tig0028837:-49658 | None:intergenic |
| TGATCGAGCTCTAGCTTCAG+AGG | 0.590757 | tig0028837:+46033 | Msa1439740:CDS |
| TGTGAGTCTTATTCTTGAAG+GGG | 0.592528 | tig0028837:-47938 | None:intergenic |
| CATTAAAATCCCTTGCAGAA+GGG | 0.592814 | tig0028837:+49685 | Msa1439740:CDS |
| AGAACCTGTAGAGGTATGAT+GGG | 0.594321 | tig0028837:-48015 | None:intergenic |
| AGCTCGATCAGCACATATGT+GGG | 0.596317 | tig0028837:-46020 | None:intergenic |
| GTATGATGGGTGCATAGTCA+AGG | 0.599231 | tig0028837:-48002 | None:intergenic |
| CATTGACGGAATGATGAAGC+TGG | 0.600987 | tig0028837:-45059 | None:intergenic |
| TCACCAACTGCAAGCCTCAG+CGG | 0.601878 | tig0028837:+44583 | Msa1439740:five_prime_UTR |
| GGACGTGGATCGCGCCGCTG+AGG | 0.602311 | tig0028837:-44597 | None:intergenic |
| GGAGACATATTGAGCACGAC+CGG | 0.604728 | tig0028837:-44866 | None:intergenic |
| AATAACCAATCCCTCACCCT+CGG | 0.605731 | tig0028837:-45520 | None:intergenic |
| TTACTCAGCAACTAAAGCCG+AGG | 0.607635 | tig0028837:+45503 | Msa1439740:CDS |
| ATTCTTGAAGGGGTCAGCTG+AGG | 0.610389 | tig0028837:-47928 | None:intergenic |
| ATAATCAAATGCAGTCTGGA+AGG | 0.612641 | tig0028837:-44667 | None:intergenic |
| AGGTGGTGTGTGGTCACCGG+AGG | 0.612663 | tig0028837:+44706 | Msa1439740:CDS |
| TGGTTGATGCTGCAAAGGCA+GGG | 0.613832 | tig0028837:+45631 | Msa1439740:CDS |
| CTCGGTCAAGCTTTACACTC+CGG | 0.614278 | tig0028837:+44847 | Msa1439740:CDS |
| ATTAAGGCTAATGGGACTAG+TGG | 0.621571 | tig0028837:+45540 | Msa1439740:CDS |
| GAGAAGACCTAATTGCTCAG+AGG | 0.625054 | tig0028837:-44827 | None:intergenic |
| TGGCAAAGGCTCCTTTGAGT+CGG | 0.625999 | tig0028837:+50582 | Msa1439740:three_prime_UTR |
| CAATTGCACATTTGGTGGAG+TGG | 0.628998 | tig0028837:+47869 | Msa1439740:CDS |
| GGAGGTTGATTGATAAACCT+GGG | 0.629009 | tig0028837:+50378 | Msa1439740:three_prime_UTR |
| AGAGGGTTCAAGTTCAATGG+TGG | 0.630912 | tig0028837:-44809 | None:intergenic |
| GGCACCAACAGTTTATCACC+AGG | 0.633574 | tig0028837:-45603 | None:intergenic |
| CGGACACCCGAAAGTAGAGA+AGG | 0.635370 | tig0028837:-44622 | None:intergenic |
| TACTCAGCAACTAAAGCCGA+GGG | 0.636180 | tig0028837:+45504 | Msa1439740:CDS |
| GATCGAGCTCTAGCTTCAGA+GGG | 0.640107 | tig0028837:+46034 | Msa1439740:CDS |
| GGTAAAGTAGGTACCGAAGG+TGG | 0.641463 | tig0028837:-45290 | None:intergenic |
| AGAGCTTAAAATGTTGTGGG+TGG | 0.642624 | tig0028837:+50357 | Msa1439740:three_prime_UTR |
| AAAGGCGACTGTCGTCGCAA+CGG | 0.646567 | tig0028837:+44539 | Msa1439740:five_prime_UTR |
| AAACGTCACAGAACCTGTAG+AGG | 0.648903 | tig0028837:-48024 | None:intergenic |
| TGATAAGTGAAACCATGATG+TGG | 0.662199 | tig0028837:-49601 | None:intergenic |
| AGATATACAGAAGCTTTGGA+GGG | 0.663079 | tig0028837:-48473 | None:intergenic |
| ATCGGCGATGCGGACACAGT+AGG | 0.665728 | tig0028837:-44779 | None:intergenic |
| GGACACACACGAAAGAGTAA+GGG | 0.672386 | tig0028837:-44471 | None:intergenic |
| CAAACCGATTAAATTCCGAT+AGG | 0.672562 | tig0028837:-50437 | None:intergenic |
| AGTTATGGATCACAGAGTCA+CGG | 0.675946 | tig0028837:-44642 | None:intergenic |
| TGCAAAGGCAGGGAAATCCA+AGG | 0.678227 | tig0028837:+45641 | Msa1439740:CDS |
| TGGATCCCAAATCGGCGATG+CGG | 0.678949 | tig0028837:-44789 | None:intergenic |
| GATAAGTGAAACCATGATGT+GGG | 0.683459 | tig0028837:-49600 | None:intergenic |
| CAAAACCTGTAACATGACAT+GGG | 0.684151 | tig0028837:+50611 | Msa1439740:three_prime_UTR |
| AATAATTGTACAATGATACA+GGG | 0.693390 | tig0028837:-50216 | None:intergenic |
| TCTTGCAGGAGGGCATACGG+AGG | 0.702619 | tig0028837:+48390 | Msa1439740:intron |
| GCAGTTGGTGAATCTCGGTG+CGG | 0.718655 | tig0028837:-44571 | None:intergenic |
| AAATGGTGATGGAACCGTCG+CGG | 0.723389 | tig0028837:-44492 | None:intergenic |
| TTGGCATGATAACAAAGACA+GGG | 0.735805 | tig0028837:-47849 | None:intergenic |
| TGATGGGTGCATAGTCAAGG+CGG | 0.737283 | tig0028837:-47999 | None:intergenic |
| TGATACAGGGAATTCCAACG+TGG | 0.825223 | tig0028837:-50203 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTATTTTTTTAATGAAATA+AGG | + | tig0028837:47714-47733 | Msa1439740:intron | 10.0% |
| !!! | TATGTTTATATTAGTTTATT+TGG | - | tig0028837:47761-47780 | None:intergenic | 10.0% |
| !! | AACTAATATAAACATAATTA+TGG | + | tig0028837:47765-47784 | Msa1439740:intron | 10.0% |
| !! | ATATTAAAAAAAAAAAACGT+TGG | + | tig0028837:48683-48702 | Msa1439740:intron | 10.0% |
| !! | TATGTATATTATCTTTAAAT+AGG | - | tig0028837:49401-49420 | None:intergenic | 10.0% |
| !! | ATATAATTTAATCTAGCTAT+TGG | + | tig0028837:45411-45430 | Msa1439740:intron | 15.0% |
| !! | TATAATTTAATCTAGCTATT+GGG | + | tig0028837:45412-45431 | Msa1439740:intron | 15.0% |
| !! | ATAAATCATCAATTAAAGAA+AGG | - | tig0028837:45923-45942 | None:intergenic | 15.0% |
| !! | AAACAATGTTAATATGTTAA+AGG | + | tig0028837:46260-46279 | Msa1439740:intron | 15.0% |
| !!! | TTTAATTTCATTTTTTGCTT+AGG | - | tig0028837:47014-47033 | None:intergenic | 15.0% |
| !!! | TTTTTAAAATCACATACTTT+TGG | + | tig0028837:50056-50075 | Msa1439740:CDS | 15.0% |
| !! | TTATAAAATAAGAAATGTCA+TGG | - | tig0028837:50734-50753 | None:intergenic | 15.0% |
| !! | TAGTTGTTTAAAGAAGAATT+TGG | - | tig0028837:45039-45058 | None:intergenic | 20.0% |
| !!! | TAACTTTCATTTTTTTGACT+TGG | + | tig0028837:45325-45344 | Msa1439740:intron | 20.0% |
| !! | TTGTTAAACTTAGTTAGATT+CGG | + | tig0028837:46601-46620 | Msa1439740:intron | 20.0% |
| !!! | ATGATAAATACTTGTTTTGT+AGG | + | tig0028837:46715-46734 | Msa1439740:intron | 20.0% |
| !!! | GTTTTATTCCATAATATTGA+AGG | + | tig0028837:47203-47222 | Msa1439740:intron | 20.0% |
| !! | AAAGATAATAATTAATAGCC+AGG | - | tig0028837:47308-47327 | None:intergenic | 20.0% |
