AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0477560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0477560 MtrunA17_Chr3g0139471 98.460 844 9 1 1 840 1 844 0.0 1713
Msa0477560 MtrunA17_Chr4g0038901 33.520 713 407 16 18 718 12 669 4.94e-107 350
Msa0477560 MtrunA17_Chr5g0435291 26.415 212 142 2 42 253 46 243 3.77e-17 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0477560 AT5G11490.1 80.166 842 164 3 1 840 1 841 0.0 1397
Msa0477560 AT5G11490.2 80.215 839 163 3 1 837 1 838 0.0 1391
Msa0477560 AT5G11490.3 79.847 784 156 2 56 837 1 784 0.0 1304
Msa0477560 AT4G23460.1 36.093 604 362 12 18 616 12 596 3.85e-108 353
Msa0477560 AT4G11380.1 35.285 615 372 11 18 627 12 605 1.01e-105 347
Msa0477560 AT4G11380.2 35.932 590 359 10 43 627 52 627 4.41e-105 345
Msa0477560 AT4G23460.2 34.893 513 317 11 109 616 2 502 2.89e-83 284
Msa0477560 AT3G55480.2 30.556 144 98 1 45 188 49 190 2.13e-13 75.1
Msa0477560 AT3G55480.2 23.721 430 271 17 275 671 351 756 4.43e-13 73.9
Msa0477560 AT3G55480.1 23.721 430 271 17 275 671 223 628 2.87e-13 74.3

Find 240 sgRNAs with CRISPR-Local

Find 644 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCGGCTTCTGCAGTTTC+TGG 0.097421 3_3:+81799410 Msa0477560:CDS
CAATCAGCTTTGTCCAAATT+TGG 0.125872 3_3:+81803421 Msa0477560:CDS
GAGTATTTGGTTGGGCCTTT+AGG 0.153079 3_3:+81795213 Msa0477560:CDS
TGTCTGCTTTACAAGAAATT+TGG 0.157651 3_3:+81796943 Msa0477560:CDS
AGTATGCACCTTTAAGTTTC+AGG 0.168431 3_3:-81803449 None:intergenic
TGGTTTGCCCTGAAACTTAA+AGG 0.191883 3_3:+81803441 Msa0477560:exon
GTTTCAGGGCAAACCAAATT+TGG 0.200113 3_3:-81803434 None:intergenic
ATCAAATGCTTCAACGTTTC+TGG 0.203616 3_3:-81795339 None:intergenic
GATTGCGCCGCGATTAAATT+TGG 0.205518 3_3:+81803774 Msa0477560:three_prime_UTR
AGTCGACAATAATGAAATTT+TGG 0.209614 3_3:+81803484 Msa0477560:three_prime_UTR
TGGAAAGTCTGGTTGAAAAT+TGG 0.212595 3_3:+81799796 Msa0477560:CDS
TTGATGTTGAAATGTGAATT+TGG 0.220256 3_3:+81803804 Msa0477560:three_prime_UTR
CTGCCTTAGCCTTAGGTTCT+TGG 0.226571 3_3:-81799716 None:intergenic
CCAGGATCCAGTACAGCTTT+TGG 0.231595 3_3:-81802752 None:intergenic
TATAATGCTCCTTCCTATAA+TGG 0.233272 3_3:+81802575 Msa0477560:CDS
CCTGCACTTGACTTTATCTA+TGG 0.262839 3_3:+81797667 Msa0477560:CDS
AGTATTTGGTTGGGCCTTTA+GGG 0.273406 3_3:+81795214 Msa0477560:CDS
TTCACAACCGCTTGCAGATT+TGG 0.280848 3_3:+81802616 Msa0477560:CDS
TTGGTTGGGCCTTTAGGGTC+AGG 0.291482 3_3:+81795219 Msa0477560:CDS
CTCTGAGGTGGTTGACTCTA+AGG 0.294624 3_3:-81796967 None:intergenic
ATTATAGGAAGGAGCATTAT+AGG 0.298629 3_3:-81802573 None:intergenic
CGAATTGATTCCCTTGCAAT+TGG 0.305678 3_3:-81799339 None:intergenic
GTTTGCTACGTGCAGCATTA+AGG 0.317331 3_3:+81797493 Msa0477560:intron
AATACTGAAACTGCTTGTTT+TGG 0.327010 3_3:-81801114 None:intergenic
CATATGATGGCTCGTTATAC+TGG 0.328980 3_3:-81799057 None:intergenic
CAAACCTCTGATAAGGATAT+TGG 0.329700 3_3:-81802803 None:intergenic
GGCGAACTTGGTGGAGTATT+TGG 0.333179 3_3:+81795200 Msa0477560:CDS
CCCAGTGCTTTCTGAGTCTC+GGG 0.337763 3_3:-81800848 None:intergenic
ATTGATGTTTCGTCTCTCTT+TGG 0.342308 3_3:+81794988 Msa0477560:CDS
TAGAAGCCTGTAATAAAATA+AGG 0.343419 3_3:-81801052 None:intergenic
AAAGATGATGTGAGAGATAC+TGG 0.345708 3_3:+81802536 Msa0477560:CDS
CAAGATTGTATTGCTGTTGT+AGG 0.357677 3_3:+81799672 Msa0477560:CDS
TAAAGAAATGGAGATAGATA+TGG 0.360957 3_3:+81803525 Msa0477560:three_prime_UTR
TTACAGCTACGGCAGCTTGC+TGG 0.364785 3_3:+81794892 Msa0477560:CDS
GGAAAGTCTGGTTGAAAATT+GGG 0.365049 3_3:+81799797 Msa0477560:CDS
TCTTCATCTTCCATCCTTGT+TGG 0.365176 3_3:+81794307 Msa0477560:five_prime_UTR
TGAAGGGGCAGACCCATTAT+AGG 0.369778 3_3:-81802588 None:intergenic
GCCTTTAGGGTCAGGGTTGA+AGG 0.371889 3_3:+81795227 Msa0477560:CDS
TCCCAGTGCTTTCTGAGTCT+CGG 0.372039 3_3:-81800849 None:intergenic
AGAATTGCATAAGATTGTTC+CGG 0.387819 3_3:-81798965 None:intergenic
CAAATTTGGACAAAGCTGAT+TGG 0.388207 3_3:-81803420 None:intergenic
CAATTGCAAGGGAATCAATT+CGG 0.388565 3_3:+81799340 Msa0477560:CDS
CAAGTCACAGATTAAAATAA+AGG 0.389674 3_3:+81803357 Msa0477560:CDS
TGATCCGAGGACTGGCATTA+AGG 0.389716 3_3:+81795157 Msa0477560:CDS
GCTTGCTGGGAGTCGAGCTC+CGG 0.391372 3_3:+81794906 Msa0477560:CDS
AGTCGTAGAAAACATGAGTC+TGG 0.394316 3_3:+81803677 Msa0477560:three_prime_UTR
CCTTCGCCGTCGCAACCGTC+CGG 0.396107 3_3:+81794433 Msa0477560:CDS
TTCAGAAGGTAATAAACAAT+TGG 0.400938 3_3:-81797026 None:intergenic
CTGGGAGCTGCACTGGCCGC+TGG 0.402711 3_3:+81800866 Msa0477560:CDS
TTCTTACATGTTCACTGATA+AGG 0.403515 3_3:+81802382 Msa0477560:CDS
AACTTGGTGGAGTATTTGGT+TGG 0.409463 3_3:+81795204 Msa0477560:CDS
TAGTCCGAGGAAAATATATA+TGG 0.418519 3_3:-81799019 None:intergenic
ATGAGAGCTGCCTTAGCCTT+AGG 0.418866 3_3:-81799723 None:intergenic
CTGGCACATTTCAGCAGAAA+TGG 0.420622 3_3:+81802771 Msa0477560:CDS
GAAAGTAACACCTATGAGAT+AGG 0.421261 3_3:+81799121 Msa0477560:CDS
TCAAAGGGATTGTAAGGATC+AGG 0.422298 3_3:+81795128 Msa0477560:CDS
CGATTAGATTGCGGTGGTGC+AGG 0.423507 3_3:-81794406 None:intergenic
GATTGCAGGATGTTCATGAT+AGG 0.426072 3_3:+81801028 Msa0477560:intron
TTGTTTATTACCTTCTGAAT+CGG 0.426616 3_3:+81797030 Msa0477560:CDS
GAAAGCACTGGGAGCTGCAC+TGG 0.427199 3_3:+81800859 Msa0477560:CDS
ATAATGCTCCTTCCTATAAT+GGG 0.428702 3_3:+81802576 Msa0477560:CDS
GTCAGGACGGTGGCAGTAAT+CGG 0.429251 3_3:+81795264 Msa0477560:CDS
CATGCTGTAGTCTATCTTCA+AGG 0.433221 3_3:-81797607 None:intergenic
CTATGTTACGTCTGAAGCTC+TGG 0.434441 3_3:+81799446 Msa0477560:CDS
GTATGCACCTTTAAGTTTCA+GGG 0.435297 3_3:-81803448 None:intergenic
GGCAGCTCTCATATGGATGC+TGG 0.436064 3_3:+81799734 Msa0477560:CDS
GTGATATCAAACATGACTAT+AGG 0.444966 3_3:+81794964 Msa0477560:CDS
TGGTTGGGCCTTTAGGGTCA+GGG 0.446084 3_3:+81795220 Msa0477560:CDS
CCTCAACCCAAAAGCTGTAC+TGG 0.447071 3_3:+81802745 Msa0477560:CDS
AGAATGCCTGTGACGAGCTT+TGG 0.448400 3_3:-81803387 None:intergenic
AGGCTAAGGCAGCTCTCATA+TGG 0.449590 3_3:+81799727 Msa0477560:CDS
GCAGTTTCTGGAGATGGAAA+AGG 0.450968 3_3:+81799422 Msa0477560:CDS
CAAGCGATTATTGTGTTCTA+CGG 0.451804 3_3:+81803747 Msa0477560:three_prime_UTR
GGAAGATGAAGATCGATAGT+TGG 0.452818 3_3:-81794296 None:intergenic
TGCATCATTAGATATAGAAA+AGG 0.453336 3_3:-81803829 None:intergenic
CTGTCTATTAGTGCGGAATC+CGG 0.457717 3_3:+81802446 Msa0477560:CDS
TCCGTATGTCTTGGAAAGTC+TGG 0.465126 3_3:+81799785 Msa0477560:CDS
TACAGCTACGGCAGCTTGCT+GGG 0.465832 3_3:+81794893 Msa0477560:CDS
TTGACTTGCAAACGCTCCTC+GGG 0.466257 3_3:-81794365 None:intergenic
TTCGTCTCTCTTTGGTGAGA+TGG 0.466707 3_3:+81794996 Msa0477560:CDS
CGCAGGAACAACAGAATCTC+CGG 0.469614 3_3:-81802465 None:intergenic
TGCATTGTTATACACTGATC+TGG 0.469741 3_3:-81803580 None:intergenic
TTCAAAGCAAACCTCTGATA+AGG 0.470543 3_3:-81802810 None:intergenic
AGGGAATCAATTCGGGCTGT+TGG 0.471812 3_3:+81799348 Msa0477560:CDS
TCAAGTGAGCTCAGGAAGTC+CGG 0.472287 3_3:+81798946 Msa0477560:CDS
CAATGCTTGGCTAGTCGTGC+TGG 0.472618 3_3:-81802651 None:intergenic
CTTCGCCGTCGCAACCGTCC+GGG 0.475178 3_3:+81794434 Msa0477560:CDS
ACTTGGTGGAGTATTTGGTT+GGG 0.475411 3_3:+81795205 Msa0477560:CDS
TTCTAAGAAAATATCCTCAA+TGG 0.478818 3_3:+81799646 Msa0477560:CDS
GAATTGATTCCCTTGCAATT+GGG 0.478912 3_3:-81799338 None:intergenic
TAGCATAGTTTCCAACATAC+AGG 0.481690 3_3:-81795065 None:intergenic
ATCTTAAACAGATCTTGTGC+TGG 0.482284 3_3:+81794089 None:intergenic
CTCTTAACTCAAGTGAGCTC+AGG 0.486123 3_3:+81798938 Msa0477560:CDS
GCTTCTGCAGTTTCTGGAGA+TGG 0.486335 3_3:+81799416 Msa0477560:CDS
AACTTCACTGCTCTGAGTAT+CGG 0.486490 3_3:-81801139 None:intergenic
CATTAAGGAATTTAGTGAAT+GGG 0.486684 3_3:+81797508 Msa0477560:CDS
TATTATTACATATGCAGATA+CGG 0.488298 3_3:-81794175 None:intergenic
AAACTATGCTAAGGTTAATC+CGG 0.489948 3_3:+81795077 Msa0477560:CDS
CATCTAATGAATCACGATGT+TGG 0.490830 3_3:-81803648 None:intergenic
GGTTTGAATATATAAAGAAA+TGG 0.490832 3_3:+81803513 Msa0477560:three_prime_UTR
TTCACTTCGAGTGGCGAACT+TGG 0.491152 3_3:+81795188 Msa0477560:CDS
TCAATACAGTGCATTGCATC+CGG 0.492293 3_3:+81803238 Msa0477560:CDS
CACCTCAGAGGAAGCAGCTA+GGG 0.493233 3_3:+81796980 Msa0477560:CDS
