Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386300 | XP_003603858.2 | 94.087 | 389 | 7 | 2 | 3 | 375 | 38 | 426 | 0.0 | 746 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386300 | sp|Q9SFX3|OST1A_ARATH | 67.095 | 389 | 111 | 3 | 3 | 375 | 36 | 423 | 0.0 | 522 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386300 | I3SBG9 | 94.087 | 389 | 7 | 2 | 3 | 375 | 38 | 426 | 0.0 | 746 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0183860 | Msa0386300 | 0.804348 | 2.255057e-49 | -8.615850e-47 |
| Msa0378410 | Msa0386300 | 0.803905 | 2.788680e-49 | -8.615850e-47 |
| Msa0386300 | Msa0433680 | 0.821967 | 3.046496e-53 | -8.615850e-47 |
| Msa0386300 | Msa0436100 | 0.818500 | 1.898067e-52 | -8.615850e-47 |
| Msa0386300 | Msa0477560 | 0.814813 | 1.272399e-51 | -8.615850e-47 |
| Msa0386300 | Msa0606120 | 0.829635 | 4.611355e-55 | -8.615850e-47 |
| Msa0386300 | Msa0659300 | 0.820895 | 5.385557e-53 | -8.615850e-47 |
| Msa0386300 | Msa1463590 | 0.843283 | 1.540982e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386300 | MtrunA17_Chr3g0144221 | 94.087 | 389 | 7 | 2 | 3 | 375 | 38 | 426 | 0.0 | 746 |
| Msa0386300 | MtrunA17_Chr1g0199651 | 53.846 | 390 | 161 | 4 | 3 | 375 | 41 | 428 | 2.81e-136 | 397 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386300 | AT1G76400.1 | 67.095 | 389 | 111 | 3 | 3 | 375 | 36 | 423 | 0.0 | 522 |
| Msa0386300 | AT1G76400.2 | 67.095 | 389 | 111 | 3 | 3 | 375 | 36 | 423 | 0.0 | 521 |
| Msa0386300 | AT2G01720.1 | 52.296 | 392 | 164 | 5 | 3 | 375 | 36 | 423 | 4.93e-131 | 384 |
Find 100 sgRNAs with CRISPR-Local
Find 362 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGAAATGGTTGCAATATA+TGG | 0.199405 | 3_1:+90091850 | None:intergenic |
| CGCTTCCTTAATATCTCTTT+TGG | 0.225268 | 3_1:-90091049 | Msa0386300:CDS |
| GTCAATCACCAAATCATTAA+TGG | 0.250801 | 3_1:+90091021 | None:intergenic |
| CCACTTCAGGACTTCTTGTT+TGG | 0.252717 | 3_1:-90091085 | Msa0386300:CDS |
| TCGCCCTTCCCAAGGCCTTT+AGG | 0.289486 | 3_1:+90091906 | None:intergenic |
| AAGGAAGAGGGAATATCTTT+AGG | 0.294373 | 3_1:+90091951 | None:intergenic |
| TGTCTTTCTTTCACAGGAAA+TGG | 0.294905 | 3_1:+90090621 | None:intergenic |
| CTGCTGCAGACTTGACTATC+AGG | 0.298525 | 3_1:-90091402 | Msa0386300:intron |
| AAGTGCTTTACATGGTTATC+AGG | 0.308889 | 3_1:+90092059 | None:intergenic |
| TGGATATGGGTTGCCACTTC+AGG | 0.311465 | 3_1:-90091098 | Msa0386300:CDS |
| TTTAGGGCGGGCAACTTCAT+AGG | 0.312228 | 3_1:+90091968 | None:intergenic |
| GCTGGAAAATACAAAACTTC+AGG | 0.319386 | 3_1:-90091697 | Msa0386300:CDS |
| GGGAACCAAAAGAGATATTA+AGG | 0.322733 | 3_1:+90091044 | None:intergenic |
| TCAATCACCAAATCATTAAT+GGG | 0.328904 | 3_1:+90091022 | None:intergenic |
| TATTTCCACTTCTAGTTTGT+GGG | 0.353054 | 3_1:-90091282 | Msa0386300:CDS |
| ATATTTCCACTTCTAGTTTG+TGG | 0.370550 | 3_1:-90091283 | Msa0386300:CDS |
| GAGCATTATAATCTTGTTCA+TGG | 0.371780 | 3_1:-90091522 | Msa0386300:CDS |
| GTAACTTTACCTAAAGGCCT+TGG | 0.391130 | 3_1:-90091915 | Msa0386300:CDS |
| CAGGGATCTGAATTGAAATA+TGG | 0.392730 | 3_1:-90091678 | Msa0386300:CDS |
| TAAGAGGTGCATCTGCCTTT+AGG | 0.408931 | 3_1:-90091367 | Msa0386300:CDS |
| AGGAAGAGGGAATATCTTTA+GGG | 0.416520 | 3_1:+90091952 | None:intergenic |
| GGAAAGGCGAAATCATCTTC+TGG | 0.418481 | 3_1:-90092002 | Msa0386300:CDS |
| GAGCTCATTCTGTTTACTAC+AGG | 0.418845 | 3_1:-90091319 | Msa0386300:CDS |
| GATTGGACCTTCACGGGATA+AGG | 0.432111 | 3_1:+90091765 | None:intergenic |
| CCGCACCACTACCACTCTTA+AGG | 0.447901 | 3_1:-90092670 | Msa0386300:intron |
| GTAATTTAACATTGAGCGAT+TGG | 0.448219 | 3_1:+90091748 | None:intergenic |
| ACCTCATGTCTTTCTTTCAC+AGG | 0.448961 | 3_1:+90090615 | None:intergenic |
| GACTTCTTGTTTGGAGTCGA+TGG | 0.451851 | 3_1:-90091076 | Msa0386300:CDS |
| TAACTTTACCTAAAGGCCTT+GGG | 0.455605 | 3_1:-90091914 | Msa0386300:CDS |
| GTTTACTACAGGGATGAAAT+CGG | 0.459929 | 3_1:-90091308 | Msa0386300:CDS |
| TATTCTGTAACTTTACCTAA+AGG | 0.460646 | 3_1:-90091921 | Msa0386300:CDS |
| TTCTTCTCTAGCACGACAAC+AGG | 0.460738 | 3_1:+90090464 | None:intergenic |
| GGAGATTGAGATATCCCATT+GGG | 0.465275 | 3_1:-90091562 | Msa0386300:CDS |
| TAAAGATATTCCCTCTTCCT+TGG | 0.470995 | 3_1:-90091949 | Msa0386300:CDS |
| TGGAAATGGTTGCAATATAT+GGG | 0.474469 | 3_1:+90091851 | None:intergenic |
| CTGGAAAATACAAAACTTCA+GGG | 0.476503 | 3_1:-90091696 | Msa0386300:CDS |
| AATGGAGGAAGATTCTCATA+TGG | 0.481992 | 3_1:+90091654 | None:intergenic |
| GCGAAATCATCTTCTGGTGT+TGG | 0.483362 | 3_1:-90091996 | Msa0386300:CDS |
| GCAGATGCACCTCTTACATA+TGG | 0.485700 | 3_1:+90091374 | None:intergenic |
| CTTGGCAGTAAGACGCCTAA+AGG | 0.502523 | 3_1:+90091352 | None:intergenic |
| GAGCACCTTAAGAGTGGTAG+TGG | 0.506326 | 3_1:+90092665 | None:intergenic |
| ATTGAGCGATTGGACCTTCA+CGG | 0.508824 | 3_1:+90091758 | None:intergenic |
| AATAGAGTCCTACACAAAGC+TGG | 0.512238 | 3_1:-90091715 | Msa0386300:CDS |
| AGAATAAGTTGCCAAGGAAG+AGG | 0.516063 | 3_1:+90091938 | None:intergenic |
| TGCACCTCTTACATATGGCC+TGG | 0.517740 | 3_1:+90091379 | None:intergenic |
| TTGAGCGATTGGACCTTCAC+GGG | 0.522891 | 3_1:+90091759 | None:intergenic |
| TAGGACTCTATTCTTGCCTC+AGG | 0.522970 | 3_1:+90091726 | None:intergenic |
| TTAGGGCGGGCAACTTCATA+GGG | 0.523395 | 3_1:+90091969 | None:intergenic |
| CAAAATGGATAACAATTGGC+AGG | 0.524969 | 3_1:+90091625 | None:intergenic |
| ATGAGCTCTTGGTGGCAGCT+TGG | 0.525565 | 3_1:+90091334 | None:intergenic |
| GAATAAGTTGCCAAGGAAGA+GGG | 0.531898 | 3_1:+90091939 | None:intergenic |
| TTCACAGGAAATGGAACAGA+TGG | 0.535738 | 3_1:+90090630 | None:intergenic |