| !! | AATCCAAATAAGCTATAAAT+AGG | - | tig0028837:47353-47372 | None:intergenic | 20.0% |
| !! | TAATTAAGCATATATTGAGT+AGG | - | tig0028837:47544-47563 | None:intergenic | 20.0% |
| !!! | AATTAAGTTGTTTATCCAAA+TGG | + | tig0028837:47559-47578 | Msa1439740:intron | 20.0% |
| !! | CATAAAAAAAAAACCGTTAA+GGG | - | tig0028837:47631-47650 | None:intergenic | 20.0% |
| !! | TGAAATAAGGAATACATTTA+CGG | + | tig0028837:47727-47746 | Msa1439740:intron | 20.0% |
| !! | TGTTCTTCATGTTTAATTAA+GGG | + | tig0028837:48356-48375 | Msa1439740:intron | 20.0% |
| !!! | TTTAGACTTAAGTTGATTTT+CGG | - | tig0028837:48444-48463 | None:intergenic | 20.0% |
| !! | CCAAAACAAAAATAACAAAA+AGG | - | tig0028837:48568-48587 | None:intergenic | 20.0% |
| !!! | CCTTTTTGTTATTTTTGTTT+TGG | + | tig0028837:48565-48584 | Msa1439740:intron | 20.0% |
| !! | AACTCTTAAAGTTCAAATTT+CGG | + | tig0028837:48876-48895 | Msa1439740:intron | 20.0% |
| !! | TTTCTACGTTTATGAAAAAA+AGG | + | tig0028837:50013-50032 | Msa1439740:CDS | 20.0% |
| !! | AATAATTGTACAATGATACA+GGG | - | tig0028837:50219-50238 | None:intergenic | 20.0% |
| !! | TTCTACCAAAAAAATTGATA+TGG | + | tig0028837:50562-50581 | Msa1439740:three_prime_UTR | 20.0% |
| !!! | GTTGTTTTGTTTTGGTATTA+AGG | - | tig0028837:44931-44950 | None:intergenic | 25.0% |
| !!! | TGTAGAATGTTGTTTTGTTT+TGG | - | tig0028837:44939-44958 | None:intergenic | 25.0% |
| !!! | AGTTAGGTGTTTATTTTTGA+AGG | + | tig0028837:45143-45162 | Msa1439740:intron | 25.0% |
| !! | TAGGTTCAAAATGTTTGTTA+TGG | + | tig0028837:45442-45461 | Msa1439740:intron | 25.0% |
| ! | AATAAGTAATCCAATACTCA+CGG | + | tig0028837:45717-45736 | Msa1439740:intron | 25.0% |
| ! | TTTCACATATGTTGAAAATG+TGG | + | tig0028837:45991-46010 | Msa1439740:CDS | 25.0% |
| ! | GCATGACTAAAAAAGTTATA+TGG | - | tig0028837:46091-46110 | None:intergenic | 25.0% |
| ! | TTGTAAATGAAAGATAAGAG+AGG | + | tig0028837:46122-46141 | Msa1439740:intron | 25.0% |
| !!! | TGATGGTGTATTTTAAGATT+TGG | + | tig0028837:46159-46178 | Msa1439740:intron | 25.0% |
| ! | TAAAGGTAGAAACATTTATC+TGG | + | tig0028837:46277-46296 | Msa1439740:intron | 25.0% |
| ! | AAAGGTAGAAACATTTATCT+GGG | + | tig0028837:46278-46297 | Msa1439740:intron | 25.0% |
| !!! | ATTGAGTATTGCATTTTTTG+TGG | + | tig0028837:46625-46644 | Msa1439740:intron | 25.0% |
| !! | ATATGGAACCTATAAAGTTT+TGG | + | tig0028837:46753-46772 | Msa1439740:CDS | 25.0% |
| !! | TATGGAACCTATAAAGTTTT+GGG | + | tig0028837:46754-46773 | Msa1439740:CDS | 25.0% |
| !!! | GTCTCTTTTGACTATAAATA+GGG | - | tig0028837:47132-47151 | None:intergenic | 25.0% |
| !!! | TGTCTCTTTTGACTATAAAT+AGG | - | tig0028837:47133-47152 | None:intergenic | 25.0% |
| !!! | ATCTTTTTTTTTTGTGCGTT+TGG | + | tig0028837:47322-47341 | Msa1439740:intron | 25.0% |
| ! | GCTTATTTGGATTTATCTTA+TGG | + | tig0028837:47360-47379 | Msa1439740:intron | 25.0% |
| !! | TAGCTTATGATATCTTTTAG+CGG | + | tig0028837:47419-47438 | Msa1439740:intron | 25.0% |
| ! | CTTATTTCAATAAGCTCTAT+AGG | + | tig0028837:47449-47468 | Msa1439740:intron | 25.0% |
| !! | TACTTTTCATATAAGCACTT+AGG | - | tig0028837:47521-47540 | None:intergenic | 25.0% |
| ! | TATTAAATAAGGATGCCATT+TGG | - | tig0028837:47577-47596 | None:intergenic | 25.0% |
| ! | GATCAGGTGTTTATTAAATA+AGG | - | tig0028837:47588-47607 | None:intergenic | 25.0% |
| ! | GCATAAAAAAAAAACCGTTA+AGG | - | tig0028837:47632-47651 | None:intergenic | 25.0% |
| !! | TATGAGATGTGATTCTAAAA+TGG | + | tig0028837:48261-48280 | Msa1439740:intron | 25.0% |
| ! | GTGTTCTTCATGTTTAATTA+AGG | + | tig0028837:48355-48374 | Msa1439740:intron | 25.0% |
| ! | AAAAATTGCAAAGATAATGC+AGG | + | tig0028837:48707-48726 | Msa1439740:intron | 25.0% |
| ! | TAGTAAAAAATTAGGAATGG+TGG | - | tig0028837:48926-48945 | None:intergenic | 25.0% |
| ! | CACTAGTAAAAAATTAGGAA+TGG | - | tig0028837:48929-48948 | None:intergenic | 25.0% |
| ! | GTGATCACTAGTAAAAAATT+AGG | - | tig0028837:48934-48953 | None:intergenic | 25.0% |
| ! | GAGAAATTATTTCCTGAATA+AGG | - | tig0028837:49457-49476 | None:intergenic | 25.0% |
| !! | AGTCAATTTTATATATCCTG+AGG | + | tig0028837:49762-49781 | Msa1439740:intron | 25.0% |
| ! | ATACAAGTTCTTAAGTGAAA+AGG | - | tig0028837:49871-49890 | None:intergenic | 25.0% |
| ! | CTTAAGAACTTGTATACTAT+AGG | + | tig0028837:49876-49895 | Msa1439740:CDS | 25.0% |
| !!! | TTTGTTATTGTCTTTGTTAC+AGG | + | tig0028837:49969-49988 | Msa1439740:intron | 25.0% |
| ! | TTACTTCAAAGATTGATTGA+TGG | + | tig0028837:50114-50133 | Msa1439740:CDS | 25.0% |
| ! | CAATAATTGTACAATGATAC+AGG | - | tig0028837:50220-50239 | None:intergenic | 25.0% |
| ! | AAACTCAAAAAAACATCTAC+TGG | - | tig0028837:50259-50278 | None:intergenic | 25.0% |
| !!! | TTTTGTAATGTAAACTTGCT+CGG | + | tig0028837:50277-50296 | Msa1439740:three_prime_UTR | 25.0% |
| !! | TAAAATTTTGTCACTCCTAT+CGG | + | tig0028837:50422-50441 | Msa1439740:three_prime_UTR | 25.0% |
| ! | GATACATCAGAAAAAAACAA+TGG | - | tig0028837:50536-50555 | None:intergenic | 25.0% |
| !!! | CTTTGCCATATCAATTTTTT+TGG | - | tig0028837:50570-50589 | None:intergenic | 25.0% |
| ! | CAAAAAAATTGATATGGCAA+AGG | + | tig0028837:50568-50587 | Msa1439740:three_prime_UTR | 25.0% |
| AACAAACCTCAACTCTTAAA+AGG | + | tig0028837:44901-44920 | Msa1439740:CDS | 30.0% | |
| TGTTTCTTTCGATCTAAGTT+AGG | + | tig0028837:45127-45146 | Msa1439740:intron | 30.0% | |
| ATTCCATCAAAAACAACACT+GGG | - | tig0028837:45233-45252 | None:intergenic | 30.0% | |
| AATTCCATCAAAAACAACAC+TGG | - | tig0028837:45234-45253 | None:intergenic | 30.0% | |
| !!! | GTTGTTTTTGATGGAATTCA+TGG | + | tig0028837:45236-45255 | Msa1439740:CDS | 30.0% |