AAGTCAACTTCCAGTGGCTA+TGG 0.495420 3_3:+81794381 Msa0477560:exon
CTTGCTGGGAGTCGAGCTCC+GGG 0.495428 3_3:+81794907 Msa0477560:CDS
TTTGTCTGTTGTATACCAAA+AGG 0.496811 3_3:+81801191 Msa0477560:CDS
TCTAAGCCACCTGCATCTCT+TGG 0.497035 3_3:+81798985 Msa0477560:CDS
AATATTTCACTGTTATCTGA+TGG 0.500382 3_3:-81797569 None:intergenic
GAGTTACTTACCTATCTCAT+AGG 0.500850 3_3:-81799131 None:intergenic
GTCAATGATGCAATTGCAAG+AGG 0.504606 3_3:-81803178 None:intergenic
GCATTAAGGAATTTAGTGAA+TGG 0.506177 3_3:+81797507 Msa0477560:intron
CCAAAAGCTGTACTGGATCC+TGG 0.506654 3_3:+81802752 Msa0477560:CDS
GCAGCTCTCATATGGATGCT+GGG 0.507243 3_3:+81799735 Msa0477560:CDS
GTTGACTTGCAAACGCTCCT+CGG 0.507820 3_3:-81794366 None:intergenic
AAAGAAATGGAGATAGATAT+GGG 0.512122 3_3:+81803526 Msa0477560:three_prime_UTR
AAGATTGTATTGCTGTTGTA+GGG 0.514619 3_3:+81799673 Msa0477560:CDS
ACTTCGAGTGGCGAACTTGG+TGG 0.516354 3_3:+81795191 Msa0477560:CDS
AATTGCAAGGGAATCAATTC+GGG 0.518278 3_3:+81799341 Msa0477560:CDS
AATGAATCACGATGTTGGAT+TGG 0.521399 3_3:-81803643 None:intergenic
TATGGCTGATGTACATCAGC+AGG 0.521975 3_3:+81797685 Msa0477560:CDS
ATCGTCAAAAGAGCAAGATC+CGG 0.522124 3_3:-81795096 None:intergenic
GGTGCAGGAGCCATAGCCAC+TGG 0.522250 3_3:-81794391 None:intergenic
AGATCAGTGTATAACAATGC+AGG 0.522278 3_3:+81803582 Msa0477560:three_prime_UTR
TGCAAATGGTGCTGTTGTCT+TGG 0.522927 3_3:+81797628 Msa0477560:CDS
GATCATCAATTGCCAATGCT+TGG 0.526886 3_3:-81802664 None:intergenic
AGAACTTGAAATTAGGAGAC+TGG 0.528548 3_3:-81803264 None:intergenic
CCCGAGACTCAGAAAGCACT+GGG 0.529321 3_3:+81800848 Msa0477560:CDS
TCCTTCAACCCTGACCCTAA+AGG 0.529512 3_3:-81795228 None:intergenic
GATAGACTACAGCATGCAAA+TGG 0.530107 3_3:+81797614 Msa0477560:CDS
AGGATAATAATAGTTATGTC+AGG 0.535717 3_3:+81795247 Msa0477560:CDS
CCCCGAGACTCAGAAAGCAC+TGG 0.536714 3_3:+81800847 Msa0477560:CDS
GATCTCACTTTCTTCAAAGA+CGG 0.537593 3_3:+81794333 Msa0477560:five_prime_UTR
TGTTGTTCCTGCGCAGAGAG+TGG 0.538852 3_3:+81802475 Msa0477560:CDS
ATTGCAGGATGTTCATGATA+GGG 0.541499 3_3:+81801029 Msa0477560:intron
AACTCCTTAATGCCAGTCCT+CGG 0.542152 3_3:-81795161 None:intergenic
CAACAATGTCCAAGAACCTA+AGG 0.542710 3_3:+81799707 Msa0477560:CDS
CATTTCTGCTGAAATGTGCC+AGG 0.542817 3_3:-81802770 None:intergenic
CTCTTAGAGTCATCAGTACC+CGG 0.546509 3_3:-81794925 None:intergenic
CCACCTCAGAGGAAGCAGCT+AGG 0.546816 3_3:+81796979 Msa0477560:CDS
TCTTAAACAGATCTTGTGCT+GGG 0.547199 3_3:+81794090 None:intergenic
GGATCCGATGATCCGAGGAC+TGG 0.547606 3_3:+81795149 Msa0477560:CDS
TGATGACCAAAGCTCGTCAC+AGG 0.548105 3_3:+81803381 Msa0477560:CDS
AAAATGTGTTACCTGTATGT+TGG 0.548280 3_3:+81795054 Msa0477560:CDS
AATGCCAGTCCTCGGATCAT+CGG 0.548429 3_3:-81795153 None:intergenic
GCGGTTGTGAAGCTGCTGAA+GGG 0.548854 3_3:-81802604 None:intergenic
CTGATCTAAAATTACAGCTA+CGG 0.550000 3_3:+81794881 Msa0477560:CDS
CAATCCTTACCTGAGTATCC+TGG 0.550303 3_3:-81795371 None:intergenic
ACCAGACTTTCCAAGACATA+CGG 0.552347 3_3:-81799786 None:intergenic
ACAATGTCTTGTGATGGAAT+TGG 0.555303 3_3:+81797532 Msa0477560:CDS
CCAGTGCTTTCTGAGTCTCG+GGG 0.555690 3_3:-81800847 None:intergenic
GCATCATTAGATATAGAAAA+GGG 0.556114 3_3:-81803828 None:intergenic
ATGTGCCGTAGGAGTGCATT+GGG 0.556487 3_3:-81803205 None:intergenic
GTCGTAGAAAACATGAGTCT+GGG 0.557014 3_3:+81803678 Msa0477560:three_prime_UTR
CTGAAAACTCAAATGTCCCT+CGG 0.557020 3_3:-81802409 None:intergenic
CACGCATTACCAAGAGATGC+AGG 0.558649 3_3:-81798994 None:intergenic
TTTGCCTCCACTCTCTGCGC+AGG 0.558741 3_3:-81802482 None:intergenic
CGGGTACTGATGACTCTAAG+AGG 0.560686 3_3:+81794926 Msa0477560:CDS
GAGTTTGTGTTCACTTCGAG+TGG 0.560907 3_3:+81795179 Msa0477560:CDS
GCATTTGATGCTCAATGACC+AGG 0.563623 3_3:+81795353 Msa0477560:CDS
CCATAGATAAAGTCAAGTGC+AGG 0.564762 3_3:-81797667 None:intergenic
TTTCTATATCTAATGATGCA+AGG 0.566737 3_3:+81803832 Msa0477560:three_prime_UTR
GAAAAGATTACCGATTCAGA+AGG 0.567189 3_3:-81797040 None:intergenic
TTGGCAATTGATGATCTGCT+TGG 0.567360 3_3:+81802671 Msa0477560:CDS
AGCTCACTTGAGTTAAGAGA+GGG 0.567475 3_3:-81798934 None:intergenic
TGTCCAAGAACCTAAGGCTA+AGG 0.572102 3_3:+81799713 Msa0477560:CDS
GCTCAATGACCAGGATACTC+AGG 0.572468 3_3:+81795362 Msa0477560:CDS
CGGTTGTGAAGCTGCTGAAG+GGG 0.573044 3_3:-81802603 None:intergenic
CATGTGCCGTAGGAGTGCAT+TGG 0.574006 3_3:-81803206 None:intergenic
AGCGGTTGTGAAGCTGCTGA+AGG 0.575249 3_3:-81802605 None:intergenic
GCATGATGCTCCGTATGTCT+TGG 0.576281 3_3:+81799776 Msa0477560:CDS
GATCAGTGTATAACAATGCA+GGG 0.576540 3_3:+81803583 Msa0477560:three_prime_UTR
TTTGGGTTGAGGGTCAACGG+GGG 0.576858 3_3:-81802734 None:intergenic
CTCCCTAGCTGCTTCCTCTG+AGG 0.578498 3_3:-81796982 None:intergenic
TTATCAGTGAACATGTAAGA+AGG 0.579603 3_3:-81802380 None:intergenic
CAGCTCTCATATGGATGCTG+GGG 0.579778 3_3:+81799736 Msa0477560:CDS
GTTATCTGATGGAATGTACT+TGG 0.582108 3_3:-81797558 None:intergenic
ATGTTGACATCCCAATTGCA+AGG 0.584452 3_3:+81799328 Msa0477560:CDS
CCTAGCTGCTTCCTCTGAGG+TGG 0.585891 3_3:-81796979 None:intergenic
TGAGATCTAACCAACAAGGA+TGG 0.586243 3_3:-81794317 None:intergenic
ATGTCAATGCTATTGTTGAT+CGG 0.587080 3_3:+81799394 Msa0477560:CDS
GTATGTTGGAAACTATGCTA+AGG 0.594327 3_3:+81795068 Msa0477560:CDS
ACGGACCCGGACGGTTGCGA+CGG 0.594447 3_3:-81794439 None:intergenic
TAAGAGGGATCTTTACAAGA+AGG 0.601150 3_3:+81794942 Msa0477560:CDS
ATGTCTTGTGATGGAATTGG+TGG 0.601765 3_3:+81797535 Msa0477560:CDS
CAGCACGACTAGCCAAGCAT+TGG 0.603702 3_3:+81802652 Msa0477560:CDS
TTTCTTTATATATTCAAACC+AGG 0.605607 3_3:-81803510 None:intergenic
TTAAACAGATCTTGTGCTGG+GGG 0.606591 3_3:+81794092 None:intergenic
CTTAAACAGATCTTGTGCTG+GGG 0.610852 3_3:+81794091 None:intergenic
CCGGACGGTTGCGACGGCGA+AGG 0.610990 3_3:-81794433 None:intergenic
GAAATTAGGAGACTGGCCGC+CGG 0.615981 3_3:-81803257 None:intergenic
CGACGTAGTAGAAGCTGACG+TGG 0.618811 3_3:-81794149 None:intergenic
TCTGGGTTGCAAGTGTGTAG+AGG 0.619217 3_3:+81803695 Msa0477560:three_prime_UTR
ATGGGCACAATGTCTTGTGA+TGG 0.620096 3_3:+81797526 Msa0477560:CDS
ACTACCAATATCCTTATCAG+AGG 0.623846 3_3:+81802799 Msa0477560:CDS
CAGTGCTTTCTGAGTCTCGG+GGG 0.624458 3_3:-81800846 None:intergenic
AATGACTTTGCATGTGCCGT+AGG 0.625693 3_3:-81803216 None:intergenic
TGTTGACATCCCAATTGCAA+GGG 0.626270 3_3:+81799329 Msa0477560:CDS
CGACTCCCAATGCACTCCTA+CGG 0.627621 3_3:+81803200 Msa0477560:CDS
GTGAGAGATACTGGAAGCAA+TGG 0.629878 3_3:+81802545 Msa0477560:CDS
GAGCTCACTTGAGTTAAGAG+AGG 0.630893 3_3:-81798935 None:intergenic
GAAAATGCCAAATCTGCAAG+CGG 0.631748 3_3:-81802623 None:intergenic
CGCCGCGATTAAATTTGGTG+CGG 0.631903 3_3:+81803779 Msa0477560:three_prime_UTR
GCTTCTACAACACAATGTAT+CGG 0.632864 3_3:+81801068 Msa0477560:CDS
GGGTACTGATGACTCTAAGA+GGG 0.633805 3_3:+81794927 Msa0477560:CDS
GAGAGTGGAGGCAAATGACA+AGG 0.634383 3_3:+81802490 Msa0477560:CDS
ATCTGCATCAATACACGTGG+AGG 0.639042 3_3:-81795313 None:intergenic
GGGGCAGACCCATTATAGGA+AGG 0.639597 3_3:-81802584 None:intergenic
AAGACGGCGCGAATTTCCCG+AGG 0.640158 3_3:+81794349 Msa0477560:five_prime_UTR
ATACAATCTTGACTCCATTG+AGG 0.643764 3_3:-81799660 None:intergenic
ATAGAAGTGTTTGTAGTCCG+AGG 0.645673 3_3:-81799032 None:intergenic
ATCAGTGTATAACAATGCAG+GGG 0.646791 3_3:+81803584 Msa0477560:three_prime_UTR
TTCCGCACCAAATTTAATCG+CGG 0.646800 3_3:-81803781 None:intergenic
TGTTCCTGCGCAGAGAGTGG+AGG 0.648267 3_3:+81802478 Msa0477560:CDS
GATCAGGATCCGATGATCCG+AGG 0.649993 3_3:+81795144 Msa0477560:CDS
TCAATGATGCAATTGCAAGA+GGG 0.655935 3_3:-81803177 None:intergenic
GGAGATCGATTAGATTGCGG+TGG 0.656896 3_3:-81794412 None:intergenic
AGTGAGGGAACGGACCCGGA+CGG 0.658380 3_3:-81794448 None:intergenic
GTGAAAATCAGCAAGACCAG+CGG 0.660650 3_3:-81800882 None:intergenic
TAATAATAGTTATGTCAGGA+CGG 0.660766 3_3:+81795251 Msa0477560:CDS
TGTATCGGTGGCTGAGAGTG+TGG 0.662667 3_3:+81801083 Msa0477560:CDS
TGGCAATCTGTCTATTAGTG+CGG 0.662854 3_3:+81802439 Msa0477560:CDS
GTTTGCAAGTCAACTTCCAG+TGG 0.667172 3_3:+81794375 Msa0477560:five_prime_UTR
TCTACAACACAATGTATCGG+TGG 0.672727 3_3:+81801071 Msa0477560:CDS
AGTGCTTTCTGAGTCTCGGG+GGG 0.673467 3_3:-81800845 None:intergenic