| TAGTAAACAGAATGAGCTCT+TGG | 0.535990 | 3_1:+90091323 | None:intergenic |
| CTTTCAGGTTGTCTTGCCAG+AGG | 0.536714 | 3_1:-90090670 | Msa0386300:intron |
| ACAATTGGCAGGTATGAGAA+TGG | 0.537574 | 3_1:+90091636 | None:intergenic |
| TTTCAGGTTGTCTTGCCAGA+GGG | 0.540711 | 3_1:-90090669 | Msa0386300:intron |
| AACTCTTTAGCAACGGCGAA+GGG | 0.542494 | 3_1:+90091591 | None:intergenic |
| TGATCTGTACATTGCCCCAA+TGG | 0.542650 | 3_1:+90091547 | None:intergenic |
| TGAAAATGCTCATTATGCTC+AGG | 0.547728 | 3_1:+90090431 | None:intergenic |
| CAGGCCAGGCCATATGTAAG+AGG | 0.549205 | 3_1:-90091383 | Msa0386300:CDS |
| CTTCGCCGTTGCTAAAGAGT+TGG | 0.554612 | 3_1:-90091589 | Msa0386300:CDS |
| TTACCTAAAGGCCTTGGGAA+GGG | 0.556651 | 3_1:-90091909 | Msa0386300:CDS |
| TCAAACTTTCGCCCTTCCCA+AGG | 0.557699 | 3_1:+90091898 | None:intergenic |
| GTCACCCCACAAACTAGAAG+TGG | 0.557838 | 3_1:+90091277 | None:intergenic |
| CTTTACATGGTTATCAGGAA+AGG | 0.566975 | 3_1:+90092064 | None:intergenic |
| AGCAACACTTAACGAAGGAA+AGG | 0.568080 | 3_1:-90092024 | Msa0386300:CDS |
| TGTATGCTAAGTGCTTTACA+TGG | 0.568391 | 3_1:+90092051 | None:intergenic |
| ATTTCCACTTCTAGTTTGTG+GGG | 0.568670 | 3_1:-90091281 | Msa0386300:CDS |
| GCAGACTTGACTATCAGGCC+AGG | 0.579305 | 3_1:-90091397 | Msa0386300:intron |
| GCAACACTTAACGAAGGAAA+GGG | 0.580045 | 3_1:-90092023 | Msa0386300:CDS |
| GTGTCGCAGGTAGAGAATGC+AGG | 0.581081 | 3_1:-90092116 | Msa0386300:intron |
| TCTTTCTCCTTATCCCGTGA+AGG | 0.581200 | 3_1:-90091772 | Msa0386300:CDS |
| TTTACCTAAAGGCCTTGGGA+AGG | 0.581516 | 3_1:-90091910 | Msa0386300:CDS |
| CAATCACCAAATCATTAATG+GGG | 0.584647 | 3_1:+90091023 | None:intergenic |
| AGTTACAGAATAAGTTGCCA+AGG | 0.586321 | 3_1:+90091932 | None:intergenic |
| TAAACAGAATGAGCTCTTGG+TGG | 0.587661 | 3_1:+90091326 | None:intergenic |
| CCAAACAAGAAGTCCTGAAG+TGG | 0.588215 | 3_1:+90091085 | None:intergenic |
| AGAGGGAATATCTTTAGGGC+GGG | 0.593848 | 3_1:+90091956 | None:intergenic |
| AACTTTGAGCACCTTAAGAG+TGG | 0.594308 | 3_1:+90092659 | None:intergenic |
| CCGTTGCTAAAGAGTTGGTG+AGG | 0.595956 | 3_1:-90091584 | Msa0386300:CDS |
| CAACTCTTTAGCAACGGCGA+AGG | 0.602379 | 3_1:+90091590 | None:intergenic |
| CATGGCGGTGCTCAGAGCAA+AGG | 0.603405 | 3_1:-90091504 | Msa0386300:CDS |
| AGCTCATTCTGTTTACTACA+GGG | 0.610364 | 3_1:-90091318 | Msa0386300:CDS |
| GATTGACACTCTTGTTGTGA+AGG | 0.615337 | 3_1:-90091005 | Msa0386300:intron |
| GATCTGTACATTGCCCCAAT+GGG | 0.625357 | 3_1:+90091548 | None:intergenic |
| AAGTGGCAACCCATATCCAA+TGG | 0.630677 | 3_1:+90091102 | None:intergenic |
| GGGAGATTGAGATATCCCAT+TGG | 0.633387 | 3_1:-90091563 | Msa0386300:CDS |
| CGTTGCTAAAGAGTTGGTGA+GGG | 0.643300 | 3_1:-90091583 | Msa0386300:CDS |
| ACTTAACGAAGGAAAGGGAA+AGG | 0.652066 | 3_1:-90092018 | Msa0386300:CDS |
| AAGAGGGAATATCTTTAGGG+CGG | 0.659670 | 3_1:+90091955 | None:intergenic |
| TCCTGTGAAAGAAAGACATG+AGG | 0.667785 | 3_1:-90090616 | Msa0386300:intron |
| GCTCAATGTTAAATTACCTG+AGG | 0.670175 | 3_1:-90091742 | Msa0386300:CDS |
| AATCACCAAATCATTAATGG+GGG | 0.672170 | 3_1:+90091024 | None:intergenic |
| CCTCACCAACTCTTTAGCAA+CGG | 0.676013 | 3_1:+90091584 | None:intergenic |
| CCTTAAGAGTGGTAGTGGTG+CGG | 0.677361 | 3_1:+90092670 | None:intergenic |
| ATTGGCAGGTATGAGAATGG+AGG | 0.680768 | 3_1:+90091639 | None:intergenic |
| ATGTCAGCAACACTTAACGA+AGG | 0.697211 | 3_1:-90092029 | Msa0386300:CDS |
| CATTATAATCTTGTTCATGG+CGG | 0.724346 | 3_1:-90091519 | Msa0386300:CDS |
| CAGAACTTGAGATCGAACCT+CGG | 0.724721 | 3_1:-90091159 | Msa0386300:CDS |
| GAGATTGAGATATCCCATTG+GGG | 0.726808 | 3_1:-90091561 | Msa0386300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTGTG+TGG | - | chr3_1:90090567-90090586 | Msa0386300:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTGTGT+GGG | - | chr3_1:90090568-90090587 | Msa0386300:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTTGTG+TGG | - | chr3_1:90090567-90090586 | Msa0386300:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTGTGT+GGG | - | chr3_1:90090568-90090587 | Msa0386300:intron | 10.0% |
| !!! | TAAGTTAAATTACAAAGTTT+TGG | + | chr3_1:90090618-90090637 | None:intergenic | 15.0% |
| !!! | TAAGTTAAATTACAAAGTTT+TGG | + | chr3_1:90090618-90090637 | None:intergenic | 15.0% |
| !!! | TGAACTTTAGTTTAAAAACT+TGG | - | chr3_1:90090865-90090884 | Msa0386300:intron | 20.0% |
| !! | AAGAAAGTAAAATTATGTGT+TGG | + | chr3_1:90092228-90092247 | None:intergenic | 20.0% |
| !!! | TGAACTTTAGTTTAAAAACT+TGG | - | chr3_1:90090865-90090884 | Msa0386300:intron | 20.0% |
| !! | AAGAAAGTAAAATTATGTGT+TGG | + | chr3_1:90092228-90092247 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTTGTGTGGG+TGG | - | chr3_1:90090571-90090590 | Msa0386300:intron | 25.0% |
| !!! | TTTTTTTTTTTTGTGTGGGT+GGG | - | chr3_1:90090572-90090591 | Msa0386300:intron | 25.0% |
| !! | TGTCATTGTATTTTATCATG+TGG | + | chr3_1:90090801-90090820 | None:intergenic | 25.0% |
| ! | ACATGATAAAATACAATGAC+AGG | - | chr3_1:90090800-90090819 | Msa0386300:intron | 25.0% |
| ! | CATGATAAAATACAATGACA+GGG | - | chr3_1:90090801-90090820 | Msa0386300:intron | 25.0% |
| ! | TATTCTGTAACTTTACCTAA+AGG | - | chr3_1:90091264-90091283 | Msa0386300:intron | 25.0% |
| ! | TTCTCAAAATGGATAACAAT+TGG | + | chr3_1:90091567-90091586 | None:intergenic | 25.0% |
| ! | TCAATCACCAAATCATTAAT+GGG | + | chr3_1:90092166-90092185 | None:intergenic | 25.0% |
| !!! | TCATTATTTTGTTGCAAACT+TGG | - | chr3_1:90092256-90092275 | Msa0386300:intron | 25.0% |
| !!! | TTTACCTGTATATTTTTCAG+AGG | - | chr3_1:90092327-90092346 | Msa0386300:intron | 25.0% |