| GGAATTCATGGAATTCATAA+TGG | + | tig0028837:45248-45267 | Msa1439740:CDS | 30.0% | |
| TGAAAGTTAAAACGAAGTGT+TGG | - | tig0028837:45314-45333 | None:intergenic | 30.0% | |
| !! | TTGACTTGGATTGAAACTTT+AGG | + | tig0028837:45339-45358 | Msa1439740:intron | 30.0% |
| TATACATGATATGCATGGAT+AGG | + | tig0028837:45374-45393 | Msa1439740:intron | 30.0% | |
| ATACATGATATGCATGGATA+GGG | + | tig0028837:45375-45394 | Msa1439740:intron | 30.0% | |
| ATTTAATCTAGCTATTGGGA+TGG | + | tig0028837:45416-45435 | Msa1439740:intron | 30.0% | |
| ! | GATTGGTTATTAAGGCTAAT+GGG | + | tig0028837:45532-45551 | Msa1439740:CDS | 30.0% |
| ATCAAACATTTACCAAAAGC+AGG | - | tig0028837:45682-45701 | None:intergenic | 30.0% | |
| ! | TAAATCCAATTTTGTTCCTG+TGG | - | tig0028837:45784-45803 | None:intergenic | 30.0% |
| ! | TAAAATTAAGTGCCGTGATA+TGG | + | tig0028837:45835-45854 | Msa1439740:intron | 30.0% |
| AACATTTATCTGGGTAAATG+AGG | + | tig0028837:46287-46306 | Msa1439740:intron | 30.0% | |
| AAGACATACTTGTGGATATT+AGG | + | tig0028837:46318-46337 | Msa1439740:intron | 30.0% | |
| !!! | TTGTAGACAAAGGTTTTGTT+AGG | - | tig0028837:46370-46389 | None:intergenic | 30.0% |
| ! | ATAAACCTTGTTGTAGACAA+AGG | - | tig0028837:46380-46399 | None:intergenic | 30.0% |
| AACAAGGTTTATCTATCTCA+GGG | + | tig0028837:46388-46407 | Msa1439740:intron | 30.0% | |
| AAGTTCAGAAAAATTGAGAG+AGG | - | tig0028837:46524-46543 | None:intergenic | 30.0% | |
| ! | ATTTTTCTGAACTTTCTCTC+TGG | + | tig0028837:46530-46549 | Msa1439740:intron | 30.0% |
| AACATCAGTTTCTAACAGTA+GGG | + | tig0028837:46568-46587 | Msa1439740:intron | 30.0% | |
| ATGGATCTGTATATTAAGCT+TGG | + | tig0028837:46661-46680 | Msa1439740:intron | 30.0% | |
| TGGATCTGTATATTAAGCTT+GGG | + | tig0028837:46662-46681 | Msa1439740:intron | 30.0% | |
| GGCATATTTCATTACGAATA+TGG | + | tig0028837:46736-46755 | Msa1439740:intron | 30.0% | |
| ATGAACTCCCAAAACTTTAT+AGG | - | tig0028837:46764-46783 | None:intergenic | 30.0% | |
| ! | TTCATGTCTCTAATTTTGGA+AGG | + | tig0028837:46779-46798 | Msa1439740:CDS | 30.0% |
| ! | CTTTTGTACTGTTAACCATT+AGG | + | tig0028837:46824-46843 | Msa1439740:intron | 30.0% |
| ACTTTAATTCACGAGAGATT+TGG | - | tig0028837:46917-46936 | None:intergenic | 30.0% | |
| !!! | ATTTTGACTTGAAACACTTC+AGG | + | tig0028837:46945-46964 | Msa1439740:intron | 30.0% |
| !! | TTTTGACTATAAATAGGGCA+GGG | - | tig0028837:47127-47146 | None:intergenic | 30.0% |
| TATTTGCGCCTTCAATATTA+TGG | - | tig0028837:47214-47233 | None:intergenic | 30.0% | |
| !! | CGCAAATATAAGTTGGATTT+TGG | + | tig0028837:47226-47245 | Msa1439740:intron | 30.0% |
| !! | ATAAGTTGGATTTTGGCATT+AGG | + | tig0028837:47233-47252 | Msa1439740:intron | 30.0% |
| GAGCCTATTTATAGCTTATT+TGG | + | tig0028837:47347-47366 | Msa1439740:intron | 30.0% | |
| ATGTAATCAAAGAGTGAATG+TGG | - | tig0028837:47487-47506 | None:intergenic | 30.0% | |
| GTACATAACTCAGATAACAA+AGG | - | tig0028837:47807-47826 | None:intergenic | 30.0% | |
| !! | ATGTGAGTCTTATTCTTGAA+GGG | - | tig0028837:47942-47961 | None:intergenic | 30.0% |
| ! | TTTTGAGCAATCAAAAGATC+TGG | - | tig0028837:47971-47990 | None:intergenic | 30.0% |
| !! | TTTTGATTGCTCAAAAGCAA+AGG | + | tig0028837:47975-47994 | Msa1439740:CDS | 30.0% |
| TGTCTTAACTCCAATATTCA+TGG | + | tig0028837:48066-48085 | Msa1439740:intron | 30.0% | |
| !!! | GGATTTTTTTTCAAAGCACA+TGG | - | tig0028837:48159-48178 | None:intergenic | 30.0% |
| GAAAAAAAATCCTGAGAAGT+TGG | + | tig0028837:48167-48186 | Msa1439740:intron | 30.0% | |
| ! | CACAGTATCAGTAATTTTGT+AGG | - | tig0028837:48205-48224 | None:intergenic | 30.0% |
| CTACAAAATTACTGATACTG+TGG | + | tig0028837:48203-48222 | Msa1439740:intron | 30.0% | |
| TGTTAATCCTACTTCTTGTA+CGG | + | tig0028837:48331-48350 | Msa1439740:intron | 30.0% | |
| CAACTTAAGTCTAAAAGAGA+AGG | + | tig0028837:48449-48468 | Msa1439740:CDS | 30.0% | |
| CACAAACAAAGAAGTTAGAT+GGG | - | tig0028837:48532-48551 | None:intergenic | 30.0% | |
| TCACAAACAAAGAAGTTAGA+TGG | - | tig0028837:48533-48552 | None:intergenic | 30.0% | |
| ! | ACTTCTTTGTTTGTGATATC+TGG | + | tig0028837:48537-48556 | Msa1439740:intron | 30.0% |
| TCTAAACGCCATTTAAAAGT+AGG | + | tig0028837:48616-48635 | Msa1439740:intron | 30.0% | |
| !! | TGAATGTGCCTACTTTTAAA+TGG | - | tig0028837:48627-48646 | None:intergenic | 30.0% |
| GGATATGACATGAACAAATT+GGG | - | tig0028837:48753-48772 | None:intergenic | 30.0% | |
| AGGATATGACATGAACAAAT+TGG | - | tig0028837:48754-48773 | None:intergenic | 30.0% | |
| TAAAAAATTAGGAATGGTGG+TGG | - | tig0028837:48923-48942 | None:intergenic | 30.0% | |
| CTTCTATTATACTCATCGAT+CGG | + | tig0028837:49201-49220 | Msa1439740:CDS | 30.0% | |
| TACAGTGTTAATTGACAATC+TGG | - | tig0028837:49316-49335 | None:intergenic | 30.0% | |
| ATTGTATGCTTGTTCAGATT+GGG | + | tig0028837:49558-49577 | Msa1439740:intron | 30.0% | |
| ! | TAATTGGGTGATGTTTTTCA+AGG | + | tig0028837:49710-49729 | Msa1439740:CDS | 30.0% |
| AAACAACCTATTGATCACAA+AGG | - | tig0028837:49818-49837 | None:intergenic | 30.0% | |
| CTACGTTTATGAAAAAAAGG+AGG | + | tig0028837:50016-50035 | Msa1439740:CDS | 30.0% | |
| !! | CTTTGAAGTAACAAACTTCT+TGG | - | tig0028837:50105-50124 | None:intergenic | 30.0% |
| !!! | TTGATGGTTTTTTCTTCTTC+TGG | + | tig0028837:50130-50149 | Msa1439740:exon | 30.0% |
| ! | CTAGATTTTTCTTAGATGAG+CGG | + | tig0028837:50159-50178 | Msa1439740:three_prime_UTR | 30.0% |
| ! | TAGATTTTTCTTAGATGAGC+GGG | + | tig0028837:50160-50179 | Msa1439740:three_prime_UTR | 30.0% |
| !!! | TAGAGGTATTTTTTTTGCAG+TGG | + | tig0028837:50302-50321 | Msa1439740:three_prime_UTR | 30.0% |