TCTGGTTGAAAATTGGGACG+AGG 0.674693 3_3:+81799803 Msa0477560:CDS
ATACAGTGCATTGCATCCGG+CGG 0.681832 3_3:+81803241 Msa0477560:CDS
AAAATCTGCATCAATACACG+TGG 0.682353 3_3:-81795316 None:intergenic
GGACGAGGAGCATTCTGCCG+AGG 0.683462 3_3:+81799818 Msa0477560:CDS
CTTAGAGTCAACCACCTCAG+AGG 0.685984 3_3:+81796968 Msa0477560:CDS
GAAGGAGATCGATTAGATTG+CGG 0.687354 3_3:-81794415 None:intergenic
CTAATGATGCAAGGTGCCTG+CGG 0.693479 3_3:+81803841 Msa0477560:three_prime_UTR
TCAGTGTATAACAATGCAGG+GGG 0.695855 3_3:+81803585 Msa0477560:three_prime_UTR
AGCTCTCATATGGATGCTGG+GGG 0.703952 3_3:+81799737 Msa0477560:CDS
AAAGTGAGATCTAACCAACA+AGG 0.705125 3_3:-81794321 None:intergenic
GGATCTGCTTCTAAGTACCA+CGG 0.710539 3_3:+81802511 Msa0477560:CDS
TAATAGTTATGTCAGGACGG+TGG 0.728993 3_3:+81795254 Msa0477560:CDS
GCATTACCAAGAGATGCAGG+TGG 0.740701 3_3:-81798991 None:intergenic
TCACTGATAAGGAACACCGA+GGG 0.741366 3_3:+81802393 Msa0477560:CDS
GCTCACTTGAGTTAAGAGAG+GGG 0.755910 3_3:-81798933 None:intergenic
TTCACTGATAAGGAACACCG+AGG 0.759479 3_3:+81802392 Msa0477560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTGTATCTTTTTTTTA+CGG - chr3_3:81796600-81796619 None:intergenic 10.0%
!!! TATGACAATATTTTATATTT+AGG + chr3_3:81801507-81801526 Msa0477560:intron 10.0%
!!! TTACATTATTTATAGTTTTT+CGG + chr3_3:81801636-81801655 Msa0477560:intron 10.0%
!! AAAAATATCTAATTTGAAAA+TGG - chr3_3:81801756-81801775 None:intergenic 10.0%
!! TAAAAATGAATGTAAATTGA+GGG + chr3_3:81795557-81795576 Msa0477560:intron 15.0%
!!! TTTTTTTCCTTAACATTATT+TGG + chr3_3:81796432-81796451 Msa0477560:intron 15.0%
!!! ATATTGTATCTTTTTTTTAC+GGG - chr3_3:81796599-81796618 None:intergenic 15.0%
!!! GTGCAAAATAATTTTAAAAT+GGG - chr3_3:81797166-81797185 None:intergenic 15.0%
!! AATTATAAATCAGTTATTCT+AGG + chr3_3:81797271-81797290 Msa0477560:intron 15.0%
!! ATAAACAAAATAAGCAATTA+AGG - chr3_3:81797367-81797386 None:intergenic 15.0%
!!! TTATTGATAACTTTTTCATT+TGG + chr3_3:81798261-81798280 Msa0477560:intron 15.0%
!!! TTAAATCTTGTTTTTGTTTA+TGG + chr3_3:81798300-81798319 Msa0477560:intron 15.0%
!!! AATTTTAATGTATAAGTGTA+TGG - chr3_3:81798608-81798627 None:intergenic 15.0%
!! TATATCATATGTGAATATTA+GGG + chr3_3:81798663-81798682 Msa0477560:intron 15.0%
!! ATTCATATGATTTCAATTAA+CGG - chr3_3:81799951-81799970 None:intergenic 15.0%
!! AAAAAAAAAAAAAGATTTGG+TGG - chr3_3:81800703-81800722 None:intergenic 15.0%
!! ACAAAACAAAACAAAAAAAT+TGG - chr3_3:81801404-81801423 None:intergenic 15.0%
!!! TGAACCTTTTTATTTATTTT+TGG + chr3_3:81802046-81802065 Msa0477560:intron 15.0%
!! TTCACCAAAAATAAATAAAA+AGG - chr3_3:81802053-81802072 None:intergenic 15.0%
!!! AATAATTATTTAGAATGTCA+AGG - chr3_3:81802111-81802130 None:intergenic 15.0%
!! AAATATCAATAATAAAAGCA+AGG - chr3_3:81802264-81802283 None:intergenic 15.0%
!! TAAATTTAATAATATGATGC+AGG + chr3_3:81803141-81803160 Msa0477560:intron 15.0%
!! TATTATTACATATGCAGATA+CGG - chr3_3:81794178-81794197 None:intergenic 20.0%
!! TATGATCTACAAATTCAATT+TGG + chr3_3:81794501-81794520 Msa0477560:intron 20.0%
!! GATAATTGTGATATCAATAA+TGG - chr3_3:81794763-81794782 None:intergenic 20.0%
!! ACAATTATCTTATGTTAATG+TGG + chr3_3:81794774-81794793 Msa0477560:intron 20.0%
!!! TTTATCATATGTTGATGATT+AGG - chr3_3:81795411-81795430 None:intergenic 20.0%
!! GTCTAATGATTTATGTAAAT+CGG + chr3_3:81795498-81795517 Msa0477560:intron 20.0%
!! GTAAAAATGAATGTAAATTG+AGG + chr3_3:81795556-81795575 Msa0477560:intron 20.0%
!! ATTTGTAAAAAAGTTAGTAC+TGG + chr3_3:81795776-81795795 Msa0477560:intron 20.0%
!!! AAAGAGATAATATTTTATGC+TGG + chr3_3:81795857-81795876 Msa0477560:intron 20.0%
!!! ATTTTATGCTGGAAAATAAA+AGG + chr3_3:81795868-81795887 Msa0477560:intron 20.0%
!!! TTTTATGCTGGAAAATAAAA+GGG + chr3_3:81795869-81795888 Msa0477560:intron 20.0%
!!! AAAAGGGTATTTTGATATTT+TGG + chr3_3:81795885-81795904 Msa0477560:intron 20.0%
!! AATGTATAGTTAACGTAAAT+CGG + chr3_3:81796153-81796172 Msa0477560:intron 20.0%
!!! TGGATATTACATTTATGTTT+TGG + chr3_3:81796222-81796241 Msa0477560:intron 20.0%
!! TTGTACTCTATACTATAAAT+TGG + chr3_3:81796396-81796415 Msa0477560:intron 20.0%
!!! AAAAGGAACATTCATTTTTA+AGG - chr3_3:81796773-81796792 None:intergenic 20.0%
!!! GGTGCAAAATAATTTTAAAA+TGG - chr3_3:81797167-81797186 None:intergenic 20.0%
!!! CTAATTTTTCAACAACTTAT+TGG + chr3_3:81797462-81797481 Msa0477560:intron 20.0%
!! ATTTATCAATACAGAATCTA+CGG - chr3_3:81798162-81798181 None:intergenic 20.0%
!! AAGATTTAAAAACACAGAAA+TGG - chr3_3:81798289-81798308 None:intergenic 20.0%
!! GTATATCATATGTGAATATT+AGG + chr3_3:81798662-81798681 Msa0477560:intron 20.0%
!! TATTTAACCATATTTGCATA+AGG + chr3_3:81798746-81798765 Msa0477560:intron 20.0%
!! ATGAACATGATAGTTTAAAT+AGG - chr3_3:81798793-81798812 None:intergenic 20.0%
!!! ATGCAACTTATTTTTGTTTA+AGG + chr3_3:81798892-81798911 Msa0477560:intron 20.0%
!!! GATTTAAATTTCTGCATTTT+AGG + chr3_3:81799893-81799912 Msa0477560:intron 20.0%
!!! AATTAACGGCTTAAATTTTT+GGG - chr3_3:81799937-81799956 None:intergenic 20.0%
!! GTTAATTGAAATCATATGAA+TGG + chr3_3:81799950-81799969 Msa0477560:intron 20.0%
!!! TTTTATATTATACCTCTAAC+CGG + chr3_3:81799973-81799992 Msa0477560:intron 20.0%
!!! TATGATTTTGAAATTTGAAG+AGG + chr3_3:81800259-81800278 Msa0477560:intron 20.0%
!!! ATGATTTTGAAATTTGAAGA+GGG + chr3_3:81800260-81800279 Msa0477560:intron 20.0%
!! TTATTCTTCTACAACATTAA+AGG + chr3_3:81801574-81801593 Msa0477560:intron 20.0%
!!! ATTATTTATAGTTTTTCGGT+AGG + chr3_3:81801640-81801659 Msa0477560:intron 20.0%
!!! TTTTTTTGTAATCAAACAGA+TGG + chr3_3:81801704-81801723 Msa0477560:intron 20.0%
!! AGAATATAATATAGAAGAGA+GGG - chr3_3:81802331-81802350 None:intergenic 20.0%
!! ATAATATGACAACACATTAA+TGG + chr3_3:81802961-81802980 Msa0477560:intron 20.0%
!! TGCAATTTAAAAAATCTCTA+GGG - chr3_3:81803037-81803056 None:intergenic 20.0%
!! AAGAAAAAGAACTTGAAATT+AGG - chr3_3:81803274-81803293 None:intergenic 20.0%
!! TTTCTTTATATATTCAAACC+AGG - chr3_3:81803513-81803532 None:intergenic 20.0%
!! GGTTTGAATATATAAAGAAA+TGG + chr3_3:81803513-81803532 Msa0477560:three_prime_UTR 20.0%
!!! CTCACTTTTTTCATCAAAAA+TGG - chr3_3:81794242-81794261 None:intergenic 25.0%
! TCGTGAAAGTTAAAATTCAA+CGG - chr3_3:81794680-81794699 None:intergenic 25.0%
! ATTATCTTATGTTAATGTGG+TGG + chr3_3:81794777-81794796 Msa0477560:intron 25.0%
! CCTGGTTAAAATTAAATGTT+AGG - chr3_3:81794848-81794867 None:intergenic 25.0%
!!! CCTAACATTTAATTTTAACC+AGG + chr3_3:81794845-81794864 Msa0477560:intron 25.0%
!! TGACGATTAATTTTCTTCAA+AGG + chr3_3:81795112-81795131 Msa0477560:CDS 25.0%
!! GACGATTAATTTTCTTCAAA+GGG + chr3_3:81795113-81795132 Msa0477560:CDS 25.0%
! AGGATAATAATAGTTATGTC+AGG + chr3_3:81795247-81795266 Msa0477560:CDS 25.0%
! TAATAATAGTTATGTCAGGA+CGG + chr3_3:81795251-81795270 Msa0477560:CDS 25.0%
!!! TTTTTTACTGGAAAGAGAAA+AGG + chr3_3:81795534-81795553 Msa0477560:intron 25.0%
!!! TAGGAGCTATTACATTTTTT+TGG + chr3_3:81795591-81795610 Msa0477560:intron 25.0%
!!! AGGAGCTATTACATTTTTTT+GGG + chr3_3:81795592-81795611 Msa0477560:intron 25.0%
!!! TTTGATTTGCTAAAAAACAG+GGG - chr3_3:81796063-81796082 None:intergenic 25.0%
!!! GTTTGATTTGCTAAAAAACA+GGG - chr3_3:81796064-81796083 None:intergenic 25.0%
! GATTTACGTTAACTATACAT+TGG - chr3_3:81796154-81796173 None:intergenic 25.0%
! TAGTATAGAGTACAAATAGA+TGG - chr3_3:81796391-81796410 None:intergenic 25.0%
!!! ATATTGCTACTTTAGGATTA+AGG - chr3_3:81796571-81796590 None:intergenic 25.0%
!!! CATTTTTAAGGAACCTAAAA+AGG - chr3_3:81796761-81796780 None:intergenic 25.0%
! GCAATAGAAAGAACAAAAAA+AGG - chr3_3:81796790-81796809 None:intergenic 25.0%
!! TTGTTGTTCACATATATATC+AGG + chr3_3:81796817-81796836 Msa0477560:intron 25.0%
! TTCAGAAGGTAATAAACAAT+TGG - chr3_3:81797029-81797048 None:intergenic 25.0%
! TTGTTTATTACCTTCTGAAT+CGG + chr3_3:81797030-81797049 Msa0477560:CDS 25.0%
! TGTCAAAATGAGAAATAGAA+AGG - chr3_3:81797188-81797207 None:intergenic 25.0%
! CTGATTTATAATTGTATGCA+AGG - chr3_3:81797264-81797283 None:intergenic 25.0%
! TATTCTAGGTAATATGATTG+TGG + chr3_3:81797285-81797304 Msa0477560:intron 25.0%