| ! | ACATAGATATCTATCATCTA+TGG | + | chr3_1:90092622-90092641 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTTTTGTGTGGG+TGG | - | chr3_1:90090571-90090590 | Msa0386300:intron | 25.0% |
| !!! | TTTTTTTTTTTTGTGTGGGT+GGG | - | chr3_1:90090572-90090591 | Msa0386300:intron | 25.0% |
| !! | TGTCATTGTATTTTATCATG+TGG | + | chr3_1:90090801-90090820 | None:intergenic | 25.0% |
| ! | ACATGATAAAATACAATGAC+AGG | - | chr3_1:90090800-90090819 | Msa0386300:intron | 25.0% |
| ! | CATGATAAAATACAATGACA+GGG | - | chr3_1:90090801-90090820 | Msa0386300:intron | 25.0% |
| ! | TATTCTGTAACTTTACCTAA+AGG | - | chr3_1:90091264-90091283 | Msa0386300:intron | 25.0% |
| ! | TTCTCAAAATGGATAACAAT+TGG | + | chr3_1:90091567-90091586 | None:intergenic | 25.0% |
| ! | TCAATCACCAAATCATTAAT+GGG | + | chr3_1:90092166-90092185 | None:intergenic | 25.0% |
| !!! | TCATTATTTTGTTGCAAACT+TGG | - | chr3_1:90092256-90092275 | Msa0386300:intron | 25.0% |
| !!! | TTTACCTGTATATTTTTCAG+AGG | - | chr3_1:90092327-90092346 | Msa0386300:intron | 25.0% |
| ! | ACATAGATATCTATCATCTA+TGG | + | chr3_1:90092622-90092641 | None:intergenic | 25.0% |
| AGATCAATCTGCAAACAATA+GGG | + | chr3_1:90090480-90090499 | None:intergenic | 30.0% | |
| !!! | TACAAAGTTTTGGAGACAAT+TGG | + | chr3_1:90090608-90090627 | None:intergenic | 30.0% |
| GCATCAAAGGAAATAAGATA+AGG | + | chr3_1:90091013-90091032 | None:intergenic | 30.0% | |
| TGGAAATGGTTGCAATATAT+GGG | + | chr3_1:90091337-90091356 | None:intergenic | 30.0% | |
| GTAATTTAACATTGAGCGAT+TGG | + | chr3_1:90091440-90091459 | None:intergenic | 30.0% | |
| CTGGAAAATACAAAACTTCA+GGG | - | chr3_1:90091489-90091508 | Msa0386300:intron | 30.0% | |
| GAGCATTATAATCTTGTTCA+TGG | - | chr3_1:90091663-90091682 | Msa0386300:CDS | 30.0% | |
| CATTATAATCTTGTTCATGG+CGG | - | chr3_1:90091666-90091685 | Msa0386300:CDS | 30.0% | |
| AATTCAGAATCACAGAAACA+AGG | + | chr3_1:90091723-90091742 | None:intergenic | 30.0% | |
| !! | ATATTTCCACTTCTAGTTTG+TGG | - | chr3_1:90091902-90091921 | Msa0386300:intron | 30.0% |
| !! | TATTTCCACTTCTAGTTTGT+GGG | - | chr3_1:90091903-90091922 | Msa0386300:intron | 30.0% |
| AATCACCAAATCATTAATGG+GGG | + | chr3_1:90092164-90092183 | None:intergenic | 30.0% | |
| CAATCACCAAATCATTAATG+GGG | + | chr3_1:90092165-90092184 | None:intergenic | 30.0% | |
| GTCAATCACCAAATCATTAA+TGG | + | chr3_1:90092167-90092186 | None:intergenic | 30.0% | |
| ! | AGTTCCTCTGAAAAATATAC+AGG | + | chr3_1:90092334-90092353 | None:intergenic | 30.0% |
| !!! | TTTTTCCTGCTTTTTGTCAT+TGG | - | chr3_1:90092430-90092449 | Msa0386300:intron | 30.0% |
| GTCATTGTAGTATATTGTGT+AGG | - | chr3_1:90092458-90092477 | Msa0386300:intron | 30.0% | |
| AGATATCTATCATCTATGGT+TGG | + | chr3_1:90092618-90092637 | None:intergenic | 30.0% | |
| ATCTATGTCATTCCATTGTT+TGG | - | chr3_1:90092634-90092653 | Msa0386300:intron | 30.0% | |
| TCTATGTCATTCCATTGTTT+GGG | - | chr3_1:90092635-90092654 | Msa0386300:intron | 30.0% | |
| CTTTGTCTGCAACAATTATA+TGG | + | chr3_1:90092674-90092693 | None:intergenic | 30.0% | |
| AGATCAATCTGCAAACAATA+GGG | + | chr3_1:90090480-90090499 | None:intergenic | 30.0% | |
| !!! | TACAAAGTTTTGGAGACAAT+TGG | + | chr3_1:90090608-90090627 | None:intergenic | 30.0% |
| GCATCAAAGGAAATAAGATA+AGG | + | chr3_1:90091013-90091032 | None:intergenic | 30.0% | |
| TGGAAATGGTTGCAATATAT+GGG | + | chr3_1:90091337-90091356 | None:intergenic | 30.0% | |
| GTAATTTAACATTGAGCGAT+TGG | + | chr3_1:90091440-90091459 | None:intergenic | 30.0% | |
| CTGGAAAATACAAAACTTCA+GGG | - | chr3_1:90091489-90091508 | Msa0386300:intron | 30.0% | |
| GAGCATTATAATCTTGTTCA+TGG | - | chr3_1:90091663-90091682 | Msa0386300:CDS | 30.0% | |
| CATTATAATCTTGTTCATGG+CGG | - | chr3_1:90091666-90091685 | Msa0386300:CDS | 30.0% | |
| AATTCAGAATCACAGAAACA+AGG | + | chr3_1:90091723-90091742 | None:intergenic | 30.0% | |
| !! | ATATTTCCACTTCTAGTTTG+TGG | - | chr3_1:90091902-90091921 | Msa0386300:intron | 30.0% |
| !! | TATTTCCACTTCTAGTTTGT+GGG | - | chr3_1:90091903-90091922 | Msa0386300:intron | 30.0% |
| AATCACCAAATCATTAATGG+GGG | + | chr3_1:90092164-90092183 | None:intergenic | 30.0% | |
| CAATCACCAAATCATTAATG+GGG | + | chr3_1:90092165-90092184 | None:intergenic | 30.0% | |
| GTCAATCACCAAATCATTAA+TGG | + | chr3_1:90092167-90092186 | None:intergenic | 30.0% | |
| ! | AGTTCCTCTGAAAAATATAC+AGG | + | chr3_1:90092334-90092353 | None:intergenic | 30.0% |
| !!! | TTTTTCCTGCTTTTTGTCAT+TGG | - | chr3_1:90092430-90092449 | Msa0386300:intron | 30.0% |
| GTCATTGTAGTATATTGTGT+AGG | - | chr3_1:90092458-90092477 | Msa0386300:intron | 30.0% | |
| AGATATCTATCATCTATGGT+TGG | + | chr3_1:90092618-90092637 | None:intergenic | 30.0% | |
| ATCTATGTCATTCCATTGTT+TGG | - | chr3_1:90092634-90092653 | Msa0386300:intron | 30.0% | |
| TCTATGTCATTCCATTGTTT+GGG | - | chr3_1:90092635-90092654 | Msa0386300:intron | 30.0% | |
| CTTTGTCTGCAACAATTATA+TGG | + | chr3_1:90092674-90092693 | None:intergenic | 30.0% | |
| TGCAAACAATAGGGAAACAA+TGG | + | chr3_1:90090471-90090490 | None:intergenic | 35.0% | |
| CAGATCAATCTGCAAACAAT+AGG | + | chr3_1:90090481-90090500 | None:intergenic | 35.0% | |
| AAGTTCAGTAGACAACAACA+TGG | + | chr3_1:90090757-90090776 | None:intergenic | 35.0% | |
| TTCATACTTGTGCAAATGAG+AGG | - | chr3_1:90090921-90090940 | Msa0386300:intron | 35.0% | |
| GAGCAATTACATTTAGCAAG+TGG | + | chr3_1:90090982-90091001 | None:intergenic | 35.0% | |
| AAAGTAAATCGCAGCATCAA+AGG | + | chr3_1:90091026-90091045 | None:intergenic | 35.0% | |