| AAAGAGAGCTTAAAATGTTG+TGG | + | tig0028837:50353-50372 | Msa1439740:three_prime_UTR | 30.0% | |
| AAGAGAGCTTAAAATGTTGT+GGG | + | tig0028837:50354-50373 | Msa1439740:three_prime_UTR | 30.0% | |
| ! | ATGTGATTGGTGATTATCTT+TGG | + | tig0028837:50478-50497 | Msa1439740:three_prime_UTR | 30.0% |
| ATAATCAAATGCAGTCTGGA+AGG | - | tig0028837:44670-44689 | None:intergenic | 35.0% | |
| TTCCAGACTGCATTTGATTA+TGG | + | tig0028837:44669-44688 | Msa1439740:exon | 35.0% | |
| !! | GGTTAACCTTTTAAGAGTTG+AGG | - | tig0028837:44910-44929 | None:intergenic | 35.0% |
| TTAATCTCTGCAGCATTTGA+AGG | + | tig0028837:44985-45004 | Msa1439740:intron | 35.0% | |
| !! | AGTTGAGGTTGTTTTCCATA+TGG | + | tig0028837:45008-45027 | Msa1439740:CDS | 35.0% |
| !! | AAACGAAGTGTTGGTAAAGT+AGG | - | tig0028837:45305-45324 | None:intergenic | 35.0% |
| CTGCATATACATGATATGCA+TGG | + | tig0028837:45369-45388 | Msa1439740:intron | 35.0% | |
| TACATGATATGCATGGATAG+GGG | + | tig0028837:45376-45395 | Msa1439740:intron | 35.0% | |
| ATCATTATGCTGGAAACAGT+AGG | - | tig0028837:45481-45500 | None:intergenic | 35.0% | |
| CTGAGTAATGATCATTATGC+TGG | - | tig0028837:45491-45510 | None:intergenic | 35.0% | |
| !! | GGATTGGTTATTAAGGCTAA+TGG | + | tig0028837:45531-45550 | Msa1439740:CDS | 35.0% |
| ! | ATGTTGTTCTTACCTGCTTT+TGG | + | tig0028837:45667-45686 | Msa1439740:intron | 35.0% |
| ! | TTGAATCTGAAGTTTACCAC+AGG | + | tig0028837:45765-45784 | Msa1439740:intron | 35.0% |
| GTTTACCACAGGAACAAAAT+TGG | + | tig0028837:45776-45795 | Msa1439740:intron | 35.0% | |
| ! | CAACCAGTTTTTCCATATCA+CGG | - | tig0028837:45850-45869 | None:intergenic | 35.0% |
| GTGATATGGAAAAACTGGTT+GGG | + | tig0028837:45849-45868 | Msa1439740:intron | 35.0% | |
| TGATATGGAAAAACTGGTTG+GGG | + | tig0028837:45850-45869 | Msa1439740:intron | 35.0% | |
| AAGTAGTCACACATGCATAT+TGG | - | tig0028837:45877-45896 | None:intergenic | 35.0% | |
| TTCTCTTACCAGTTCATTGT+TGG | + | tig0028837:45947-45966 | Msa1439740:intron | 35.0% | |
| !! | AGGCATAAGAGAAGTTTTGA+TGG | + | tig0028837:46142-46161 | Msa1439740:intron | 35.0% |
| AAGTCTGAAAGACATACTTG+TGG | + | tig0028837:46310-46329 | Msa1439740:intron | 35.0% | |
| TTAGGAATAGAAAAGTCCAG+TGG | + | tig0028837:46336-46355 | Msa1439740:intron | 35.0% | |
| TAGGAATAGAAAAGTCCAGT+GGG | + | tig0028837:46337-46356 | Msa1439740:intron | 35.0% | |
| CAAAACCTTTGTCTACAACA+AGG | + | tig0028837:46372-46391 | Msa1439740:intron | 35.0% | |
| CAACAAGGTTTATCTATCTC+AGG | + | tig0028837:46387-46406 | Msa1439740:intron | 35.0% | |
| GAACATCAGTTTCTAACAGT+AGG | + | tig0028837:46567-46586 | Msa1439740:intron | 35.0% | |
| TTGTGGAGAAAAACGAAAGA+TGG | + | tig0028837:46642-46661 | Msa1439740:intron | 35.0% | |
| ! | GGAGTTCATGTCTCTAATTT+TGG | + | tig0028837:46775-46794 | Msa1439740:CDS | 35.0% |
| !! | TCTCTAATTTTGGAAGGTCT+TGG | + | tig0028837:46785-46804 | Msa1439740:CDS | 35.0% |
| TAAGAGCAAGAAAGACCTAA+TGG | - | tig0028837:46842-46861 | None:intergenic | 35.0% | |
| TTCACTCTTGATGCAAAACA+AGG | + | tig0028837:46889-46908 | Msa1439740:intron | 35.0% | |
| TTTGACTATAAATAGGGCAG+GGG | - | tig0028837:47126-47145 | None:intergenic | 35.0% | |
| !! | CTTTTGACTATAAATAGGGC+AGG | - | tig0028837:47128-47147 | None:intergenic | 35.0% |
| TATAGTCAAAAGAGACATGC+TGG | + | tig0028837:47136-47155 | Msa1439740:intron | 35.0% | |
| ! | TTGAAGGCGCAAATATAAGT+TGG | + | tig0028837:47219-47238 | Msa1439740:intron | 35.0% |
| !! | TGGATTTTGGCATTAGGATT+AGG | + | tig0028837:47239-47258 | Msa1439740:intron | 35.0% |
| AGTTTCTGTCAAATCATCTC+TGG | + | tig0028837:47266-47285 | Msa1439740:intron | 35.0% | |
| GTTTCTGTCAAATCATCTCT+GGG | + | tig0028837:47267-47286 | Msa1439740:intron | 35.0% | |
| !!! | GGGTTAAGAATTTTTTGTCC+TGG | + | tig0028837:47287-47306 | Msa1439740:intron | 35.0% |
| TTAGGTTACGAAACTTGATC+AGG | - | tig0028837:47604-47623 | None:intergenic | 35.0% | |
| TTGGCATGATAACAAAGACA+GGG | - | tig0028837:47852-47871 | None:intergenic | 35.0% | |
| ATTGGCATGATAACAAAGAC+AGG | - | tig0028837:47853-47872 | None:intergenic | 35.0% | |
| TATCATGCCAATTGCACATT+TGG | + | tig0028837:47861-47880 | Msa1439740:CDS | 35.0% | |
| ! | ATTTGGTGGAGTGGATATAT+AGG | + | tig0028837:47878-47897 | Msa1439740:CDS | 35.0% |
| !! | TGTGAGTCTTATTCTTGAAG+GGG | - | tig0028837:47941-47960 | None:intergenic | 35.0% |
| !! | GATGTGAGTCTTATTCTTGA+AGG | - | tig0028837:47943-47962 | None:intergenic | 35.0% |
| !! | TTTTTCAAAGCACATGGTTC+AGG | - | tig0028837:48153-48172 | None:intergenic | 35.0% |
| TTAGAATTAGCCAACTTCTC+AGG | - | tig0028837:48180-48199 | None:intergenic | 35.0% | |
| GTTAATCCTACTTCTTGTAC+GGG | + | tig0028837:48332-48351 | Msa1439740:intron | 35.0% | |
| TTAATCCTACTTCTTGTACG+GGG | + | tig0028837:48333-48352 | Msa1439740:intron | 35.0% | |
| ! | ACTGTAATTTTTCTTGCAGG+AGG | + | tig0028837:48379-48398 | Msa1439740:intron | 35.0% |
| ! | CTGTAATTTTTCTTGCAGGA+GGG | + | tig0028837:48380-48399 | Msa1439740:intron | 35.0% |
| !! | AGATATACAGAAGCTTTGGA+GGG | - | tig0028837:48476-48495 | None:intergenic | 35.0% |
| ! | AAGATATACAGAAGCTTTGG+AGG | - | tig0028837:48477-48496 | None:intergenic | 35.0% |
| TCCAAAGCTTCTGTATATCT+TGG | + | tig0028837:48476-48495 | Msa1439740:CDS | 35.0% | |
| TCCAAGATATACAGAAGCTT+TGG | - | tig0028837:48480-48499 | None:intergenic | 35.0% | |
| CACATTCACATAATTGTAGC+AGG | + | tig0028837:48639-48658 | Msa1439740:intron | 35.0% | |
| ATGAGATATGTGGAGTAGAA+AGG | - | tig0028837:48774-48793 | None:intergenic | 35.0% | |
| TCGTATCAAGATGAGATATG+TGG | - | tig0028837:48784-48803 | None:intergenic | 35.0% | |
| TAAAGTTCAAATTTCGGAGC+TGG | + | tig0028837:48882-48901 | Msa1439740:intron | 35.0% | |