! ATTCTAGGTAATATGATTGT+GGG + chr3_3:81797286-81797305 Msa0477560:intron 25.0%
! ATAAAATGTCTTTCTCATTG+TGG + chr3_3:81797395-81797414 Msa0477560:intron 25.0%
! CATTAAGGAATTTAGTGAAT+GGG + chr3_3:81797508-81797527 Msa0477560:CDS 25.0%
! AATATTTCACTGTTATCTGA+TGG - chr3_3:81797572-81797591 None:intergenic 25.0%
! ACTATGTTGTAAAGAAAAAC+AGG - chr3_3:81797755-81797774 None:intergenic 25.0%
! AACTGAAAAGTAAAGTTGTA+TGG - chr3_3:81797796-81797815 None:intergenic 25.0%
! CTACTAAAAGTAAAGTCATA+TGG - chr3_3:81797829-81797848 None:intergenic 25.0%
! CTGGTTTAGTATATTTAACT+AGG + chr3_3:81798205-81798224 Msa0477560:intron 25.0%
! GTATATTTAACTAGGATGAT+TGG + chr3_3:81798213-81798232 Msa0477560:intron 25.0%
! TAAACACTTGTATAAGTGTA+TGG - chr3_3:81798552-81798571 None:intergenic 25.0%
! ATTAAACTGTTTAACAAACG+AGG + chr3_3:81798686-81798705 Msa0477560:intron 25.0%
! TTAAACTGTTTAACAAACGA+GGG + chr3_3:81798687-81798706 Msa0477560:intron 25.0%
!! TTCAACTTTTTGACATATGA+TGG - chr3_3:81799073-81799092 None:intergenic 25.0%
! CATCAAATTGAAAAATGCAA+TGG - chr3_3:81799206-81799225 None:intergenic 25.0%
!! TGATTAATTCCCTTTCTTTT+TGG + chr3_3:81799241-81799260 Msa0477560:intron 25.0%
! TAAGCATTACCAAAAAGAAA+GGG - chr3_3:81799253-81799272 None:intergenic 25.0%
!! TTCTAAGAAAATATCCTCAA+TGG + chr3_3:81799646-81799665 Msa0477560:CDS 25.0%
! AAAAGTTATGTATACTACCT+CGG - chr3_3:81799838-81799857 None:intergenic 25.0%
! AAATTTAAATCGCAAATGTG+TGG - chr3_3:81799884-81799903 None:intergenic 25.0%
!! CAATTAACGGCTTAAATTTT+TGG - chr3_3:81799938-81799957 None:intergenic 25.0%
! TTGTCTTGTAAACTGAATTA+TGG - chr3_3:81800109-81800128 None:intergenic 25.0%
!! TGTTTTACAAGAATTTTGCT+AGG - chr3_3:81800202-81800221 None:intergenic 25.0%
! TAGAAGCCTGTAATAAAATA+AGG - chr3_3:81801055-81801074 None:intergenic 25.0%
!! TCAGTAAATTAGTTACCTTT+TGG - chr3_3:81801209-81801228 None:intergenic 25.0%
!! TTTTAAACTTGAAGCCATTT+CGG + chr3_3:81801253-81801272 Msa0477560:intron 25.0%
! TTAGTGCTTCATAGATAAAA+CGG - chr3_3:81801304-81801323 None:intergenic 25.0%
! CTTCATGTAAATTGATACAA+CGG + chr3_3:81801930-81801949 Msa0477560:intron 25.0%
! ATGAGGGAAAATATGATAAA+CGG + chr3_3:81801957-81801976 Msa0477560:intron 25.0%
! CAGAATATAATATAGAAGAG+AGG - chr3_3:81802332-81802351 None:intergenic 25.0%
!!! TTGGTTTAGATTTTTCAGTT+GGG + chr3_3:81802690-81802709 Msa0477560:CDS 25.0%
! ATCAAAATCATTAGGTGATA+TGG - chr3_3:81802907-81802926 None:intergenic 25.0%
! TGACTTGAATCAAAATCATT+AGG - chr3_3:81802915-81802934 None:intergenic 25.0%
! GTGCAATTTAAAAAATCTCT+AGG - chr3_3:81803038-81803057 None:intergenic 25.0%
!!! CCAATATACTAGACATTTTT+TGG - chr3_3:81803099-81803118 None:intergenic 25.0%
! CCAAAAAATGTCTAGTATAT+TGG + chr3_3:81803096-81803115 Msa0477560:intron 25.0%
!!! CTTTATTTTAATCTGTGACT+TGG - chr3_3:81803359-81803378 None:intergenic 25.0%
! CAAGTCACAGATTAAAATAA+AGG + chr3_3:81803357-81803376 Msa0477560:CDS 25.0%
!! AGTCGACAATAATGAAATTT+TGG + chr3_3:81803484-81803503 Msa0477560:three_prime_UTR 25.0%
!!! ATAATGAAATTTTGGAATCC+TGG + chr3_3:81803492-81803511 Msa0477560:three_prime_UTR 25.0%
! TAAAGAAATGGAGATAGATA+TGG + chr3_3:81803525-81803544 Msa0477560:three_prime_UTR 25.0%
! AAAGAAATGGAGATAGATAT+GGG + chr3_3:81803526-81803545 Msa0477560:three_prime_UTR 25.0%
! TTGATGTTGAAATGTGAATT+TGG + chr3_3:81803804-81803823 Msa0477560:three_prime_UTR 25.0%
! GCATCATTAGATATAGAAAA+GGG - chr3_3:81803831-81803850 None:intergenic 25.0%
! TGCATCATTAGATATAGAAA+AGG - chr3_3:81803832-81803851 None:intergenic 25.0%
! TTTCTATATCTAATGATGCA+AGG + chr3_3:81803832-81803851 Msa0477560:three_prime_UTR 25.0%
CATTCATATACGCAAATTCT+AGG + chr3_3:81794628-81794647 Msa0477560:intron 30.0%
AAGTTAAAATTCAACGGCAT+TGG - chr3_3:81794674-81794693 None:intergenic 30.0%
! CTGATCTAAAATTACAGCTA+CGG + chr3_3:81794881-81794900 Msa0477560:CDS 30.0%
GTGATATCAAACATGACTAT+AGG + chr3_3:81794964-81794983 Msa0477560:CDS 30.0%
AAAATGTGTTACCTGTATGT+TGG + chr3_3:81795054-81795073 Msa0477560:CDS 30.0%
AAACTATGCTAAGGTTAATC+CGG + chr3_3:81795077-81795096 Msa0477560:CDS 30.0%
! TTTTCTTCAAAGGGATTGTA+AGG + chr3_3:81795122-81795141 Msa0477560:CDS 30.0%
! TTAGACTATGTAGATTAGCT+TGG - chr3_3:81795484-81795503 None:intergenic 30.0%
AAATGAATGTAAATTGAGGG+AGG + chr3_3:81795560-81795579 Msa0477560:intron 30.0%
AGTACAAGACAAAATAGTAC+AGG + chr3_3:81795806-81795825 Msa0477560:intron 30.0%
!!! TATTTTGGTAATCTGTACTC+CGG + chr3_3:81795900-81795919 Msa0477560:intron 30.0%
! TTTGATTTAGAACAGGTCAT+GGG - chr3_3:81796008-81796027 None:intergenic 30.0%
!! CGTTTGATTTGCTAAAAAAC+AGG - chr3_3:81796065-81796084 None:intergenic 30.0%
!! TTCACAGAGTTGATGATTAA+GGG - chr3_3:81796090-81796109 None:intergenic 30.0%
AAAGGGTAAAAGTAATGTAG+TGG + chr3_3:81796202-81796221 Msa0477560:intron 30.0%
GGATCTATTCTATAAGTGAT+GGG - chr3_3:81796370-81796389 None:intergenic 30.0%
TGGATCTATTCTATAAGTGA+TGG - chr3_3:81796371-81796390 None:intergenic 30.0%
TGCTCATCCAAATAATGTTA+AGG - chr3_3:81796442-81796461 None:intergenic 30.0%
TTGTAAGCAATGCTATTATC+AGG + chr3_3:81796480-81796499 Msa0477560:intron 30.0%
!! GGCTTTAATATTGCTACTTT+AGG - chr3_3:81796578-81796597 None:intergenic 30.0%
! ACCATATCCTTTACCTTTTT+AGG + chr3_3:81796745-81796764 Msa0477560:intron 30.0%
ACCTAAAAAGGTAAAGGATA+TGG - chr3_3:81796749-81796768 None:intergenic 30.0%
TAAGGAACCTAAAAAGGTAA+AGG - chr3_3:81796755-81796774 None:intergenic 30.0%
! ATGATCTTGTTTGTTTCATC+AGG + chr3_3:81796905-81796924 Msa0477560:intron 30.0%
TGTCTGCTTTACAAGAAATT+TGG + chr3_3:81796943-81796962 Msa0477560:CDS 30.0%
TAAAGGAGTTCAATGGATAT+CGG - chr3_3:81797074-81797093 None:intergenic 30.0%
!!! TAATTTTAAAATGGGAACCC+CGG - chr3_3:81797158-81797177 None:intergenic 30.0%
!! AATATGATTGTGGGAGTATT+TGG + chr3_3:81797295-81797314 Msa0477560:intron 30.0%
GCATTAAGGAATTTAGTGAA+TGG + chr3_3:81797507-81797526 Msa0477560:intron 30.0%
TTTGTCATTAAGGTTCTGTA+AGG + chr3_3:81797878-81797897 Msa0477560:intron 30.0%
! GCTAAATTAGTTTCAACCAA+AGG - chr3_3:81797994-81798013 None:intergenic 30.0%
! TAATTTAGCTCAGTTCCTTA+AGG + chr3_3:81798005-81798024 Msa0477560:intron 30.0%
TTGTTTACTTACCATAGAAG+AGG + chr3_3:81798403-81798422 Msa0477560:intron 30.0%
TAAACTGTTTAACAAACGAG+GGG + chr3_3:81798688-81798707 Msa0477560:intron 30.0%
! TGACTGTATCTTTTCATCTT+TGG + chr3_3:81798841-81798860 Msa0477560:intron 30.0%
AGAATTGCATAAGATTGTTC+CGG - chr3_3:81798968-81798987 None:intergenic 30.0%
! TGCACCATATATATTTTCCT+CGG + chr3_3:81799015-81799034 Msa0477560:CDS 30.0%
TAGTCCGAGGAAAATATATA+TGG - chr3_3:81799022-81799041 None:intergenic 30.0%
!! CAATTTGATGTTTTGTTCAC+CGG + chr3_3:81799216-81799235 Msa0477560:intron 30.0%
AGAAAGGGAATTAATCAAAC+CGG - chr3_3:81799238-81799257 None:intergenic 30.0%
GTAAGCATTACCAAAAAGAA+AGG - chr3_3:81799254-81799273 None:intergenic 30.0%
ATGTCAATGCTATTGTTGAT+CGG + chr3_3:81799394-81799413 Msa0477560:CDS 30.0%
GTTCGTATATTAACATGAAG+CGG - chr3_3:81799530-81799549 None:intergenic 30.0%
!!! ATATTGTTTTGACCTGGTAA+TGG + chr3_3:81799568-81799587 Msa0477560:intron 30.0%
CATAAAATGAACTTTCGAAC+TGG - chr3_3:81799607-81799626 None:intergenic 30.0%
! TTCGAAAGTTCATTTTATGC+AGG + chr3_3:81799608-81799627 Msa0477560:intron 30.0%
! AAGATTGTATTGCTGTTGTA+GGG + chr3_3:81799673-81799692 Msa0477560:CDS 30.0%
!!! GCTTAAATTTTTGGGATAGT+TGG - chr3_3:81799929-81799948 None:intergenic 30.0%
AAAAAACGTTCATGCTTAAC+AGG - chr3_3:81800075-81800094 None:intergenic 30.0%
TCAGTTTACAAGACAAGATA+AGG + chr3_3:81800113-81800132 Msa0477560:intron 30.0%
! GCGATGTTCTAAATAGTTAT+TGG - chr3_3:81800153-81800172 None:intergenic 30.0%
ATTGCGTCTTATATTACAGA+GGG - chr3_3:81800368-81800387 None:intergenic 30.0%
AATTGCGTCTTATATTACAG+AGG - chr3_3:81800369-81800388 None:intergenic 30.0%
TGTAATATAAGACGCAATTG+TGG + chr3_3:81800370-81800389 Msa0477560:intron 30.0%
GAACTTAACACCTAATATCA+AGG - chr3_3:81800402-81800421 None:intergenic 30.0%
ATATTAGGTGTTAAGTTCCA+CGG + chr3_3:81800404-81800423 Msa0477560:intron 30.0%