| CTTTACATGGTTATCAGGAA+AGG | + | chr3_1:90091124-90091143 | None:intergenic | 35.0% | |
| AAGTGCTTTACATGGTTATC+AGG | + | chr3_1:90091129-90091148 | None:intergenic | 35.0% | |
| TGTATGCTAAGTGCTTTACA+TGG | + | chr3_1:90091137-90091156 | None:intergenic | 35.0% | |
| AGGAAGAGGGAATATCTTTA+GGG | + | chr3_1:90091236-90091255 | None:intergenic | 35.0% | |
| AAGGAAGAGGGAATATCTTT+AGG | + | chr3_1:90091237-90091256 | None:intergenic | 35.0% | |
| TAAAGATATTCCCTCTTCCT+TGG | - | chr3_1:90091236-90091255 | Msa0386300:intron | 35.0% | |
| AGTTACAGAATAAGTTGCCA+AGG | + | chr3_1:90091256-90091275 | None:intergenic | 35.0% | |
| TAACTTTACCTAAAGGCCTT+GGG | - | chr3_1:90091271-90091290 | Msa0386300:CDS | 35.0% | |
| CTGGAAATGGTTGCAATATA+TGG | + | chr3_1:90091338-90091357 | None:intergenic | 35.0% | |
| !! | TGCGTAATTTTCTCTGGAAA+TGG | + | chr3_1:90091351-90091370 | None:intergenic | 35.0% |
| GCTCAATGTTAAATTACCTG+AGG | - | chr3_1:90091443-90091462 | Msa0386300:intron | 35.0% | |
| !! | TGTATTTTCCAGCTTTGTGT+AGG | + | chr3_1:90091481-90091500 | None:intergenic | 35.0% |
| GCTGGAAAATACAAAACTTC+AGG | - | chr3_1:90091488-90091507 | Msa0386300:intron | 35.0% | |
| CAGGGATCTGAATTGAAATA+TGG | - | chr3_1:90091507-90091526 | Msa0386300:CDS | 35.0% | |
| AATGGAGGAAGATTCTCATA+TGG | + | chr3_1:90091534-90091553 | None:intergenic | 35.0% | |
| CAAAATGGATAACAATTGGC+AGG | + | chr3_1:90091563-90091582 | None:intergenic | 35.0% | |
| AGGGCTGATTATTCTCAAAA+TGG | + | chr3_1:90091578-90091597 | None:intergenic | 35.0% | |
| TAGTAAACAGAATGAGCTCT+TGG | + | chr3_1:90091865-90091884 | None:intergenic | 35.0% | |
| AGCTCATTCTGTTTACTACA+GGG | - | chr3_1:90091867-90091886 | Msa0386300:intron | 35.0% | |
| GTTTACTACAGGGATGAAAT+CGG | - | chr3_1:90091877-90091896 | Msa0386300:intron | 35.0% | |
| !! | ATTTCCACTTCTAGTTTGTG+GGG | - | chr3_1:90091904-90091923 | Msa0386300:CDS | 35.0% |
| !! | TGGAAAACTGCTTTTACCAT+TGG | - | chr3_1:90092067-90092086 | Msa0386300:CDS | 35.0% |
| !! | ACTGCTTTTACCATTGGATA+TGG | - | chr3_1:90092073-90092092 | Msa0386300:CDS | 35.0% |
| !! | CTGCTTTTACCATTGGATAT+GGG | - | chr3_1:90092074-90092093 | Msa0386300:CDS | 35.0% |
| ! | CGCTTCCTTAATATCTCTTT+TGG | - | chr3_1:90092136-90092155 | Msa0386300:intron | 35.0% |
| GGGAACCAAAAGAGATATTA+AGG | + | chr3_1:90092144-90092163 | None:intergenic | 35.0% | |
| CAAACTTGGAATGCAATCTT+TGG | - | chr3_1:90092270-90092289 | Msa0386300:intron | 35.0% | |
| ! | AGGAACTAGAAGTATAGTAC+AGG | - | chr3_1:90092347-90092366 | Msa0386300:intron | 35.0% |
| AACAACCAATGACAAAAAGC+AGG | + | chr3_1:90092438-90092457 | None:intergenic | 35.0% | |
| TGACTTACTAATACATCTGC+CGG | - | chr3_1:90092483-90092502 | Msa0386300:intron | 35.0% | |
| ! | GAAATATCTTTTGAACCCTC+TGG | + | chr3_1:90092534-90092553 | None:intergenic | 35.0% |
| TGTCTTTCTTTCACAGGAAA+TGG | + | chr3_1:90092567-90092586 | None:intergenic | 35.0% | |
| GGACTATAAAACCCAAACAA+TGG | + | chr3_1:90092649-90092668 | None:intergenic | 35.0% | |
| GTCTGCAACAATTATATGGA+TGG | + | chr3_1:90092670-90092689 | None:intergenic | 35.0% | |
| ! | TTTTCACACTTGGATATTGC+TGG | - | chr3_1:90092694-90092713 | Msa0386300:CDS | 35.0% |
| TGAAAATGCTCATTATGCTC+AGG | + | chr3_1:90092757-90092776 | None:intergenic | 35.0% | |
| TGCAAACAATAGGGAAACAA+TGG | + | chr3_1:90090471-90090490 | None:intergenic | 35.0% | |
| CAGATCAATCTGCAAACAAT+AGG | + | chr3_1:90090481-90090500 | None:intergenic | 35.0% | |
| AAGTTCAGTAGACAACAACA+TGG | + | chr3_1:90090757-90090776 | None:intergenic | 35.0% | |
| TTCATACTTGTGCAAATGAG+AGG | - | chr3_1:90090921-90090940 | Msa0386300:intron | 35.0% | |
| GAGCAATTACATTTAGCAAG+TGG | + | chr3_1:90090982-90091001 | None:intergenic | 35.0% | |
| AAAGTAAATCGCAGCATCAA+AGG | + | chr3_1:90091026-90091045 | None:intergenic | 35.0% | |
| CTTTACATGGTTATCAGGAA+AGG | + | chr3_1:90091124-90091143 | None:intergenic | 35.0% | |
| AAGTGCTTTACATGGTTATC+AGG | + | chr3_1:90091129-90091148 | None:intergenic | 35.0% | |
| TGTATGCTAAGTGCTTTACA+TGG | + | chr3_1:90091137-90091156 | None:intergenic | 35.0% | |
| AGGAAGAGGGAATATCTTTA+GGG | + | chr3_1:90091236-90091255 | None:intergenic | 35.0% | |
| AAGGAAGAGGGAATATCTTT+AGG | + | chr3_1:90091237-90091256 | None:intergenic | 35.0% | |
| TAAAGATATTCCCTCTTCCT+TGG | - | chr3_1:90091236-90091255 | Msa0386300:intron | 35.0% | |
| AGTTACAGAATAAGTTGCCA+AGG | + | chr3_1:90091256-90091275 | None:intergenic | 35.0% | |
| TAACTTTACCTAAAGGCCTT+GGG | - | chr3_1:90091271-90091290 | Msa0386300:CDS | 35.0% | |
| CTGGAAATGGTTGCAATATA+TGG | + | chr3_1:90091338-90091357 | None:intergenic | 35.0% | |
| !! | TGCGTAATTTTCTCTGGAAA+TGG | + | chr3_1:90091351-90091370 | None:intergenic | 35.0% |
| GCTCAATGTTAAATTACCTG+AGG | - | chr3_1:90091443-90091462 | Msa0386300:intron | 35.0% | |
| !! | TGTATTTTCCAGCTTTGTGT+AGG | + | chr3_1:90091481-90091500 | None:intergenic | 35.0% |
| GCTGGAAAATACAAAACTTC+AGG | - | chr3_1:90091488-90091507 | Msa0386300:intron | 35.0% | |
| CAGGGATCTGAATTGAAATA+TGG | - | chr3_1:90091507-90091526 | Msa0386300:CDS | 35.0% | |
| AATGGAGGAAGATTCTCATA+TGG | + | chr3_1:90091534-90091553 | None:intergenic | 35.0% | |
| CAAAATGGATAACAATTGGC+AGG | + | chr3_1:90091563-90091582 | None:intergenic | 35.0% | |
| AGGGCTGATTATTCTCAAAA+TGG | + | chr3_1:90091578-90091597 | None:intergenic | 35.0% | |
| TAGTAAACAGAATGAGCTCT+TGG | + | chr3_1:90091865-90091884 | None:intergenic | 35.0% | |
| AGCTCATTCTGTTTACTACA+GGG | - | chr3_1:90091867-90091886 | Msa0386300:intron | 35.0% | |
| GTTTACTACAGGGATGAAAT+CGG | - | chr3_1:90091877-90091896 | Msa0386300:intron | 35.0% | |