| CTTTGTAAGAGCAGTAATGA+AGG | - | tig0028837:49181-49200 | None:intergenic | 35.0% | |
| ! | TCGATCGGTTTATTCATTCA+TGG | + | tig0028837:49216-49235 | Msa1439740:CDS | 35.0% |
| ACCAGATTGTCAATTAACAC+TGG | + | tig0028837:49284-49303 | Msa1439740:intron | 35.0% | |
| TCCAGTGTTAATTGACAATC+TGG | - | tig0028837:49288-49307 | None:intergenic | 35.0% | |
| !! | GTCGTTAACTTGTCTAATGA+TGG | + | tig0028837:49340-49359 | Msa1439740:intron | 35.0% |
| TGTTGTGTAGTTCCTTATTC+AGG | + | tig0028837:49442-49461 | Msa1439740:intron | 35.0% | |
| CATCATTGTAGTTCTTGAGA+TGG | - | tig0028837:49479-49498 | None:intergenic | 35.0% | |
| TACAATGATGATCCAGCTAT+TGG | + | tig0028837:49489-49508 | Msa1439740:intron | 35.0% | |
| CATTGCACTTTCTAATGTGA+AGG | + | tig0028837:49515-49534 | Msa1439740:intron | 35.0% | |
| CATTGTATGCTTGTTCAGAT+TGG | + | tig0028837:49557-49576 | Msa1439740:intron | 35.0% | |
| TTGTATGCTTGTTCAGATTG+GGG | + | tig0028837:49559-49578 | Msa1439740:intron | 35.0% | |
| GATAAGTGAAACCATGATGT+GGG | - | tig0028837:49603-49622 | None:intergenic | 35.0% | |
| TGATAAGTGAAACCATGATG+TGG | - | tig0028837:49604-49623 | None:intergenic | 35.0% | |
| CATTAAAATCCCTTGCAGAA+GGG | + | tig0028837:49685-49704 | Msa1439740:CDS | 35.0% | |
| ! | TTTTATATATCCTGAGGTCG+TGG | + | tig0028837:49768-49787 | Msa1439740:intron | 35.0% |
| !! | TTGAATCCATTGATAGTGCT+TGG | + | tig0028837:49932-49951 | Msa1439740:intron | 35.0% |
| ATTCATCCAAGCACTATCAA+TGG | - | tig0028837:49941-49960 | None:intergenic | 35.0% | |
| GTAGAAAGCTGTAAATGCTA+AGG | - | tig0028837:50000-50019 | None:intergenic | 35.0% | |
| AAAAAGGAGGAAGACATTGA+CGG | + | tig0028837:50029-50048 | Msa1439740:CDS | 35.0% | |
| !!! | TGGTTTTTTCTTCTTCTGGT+TGG | + | tig0028837:50134-50153 | Msa1439740:three_prime_UTR | 35.0% |
| CATCTTCATTTAATCCACGT+TGG | + | tig0028837:50189-50208 | Msa1439740:three_prime_UTR | 35.0% | |
| CACTCCTATCGGAATTTAAT+CGG | + | tig0028837:50433-50452 | Msa1439740:three_prime_UTR | 35.0% | |
| CAAACCGATTAAATTCCGAT+AGG | - | tig0028837:50440-50459 | None:intergenic | 35.0% | |
| ACCAATCACATCCCATATAA+GGG | - | tig0028837:50469-50488 | None:intergenic | 35.0% | |
| ! | TGATTGGTGATTATCTTTGG+CGG | + | tig0028837:50481-50500 | Msa1439740:three_prime_UTR | 35.0% |
| TTGAGCAAACATGACTCAAA+GGG | - | tig0028837:50507-50526 | None:intergenic | 35.0% | |
| TTTGAGCAAACATGACTCAA+AGG | - | tig0028837:50508-50527 | None:intergenic | 35.0% | |
| TCAAAACCTGTAACATGACA+TGG | + | tig0028837:50610-50629 | Msa1439740:three_prime_UTR | 35.0% | |
| CAAAACCTGTAACATGACAT+GGG | + | tig0028837:50611-50630 | Msa1439740:three_prime_UTR | 35.0% | |
| AGTTATGGATCACAGAGTCA+CGG | - | tig0028837:44645-44664 | None:intergenic | 40.0% | |
| CAGACTGCATTTGATTATGG+CGG | + | tig0028837:44672-44691 | Msa1439740:exon | 40.0% | |
| !! | TTCAATGGTGGATCCCAAAT+CGG | - | tig0028837:44800-44819 | None:intergenic | 40.0% |
| AGAAGACCTAATTGCTCAGA+GGG | - | tig0028837:44829-44848 | None:intergenic | 40.0% | |
| TCTGAGCAATTAGGTCTTCT+CGG | + | tig0028837:44829-44848 | Msa1439740:CDS | 40.0% | |
| ! | AAGAATTTGGAGCAGCCATA+TGG | - | tig0028837:45026-45045 | None:intergenic | 40.0% |
| CATCATTCCGTCAATGTTGA+AGG | + | tig0028837:45066-45085 | Msa1439740:CDS | 40.0% | |
| TGCTTCACCTTCAACATTGA+CGG | - | tig0028837:45076-45095 | None:intergenic | 40.0% | |
| !!! | TCTCCCAGTGTTGTTTTTGA+TGG | + | tig0028837:45227-45246 | Msa1439740:CDS | 40.0% |
| CTAGCTATTGGGATGGAAAT+AGG | + | tig0028837:45423-45442 | Msa1439740:intron | 40.0% | |
| ATTAAGGCTAATGGGACTAG+TGG | + | tig0028837:45540-45559 | Msa1439740:CDS | 40.0% | |
| ! | TAAACTGTTGGTGCCTTCAT+TGG | + | tig0028837:45611-45630 | Msa1439740:CDS | 40.0% |
| TTTGCAGCATCAACCAATGA+AGG | - | tig0028837:45627-45646 | None:intergenic | 40.0% | |
| ! | TTCATTGGTTGATGCTGCAA+AGG | + | tig0028837:45626-45645 | Msa1439740:CDS | 40.0% |
| GGTAAGAACAACATCTACCT+TGG | - | tig0028837:45661-45680 | None:intergenic | 40.0% | |
| GATGAAATTGCCGTGAGTAT+TGG | - | tig0028837:45730-45749 | None:intergenic | 40.0% | |
| CGTGATATGGAAAAACTGGT+TGG | + | tig0028837:45848-45867 | Msa1439740:intron | 40.0% | |
| ! | TACCAGTTCATTGTTGGTGA+TGG | + | tig0028837:45953-45972 | Msa1439740:intron | 40.0% |
| !! | TCCTGCAGCTTTTTCTGAAA+CGG | - | tig0028837:46062-46081 | None:intergenic | 40.0% |
| ATTGTCTGTTCTTTCTTCCC+TGG | + | tig0028837:46205-46224 | Msa1439740:intron | 40.0% | |
| ! | TGTTAAAAGTGTGCACACCA+GGG | - | tig0028837:46225-46244 | None:intergenic | 40.0% |
| ! | TTGTTAAAAGTGTGCACACC+AGG | - | tig0028837:46226-46245 | None:intergenic | 40.0% |
| ! | TGGTGTGCACACTTTTAACA+AGG | + | tig0028837:46225-46244 | Msa1439740:intron | 40.0% |
| TCAATCACCCTCAGTTTGAA+CGG | + | tig0028837:46445-46464 | Msa1439740:intron | 40.0% | |
| TGGAAGGTCTTGGATATCAA+AGG | + | tig0028837:46795-46814 | Msa1439740:CDS | 40.0% | |
| GTAACCTAATGCACCCTTAA+CGG | + | tig0028837:47615-47634 | Msa1439740:intron | 40.0% | |
| ! | AAAACCGTTAAGGGTGCATT+AGG | - | tig0028837:47622-47641 | None:intergenic | 40.0% |
| ! | TTTTATGCCCACGAGAATAC+TGG | + | tig0028837:47644-47663 | Msa1439740:intron | 40.0% |
| AGACAAACCAGTATTCTCGT+GGG | - | tig0028837:47654-47673 | None:intergenic | 40.0% | |
| TAGACAAACCAGTATTCTCG+TGG | - | tig0028837:47655-47674 | None:intergenic | 40.0% | |
| ATCTGAGTTATGTACCTTGC+AGG | + | tig0028837:47812-47831 | Msa1439740:intron | 40.0% | |
| AAGACAGGGATCTTTATGCT+TGG | - | tig0028837:47838-47857 | None:intergenic | 40.0% | |
| ! | AGAACCTGTAGAGGTATGAT+GGG | - | tig0028837:48018-48037 | None:intergenic | 40.0% |