!! ACTTACTTGCTATGCAATTT+CGG + chr3_3:81800530-81800549 Msa0477560:intron 30.0%
AGTAAATAACAACTCAAACC+TGG - chr3_3:81800907-81800926 None:intergenic 30.0%
ACAATGCGATTAGATATTTG+TGG + chr3_3:81800949-81800968 Msa0477560:intron 30.0%
!!! ATAGGGCCTTATTTTATTAC+AGG + chr3_3:81801046-81801065 Msa0477560:CDS 30.0%
! AATACTGAAACTGCTTGTTT+TGG - chr3_3:81801117-81801136 None:intergenic 30.0%
TTTGTCTGTTGTATACCAAA+AGG + chr3_3:81801191-81801210 Msa0477560:CDS 30.0%
TTTAAACTTGAAGCCATTTC+GGG + chr3_3:81801254-81801273 Msa0477560:intron 30.0%
!!! TGTTTTGATTCAACACACTT+TGG + chr3_3:81801421-81801440 Msa0477560:intron 30.0%
TCTCAGACATATGGTAATAA+TGG + chr3_3:81801449-81801468 Msa0477560:intron 30.0%
TTAAAGGATGATGATCAATG+AGG + chr3_3:81801590-81801609 Msa0477560:intron 30.0%
TAAAGGATGATGATCAATGA+GGG + chr3_3:81801591-81801610 Msa0477560:intron 30.0%
!! TATAGTTTTTCGGTAGGAAT+TGG + chr3_3:81801646-81801665 Msa0477560:intron 30.0%
TGAGGGAAAATATGATAAAC+GGG + chr3_3:81801958-81801977 Msa0477560:intron 30.0%
!! AAGTCAAGGTTATTTTACAG+GGG - chr3_3:81802011-81802030 None:intergenic 30.0%
!! GAAGTCAAGGTTATTTTACA+GGG - chr3_3:81802012-81802031 None:intergenic 30.0%
!! AGAAGTCAAGGTTATTTTAC+AGG - chr3_3:81802013-81802032 None:intergenic 30.0%
ATAATATAGAAGAGAGGGAA+GGG - chr3_3:81802326-81802345 None:intergenic 30.0%
TATAATATAGAAGAGAGGGA+AGG - chr3_3:81802327-81802346 None:intergenic 30.0%
TTATCAGTGAACATGTAAGA+AGG - chr3_3:81802383-81802402 None:intergenic 30.0%
TTCTTACATGTTCACTGATA+AGG + chr3_3:81802382-81802401 Msa0477560:CDS 30.0%
!! TTTGAGTTTTCAGATGAACT+TGG + chr3_3:81802419-81802438 Msa0477560:CDS 30.0%
!! ATTATAGGAAGGAGCATTAT+AGG - chr3_3:81802576-81802595 None:intergenic 30.0%
TATAATGCTCCTTCCTATAA+TGG + chr3_3:81802575-81802594 Msa0477560:CDS 30.0%
ATAATGCTCCTTCCTATAAT+GGG + chr3_3:81802576-81802595 Msa0477560:CDS 30.0%
!! CTTGGTTTAGATTTTTCAGT+TGG + chr3_3:81802689-81802708 Msa0477560:CDS 30.0%
!! GATCAATTTTGATGCATTGT+TGG - chr3_3:81803015-81803034 None:intergenic 30.0%
!!! TACTAGACATTTTTTGGTGT+TGG - chr3_3:81803093-81803112 None:intergenic 30.0%
!! CTAGTATATTGGTTTATCTG+TGG + chr3_3:81803107-81803126 Msa0477560:intron 30.0%
!!! TATTTTAATCTGTGACTTGG+CGG - chr3_3:81803356-81803375 None:intergenic 30.0%
AAAGTGAGATCTAACCAACA+AGG - chr3_3:81794324-81794343 None:intergenic 35.0%
GATCTCACTTTCTTCAAAGA+CGG + chr3_3:81794333-81794352 Msa0477560:five_prime_UTR 35.0%
TAAGATGAAGAGATGAGTGA+GGG - chr3_3:81794466-81794485 None:intergenic 35.0%
! GTTTGCTAAGATCCAAAAAG+CGG - chr3_3:81794559-81794578 None:intergenic 35.0%
TAAGAGGGATCTTTACAAGA+AGG + chr3_3:81794942-81794961 Msa0477560:CDS 35.0%
ATTGATGTTTCGTCTCTCTT+TGG + chr3_3:81794988-81795007 Msa0477560:CDS 35.0%
TAGCATAGTTTCCAACATAC+AGG - chr3_3:81795068-81795087 None:intergenic 35.0%
GTATGTTGGAAACTATGCTA+AGG + chr3_3:81795068-81795087 Msa0477560:CDS 35.0%
AAAATCTGCATCAATACACG+TGG - chr3_3:81795319-81795338 None:intergenic 35.0%
ATCAAATGCTTCAACGTTTC+TGG - chr3_3:81795342-81795361 None:intergenic 35.0%
! AGGTAAGGATTGTGCTTTTA+TGG + chr3_3:81795382-81795401 Msa0477560:intron 35.0%
!! GTAGATTAGCTTGGTTCTAT+AGG - chr3_3:81795475-81795494 None:intergenic 35.0%
! TATGTAAATCGGTTTCTTCG+AGG + chr3_3:81795509-81795528 Msa0477560:intron 35.0%
!!! TTCTTCGAGGAGTTTTTTAC+TGG + chr3_3:81795522-81795541 Msa0477560:intron 35.0%
GAAGTTACTTAGTTGGGAAA+TGG + chr3_3:81795631-81795650 Msa0477560:intron 35.0%
TTACTTAGTTGGGAAATGGA+GGG + chr3_3:81795635-81795654 Msa0477560:intron 35.0%
CTCGAATGTAAAATGAAGTG+TGG - chr3_3:81795686-81795705 None:intergenic 35.0%
TACATTCGAGTATAATTCCC+TGG + chr3_3:81795696-81795715 Msa0477560:intron 35.0%
AGGACAAGACAAAACTATAC+TGG + chr3_3:81795826-81795845 Msa0477560:intron 35.0%
!! TGTCTCATGGATTTTTAGAG+AGG + chr3_3:81795932-81795951 Msa0477560:intron 35.0%
!! GTCTCATGGATTTTTAGAGA+GGG + chr3_3:81795933-81795952 Msa0477560:intron 35.0%
! GTTTGATTTAGAACAGGTCA+TGG - chr3_3:81796009-81796028 None:intergenic 35.0%
! TGACCTGTTCTAAATCAAAC+AGG + chr3_3:81796009-81796028 Msa0477560:intron 35.0%
! GACCTGTTCTAAATCAAACA+GGG + chr3_3:81796010-81796029 Msa0477560:intron 35.0%
! TACCCTGTTTGATTTAGAAC+AGG - chr3_3:81796015-81796034 None:intergenic 35.0%
TAAAAAACAGGGGACTAAAC+AGG - chr3_3:81796053-81796072 None:intergenic 35.0%
!! CTTCACAGAGTTGATGATTA+AGG - chr3_3:81796091-81796110 None:intergenic 35.0%
!! TGTAGATTAGCTTGGTTCTA+GGG - chr3_3:81795476-81795495 None:intergenic 35.0%
!! ATGTAGATTAGCTTGGTTCT+AGG - chr3_3:81795477-81795496 None:intergenic 35.0%
! TTGGACTATGTAGATTAGCT+TGG - chr3_3:81796135-81796154 None:intergenic 35.0%
! GTTAACGTAAATCGGTTTCT+TGG + chr3_3:81796161-81796180 Msa0477560:intron 35.0%
!!! TTATGTTTTGGCTTGTGCTT+TGG + chr3_3:81796234-81796253 Msa0477560:intron 35.0%
!!! TATGTTTTGGCTTGTGCTTT+GGG + chr3_3:81796235-81796254 Msa0477560:intron 35.0%
!! GCTTTGGCTCTTTATTTCTT+CGG + chr3_3:81796283-81796302 Msa0477560:intron 35.0%
TTCACTTTGACAAGTGATGA+CGG - chr3_3:81796683-81796702 None:intergenic 35.0%
GATATGGTAGTTAGAGAAAG+TGG - chr3_3:81796733-81796752 None:intergenic 35.0%
ATCATGTTGTGCAGATCATT+TGG - chr3_3:81796890-81796909 None:intergenic 35.0%
!! GAAAAGATTACCGATTCAGA+AGG - chr3_3:81797043-81797062 None:intergenic 35.0%
! AGCTTTCTAAAGGAGTTCAA+TGG - chr3_3:81797081-81797100 None:intergenic 35.0%
GGAGAAAGAAGCTAATATAC+TGG - chr3_3:81797243-81797262 None:intergenic 35.0%
GAATAGTGACTTCACAAATG+TGG + chr3_3:81797324-81797343 Msa0477560:intron 35.0%
! ACAATGTCTTGTGATGGAAT+TGG + chr3_3:81797532-81797551 Msa0477560:CDS 35.0%
GTTATCTGATGGAATGTACT+TGG - chr3_3:81797561-81797580 None:intergenic 35.0%
GGGACATGTATTTGTCATTA+AGG + chr3_3:81797868-81797887 Msa0477560:intron 35.0%
ATGCTTGTGGTATTCATACA+TGG + chr3_3:81797903-81797922 Msa0477560:intron 35.0%
TTCATACATGGACACATAAC+TGG + chr3_3:81797915-81797934 Msa0477560:intron 35.0%
TCATACATGGACACATAACT+GGG + chr3_3:81797916-81797935 Msa0477560:intron 35.0%
AGTGTTAACCTTAGACTTAG+AGG + chr3_3:81797940-81797959 Msa0477560:intron 35.0%
ATGCTTGTGGTATTCATACA+TGG + chr3_3:81797903-81797922 Msa0477560:intron 35.0%
TTCATACATGGACACATAAC+TGG + chr3_3:81797915-81797934 Msa0477560:intron 35.0%
TCATACATGGACACATAACT+GGG + chr3_3:81797916-81797935 Msa0477560:intron 35.0%
TACTTGCAAATCTAAGCCTA+AGG - chr3_3:81798088-81798107 None:intergenic 35.0%
!! TCAATAAGTGCTGATCATGT+AGG + chr3_3:81798366-81798385 Msa0477560:intron 35.0%
CAGCTTATACAGAGTTTATG+TGG - chr3_3:81798444-81798463 None:intergenic 35.0%
AAACTGTTTAACAAACGAGG+GGG + chr3_3:81798689-81798708 Msa0477560:intron 35.0%
ATCAGAAATCACATTGCTTC+TGG - chr3_3:81798874-81798893 None:intergenic 35.0%
GAAAGTAACACCTATGAGAT+AGG + chr3_3:81799121-81799140 Msa0477560:CDS 35.0%
GAGTTACTTACCTATCTCAT+AGG - chr3_3:81799134-81799153 None:intergenic 35.0%
!!! TTTTTTCTCTAGCACATTGG+GGG - chr3_3:81799156-81799175 None:intergenic 35.0%
!!! CTTTTTTCTCTAGCACATTG+GGG - chr3_3:81799157-81799176 None:intergenic 35.0%
!!! CCTTTTTTCTCTAGCACATT+GGG - chr3_3:81799158-81799177 None:intergenic 35.0%
CCAATGTGCTAGAGAAAAAA+GGG + chr3_3:81799156-81799175 Msa0477560:intron 35.0%
CAATGTGCTAGAGAAAAAAG+GGG + chr3_3:81799157-81799176 Msa0477560:intron 35.0%
! GAATTGATTCCCTTGCAATT+GGG - chr3_3:81799341-81799360 None:intergenic 35.0%
CAATTGCAAGGGAATCAATT+CGG + chr3_3:81799340-81799359 Msa0477560:CDS 35.0%
AATTGCAAGGGAATCAATTC+GGG + chr3_3:81799341-81799360 Msa0477560:CDS 35.0%
! CAAATACTTGTTAGATACCC+TGG + chr3_3:81799478-81799497 Msa0477560:intron 35.0%
AGCGGTACAATATTACTCTT+GGG - chr3_3:81799512-81799531 None:intergenic 35.0%
AAGCGGTACAATATTACTCT+TGG - chr3_3:81799513-81799532 None:intergenic 35.0%
!!! CATGACATATTGTTTTGACC+TGG + chr3_3:81799562-81799581 Msa0477560:intron 35.0%
TACTCTATTCTACCATTACC+AGG - chr3_3:81799583-81799602 None:intergenic 35.0%
ATACAATCTTGACTCCATTG+AGG - chr3_3:81799663-81799682 None:intergenic 35.0%
! CAAGATTGTATTGCTGTTGT+AGG + chr3_3:81799672-81799691 Msa0477560:CDS 35.0%
TGGAAAGTCTGGTTGAAAAT+TGG + chr3_3:81799796-81799815 Msa0477560:CDS 35.0%