| !! | ATTTCCACTTCTAGTTTGTG+GGG | - | chr3_1:90091904-90091923 | Msa0386300:CDS | 35.0% |
| !! | TGGAAAACTGCTTTTACCAT+TGG | - | chr3_1:90092067-90092086 | Msa0386300:CDS | 35.0% |
| !! | ACTGCTTTTACCATTGGATA+TGG | - | chr3_1:90092073-90092092 | Msa0386300:CDS | 35.0% |
| !! | CTGCTTTTACCATTGGATAT+GGG | - | chr3_1:90092074-90092093 | Msa0386300:CDS | 35.0% |
| ! | CGCTTCCTTAATATCTCTTT+TGG | - | chr3_1:90092136-90092155 | Msa0386300:intron | 35.0% |
| GGGAACCAAAAGAGATATTA+AGG | + | chr3_1:90092144-90092163 | None:intergenic | 35.0% | |
| CAAACTTGGAATGCAATCTT+TGG | - | chr3_1:90092270-90092289 | Msa0386300:intron | 35.0% | |
| ! | AGGAACTAGAAGTATAGTAC+AGG | - | chr3_1:90092347-90092366 | Msa0386300:intron | 35.0% |
| AACAACCAATGACAAAAAGC+AGG | + | chr3_1:90092438-90092457 | None:intergenic | 35.0% | |
| TGACTTACTAATACATCTGC+CGG | - | chr3_1:90092483-90092502 | Msa0386300:intron | 35.0% | |
| ! | GAAATATCTTTTGAACCCTC+TGG | + | chr3_1:90092534-90092553 | None:intergenic | 35.0% |
| TGTCTTTCTTTCACAGGAAA+TGG | + | chr3_1:90092567-90092586 | None:intergenic | 35.0% | |
| GGACTATAAAACCCAAACAA+TGG | + | chr3_1:90092649-90092668 | None:intergenic | 35.0% | |
| GTCTGCAACAATTATATGGA+TGG | + | chr3_1:90092670-90092689 | None:intergenic | 35.0% | |
| ! | TTTTCACACTTGGATATTGC+TGG | - | chr3_1:90092694-90092713 | Msa0386300:CDS | 35.0% |
| TGAAAATGCTCATTATGCTC+AGG | + | chr3_1:90092757-90092776 | None:intergenic | 35.0% | |
| GGGAAACAATGGTCAGAAAA+AGG | + | chr3_1:90090460-90090479 | None:intergenic | 40.0% | |
| AACTTTGAGCACCTTAAGAG+TGG | + | chr3_1:90090529-90090548 | None:intergenic | 40.0% | |
| ATTTGAACAAAGGCTTACGG+AGG | + | chr3_1:90090646-90090665 | None:intergenic | 40.0% | |
| TCCGTAAGCCTTTGTTCAAA+TGG | - | chr3_1:90090645-90090664 | Msa0386300:CDS | 40.0% | |
| GCCATTTGAACAAAGGCTTA+CGG | + | chr3_1:90090649-90090668 | None:intergenic | 40.0% | |
| ! | CACAGTTGTCTGTGAGTTTT+AGG | - | chr3_1:90090722-90090741 | Msa0386300:intron | 40.0% |
| !!! | AGTTGTCTGTGAGTTTTAGG+TGG | - | chr3_1:90090725-90090744 | Msa0386300:intron | 40.0% |
| GGTTAAGTAGTTGCGAACAT+AGG | - | chr3_1:90090822-90090841 | Msa0386300:intron | 40.0% | |
| TATTATCTTCCTTGTGTCGC+AGG | - | chr3_1:90091056-90091075 | Msa0386300:CDS | 40.0% | |
| ATGTCAGCAACACTTAACGA+AGG | - | chr3_1:90091156-90091175 | Msa0386300:CDS | 40.0% | |
| AGCAACACTTAACGAAGGAA+AGG | - | chr3_1:90091161-90091180 | Msa0386300:CDS | 40.0% | |
| GCAACACTTAACGAAGGAAA+GGG | - | chr3_1:90091162-90091181 | Msa0386300:CDS | 40.0% | |
| ACTTAACGAAGGAAAGGGAA+AGG | - | chr3_1:90091167-90091186 | Msa0386300:intron | 40.0% | |
| ! | AAGAGGGAATATCTTTAGGG+CGG | + | chr3_1:90091233-90091252 | None:intergenic | 40.0% |
| GAATAAGTTGCCAAGGAAGA+GGG | + | chr3_1:90091249-90091268 | None:intergenic | 40.0% | |
| AGAATAAGTTGCCAAGGAAG+AGG | + | chr3_1:90091250-90091269 | None:intergenic | 40.0% | |
| GTAACTTTACCTAAAGGCCT+TGG | - | chr3_1:90091270-90091289 | Msa0386300:CDS | 40.0% | |
| ! | TCAGCTTGCGTAATTTTCTC+TGG | + | chr3_1:90091357-90091376 | None:intergenic | 40.0% |
| AATAGAGTCCTACACAAAGC+TGG | - | chr3_1:90091470-90091489 | Msa0386300:intron | 40.0% | |
| ACAATTGGCAGGTATGAGAA+TGG | + | chr3_1:90091552-90091571 | None:intergenic | 40.0% | |
| GGAGATTGAGATATCCCATT+GGG | - | chr3_1:90091623-90091642 | Msa0386300:intron | 40.0% | |
| GAGATTGAGATATCCCATTG+GGG | - | chr3_1:90091624-90091643 | Msa0386300:intron | 40.0% | |
| ! | AGAGCAAAGGAGAATTTTCC+AGG | - | chr3_1:90091694-90091713 | Msa0386300:CDS | 40.0% |
| ATCACAGAAACAAGGTAACC+TGG | + | chr3_1:90091715-90091734 | None:intergenic | 40.0% | |
| TAAACAGAATGAGCTCTTGG+TGG | + | chr3_1:90091862-90091881 | None:intergenic | 40.0% | |
| GAGCTCATTCTGTTTACTAC+AGG | - | chr3_1:90091866-90091885 | Msa0386300:intron | 40.0% | |
| TTTGTGGGGTGACTCAAAAA+AGG | - | chr3_1:90091918-90091937 | Msa0386300:CDS | 40.0% | |
| ! | TTTTCCAGCCACCAAAAAGT+GGG | + | chr3_1:90092054-90092073 | None:intergenic | 40.0% |
| TGGTTCCCCCATTAATGATT+TGG | - | chr3_1:90092156-90092175 | Msa0386300:intron | 40.0% | |
| ! | GATTGACACTCTTGTTGTGA+AGG | - | chr3_1:90092180-90092199 | Msa0386300:intron | 40.0% |
| TTCACAGGAAATGGAACAGA+TGG | + | chr3_1:90092558-90092577 | None:intergenic | 40.0% | |
| TCCTGTGAAAGAAAGACATG+AGG | - | chr3_1:90092569-90092588 | Msa0386300:intron | 40.0% | |
| ACCTCATGTCTTTCTTTCAC+AGG | + | chr3_1:90092573-90092592 | None:intergenic | 40.0% | |
| ! | GCAGACAAAGTTTTCACACT+TGG | - | chr3_1:90092684-90092703 | Msa0386300:CDS | 40.0% |
| GGGAAACAATGGTCAGAAAA+AGG | + | chr3_1:90090460-90090479 | None:intergenic | 40.0% | |
| AACTTTGAGCACCTTAAGAG+TGG | + | chr3_1:90090529-90090548 | None:intergenic | 40.0% | |
| ATTTGAACAAAGGCTTACGG+AGG | + | chr3_1:90090646-90090665 | None:intergenic | 40.0% | |
| TCCGTAAGCCTTTGTTCAAA+TGG | - | chr3_1:90090645-90090664 | Msa0386300:CDS | 40.0% | |
| GCCATTTGAACAAAGGCTTA+CGG | + | chr3_1:90090649-90090668 | None:intergenic | 40.0% | |
| ! | CACAGTTGTCTGTGAGTTTT+AGG | - | chr3_1:90090722-90090741 | Msa0386300:intron | 40.0% |
| !!! | AGTTGTCTGTGAGTTTTAGG+TGG | - | chr3_1:90090725-90090744 | Msa0386300:intron | 40.0% |
| GGTTAAGTAGTTGCGAACAT+AGG | - | chr3_1:90090822-90090841 | Msa0386300:intron | 40.0% | |
| TATTATCTTCCTTGTGTCGC+AGG | - | chr3_1:90091056-90091075 | Msa0386300:CDS | 40.0% | |
| ATGTCAGCAACACTTAACGA+AGG | - | chr3_1:90091156-90091175 | Msa0386300:CDS | 40.0% | |
| AGCAACACTTAACGAAGGAA+AGG | - | chr3_1:90091161-90091180 | Msa0386300:CDS | 40.0% | |