| CAGTTCAGAGCCATGAATAT+TGG | - | tig0028837:48079-48098 | None:intergenic | 40.0% | |
| GGATGATGTTTCTTGCTCAA+AGG | + | tig0028837:48282-48301 | Msa1439740:intron | 40.0% | |
| ! | GGGACTGTAATTTTTCTTGC+AGG | + | tig0028837:48376-48395 | Msa1439740:intron | 40.0% |
| GCTTCTGTATATCTTGGAAG+TGG | + | tig0028837:48482-48501 | Msa1439740:CDS | 40.0% | |
| GTATATCTTGGAAGTGGAAG+AGG | + | tig0028837:48488-48507 | Msa1439740:CDS | 40.0% | |
| ! | CAGTGTGCTTACATTTTTGC+AGG | - | tig0028837:49249-49268 | None:intergenic | 40.0% |
| TTGAGAAAATGCCCACATCA+TGG | + | tig0028837:49589-49608 | Msa1439740:CDS | 40.0% | |
| CACAGCAAAATTCCAAGATG+AGG | - | tig0028837:49661-49680 | None:intergenic | 40.0% | |
| GCATTAAAATCCCTTGCAGA+AGG | + | tig0028837:49684-49703 | Msa1439740:CDS | 40.0% | |
| CCAATTATTCCCTTCTGCAA+GGG | - | tig0028837:49697-49716 | None:intergenic | 40.0% | |
| CCTTGCAGAAGGGAATAATT+GGG | + | tig0028837:49695-49714 | Msa1439740:CDS | 40.0% | |
| CTATTGATCACAAAGGAGAG+AGG | - | tig0028837:49811-49830 | None:intergenic | 40.0% | |
| CTCTCTCCTTTGTGATCAAT+AGG | + | tig0028837:49809-49828 | Msa1439740:intron | 40.0% | |
| !!! | TTTTGTTGACTCTGAAGCAG+TGG | + | tig0028837:50329-50348 | Msa1439740:three_prime_UTR | 40.0% |
| AGAGCTTAAAATGTTGTGGG+TGG | + | tig0028837:50357-50376 | Msa1439740:three_prime_UTR | 40.0% | |
| ! | TGGAGGTTGATTGATAAACC+TGG | + | tig0028837:50377-50396 | Msa1439740:three_prime_UTR | 40.0% |
| ! | GGAGGTTGATTGATAAACCT+GGG | + | tig0028837:50378-50397 | Msa1439740:three_prime_UTR | 40.0% |
| ACCTGGGAAGCTATTTAGAT+TGG | + | tig0028837:50394-50413 | Msa1439740:three_prime_UTR | 40.0% | |
| CCTGGGAAGCTATTTAGATT+GGG | + | tig0028837:50395-50414 | Msa1439740:three_prime_UTR | 40.0% | |
| CACCAATCACATCCCATATA+AGG | - | tig0028837:50470-50489 | None:intergenic | 40.0% | |
| ! | TTTTGATGCATCCGACTCAA+AGG | - | tig0028837:50596-50615 | None:intergenic | 40.0% |
| TATGACCCATGTCATGTTAC+AGG | - | tig0028837:50619-50638 | None:intergenic | 40.0% | |
| GGACACACACGAAAGAGTAA+GGG | - | tig0028837:44474-44493 | None:intergenic | 45.0% | |
| GACGGTTCCATCACCATTTA+CGG | + | tig0028837:44496-44515 | Msa1439740:five_prime_UTR | 45.0% | |
| AGAGATATCGCAGCCGTAAA+TGG | - | tig0028837:44512-44531 | None:intergenic | 45.0% | |
| GCGATATCTCTCCTCACAAA+AGG | + | tig0028837:44521-44540 | Msa1439740:five_prime_UTR | 45.0% | |
| AAAGTAGAGAAGGTAGGACG+TGG | - | tig0028837:44615-44634 | None:intergenic | 45.0% | |
| CGTCCTACCTTCTCTACTTT+CGG | + | tig0028837:44615-44634 | Msa1439740:intron | 45.0% | |
| GTCCTACCTTCTCTACTTTC+GGG | + | tig0028837:44616-44635 | Msa1439740:intron | 45.0% | |
| ! | GCAGTCTGGAAGGTTAGTTA+TGG | - | tig0028837:44660-44679 | None:intergenic | 45.0% |
| CGCCATAATCAAATGCAGTC+TGG | - | tig0028837:44674-44693 | None:intergenic | 45.0% | |
| ACTGCATTTGATTATGGCGG+CGG | + | tig0028837:44675-44694 | Msa1439740:exon | 45.0% | |
| GGACACAGTAGGTGTTCAAT+CGG | - | tig0028837:44771-44790 | None:intergenic | 45.0% | |
| ! | AGAGGGTTCAAGTTCAATGG+TGG | - | tig0028837:44812-44831 | None:intergenic | 45.0% |
| ! | CTCAGAGGGTTCAAGTTCAA+TGG | - | tig0028837:44815-44834 | None:intergenic | 45.0% |
| CTTGAACCCTCTGAGCAATT+AGG | + | tig0028837:44820-44839 | Msa1439740:CDS | 45.0% | |
| GAGAAGACCTAATTGCTCAG+AGG | - | tig0028837:44830-44849 | None:intergenic | 45.0% | |
| !! | AGGTTTGTTGCGAAGATCGA+CGG | - | tig0028837:44890-44909 | None:intergenic | 45.0% |
| TGCAGCATTTGAAGGAGTTG+AGG | + | tig0028837:44993-45012 | Msa1439740:intron | 45.0% | |
| CATTGACGGAATGATGAAGC+TGG | - | tig0028837:45062-45081 | None:intergenic | 45.0% | |
| ATCGTTGCCTTATCCACCTT+CGG | + | tig0028837:45277-45296 | Msa1439740:CDS | 45.0% | |
| !! | GTTGGTAAAGTAGGTACCGA+AGG | - | tig0028837:45296-45315 | None:intergenic | 45.0% |
| TTACTCAGCAACTAAAGCCG+AGG | + | tig0028837:45503-45522 | Msa1439740:CDS | 45.0% | |
| TACTCAGCAACTAAAGCCGA+GGG | + | tig0028837:45504-45523 | Msa1439740:CDS | 45.0% | |
| AATAACCAATCCCTCACCCT+CGG | - | tig0028837:45523-45542 | None:intergenic | 45.0% | |
| !! | GGGTGAGGGATTGGTTATTA+AGG | + | tig0028837:45524-45543 | Msa1439740:CDS | 45.0% |
| ! | ATACGCCCTAGCAGCATTTT+TGG | + | tig0028837:45579-45598 | Msa1439740:CDS | 45.0% |
| CAGGTCCAAAAATGCTGCTA+GGG | - | tig0028837:45587-45606 | None:intergenic | 45.0% | |
| TGGACCTGGTGATAAACTGT+TGG | + | tig0028837:45599-45618 | Msa1439740:CDS | 45.0% | |
| GTGCCGTGATATGGAAAAAC+TGG | + | tig0028837:45844-45863 | Msa1439740:intron | 45.0% | |
| TGCCATCACCAACAATGAAC+TGG | - | tig0028837:45958-45977 | None:intergenic | 45.0% | |
| AGCTCGATCAGCACATATGT+GGG | - | tig0028837:46023-46042 | None:intergenic | 45.0% | |
| ACCGTTTCAGAAAAAGCTGC+AGG | + | tig0028837:46058-46077 | Msa1439740:CDS | 45.0% | |
| TTCAGAAAAAGCTGCAGGAG+AGG | + | tig0028837:46063-46082 | Msa1439740:CDS | 45.0% | |
| TCTATCTCAGGGACAAACTC+AGG | + | tig0028837:46399-46418 | Msa1439740:intron | 45.0% | |
| CTATCTCAGGGACAAACTCA+GGG | + | tig0028837:46400-46419 | Msa1439740:intron | 45.0% | |
| CAATCACCCTCAGTTTGAAC+GGG | + | tig0028837:46446-46465 | Msa1439740:intron | 45.0% | |
| AATCACCCTCAGTTTGAACG+GGG | + | tig0028837:46447-46466 | Msa1439740:intron | 45.0% | |
| ATCTTTATGCTTGGCCTGCA+AGG | - | tig0028837:47829-47848 | None:intergenic | 45.0% | |
| CATGCCAATTGCACATTTGG+TGG | + | tig0028837:47864-47883 | Msa1439740:CDS | 45.0% | |
| CACTCCACCAAATGTGCAAT+TGG | - | tig0028837:47871-47890 | None:intergenic | 45.0% | |
| ! | CAATTGCACATTTGGTGGAG+TGG | + | tig0028837:47869-47888 | Msa1439740:CDS | 45.0% |