GGAAAGTCTGGTTGAAAATT+GGG + chr3_3:81799797-81799816 Msa0477560:CDS 35.0%
TTAGAACATCGCTACAGTAT+TGG + chr3_3:81800161-81800180 Msa0477560:intron 35.0%
GGGAAGACACTTAAAAACTA+TGG + chr3_3:81800280-81800299 Msa0477560:intron 35.0%
TTAAAAACTATGGCTGATCC+CGG + chr3_3:81800290-81800309 Msa0477560:intron 35.0%
TTGCGTCTTATATTACAGAG+GGG - chr3_3:81800367-81800386 None:intergenic 35.0%
TATTAGGTGTTAAGTTCCAC+GGG + chr3_3:81800405-81800424 Msa0477560:intron 35.0%
ACTTAATAGCAATGCTCTGT+GGG - chr3_3:81800456-81800475 None:intergenic 35.0%
AACTTAATAGCAATGCTCTG+TGG - chr3_3:81800457-81800476 None:intergenic 35.0%
TTGCATAGCAAGTAAGTCAT+GGG - chr3_3:81800527-81800546 None:intergenic 35.0%
ATTGCATAGCAAGTAAGTCA+TGG - chr3_3:81800528-81800547 None:intergenic 35.0%
AAAAATGAGTGTCTTGATGC+AGG + chr3_3:81800775-81800794 Msa0477560:intron 35.0%
ATTGCAGGATGTTCATGATA+GGG + chr3_3:81801029-81801048 Msa0477560:intron 35.0%
GCTTCTACAACACAATGTAT+CGG + chr3_3:81801068-81801087 Msa0477560:CDS 35.0%
AAATCAATCCAGACTGAATG+TGG - chr3_3:81801236-81801255 None:intergenic 35.0%
TTGGACATTTCTCAGACATA+TGG + chr3_3:81801440-81801459 Msa0477560:intron 35.0%
AAAGGATGATGATCAATGAG+GGG + chr3_3:81801592-81801611 Msa0477560:intron 35.0%
ACGTGTTTGTGTGTATGTAT+CGG + chr3_3:81801854-81801873 Msa0477560:intron 35.0%
ATTGATACAACGGCAAAATG+AGG + chr3_3:81801940-81801959 Msa0477560:intron 35.0%
TTGATACAACGGCAAAATGA+GGG + chr3_3:81801941-81801960 Msa0477560:intron 35.0%
TGTGACATGATTAGAAGTCA+AGG - chr3_3:81802025-81802044 None:intergenic 35.0%
AGCACAAGTTTAGATGAATG+AGG - chr3_3:81802193-81802212 None:intergenic 35.0%
AAAGATGATGTGAGAGATAC+TGG + chr3_3:81802536-81802555 Msa0477560:CDS 35.0%
ACTACCAATATCCTTATCAG+AGG + chr3_3:81802799-81802818 Msa0477560:CDS 35.0%
CAAACCTCTGATAAGGATAT+TGG - chr3_3:81802806-81802825 None:intergenic 35.0%
TTCAAAGCAAACCTCTGATA+AGG - chr3_3:81802813-81802832 None:intergenic 35.0%
TCAATGATGCAATTGCAAGA+GGG - chr3_3:81803180-81803199 None:intergenic 35.0%
AGAACTTGAAATTAGGAGAC+TGG - chr3_3:81803267-81803286 None:intergenic 35.0%
CAAATTTGGACAAAGCTGAT+TGG - chr3_3:81803423-81803442 None:intergenic 35.0%
! CAATCAGCTTTGTCCAAATT+TGG + chr3_3:81803421-81803440 Msa0477560:CDS 35.0%
! GTATGCACCTTTAAGTTTCA+GGG - chr3_3:81803451-81803470 None:intergenic 35.0%
! AGTATGCACCTTTAAGTTTC+AGG - chr3_3:81803452-81803471 None:intergenic 35.0%
TGCATTGTTATACACTGATC+TGG - chr3_3:81803583-81803602 None:intergenic 35.0%
AGATCAGTGTATAACAATGC+AGG + chr3_3:81803582-81803601 Msa0477560:three_prime_UTR 35.0%
GATCAGTGTATAACAATGCA+GGG + chr3_3:81803583-81803602 Msa0477560:three_prime_UTR 35.0%
ATCAGTGTATAACAATGCAG+GGG + chr3_3:81803584-81803603 Msa0477560:three_prime_UTR 35.0%
AATGAATCACGATGTTGGAT+TGG - chr3_3:81803646-81803665 None:intergenic 35.0%
CATCTAATGAATCACGATGT+TGG - chr3_3:81803651-81803670 None:intergenic 35.0%
CAAGCGATTATTGTGTTCTA+CGG + chr3_3:81803747-81803766 Msa0477560:three_prime_UTR 35.0%
GGAAGATGAAGATCGATAGT+TGG - chr3_3:81794299-81794318 None:intergenic 40.0%
TCTTCATCTTCCATCCTTGT+TGG + chr3_3:81794307-81794326 Msa0477560:five_prime_UTR 40.0%
TGAGATCTAACCAACAAGGA+TGG - chr3_3:81794320-81794339 None:intergenic 40.0%
GAAGGAGATCGATTAGATTG+CGG - chr3_3:81794418-81794437 None:intergenic 40.0%
GTAAGATGAAGAGATGAGTG+AGG - chr3_3:81794467-81794486 None:intergenic 40.0%
!!! ACATTGCAATTGCCGCTTTT+TGG + chr3_3:81794544-81794563 Msa0477560:intron 40.0%
ATCAGATACTTCACTCTTCC+TGG - chr3_3:81794866-81794885 None:intergenic 40.0%
ATCGTCAAAAGAGCAAGATC+CGG - chr3_3:81795099-81795118 None:intergenic 40.0%
TCAAAGGGATTGTAAGGATC+AGG + chr3_3:81795128-81795147 Msa0477560:CDS 40.0%
! AACTTGGTGGAGTATTTGGT+TGG + chr3_3:81795204-81795223 Msa0477560:CDS 40.0%
! ACTTGGTGGAGTATTTGGTT+GGG + chr3_3:81795205-81795224 Msa0477560:CDS 40.0%
AGTATTTGGTTGGGCCTTTA+GGG + chr3_3:81795214-81795233 Msa0477560:CDS 40.0%
TAATAGTTATGTCAGGACGG+TGG + chr3_3:81795254-81795273 Msa0477560:CDS 40.0%
AGTTCTGTTCAACTTCGTGA+AGG + chr3_3:81795438-81795457 Msa0477560:intron 40.0%
CAACTTCGTGAAGGTTTAAG+AGG + chr3_3:81795447-81795466 Msa0477560:intron 40.0%
!!! ATTTTTTTGGGCCTGTGCTT+TGG + chr3_3:81795604-81795623 Msa0477560:intron 40.0%
!!! TTTTTTTGGGCCTGTGCTTT+GGG + chr3_3:81795605-81795624 Msa0477560:intron 40.0%
! TGGGCTAGAAGTTACTTAGT+TGG + chr3_3:81795624-81795643 Msa0477560:intron 40.0%
GGGCTAGAAGTTACTTAGTT+GGG + chr3_3:81795625-81795644 Msa0477560:intron 40.0%
GTTACTTAGTTGGGAAATGG+AGG + chr3_3:81795634-81795653 Msa0477560:intron 40.0%
TACTTAGTTGGGAAATGGAG+GGG + chr3_3:81795636-81795655 Msa0477560:intron 40.0%
! CCATGAGACAACTTTTTGTC+CGG - chr3_3:81795922-81795941 None:intergenic 40.0%
ACAAGAGACTGGACAAAAAC+AGG - chr3_3:81795968-81795987 None:intergenic 40.0%
!! GTAGATTAGCTTGGTTCTAG+GGG - chr3_3:81796126-81796145 None:intergenic 40.0%
TGTAGTTACTGGAGAGAGAA+AGG + chr3_3:81796184-81796203 Msa0477560:intron 40.0%
GTAGTTACTGGAGAGAGAAA+GGG + chr3_3:81796185-81796204 Msa0477560:intron 40.0%
TAGTAGTTACCTCCGTAGTT+GGG + chr3_3:81796259-81796278 Msa0477560:intron 40.0%
ATCAATCCATGTCCAGTAGA+GGG - chr3_3:81796343-81796362 None:intergenic 40.0%
AATCAATCCATGTCCAGTAG+AGG - chr3_3:81796344-81796363 None:intergenic 40.0%
! TGAACTCCTTTAGAAAGCTG+AGG + chr3_3:81797082-81797101 Msa0477560:intron 40.0%
TATGCACCTCAGCTTTCTAA+AGG - chr3_3:81797091-81797110 None:intergenic 40.0%
AATGTCTTTCTCATTGTGGC+AGG + chr3_3:81797399-81797418 Msa0477560:intron 40.0%
! ATGTCTTGTGATGGAATTGG+TGG + chr3_3:81797535-81797554 Msa0477560:CDS 40.0%
CATGCTGTAGTCTATCTTCA+AGG - chr3_3:81797610-81797629 None:intergenic 40.0%
GATAGACTACAGCATGCAAA+TGG + chr3_3:81797614-81797633 Msa0477560:CDS 40.0%
CCATAGATAAAGTCAAGTGC+AGG - chr3_3:81797670-81797689 None:intergenic 40.0%
CCTGCACTTGACTTTATCTA+TGG + chr3_3:81797667-81797686 Msa0477560:CDS 40.0%
GTAGCTCACTGAATCATACA+CGG + chr3_3:81797845-81797864 Msa0477560:intron 40.0%
TAGCTCACTGAATCATACAC+GGG + chr3_3:81797846-81797865 Msa0477560:intron 40.0%
TACTTGCACCTCTAAGTCTA+AGG - chr3_3:81797951-81797970 None:intergenic 40.0%
CAGTTCCTTAAGGTTCTGTA+AGG + chr3_3:81798015-81798034 Msa0477560:intron 40.0%
AACTGGGTAGTGTTAACCTT+AGG + chr3_3:81798069-81798088 Msa0477560:intron 40.0%
TCCTTTGGTTGAAACCAGTT+TGG + chr3_3:81798127-81798146 Msa0477560:intron 40.0%
CACTCTCATTTCCTCTTCTA+TGG - chr3_3:81798417-81798436 None:intergenic 40.0%
GAGCTCATACATGGTATAAG+TGG + chr3_3:81798484-81798503 Msa0477560:intron 40.0%
! AGCTGAGCCTTATGCAAATA+TGG - chr3_3:81798756-81798775 None:intergenic 40.0%
TAAGGCTCAGCTTGATTACA+TGG + chr3_3:81798764-81798783 Msa0477560:intron 40.0%
AGCTCACTTGAGTTAAGAGA+GGG - chr3_3:81798937-81798956 None:intergenic 40.0%
!! ATAGAAGTGTTTGTAGTCCG+AGG - chr3_3:81799035-81799054 None:intergenic 40.0%
CATATGATGGCTCGTTATAC+TGG - chr3_3:81799060-81799079 None:intergenic 40.0%
CCCAATGTGCTAGAGAAAAA+AGG + chr3_3:81799155-81799174 Msa0477560:intron 40.0%
!!! CCCTTTTTTCTCTAGCACAT+TGG - chr3_3:81799159-81799178 None:intergenic 40.0%
GCTAGAGAAAAAAGGGGATT+AGG + chr3_3:81799163-81799182 Msa0477560:intron 40.0%
ATGTTGACATCCCAATTGCA+AGG + chr3_3:81799328-81799347 Msa0477560:CDS 40.0%
TGTTGACATCCCAATTGCAA+GGG + chr3_3:81799329-81799348 Msa0477560:CDS 40.0%
! CGAATTGATTCCCTTGCAAT+TGG - chr3_3:81799342-81799361 None:intergenic 40.0%
CAACAATGTCCAAGAACCTA+AGG + chr3_3:81799707-81799726 Msa0477560:CDS 40.0%
ACCAGACTTTCCAAGACATA+CGG - chr3_3:81799789-81799808 None:intergenic 40.0%
TTGGGATAGTTGGATCATGA+AGG - chr3_3:81799919-81799938 None:intergenic 40.0%
ATCATTCAAGACCAAAGAGC+CGG - chr3_3:81799995-81800014 None:intergenic 40.0%
ATATAAGACGCAATTGTGGC+TGG + chr3_3:81800374-81800393 Msa0477560:intron 40.0%
! CAGTGAGTTGAATCTTAGAC+TGG - chr3_3:81800638-81800657 None:intergenic 40.0%
!! CATGAGCTTTTGTTGATTGC+AGG + chr3_3:81801014-81801033 Msa0477560:intron 40.0%
GATTGCAGGATGTTCATGAT+AGG + chr3_3:81801028-81801047 Msa0477560:intron 40.0%
TCTACAACACAATGTATCGG+TGG + chr3_3:81801071-81801090 Msa0477560:CDS 40.0%