| GCAACACTTAACGAAGGAAA+GGG | - | chr3_1:90091162-90091181 | Msa0386300:CDS | 40.0% | |
| ACTTAACGAAGGAAAGGGAA+AGG | - | chr3_1:90091167-90091186 | Msa0386300:intron | 40.0% | |
| ! | AAGAGGGAATATCTTTAGGG+CGG | + | chr3_1:90091233-90091252 | None:intergenic | 40.0% |
| GAATAAGTTGCCAAGGAAGA+GGG | + | chr3_1:90091249-90091268 | None:intergenic | 40.0% | |
| AGAATAAGTTGCCAAGGAAG+AGG | + | chr3_1:90091250-90091269 | None:intergenic | 40.0% | |
| GTAACTTTACCTAAAGGCCT+TGG | - | chr3_1:90091270-90091289 | Msa0386300:CDS | 40.0% | |
| ! | TCAGCTTGCGTAATTTTCTC+TGG | + | chr3_1:90091357-90091376 | None:intergenic | 40.0% |
| AATAGAGTCCTACACAAAGC+TGG | - | chr3_1:90091470-90091489 | Msa0386300:intron | 40.0% | |
| ACAATTGGCAGGTATGAGAA+TGG | + | chr3_1:90091552-90091571 | None:intergenic | 40.0% | |
| GGAGATTGAGATATCCCATT+GGG | - | chr3_1:90091623-90091642 | Msa0386300:intron | 40.0% | |
| GAGATTGAGATATCCCATTG+GGG | - | chr3_1:90091624-90091643 | Msa0386300:intron | 40.0% | |
| ! | AGAGCAAAGGAGAATTTTCC+AGG | - | chr3_1:90091694-90091713 | Msa0386300:CDS | 40.0% |
| ATCACAGAAACAAGGTAACC+TGG | + | chr3_1:90091715-90091734 | None:intergenic | 40.0% | |
| TAAACAGAATGAGCTCTTGG+TGG | + | chr3_1:90091862-90091881 | None:intergenic | 40.0% | |
| GAGCTCATTCTGTTTACTAC+AGG | - | chr3_1:90091866-90091885 | Msa0386300:intron | 40.0% | |
| TTTGTGGGGTGACTCAAAAA+AGG | - | chr3_1:90091918-90091937 | Msa0386300:CDS | 40.0% | |
| ! | TTTTCCAGCCACCAAAAAGT+GGG | + | chr3_1:90092054-90092073 | None:intergenic | 40.0% |
| TGGTTCCCCCATTAATGATT+TGG | - | chr3_1:90092156-90092175 | Msa0386300:intron | 40.0% | |
| ! | GATTGACACTCTTGTTGTGA+AGG | - | chr3_1:90092180-90092199 | Msa0386300:intron | 40.0% |
| TTCACAGGAAATGGAACAGA+TGG | + | chr3_1:90092558-90092577 | None:intergenic | 40.0% | |
| TCCTGTGAAAGAAAGACATG+AGG | - | chr3_1:90092569-90092588 | Msa0386300:intron | 40.0% | |
| ACCTCATGTCTTTCTTTCAC+AGG | + | chr3_1:90092573-90092592 | None:intergenic | 40.0% | |
| ! | GCAGACAAAGTTTTCACACT+TGG | - | chr3_1:90092684-90092703 | Msa0386300:CDS | 40.0% |
| ! | GGGCATTGCCATTTGAACAA+AGG | + | chr3_1:90090656-90090675 | None:intergenic | 45.0% |
| ATGGCAATGCCCATATTGCT+AGG | - | chr3_1:90090664-90090683 | Msa0386300:CDS | 45.0% | |
| TGTGTCCAGCCTAGCAATAT+GGG | + | chr3_1:90090676-90090695 | None:intergenic | 45.0% | |
| ATGTGTCCAGCCTAGCAATA+TGG | + | chr3_1:90090677-90090696 | None:intergenic | 45.0% | |
| TGAAGTTCCAGGTTTGAACC+CGG | + | chr3_1:90090704-90090723 | None:intergenic | 45.0% | |
| ACAGACAACTGTGAAGTTCC+AGG | + | chr3_1:90090715-90090734 | None:intergenic | 45.0% | |
| AGTTGCGAACATAGGCTTAG+AGG | - | chr3_1:90090830-90090849 | Msa0386300:intron | 45.0% | |
| GGAAAGGCGAAATCATCTTC+TGG | - | chr3_1:90091183-90091202 | Msa0386300:intron | 45.0% | |
| GCGAAATCATCTTCTGGTGT+TGG | - | chr3_1:90091189-90091208 | Msa0386300:intron | 45.0% | |
| !! | AGAGGGAATATCTTTAGGGC+GGG | + | chr3_1:90091232-90091251 | None:intergenic | 45.0% |
| TTTACCTAAAGGCCTTGGGA+AGG | - | chr3_1:90091275-90091294 | Msa0386300:CDS | 45.0% | |
| TTACCTAAAGGCCTTGGGAA+GGG | - | chr3_1:90091276-90091295 | Msa0386300:CDS | 45.0% | |
| TCTTTCTCCTTATCCCGTGA+AGG | - | chr3_1:90091413-90091432 | Msa0386300:intron | 45.0% | |
| ATTGAGCGATTGGACCTTCA+CGG | + | chr3_1:90091430-90091449 | None:intergenic | 45.0% | |
| TAGGACTCTATTCTTGCCTC+AGG | + | chr3_1:90091462-90091481 | None:intergenic | 45.0% | |
| ATTGGCAGGTATGAGAATGG+AGG | + | chr3_1:90091549-90091568 | None:intergenic | 45.0% | |
| AACTCTTTAGCAACGGCGAA+GGG | + | chr3_1:90091597-90091616 | None:intergenic | 45.0% | |
| CCTCACCAACTCTTTAGCAA+CGG | + | chr3_1:90091604-90091623 | None:intergenic | 45.0% | |
| !! | CGTTGCTAAAGAGTTGGTGA+GGG | - | chr3_1:90091602-90091621 | Msa0386300:intron | 45.0% |
| GGGAGATTGAGATATCCCAT+TGG | - | chr3_1:90091622-90091641 | Msa0386300:intron | 45.0% | |
| GATCTGTACATTGCCCCAAT+GGG | + | chr3_1:90091640-90091659 | None:intergenic | 45.0% | |
| TGATCTGTACATTGCCCCAA+TGG | + | chr3_1:90091641-90091660 | None:intergenic | 45.0% | |
| GCAGATGCACCTCTTACATA+TGG | + | chr3_1:90091814-90091833 | None:intergenic | 45.0% | |
| ! | TAAGAGGTGCATCTGCCTTT+AGG | - | chr3_1:90091818-90091837 | Msa0386300:CDS | 45.0% |
| CAGAACTTGAGATCGAACCT+CGG | - | chr3_1:90092026-90092045 | Msa0386300:CDS | 45.0% | |
| ! | GTTTTCCAGCCACCAAAAAG+TGG | + | chr3_1:90092055-90092074 | None:intergenic | 45.0% |
| AAGTGGCAACCCATATCCAA+TGG | + | chr3_1:90092086-90092105 | None:intergenic | 45.0% | |
| CCAAACAAGAAGTCCTGAAG+TGG | + | chr3_1:90092103-90092122 | None:intergenic | 45.0% | |
| CCACTTCAGGACTTCTTGTT+TGG | - | chr3_1:90092100-90092119 | Msa0386300:CDS | 45.0% | |
| ! | GACTTCTTGTTTGGAGTCGA+TGG | - | chr3_1:90092109-90092128 | Msa0386300:CDS | 45.0% |
| AACCTGAAAGTTGCAAGCAC+CGG | + | chr3_1:90092505-90092524 | None:intergenic | 45.0% | |
| !! | TTTCAGGTTGTCTTGCCAGA+GGG | - | chr3_1:90092516-90092535 | Msa0386300:intron | 45.0% |
| TTCTTCTCTAGCACGACAAC+AGG | + | chr3_1:90092724-90092743 | None:intergenic | 45.0% | |
| ! | GGGCATTGCCATTTGAACAA+AGG | + | chr3_1:90090656-90090675 | None:intergenic | 45.0% |
| ATGGCAATGCCCATATTGCT+AGG | - | chr3_1:90090664-90090683 | Msa0386300:CDS | 45.0% | |
| TGTGTCCAGCCTAGCAATAT+GGG | + | chr3_1:90090676-90090695 | None:intergenic | 45.0% | |
| ATGTGTCCAGCCTAGCAATA+TGG | + | chr3_1:90090677-90090696 | None:intergenic | 45.0% | |
| TGAAGTTCCAGGTTTGAACC+CGG | + | chr3_1:90090704-90090723 | None:intergenic | 45.0% | |
| ACAGACAACTGTGAAGTTCC+AGG | + | chr3_1:90090715-90090734 | None:intergenic | 45.0% | |