| GAGTGGATATATAGGCTGCT+TGG | + | tig0028837:47886-47905 | Msa1439740:CDS | 45.0% | |
| ! | GAGGCACCTTCATTCCATAT+GGG | - | tig0028837:47912-47931 | None:intergenic | 45.0% |
| ! | TGAGGCACCTTCATTCCATA+TGG | - | tig0028837:47913-47932 | None:intergenic | 45.0% |
| !! | GTATGATGGGTGCATAGTCA+AGG | - | tig0028837:48005-48024 | None:intergenic | 45.0% |
| ! | CAGAACCTGTAGAGGTATGA+TGG | - | tig0028837:48019-48038 | None:intergenic | 45.0% |
| AAACGTCACAGAACCTGTAG+AGG | - | tig0028837:48027-48046 | None:intergenic | 45.0% | |
| !! | TTTTCTTGCAGGAGGGCATA+CGG | + | tig0028837:48387-48406 | Msa1439740:intron | 45.0% |
| ! | TGATTTTCGGCCCTCAAATG+TGG | - | tig0028837:48431-48450 | None:intergenic | 45.0% |
| GCAGGAAGTTGCAGTAGTTT+AGG | + | tig0028837:48725-48744 | Msa1439740:intron | 45.0% | |
| TCAGTGTAACCTGCTAATGC+TGG | + | tig0028837:48998-49017 | Msa1439740:intron | 45.0% | |
| CAGTGTAACCTGCTAATGCT+GGG | + | tig0028837:48999-49018 | Msa1439740:intron | 45.0% | |
| ATACAACTCCCAGCATTAGC+AGG | - | tig0028837:49010-49029 | None:intergenic | 45.0% | |
| AGTGCAATGTGTCCAATAGC+TGG | - | tig0028837:49504-49523 | None:intergenic | 45.0% | |
| CTTTCTCAGTTGCCTCATCT+TGG | + | tig0028837:49646-49665 | Msa1439740:CDS | 45.0% | |
| CCCTTGCAGAAGGGAATAAT+TGG | + | tig0028837:49694-49713 | Msa1439740:CDS | 45.0% | |
| CCCAATTATTCCCTTCTGCA+AGG | - | tig0028837:49698-49717 | None:intergenic | 45.0% | |
| AAGTTTGAATCCACGACCTC+AGG | - | tig0028837:49781-49800 | None:intergenic | 45.0% | |
| TCTTAAGTGAAAAGGCTCCC+AGG | - | tig0028837:49863-49882 | None:intergenic | 45.0% | |
| TCGCTTTCTCTCATGTTGTG+TGG | + | tig0028837:49904-49923 | Msa1439740:intron | 45.0% | |
| TGATACAGGGAATTCCAACG+TGG | - | tig0028837:50206-50225 | None:intergenic | 45.0% | |
| ! | TGTAAACTTGCTCGGAGTAG+AGG | + | tig0028837:50285-50304 | Msa1439740:three_prime_UTR | 45.0% |
| GCTTAAAATGTTGTGGGTGG+AGG | + | tig0028837:50360-50379 | Msa1439740:three_prime_UTR | 45.0% | |
| CCCAATCTAAATAGCTTCCC+AGG | - | tig0028837:50398-50417 | None:intergenic | 45.0% | |
| GTTTGCCGATGCCCTTATAT+GGG | + | tig0028837:50455-50474 | Msa1439740:three_prime_UTR | 45.0% | |
| ! | CACATCCCATATAAGGGCAT+CGG | - | tig0028837:50463-50482 | None:intergenic | 45.0% |
| GCCCTTATATGGGATGTGAT+TGG | + | tig0028837:50465-50484 | Msa1439740:three_prime_UTR | 45.0% | |
| CGGACACACACGAAAGAGTA+AGG | - | tig0028837:44475-44494 | None:intergenic | 50.0% | |
| !! | AAATGGTGATGGAACCGTCG+CGG | - | tig0028837:44495-44514 | None:intergenic | 50.0% |
| ATCGCAGCCGTAAATGGTGA+TGG | - | tig0028837:44506-44525 | None:intergenic | 50.0% | |
| !! | GGCTTGCAGTTGGTGAATCT+CGG | - | tig0028837:44579-44598 | None:intergenic | 50.0% |
| CACCCGAAAGTAGAGAAGGT+AGG | - | tig0028837:44621-44640 | None:intergenic | 50.0% | |
| CTCGGTCAAGCTTTACACTC+CGG | + | tig0028837:44847-44866 | Msa1439740:CDS | 50.0% | |
| GGAGACATATTGAGCACGAC+CGG | - | tig0028837:44869-44888 | None:intergenic | 50.0% | |
| !! | GTAGGTACCGAAGGTGGATA+AGG | - | tig0028837:45287-45306 | None:intergenic | 50.0% |
| !! | GGTAAAGTAGGTACCGAAGG+TGG | - | tig0028837:45293-45312 | None:intergenic | 50.0% |
| TAGGGCGTATGCAACATGTC+AGG | - | tig0028837:45569-45588 | None:intergenic | 50.0% | |
| CCAGGTCCAAAAATGCTGCT+AGG | - | tig0028837:45588-45607 | None:intergenic | 50.0% | |
| !! | CCTAGCAGCATTTTTGGACC+TGG | + | tig0028837:45585-45604 | Msa1439740:CDS | 50.0% |
| GGCACCAACAGTTTATCACC+AGG | - | tig0028837:45606-45625 | None:intergenic | 50.0% | |
| ! | TTGGTTGATGCTGCAAAGGC+AGG | + | tig0028837:45630-45649 | Msa1439740:CDS | 50.0% |
| ! | TGGTTGATGCTGCAAAGGCA+GGG | + | tig0028837:45631-45650 | Msa1439740:CDS | 50.0% |
| TGCAAAGGCAGGGAAATCCA+AGG | + | tig0028837:45641-45660 | Msa1439740:CDS | 50.0% | |
| GAGCTCGATCAGCACATATG+TGG | - | tig0028837:46024-46043 | None:intergenic | 50.0% | |
| ! | TGATCGAGCTCTAGCTTCAG+AGG | + | tig0028837:46033-46052 | Msa1439740:CDS | 50.0% |
| ! | GATCGAGCTCTAGCTTCAGA+GGG | + | tig0028837:46034-46053 | Msa1439740:CDS | 50.0% |
| TTGTTAGGATGTCAGCCCAC+TGG | - | tig0028837:46355-46374 | None:intergenic | 50.0% | |
| ! | GTGTCTGACAAGCTTGCTCT+TGG | + | tig0028837:46422-46441 | Msa1439740:intron | 50.0% |
| ATCACCCTCAGTTTGAACGG+GGG | + | tig0028837:46448-46467 | Msa1439740:intron | 50.0% | |
| ATAGCCCCCGTTCAAACTGA+GGG | - | tig0028837:46455-46474 | None:intergenic | 50.0% | |
| AATAGCCCCCGTTCAAACTG+AGG | - | tig0028837:46456-46475 | None:intergenic | 50.0% | |
| GCTGGCATGTGACTATACTG+AGG | + | tig0028837:47154-47173 | Msa1439740:intron | 50.0% | |
| TATAGGCTGCTTGGCCCATA+TGG | + | tig0028837:47895-47914 | Msa1439740:CDS | 50.0% | |
| GCTTGGCCCATATGGAATGA+AGG | + | tig0028837:47903-47922 | Msa1439740:CDS | 50.0% | |
| ATTCTTGAAGGGGTCAGCTG+AGG | - | tig0028837:47931-47950 | None:intergenic | 50.0% | |
| ! | TGATGGGTGCATAGTCAAGG+CGG | - | tig0028837:48002-48021 | None:intergenic | 50.0% |
| TGCACCCATCATACCTCTAC+AGG | + | tig0028837:48011-48030 | Msa1439740:CDS | 50.0% | |
| GAACACCCCGTACAAGAAGT+AGG | - | tig0028837:48341-48360 | None:intergenic | 50.0% | |
| ACGTGTCAGCAACTGCAATG+TGG | - | tig0028837:49074-49093 | None:intergenic | 50.0% | |
| CAGTTGCTGACACGTTGCTT+TGG | + | tig0028837:49079-49098 | Msa1439740:intron | 50.0% | |
| ! | TGCTGACACGTTGCTTTGGA+AGG | + | tig0028837:49083-49102 | Msa1439740:CDS | 50.0% |
| TCTGCTCGTTCTTAGCTTCC+TGG | + | tig0028837:49842-49861 | Msa1439740:CDS | 50.0% | |
| CTGCTCGTTCTTAGCTTCCT+GGG | + | tig0028837:49843-49862 | Msa1439740:CDS | 50.0% | |
| GGTTTGCCGATGCCCTTATA+TGG | + | tig0028837:50454-50473 | Msa1439740:three_prime_UTR | 50.0% | |