!!! CTGAAACTGCTTGTTTTGGA+GGG - chr3_3:81801113-81801132 None:intergenic 40.0%
!!! ACTGAAACTGCTTGTTTTGG+AGG - chr3_3:81801114-81801133 None:intergenic 40.0%
! AACTTCACTGCTCTGAGTAT+CGG - chr3_3:81801142-81801161 None:intergenic 40.0%
! GCAGTAAATTTTGCCCGAAA+TGG - chr3_3:81801270-81801289 None:intergenic 40.0%
AAGGATGATGATCAATGAGG+GGG + chr3_3:81801593-81801612 Msa0477560:intron 40.0%
GGGGAGAAACACAGTTTAAA+TGG - chr3_3:81801992-81802011 None:intergenic 40.0%
AAACTTGTGCTTCTATGCCT+TGG + chr3_3:81802202-81802221 Msa0477560:intron 40.0%
GGGAAGAAATAGACAAGGAT+CGG - chr3_3:81802306-81802325 None:intergenic 40.0%
CTGAAAACTCAAATGTCCCT+CGG - chr3_3:81802412-81802431 None:intergenic 40.0%
TGGCAATCTGTCTATTAGTG+CGG + chr3_3:81802439-81802458 Msa0477560:CDS 40.0%
! TCTCACATCATCTTTTTCCG+TGG - chr3_3:81802531-81802550 None:intergenic 40.0%
GAAAATGCCAAATCTGCAAG+CGG - chr3_3:81802626-81802645 None:intergenic 40.0%
GATCATCAATTGCCAATGCT+TGG - chr3_3:81802667-81802686 None:intergenic 40.0%
! TTGGCAATTGATGATCTGCT+TGG + chr3_3:81802671-81802690 Msa0477560:CDS 40.0%
GTGATATGGCAAGACTTTAC+TGG - chr3_3:81802893-81802912 None:intergenic 40.0%
GTCAATGATGCAATTGCAAG+AGG - chr3_3:81803181-81803200 None:intergenic 40.0%
TCAATACAGTGCATTGCATC+CGG + chr3_3:81803238-81803257 Msa0477560:CDS 40.0%
GTTTCAGGGCAAACCAAATT+TGG - chr3_3:81803437-81803456 None:intergenic 40.0%
! TGGTTTGCCCTGAAACTTAA+AGG + chr3_3:81803441-81803460 Msa0477560:exon 40.0%
TCAGTGTATAACAATGCAGG+GGG + chr3_3:81803585-81803604 Msa0477560:three_prime_UTR 40.0%
AGTCGTAGAAAACATGAGTC+TGG + chr3_3:81803677-81803696 Msa0477560:three_prime_UTR 40.0%
GTCGTAGAAAACATGAGTCT+GGG + chr3_3:81803678-81803697 Msa0477560:three_prime_UTR 40.0%
TTCCGCACCAAATTTAATCG+CGG - chr3_3:81803784-81803803 None:intergenic 40.0%
GTTTGCAAGTCAACTTCCAG+TGG + chr3_3:81794375-81794394 Msa0477560:five_prime_UTR 45.0%
AAGTCAACTTCCAGTGGCTA+TGG + chr3_3:81794381-81794400 Msa0477560:exon 45.0%
TGAAGAGATGAGTGAGGGAA+CGG - chr3_3:81794461-81794480 None:intergenic 45.0%
CTCTTAGAGTCATCAGTACC+CGG - chr3_3:81794928-81794947 None:intergenic 45.0%
!! GGGTACTGATGACTCTAAGA+GGG + chr3_3:81794927-81794946 Msa0477560:CDS 45.0%
TTCGTCTCTCTTTGGTGAGA+TGG + chr3_3:81794996-81795015 Msa0477560:CDS 45.0%
AACTCCTTAATGCCAGTCCT+CGG - chr3_3:81795164-81795183 None:intergenic 45.0%
GAGTTTGTGTTCACTTCGAG+TGG + chr3_3:81795179-81795198 Msa0477560:CDS 45.0%
GAGTATTTGGTTGGGCCTTT+AGG + chr3_3:81795213-81795232 Msa0477560:CDS 45.0%
ATCTGCATCAATACACGTGG+AGG - chr3_3:81795316-81795335 None:intergenic 45.0%
GCATTTGATGCTCAATGACC+AGG + chr3_3:81795353-81795372 Msa0477560:CDS 45.0%
ATGACCAGGATACTCAGGTA+AGG + chr3_3:81795367-81795386 Msa0477560:intron 45.0%
CAATCCTTACCTGAGTATCC+TGG - chr3_3:81795374-81795393 None:intergenic 45.0%
! ATTGAGGGAGGAGCTAGTTT+AGG + chr3_3:81795572-81795591 Msa0477560:intron 45.0%
TAACTTCTAGCCCAAAGCAC+AGG - chr3_3:81795618-81795637 None:intergenic 45.0%
CGAGTATAATTCCCTGGTAC+CGG + chr3_3:81795702-81795721 Msa0477560:intron 45.0%
AAGTACATGCCTCCATGCTT+GGG - chr3_3:81795744-81795763 None:intergenic 45.0%
TAAGTACATGCCTCCATGCT+TGG - chr3_3:81795745-81795764 None:intergenic 45.0%
! AAGCATGGAGGCATGTACTT+AGG + chr3_3:81795744-81795763 Msa0477560:intron 45.0%
! AGCATGGAGGCATGTACTTA+GGG + chr3_3:81795745-81795764 Msa0477560:intron 45.0%
CCGGACAAAAAGTTGTCTCA+TGG + chr3_3:81795919-81795938 Msa0477560:intron 45.0%
CAAGACAGGTAACAAGAGAC+TGG - chr3_3:81795979-81795998 None:intergenic 45.0%
GTCATGGGATTGAACAAGAC+AGG - chr3_3:81795993-81796012 None:intergenic 45.0%
! CGGTTTCTTGGTGTAGTTAC+TGG + chr3_3:81796173-81796192 Msa0477560:intron 45.0%
CTAGTAGTTACCTCCGTAGT+TGG + chr3_3:81796258-81796277 Msa0477560:intron 45.0%
ATAGTATGATCCCCCTCTAC+TGG + chr3_3:81796328-81796347 Msa0477560:intron 45.0%
TCAATCCATGTCCAGTAGAG+GGG - chr3_3:81796342-81796361 None:intergenic 45.0%
!!! TTTTAAAATGGGAACCCCGG+AGG - chr3_3:81797155-81797174 None:intergenic 45.0%
! GTTTGCTACGTGCAGCATTA+AGG + chr3_3:81797493-81797512 Msa0477560:intron 45.0%
ATGGGCACAATGTCTTGTGA+TGG + chr3_3:81797526-81797545 Msa0477560:CDS 45.0%
!! TGCAAATGGTGCTGTTGTCT+TGG + chr3_3:81797628-81797647 Msa0477560:CDS 45.0%
TATGGCTGATGTACATCAGC+AGG + chr3_3:81797685-81797704 Msa0477560:CDS 45.0%
AGCTCACTGAATCATACACG+GGG + chr3_3:81797847-81797866 Msa0477560:intron 45.0%
GAGCTATCTGTGAGTTCCTT+TGG + chr3_3:81797975-81797994 Msa0477560:intron 45.0%
CATCGCCTTACAGAACCTTA+AGG - chr3_3:81797886-81797905 None:intergenic 45.0%
! GCCAAACTGGTTTCAACCAA+AGG - chr3_3:81798131-81798150 None:intergenic 45.0%
CCAGCTTTACTATACTGCTC+AGG - chr3_3:81798189-81798208 None:intergenic 45.0%
CCTGAGCAGTATAGTAAAGC+TGG + chr3_3:81798186-81798205 Msa0477560:intron 45.0%
! TGTTTCTGTGAGCCATCTTG+TGG + chr3_3:81798462-81798481 Msa0477560:intron 45.0%
CATGTATGAGCTCCACAAGA+TGG - chr3_3:81798477-81798496 None:intergenic 45.0%
CATCTTGTGGAGCTCATACA+TGG + chr3_3:81798475-81798494 Msa0477560:intron 45.0%
GCTCACTTGAGTTAAGAGAG+GGG - chr3_3:81798936-81798955 None:intergenic 45.0%
GAGCTCACTTGAGTTAAGAG+AGG - chr3_3:81798938-81798957 None:intergenic 45.0%
CTCTTAACTCAAGTGAGCTC+AGG + chr3_3:81798938-81798957 Msa0477560:CDS 45.0%
! GCAGTTTCTGGAGATGGAAA+AGG + chr3_3:81799422-81799441 Msa0477560:CDS 45.0%
! CTATGTTACGTCTGAAGCTC+TGG + chr3_3:81799446-81799465 Msa0477560:CDS 45.0%
ACTCTTGGGCAAAAATGCCA+GGG - chr3_3:81799498-81799517 None:intergenic 45.0%
TACTCTTGGGCAAAAATGCC+AGG - chr3_3:81799499-81799518 None:intergenic 45.0%
TGTCCAAGAACCTAAGGCTA+AGG + chr3_3:81799713-81799732 Msa0477560:CDS 45.0%
TCCGTATGTCTTGGAAAGTC+TGG + chr3_3:81799785-81799804 Msa0477560:CDS 45.0%
TCTGGTTGAAAATTGGGACG+AGG + chr3_3:81799803-81799822 Msa0477560:CDS 45.0%
! TATACCTCTAACCGGCTCTT+TGG + chr3_3:81799981-81800000 Msa0477560:intron 45.0%
ACTTCCTGATATCAACAGCC+GGG - chr3_3:81800311-81800330 None:intergenic 45.0%
GACTTCCTGATATCAACAGC+CGG - chr3_3:81800312-81800331 None:intergenic 45.0%
CTATTGTCTAGTATGACCCG+TGG - chr3_3:81800424-81800443 None:intergenic 45.0%
TTTGCCAAACTCACTAGAGC+AGG - chr3_3:81800594-81800613 None:intergenic 45.0%
!! AAGATTTGGTGGCAACTGCA+AGG - chr3_3:81800692-81800711 None:intergenic 45.0%
GTGAAAATCAGCAAGACCAG+CGG - chr3_3:81800885-81800904 None:intergenic 45.0%
!!! TGGTCTTGCTGATTTTCACC+AGG + chr3_3:81800886-81800905 Msa0477560:CDS 45.0%
CTGACTTACCACATTCAGTC+TGG + chr3_3:81801225-81801244 Msa0477560:intron 45.0%
! ATGAAGCACTAACACTGCTG+AGG + chr3_3:81801312-81801331 Msa0477560:intron 45.0%
ATACATGTCGTACGTGTGTC+GGG - chr3_3:81801361-81801380 None:intergenic 45.0%
GATACATGTCGTACGTGTGT+CGG - chr3_3:81801362-81801381 None:intergenic 45.0%
GACACACGTACGACATGTAT+CGG + chr3_3:81801361-81801380 Msa0477560:intron 45.0%
ATGAAGCACAGACTCCAACA+AGG - chr3_3:81801916-81801935 None:intergenic 45.0%
GGGAAGGGAAGAAATAGACA+AGG - chr3_3:81802311-81802330 None:intergenic 45.0%
CAGTGAACATGTAAGAAGGC+TGG - chr3_3:81802379-81802398 None:intergenic 45.0%
TTCACTGATAAGGAACACCG+AGG + chr3_3:81802392-81802411 Msa0477560:CDS 45.0%
TCACTGATAAGGAACACCGA+GGG + chr3_3:81802393-81802412 Msa0477560:CDS 45.0%
CTGTCTATTAGTGCGGAATC+CGG + chr3_3:81802446-81802465 Msa0477560:CDS 45.0%
GGATCTGCTTCTAAGTACCA+CGG + chr3_3:81802511-81802530 Msa0477560:CDS 45.0%
GTGAGAGATACTGGAAGCAA+TGG + chr3_3:81802545-81802564 Msa0477560:CDS 45.0%
TTCACAACCGCTTGCAGATT+TGG + chr3_3:81802616-81802635 Msa0477560:CDS 45.0%
!!! CAGTACAGCTTTTGGGTTGA+GGG - chr3_3:81802747-81802766 None:intergenic 45.0%
! CAGGATCCAGTACAGCTTTT+GGG - chr3_3:81802754-81802773 None:intergenic 45.0%
CATTTCTGCTGAAATGTGCC+AGG - chr3_3:81802773-81802792 None:intergenic 45.0%
CTGGCACATTTCAGCAGAAA+TGG + chr3_3:81802771-81802790 Msa0477560:CDS 45.0%
AATGACTTTGCATGTGCCGT+AGG - chr3_3:81803219-81803238 None:intergenic 45.0%
! AGGTGCATACTTTTGAGCTG+TGG + chr3_3:81803461-81803480 Msa0477560:three_prime_UTR 45.0%
! ACTGATCTGGTCCGTTTTAG+GGG - chr3_3:81803570-81803589 None:intergenic 45.0%