| AGTTGCGAACATAGGCTTAG+AGG | - | chr3_1:90090830-90090849 | Msa0386300:intron | 45.0% | |
| GGAAAGGCGAAATCATCTTC+TGG | - | chr3_1:90091183-90091202 | Msa0386300:intron | 45.0% | |
| GCGAAATCATCTTCTGGTGT+TGG | - | chr3_1:90091189-90091208 | Msa0386300:intron | 45.0% | |
| !! | AGAGGGAATATCTTTAGGGC+GGG | + | chr3_1:90091232-90091251 | None:intergenic | 45.0% |
| TTTACCTAAAGGCCTTGGGA+AGG | - | chr3_1:90091275-90091294 | Msa0386300:CDS | 45.0% | |
| TTACCTAAAGGCCTTGGGAA+GGG | - | chr3_1:90091276-90091295 | Msa0386300:CDS | 45.0% | |
| TCTTTCTCCTTATCCCGTGA+AGG | - | chr3_1:90091413-90091432 | Msa0386300:intron | 45.0% | |
| ATTGAGCGATTGGACCTTCA+CGG | + | chr3_1:90091430-90091449 | None:intergenic | 45.0% | |
| TAGGACTCTATTCTTGCCTC+AGG | + | chr3_1:90091462-90091481 | None:intergenic | 45.0% | |
| ATTGGCAGGTATGAGAATGG+AGG | + | chr3_1:90091549-90091568 | None:intergenic | 45.0% | |
| AACTCTTTAGCAACGGCGAA+GGG | + | chr3_1:90091597-90091616 | None:intergenic | 45.0% | |
| CCTCACCAACTCTTTAGCAA+CGG | + | chr3_1:90091604-90091623 | None:intergenic | 45.0% | |
| !! | CGTTGCTAAAGAGTTGGTGA+GGG | - | chr3_1:90091602-90091621 | Msa0386300:intron | 45.0% |
| GGGAGATTGAGATATCCCAT+TGG | - | chr3_1:90091622-90091641 | Msa0386300:intron | 45.0% | |
| GATCTGTACATTGCCCCAAT+GGG | + | chr3_1:90091640-90091659 | None:intergenic | 45.0% | |
| TGATCTGTACATTGCCCCAA+TGG | + | chr3_1:90091641-90091660 | None:intergenic | 45.0% | |
| GCAGATGCACCTCTTACATA+TGG | + | chr3_1:90091814-90091833 | None:intergenic | 45.0% | |
| ! | TAAGAGGTGCATCTGCCTTT+AGG | - | chr3_1:90091818-90091837 | Msa0386300:CDS | 45.0% |
| CAGAACTTGAGATCGAACCT+CGG | - | chr3_1:90092026-90092045 | Msa0386300:CDS | 45.0% | |
| ! | GTTTTCCAGCCACCAAAAAG+TGG | + | chr3_1:90092055-90092074 | None:intergenic | 45.0% |
| AAGTGGCAACCCATATCCAA+TGG | + | chr3_1:90092086-90092105 | None:intergenic | 45.0% | |
| CCAAACAAGAAGTCCTGAAG+TGG | + | chr3_1:90092103-90092122 | None:intergenic | 45.0% | |
| CCACTTCAGGACTTCTTGTT+TGG | - | chr3_1:90092100-90092119 | Msa0386300:CDS | 45.0% | |
| ! | GACTTCTTGTTTGGAGTCGA+TGG | - | chr3_1:90092109-90092128 | Msa0386300:CDS | 45.0% |
| AACCTGAAAGTTGCAAGCAC+CGG | + | chr3_1:90092505-90092524 | None:intergenic | 45.0% | |
| !! | TTTCAGGTTGTCTTGCCAGA+GGG | - | chr3_1:90092516-90092535 | Msa0386300:intron | 45.0% |
| TTCTTCTCTAGCACGACAAC+AGG | + | chr3_1:90092724-90092743 | None:intergenic | 45.0% | |
| !! | CCTTAAGAGTGGTAGTGGTG+CGG | + | chr3_1:90090518-90090537 | None:intergenic | 50.0% |
| GAGCACCTTAAGAGTGGTAG+TGG | + | chr3_1:90090523-90090542 | None:intergenic | 50.0% | |
| CAATGCCCATATTGCTAGGC+TGG | - | chr3_1:90090668-90090687 | Msa0386300:intron | 50.0% | |
| CTAGGCTGGACACATTCATC+CGG | - | chr3_1:90090682-90090701 | Msa0386300:intron | 50.0% | |
| TAGGCTGGACACATTCATCC+GGG | - | chr3_1:90090683-90090702 | Msa0386300:intron | 50.0% | |
| CATTCATCCGGGTTCAAACC+TGG | - | chr3_1:90090694-90090713 | Msa0386300:intron | 50.0% | |
| CATTCTCTACCTGCGACACA+AGG | + | chr3_1:90091068-90091087 | None:intergenic | 50.0% | |
| TTAGGGCGGGCAACTTCATA+GGG | + | chr3_1:90091219-90091238 | None:intergenic | 50.0% | |
| ! | TTTAGGGCGGGCAACTTCAT+AGG | + | chr3_1:90091220-90091239 | None:intergenic | 50.0% |
| TCAAACTTTCGCCCTTCCCA+AGG | + | chr3_1:90091290-90091309 | None:intergenic | 50.0% | |
| GAAGGGCGAAAGTTTGACGT+TGG | - | chr3_1:90091293-90091312 | Msa0386300:CDS | 50.0% | |
| GATTGGACCTTCACGGGATA+AGG | + | chr3_1:90091423-90091442 | None:intergenic | 50.0% | |
| TTGAGCGATTGGACCTTCAC+GGG | + | chr3_1:90091429-90091448 | None:intergenic | 50.0% | |
| CAACTCTTTAGCAACGGCGA+AGG | + | chr3_1:90091598-90091617 | None:intergenic | 50.0% | |
| CTTCGCCGTTGCTAAAGAGT+TGG | - | chr3_1:90091596-90091615 | Msa0386300:intron | 50.0% | |
| !! | CCGTTGCTAAAGAGTTGGTG+AGG | - | chr3_1:90091601-90091620 | Msa0386300:intron | 50.0% |
| CTGCTGCAGACTTGACTATC+AGG | - | chr3_1:90091783-90091802 | Msa0386300:CDS | 50.0% | |
| TGCACCTCTTACATATGGCC+TGG | + | chr3_1:90091809-90091828 | None:intergenic | 50.0% | |
| CTTGGCAGTAAGACGCCTAA+AGG | + | chr3_1:90091836-90091855 | None:intergenic | 50.0% | |
| GTCACCCCACAAACTAGAAG+TGG | + | chr3_1:90091911-90091930 | None:intergenic | 50.0% | |
| GTGGGGTGACTCAAAAAAGG+TGG | - | chr3_1:90091921-90091940 | Msa0386300:CDS | 50.0% | |
| !! | GAACCTCGGTACCCACTTTT+TGG | - | chr3_1:90092040-90092059 | Msa0386300:CDS | 50.0% |
| ! | TGGATATGGGTTGCCACTTC+AGG | - | chr3_1:90092087-90092106 | Msa0386300:CDS | 50.0% |
| !! | CTTTCAGGTTGTCTTGCCAG+AGG | - | chr3_1:90092515-90092534 | Msa0386300:intron | 50.0% |
| !! | CCTTAAGAGTGGTAGTGGTG+CGG | + | chr3_1:90090518-90090537 | None:intergenic | 50.0% |
| GAGCACCTTAAGAGTGGTAG+TGG | + | chr3_1:90090523-90090542 | None:intergenic | 50.0% | |
| CAATGCCCATATTGCTAGGC+TGG | - | chr3_1:90090668-90090687 | Msa0386300:intron | 50.0% | |
| CTAGGCTGGACACATTCATC+CGG | - | chr3_1:90090682-90090701 | Msa0386300:intron | 50.0% | |
| TAGGCTGGACACATTCATCC+GGG | - | chr3_1:90090683-90090702 | Msa0386300:intron | 50.0% | |
| CATTCATCCGGGTTCAAACC+TGG | - | chr3_1:90090694-90090713 | Msa0386300:intron | 50.0% | |
| CATTCTCTACCTGCGACACA+AGG | + | chr3_1:90091068-90091087 | None:intergenic | 50.0% | |
| TTAGGGCGGGCAACTTCATA+GGG | + | chr3_1:90091219-90091238 | None:intergenic | 50.0% | |
| ! | TTTAGGGCGGGCAACTTCAT+AGG | + | chr3_1:90091220-90091239 | None:intergenic | 50.0% |
| TCAAACTTTCGCCCTTCCCA+AGG | + | chr3_1:90091290-90091309 | None:intergenic | 50.0% | |