| TGGCAAAGGCTCCTTTGAGT+CGG | + | tig0028837:50582-50601 | Msa1439740:three_prime_UTR | 50.0% | |
| TCTTTCGTGTGTGTCCGCGA+CGG | + | tig0028837:44478-44497 | Msa1439740:five_prime_UTR | 55.0% | |
| ! | GACGACAGTCGCCTTTTGTG+AGG | - | tig0028837:44535-44554 | None:intergenic | 55.0% |
| AAAGGCGACTGTCGTCGCAA+CGG | + | tig0028837:44539-44558 | Msa1439740:five_prime_UTR | 55.0% | |
| !! | GCAGTTGGTGAATCTCGGTG+CGG | - | tig0028837:44574-44593 | None:intergenic | 55.0% |
| TCACCAACTGCAAGCCTCAG+CGG | + | tig0028837:44583-44602 | Msa1439740:five_prime_UTR | 55.0% | |
| CGGACACCCGAAAGTAGAGA+AGG | - | tig0028837:44625-44644 | None:intergenic | 55.0% | |
| GCATTTGATTATGGCGGCGG+CGG | + | tig0028837:44678-44697 | Msa1439740:exon | 55.0% | |
| GAAAGGTGGTGTGTGGTCAC+CGG | + | tig0028837:44703-44722 | Msa1439740:CDS | 55.0% | |
| !! | TGTGTCCGCATCGCCGATTT+GGG | + | tig0028837:44784-44803 | Msa1439740:CDS | 55.0% |
| TGGATCCCAAATCGGCGATG+CGG | - | tig0028837:44792-44811 | None:intergenic | 55.0% | |
| AGCAACTAAAGCCGAGGGTG+AGG | + | tig0028837:45509-45528 | Msa1439740:CDS | 55.0% | |
| GCAACTAAAGCCGAGGGTGA+GGG | + | tig0028837:45510-45529 | Msa1439740:CDS | 55.0% | |
| TAAAGCCGAGGGTGAGGGAT+TGG | + | tig0028837:45515-45534 | Msa1439740:CDS | 55.0% | |
| TTTGATTATGGCGGCGGCGG+AGG | + | tig0028837:44681-44700 | Msa1439740:exon | 60.0% | |
| AGCAGCAAAGCCTCGTCCTC+CGG | - | tig0028837:44725-44744 | None:intergenic | 60.0% | |
| ATCGGCGATGCGGACACAGT+AGG | - | tig0028837:44782-44801 | None:intergenic | 60.0% | |
| ! | CTGTGTCCGCATCGCCGATT+TGG | + | tig0028837:44783-44802 | Msa1439740:CDS | 60.0% |
| ! | TCTTGCAGGAGGGCATACGG+AGG | + | tig0028837:48390-48409 | Msa1439740:intron | 60.0% |
| TTATGGCGGCGGCGGAGGAA+AGG | + | tig0028837:44686-44705 | Msa1439740:exon | 65.0% | |
| GGCGGAGGAAAGGTGGTGTG+TGG | + | tig0028837:44696-44715 | Msa1439740:CDS | 65.0% | |
| AGGTGGTGTGTGGTCACCGG+AGG | + | tig0028837:44706-44725 | Msa1439740:CDS | 65.0% | |
| TGTGTGGTCACCGGAGGACG+AGG | + | tig0028837:44712-44731 | Msa1439740:CDS | 65.0% | |
| GCGCCGCTGAGGCTTGCAGT+TGG | - | tig0028837:44589-44608 | None:intergenic | 70.0% | |
| GGACGTGGATCGCGCCGCTG+AGG | - | tig0028837:44600-44619 | None:intergenic | 75.0% | |
| TGGCGGCGGCGGAGGAAAGG+TGG | + | tig0028837:44689-44708 | Msa1439740:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028837 | gene | 44422 | 50758 | 44422 | ID=Msa1439740;Name=Msa1439740 |
| tig0028837 | mRNA | 44422 | 50758 | 44422 | ID=Msa1439740-mRNA-1;Parent=Msa1439740;Name=Msa1439740-mRNA-1;_AED=0.07;_eAED=0.07;_QI=246|1|1|1|0.91|0.84|13|625|562 |
| tig0028837 | exon | 44422 | 44604 | 44422 | ID=Msa1439740-mRNA-1:exon:11901;Parent=Msa1439740-mRNA-1 |
| tig0028837 | exon | 44625 | 44922 | 44625 | ID=Msa1439740-mRNA-1:exon:11902;Parent=Msa1439740-mRNA-1 |
| tig0028837 | exon | 44998 | 45087 | 44998 | ID=Msa1439740-mRNA-1:exon:11903;Parent=Msa1439740-mRNA-1 |
| tig0028837 | exon | 45165 | 45298 | 45165 | ID=Msa1439740-mRNA-1:exon:11904;Parent=Msa1439740-mRNA-1 |
| tig0028837 | exon | 45492 | 45662 | 45492 | ID=Msa1439740-mRNA-1:exon:11905;Parent=Msa1439740-mRNA-1 |
| tig0028837 | exon | 45959 | 46084 | 45959 | ID=Msa1439740-mRNA-1:exon:11906;Parent=Msa1439740-mRNA-1 |
| tig0028837 | exon | 46737 | 46816 | 46737 | ID=Msa1439740-mRNA-1:exon:11907;Parent=Msa1439740-mRNA-1 |
| tig0028837 | exon | 47834 | 48032 | 47834 | ID=Msa1439740-mRNA-1:exon:11908;Parent=Msa1439740-mRNA-1 |
| tig0028837 | exon | 48398 | 48509 | 48398 | ID=Msa1439740-mRNA-1:exon:11909;Parent=Msa1439740-mRNA-1 |
| tig0028837 | exon | 49082 | 49256 | 49082 | ID=Msa1439740-mRNA-1:exon:11910;Parent=Msa1439740-mRNA-1 |
| tig0028837 | exon | 49575 | 49731 | 49575 | ID=Msa1439740-mRNA-1:exon:11911;Parent=Msa1439740-mRNA-1 |
| tig0028837 | exon | 49831 | 49897 | 49831 | ID=Msa1439740-mRNA-1:exon:11912;Parent=Msa1439740-mRNA-1 |
| tig0028837 | exon | 49991 | 50758 | 49991 | ID=Msa1439740-mRNA-1:exon:11913;Parent=Msa1439740-mRNA-1 |
| tig0028837 | five_prime_UTR | 44422 | 44604 | 44422 | ID=Msa1439740-mRNA-1:five_prime_utr;Parent=Msa1439740-mRNA-1 |
| tig0028837 | five_prime_UTR | 44625 | 44687 | 44625 | ID=Msa1439740-mRNA-1:five_prime_utr;Parent=Msa1439740-mRNA-1 |
| tig0028837 | CDS | 44688 | 44922 | 44688 | ID=Msa1439740-mRNA-1:cds;Parent=Msa1439740-mRNA-1 |
| tig0028837 | CDS | 44998 | 45087 | 44998 | ID=Msa1439740-mRNA-1:cds;Parent=Msa1439740-mRNA-1 |
| tig0028837 | CDS | 45165 | 45298 | 45165 | ID=Msa1439740-mRNA-1:cds;Parent=Msa1439740-mRNA-1 |
| tig0028837 | CDS | 45492 | 45662 | 45492 | ID=Msa1439740-mRNA-1:cds;Parent=Msa1439740-mRNA-1 |
| tig0028837 | CDS | 45959 | 46084 | 45959 | ID=Msa1439740-mRNA-1:cds;Parent=Msa1439740-mRNA-1 |
| tig0028837 | CDS | 46737 | 46816 | 46737 | ID=Msa1439740-mRNA-1:cds;Parent=Msa1439740-mRNA-1 |
| tig0028837 | CDS | 47834 | 48032 | 47834 | ID=Msa1439740-mRNA-1:cds;Parent=Msa1439740-mRNA-1 |
| tig0028837 | CDS | 48398 | 48509 | 48398 | ID=Msa1439740-mRNA-1:cds;Parent=Msa1439740-mRNA-1 |
| tig0028837 | CDS | 49082 | 49256 | 49082 | ID=Msa1439740-mRNA-1:cds;Parent=Msa1439740-mRNA-1 |
| tig0028837 | CDS | 49575 | 49731 | 49575 | ID=Msa1439740-mRNA-1:cds;Parent=Msa1439740-mRNA-1 |
| tig0028837 | CDS | 49831 | 49897 | 49831 | ID=Msa1439740-mRNA-1:cds;Parent=Msa1439740-mRNA-1 |
| tig0028837 | CDS | 49991 | 50133 | 49991 | ID=Msa1439740-mRNA-1:cds;Parent=Msa1439740-mRNA-1 |
| tig0028837 | three_prime_UTR | 50134 | 50758 | 50134 | ID=Msa1439740-mRNA-1:three_prime_utr;Parent=Msa1439740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