| GAAGGGCGAAAGTTTGACGT+TGG | - | chr3_1:90091293-90091312 | Msa0386300:CDS | 50.0% | |
| GATTGGACCTTCACGGGATA+AGG | + | chr3_1:90091423-90091442 | None:intergenic | 50.0% | |
| TTGAGCGATTGGACCTTCAC+GGG | + | chr3_1:90091429-90091448 | None:intergenic | 50.0% | |
| CAACTCTTTAGCAACGGCGA+AGG | + | chr3_1:90091598-90091617 | None:intergenic | 50.0% | |
| CTTCGCCGTTGCTAAAGAGT+TGG | - | chr3_1:90091596-90091615 | Msa0386300:intron | 50.0% | |
| !! | CCGTTGCTAAAGAGTTGGTG+AGG | - | chr3_1:90091601-90091620 | Msa0386300:intron | 50.0% |
| CTGCTGCAGACTTGACTATC+AGG | - | chr3_1:90091783-90091802 | Msa0386300:CDS | 50.0% | |
| TGCACCTCTTACATATGGCC+TGG | + | chr3_1:90091809-90091828 | None:intergenic | 50.0% | |
| CTTGGCAGTAAGACGCCTAA+AGG | + | chr3_1:90091836-90091855 | None:intergenic | 50.0% | |
| GTCACCCCACAAACTAGAAG+TGG | + | chr3_1:90091911-90091930 | None:intergenic | 50.0% | |
| GTGGGGTGACTCAAAAAAGG+TGG | - | chr3_1:90091921-90091940 | Msa0386300:CDS | 50.0% | |
| !! | GAACCTCGGTACCCACTTTT+TGG | - | chr3_1:90092040-90092059 | Msa0386300:CDS | 50.0% |
| ! | TGGATATGGGTTGCCACTTC+AGG | - | chr3_1:90092087-90092106 | Msa0386300:CDS | 50.0% |
| !! | CTTTCAGGTTGTCTTGCCAG+AGG | - | chr3_1:90092515-90092534 | Msa0386300:intron | 50.0% |
| CCGCACCACTACCACTCTTA+AGG | - | chr3_1:90090515-90090534 | Msa0386300:intron | 55.0% | |
| GTGTCGCAGGTAGAGAATGC+AGG | - | chr3_1:90091069-90091088 | Msa0386300:CDS | 55.0% | |
| GCAGACTTGACTATCAGGCC+AGG | - | chr3_1:90091788-90091807 | Msa0386300:CDS | 55.0% | |
| CAGGCCAGGCCATATGTAAG+AGG | - | chr3_1:90091802-90091821 | Msa0386300:CDS | 55.0% | |
| ! | ATGAGCTCTTGGTGGCAGCT+TGG | + | chr3_1:90091854-90091873 | None:intergenic | 55.0% |
| ! | CCACCAAAAAGTGGGTACCG+AGG | + | chr3_1:90092046-90092065 | None:intergenic | 55.0% |
| !!! | CCTCGGTACCCACTTTTTGG+TGG | - | chr3_1:90092043-90092062 | Msa0386300:CDS | 55.0% |
| !!! | GGTACCCACTTTTTGGTGGC+TGG | - | chr3_1:90092047-90092066 | Msa0386300:CDS | 55.0% |
| TGCCGGTGCTTGCAACTTTC+AGG | - | chr3_1:90092500-90092519 | Msa0386300:intron | 55.0% | |
| CCGCACCACTACCACTCTTA+AGG | - | chr3_1:90090515-90090534 | Msa0386300:intron | 55.0% | |
| GTGTCGCAGGTAGAGAATGC+AGG | - | chr3_1:90091069-90091088 | Msa0386300:CDS | 55.0% | |
| GCAGACTTGACTATCAGGCC+AGG | - | chr3_1:90091788-90091807 | Msa0386300:CDS | 55.0% | |
| CAGGCCAGGCCATATGTAAG+AGG | - | chr3_1:90091802-90091821 | Msa0386300:CDS | 55.0% | |
| ! | ATGAGCTCTTGGTGGCAGCT+TGG | + | chr3_1:90091854-90091873 | None:intergenic | 55.0% |
| ! | CCACCAAAAAGTGGGTACCG+AGG | + | chr3_1:90092046-90092065 | None:intergenic | 55.0% |
| !!! | CCTCGGTACCCACTTTTTGG+TGG | - | chr3_1:90092043-90092062 | Msa0386300:CDS | 55.0% |
| !!! | GGTACCCACTTTTTGGTGGC+TGG | - | chr3_1:90092047-90092066 | Msa0386300:CDS | 55.0% |
| TGCCGGTGCTTGCAACTTTC+AGG | - | chr3_1:90092500-90092519 | Msa0386300:intron | 55.0% | |
| TCGCCCTTCCCAAGGCCTTT+AGG | + | chr3_1:90091282-90091301 | None:intergenic | 60.0% | |
| CATGGCGGTGCTCAGAGCAA+AGG | - | chr3_1:90091681-90091700 | Msa0386300:CDS | 60.0% | |
| TCGCCCTTCCCAAGGCCTTT+AGG | + | chr3_1:90091282-90091301 | None:intergenic | 60.0% | |
| CATGGCGGTGCTCAGAGCAA+AGG | - | chr3_1:90091681-90091700 | Msa0386300:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 90090430 | 90092777 | 90090430 | ID=Msa0386300;Name=Msa0386300 |
| chr3_1 | mRNA | 90090430 | 90092777 | 90090430 | ID=Msa0386300-mRNA-1;Parent=Msa0386300;Name=Msa0386300-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|0.77|0.62|0.66|9|0|375 |
| chr3_1 | exon | 90092772 | 90092777 | 90092772 | ID=Msa0386300-mRNA-1:exon:24880;Parent=Msa0386300-mRNA-1 |
| chr3_1 | exon | 90092671 | 90092715 | 90092671 | ID=Msa0386300-mRNA-1:exon:24879;Parent=Msa0386300-mRNA-1 |
| chr3_1 | exon | 90091904 | 90092129 | 90091904 | ID=Msa0386300-mRNA-1:exon:24878;Parent=Msa0386300-mRNA-1 |
| chr3_1 | exon | 90091638 | 90091879 | 90091638 | ID=Msa0386300-mRNA-1:exon:24877;Parent=Msa0386300-mRNA-1 |
| chr3_1 | exon | 90091492 | 90091613 | 90091492 | ID=Msa0386300-mRNA-1:exon:24876;Parent=Msa0386300-mRNA-1 |
| chr3_1 | exon | 90091268 | 90091415 | 90091268 | ID=Msa0386300-mRNA-1:exon:24875;Parent=Msa0386300-mRNA-1 |
| chr3_1 | exon | 90091006 | 90091182 | 90091006 | ID=Msa0386300-mRNA-1:exon:24874;Parent=Msa0386300-mRNA-1 |
| chr3_1 | exon | 90090617 | 90090685 | 90090617 | ID=Msa0386300-mRNA-1:exon:24873;Parent=Msa0386300-mRNA-1 |
| chr3_1 | exon | 90090430 | 90090519 | 90090430 | ID=Msa0386300-mRNA-1:exon:24872;Parent=Msa0386300-mRNA-1 |
| chr3_1 | CDS | 90092772 | 90092777 | 90092772 | ID=Msa0386300-mRNA-1:cds;Parent=Msa0386300-mRNA-1 |
| chr3_1 | CDS | 90092671 | 90092715 | 90092671 | ID=Msa0386300-mRNA-1:cds;Parent=Msa0386300-mRNA-1 |
| chr3_1 | CDS | 90091904 | 90092129 | 90091904 | ID=Msa0386300-mRNA-1:cds;Parent=Msa0386300-mRNA-1 |
| chr3_1 | CDS | 90091638 | 90091879 | 90091638 | ID=Msa0386300-mRNA-1:cds;Parent=Msa0386300-mRNA-1 |
| chr3_1 | CDS | 90091492 | 90091613 | 90091492 | ID=Msa0386300-mRNA-1:cds;Parent=Msa0386300-mRNA-1 |
| chr3_1 | CDS | 90091268 | 90091415 | 90091268 | ID=Msa0386300-mRNA-1:cds;Parent=Msa0386300-mRNA-1 |
| chr3_1 | CDS | 90091006 | 90091182 | 90091006 | ID=Msa0386300-mRNA-1:cds;Parent=Msa0386300-mRNA-1 |
| chr3_1 | CDS | 90090617 | 90090685 | 90090617 | ID=Msa0386300-mRNA-1:cds;Parent=Msa0386300-mRNA-1 |
| chr3_1 | CDS | 90090430 | 90090519 | 90090430 | ID=Msa0386300-mRNA-1:cds;Parent=Msa0386300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