! CACTGATCTGGTCCGTTTTA+GGG - chr3_3:81803571-81803590 None:intergenic 45.0%
! ACACTGATCTGGTCCGTTTT+AGG - chr3_3:81803572-81803591 None:intergenic 45.0%
GATTGCGCCGCGATTAAATT+TGG + chr3_3:81803774-81803793 Msa0477560:three_prime_UTR 45.0%
!!! TATTTCAATTTTTTTTAAAT+AGG - chr3_3:81796857-81796876 None:intergenic 5.0%
!! TAAAAAAAAAAAAAAAGATT+TGG - chr3_3:81800706-81800725 None:intergenic 5.0%
!!! TTTTTAATTTGATAAATAAT+AGG + chr3_3:81800720-81800739 Msa0477560:intron 5.0%
!! TTGACTTGCAAACGCTCCTC+GGG - chr3_3:81794368-81794387 None:intergenic 50.0%
!! GTTGACTTGCAAACGCTCCT+CGG - chr3_3:81794369-81794388 None:intergenic 50.0%
GGAGATCGATTAGATTGCGG+TGG - chr3_3:81794415-81794434 None:intergenic 50.0%
!! CGGGTACTGATGACTCTAAG+AGG + chr3_3:81794926-81794945 Msa0477560:CDS 50.0%
AATGCCAGTCCTCGGATCAT+CGG - chr3_3:81795156-81795175 None:intergenic 50.0%
! TGATCCGAGGACTGGCATTA+AGG + chr3_3:81795157-81795176 Msa0477560:CDS 50.0%
TTCACTTCGAGTGGCGAACT+TGG + chr3_3:81795188-81795207 Msa0477560:CDS 50.0%
! GGCGAACTTGGTGGAGTATT+TGG + chr3_3:81795200-81795219 Msa0477560:CDS 50.0%
TCCTTCAACCCTGACCCTAA+AGG - chr3_3:81795231-81795250 None:intergenic 50.0%
GCTCAATGACCAGGATACTC+AGG + chr3_3:81795362-81795381 Msa0477560:CDS 50.0%
AGTTGGGAAATGGAGGGGTT+TGG + chr3_3:81795641-81795660 Msa0477560:intron 50.0%
CCAATCACTATCCGGTACCA+GGG - chr3_3:81795716-81795735 None:intergenic 50.0%
ACCAATCACTATCCGGTACC+AGG - chr3_3:81795717-81795736 None:intergenic 50.0%
GGGAACGACCAATCACTATC+CGG - chr3_3:81795724-81795743 None:intergenic 50.0%
! TGATTGGTCGTTCCCAAGCA+TGG + chr3_3:81795729-81795748 Msa0477560:intron 50.0%
AGAGCCAAAGCTCCCAACTA+CGG - chr3_3:81796274-81796293 None:intergenic 50.0%
CAATCCATGTCCAGTAGAGG+GGG - chr3_3:81796341-81796360 None:intergenic 50.0%
!! CTCTGAGGTGGTTGACTCTA+AGG - chr3_3:81796970-81796989 None:intergenic 50.0%
CTTAGAGTCAACCACCTCAG+AGG + chr3_3:81796968-81796987 Msa0477560:CDS 50.0%
GCTCACTGAATCATACACGG+GGG + chr3_3:81797848-81797867 Msa0477560:intron 50.0%
GTTCTGTAAGGCGATGCTTG+TGG + chr3_3:81797890-81797909 Msa0477560:intron 50.0%
GTTCTGTAAGGCGATGCTTG+TGG + chr3_3:81797890-81797909 Msa0477560:intron 50.0%
GAGCTATCTGCGTGTTCCTT+TGG + chr3_3:81798112-81798131 Msa0477560:intron 50.0%
TACGGTGAACTGAGCCAAAC+TGG - chr3_3:81798144-81798163 None:intergenic 50.0%
TCAAGTGAGCTCAGGAAGTC+CGG + chr3_3:81798946-81798965 Msa0477560:CDS 50.0%
TCTAAGCCACCTGCATCTCT+TGG + chr3_3:81798985-81799004 Msa0477560:CDS 50.0%
GCATTACCAAGAGATGCAGG+TGG - chr3_3:81798994-81799013 None:intergenic 50.0%
CACGCATTACCAAGAGATGC+AGG - chr3_3:81798997-81799016 None:intergenic 50.0%
AGGGAATCAATTCGGGCTGT+TGG + chr3_3:81799348-81799367 Msa0477560:CDS 50.0%
! TGATCGGCTTCTGCAGTTTC+TGG + chr3_3:81799410-81799429 Msa0477560:CDS 50.0%
! GCTTCTGCAGTTTCTGGAGA+TGG + chr3_3:81799416-81799435 Msa0477560:CDS 50.0%
!! CTGCCTTAGCCTTAGGTTCT+TGG - chr3_3:81799719-81799738 None:intergenic 50.0%
! ATGAGAGCTGCCTTAGCCTT+AGG - chr3_3:81799726-81799745 None:intergenic 50.0%
AGGCTAAGGCAGCTCTCATA+TGG + chr3_3:81799727-81799746 Msa0477560:CDS 50.0%
GCAGCTCTCATATGGATGCT+GGG + chr3_3:81799735-81799754 Msa0477560:CDS 50.0%
CAGCTCTCATATGGATGCTG+GGG + chr3_3:81799736-81799755 Msa0477560:CDS 50.0%
AGCTCTCATATGGATGCTGG+GGG + chr3_3:81799737-81799756 Msa0477560:CDS 50.0%
GCATGATGCTCCGTATGTCT+TGG + chr3_3:81799776-81799795 Msa0477560:CDS 50.0%
AAGACCAAAGAGCCGGTTAG+AGG - chr3_3:81799988-81800007 None:intergenic 50.0%
TGATCCCGGCTGTTGATATC+AGG + chr3_3:81800304-81800323 Msa0477560:intron 50.0%
ATTACAGAGGGGACGACTTC+TGG - chr3_3:81800356-81800375 None:intergenic 50.0%
GTGGCTGGAGCCTTGATATT+AGG + chr3_3:81800389-81800408 Msa0477560:intron 50.0%
CAGTCCTGCTCTAGTGAGTT+TGG + chr3_3:81800587-81800606 Msa0477560:intron 50.0%
TCCCAGTGCTTTCTGAGTCT+CGG - chr3_3:81800852-81800871 None:intergenic 50.0%
GCACTAACACTGCTGAGGTT+AGG + chr3_3:81801317-81801336 Msa0477560:intron 50.0%
CGATGTTGACGTCTCCTTGT+TGG + chr3_3:81801899-81801918 Msa0477560:intron 50.0%
! TGCTTCTATGCCTTGGCTTG+AGG + chr3_3:81802209-81802228 Msa0477560:intron 50.0%
! GCTTCTATGCCTTGGCTTGA+GGG + chr3_3:81802210-81802229 Msa0477560:intron 50.0%
CGCAGGAACAACAGAATCTC+CGG - chr3_3:81802468-81802487 None:intergenic 50.0%
GAGAGTGGAGGCAAATGACA+AGG + chr3_3:81802490-81802509 Msa0477560:CDS 50.0%
TGAAGGGGCAGACCCATTAT+AGG - chr3_3:81802591-81802610 None:intergenic 50.0%
!!! TTTTGGGTTGAGGGTCAACG+GGG - chr3_3:81802738-81802757 None:intergenic 50.0%
!!! CTTTTGGGTTGAGGGTCAAC+GGG - chr3_3:81802739-81802758 None:intergenic 50.0%
!!! GCTTTTGGGTTGAGGGTCAA+CGG - chr3_3:81802740-81802759 None:intergenic 50.0%
!!! CCAGTACAGCTTTTGGGTTG+AGG - chr3_3:81802748-81802767 None:intergenic 50.0%
CCTCAACCCAAAAGCTGTAC+TGG + chr3_3:81802745-81802764 Msa0477560:CDS 50.0%
! CCAGGATCCAGTACAGCTTT+TGG - chr3_3:81802755-81802774 None:intergenic 50.0%
CCAAAAGCTGTACTGGATCC+TGG + chr3_3:81802752-81802771 Msa0477560:CDS 50.0%
! ATGTGCCGTAGGAGTGCATT+GGG - chr3_3:81803208-81803227 None:intergenic 50.0%
ATACAGTGCATTGCATCCGG+CGG + chr3_3:81803241-81803260 Msa0477560:CDS 50.0%
TGATGACCAAAGCTCGTCAC+AGG + chr3_3:81803381-81803400 Msa0477560:CDS 50.0%
AGAATGCCTGTGACGAGCTT+TGG - chr3_3:81803390-81803409 None:intergenic 50.0%
CTAATCCCCCTCCCCTAAAA+CGG + chr3_3:81803556-81803575 Msa0477560:three_prime_UTR 50.0%
!!! ATCTGGTCCGTTTTAGGGGA+GGG - chr3_3:81803566-81803585 None:intergenic 50.0%
TCTGGGTTGCAAGTGTGTAG+AGG + chr3_3:81803695-81803714 Msa0477560:three_prime_UTR 50.0%
! CGCCGCGATTAAATTTGGTG+CGG + chr3_3:81803779-81803798 Msa0477560:three_prime_UTR 50.0%
! CTAATGATGCAAGGTGCCTG+CGG + chr3_3:81803841-81803860 Msa0477560:three_prime_UTR 50.0%
GCTAAAAAAGGAGACACCGC+AGG - chr3_3:81803860-81803879 None:intergenic 50.0%
CGACGTAGTAGAAGCTGACG+TGG - chr3_3:81794152-81794171 None:intergenic 55.0%
CGATTAGATTGCGGTGGTGC+AGG - chr3_3:81794409-81794428 None:intergenic 55.0%
TTACAGCTACGGCAGCTTGC+TGG + chr3_3:81794892-81794911 Msa0477560:CDS 55.0%
! TACAGCTACGGCAGCTTGCT+GGG + chr3_3:81794893-81794912 Msa0477560:CDS 55.0%
GATCAGGATCCGATGATCCG+AGG + chr3_3:81795144-81795163 Msa0477560:CDS 55.0%
ACTTCGAGTGGCGAACTTGG+TGG + chr3_3:81795191-81795210 Msa0477560:CDS 55.0%
!! TTGGTTGGGCCTTTAGGGTC+AGG + chr3_3:81795219-81795238 Msa0477560:CDS 55.0%
!! TGGTTGGGCCTTTAGGGTCA+GGG + chr3_3:81795220-81795239 Msa0477560:CDS 55.0%
!! GCCTTTAGGGTCAGGGTTGA+AGG + chr3_3:81795227-81795246 Msa0477560:CDS 55.0%
GTCAGGACGGTGGCAGTAAT+CGG + chr3_3:81795264-81795283 Msa0477560:CDS 55.0%
! CCCTGGTACCGGATAGTGAT+TGG + chr3_3:81795713-81795732 Msa0477560:intron 55.0%
TTGGTCGTTCCCAAGCATGG+AGG + chr3_3:81795732-81795751 Msa0477560:intron 55.0%
ACCTCCGTAGTTGGGAGCTT+TGG + chr3_3:81796267-81796286 Msa0477560:intron 55.0%
TGATCCCCCTCTACTGGACA+TGG + chr3_3:81796334-81796353 Msa0477560:intron 55.0%
CACCTCAGAGGAAGCAGCTA+GGG + chr3_3:81796980-81796999 Msa0477560:CDS 55.0%
GCTTCAAAACCACCCTCCTC+CGG + chr3_3:81797136-81797155 Msa0477560:intron 55.0%
CTTCAAAACCACCCTCCTCC+GGG + chr3_3:81797137-81797156 Msa0477560:intron 55.0%
TTCAAAACCACCCTCCTCCG+GGG + chr3_3:81797138-81797157 Msa0477560:intron 55.0%
AAAATGGGAACCCCGGAGGA+GGG - chr3_3:81797151-81797170 None:intergenic 55.0%
TAAAATGGGAACCCCGGAGG+AGG - chr3_3:81797152-81797171 None:intergenic 55.0%
GGCAGCTCTCATATGGATGC+TGG + chr3_3:81799734-81799753 Msa0477560:CDS 55.0%
ACGACTTCTGGCACTAGAGC+TGG - chr3_3:81800344-81800363 None:intergenic 55.0%
AGTGCTTTCTGAGTCTCGGG+GGG - chr3_3:81800848-81800867 None:intergenic 55.0%
CAGTGCTTTCTGAGTCTCGG+GGG - chr3_3:81800849-81800868 None:intergenic 55.0%
CCAGTGCTTTCTGAGTCTCG+GGG - chr3_3:81800850-81800869 None:intergenic 55.0%
CCCAGTGCTTTCTGAGTCTC+GGG - chr3_3:81800851-81800870 None:intergenic 55.0%
!! CCCGAGACTCAGAAAGCACT+GGG + chr3_3:81800848-81800867 Msa0477560:CDS 55.0%
! TGTATCGGTGGCTGAGAGTG+TGG + chr3_3:81801083-81801102 Msa0477560:CDS 55.0%
AAGCTGTAGCCCTCAAGCCA+AGG - chr3_3:81802222-81802241 None:intergenic 55.0%
GAGGGCTACAGCTTACACTG+TGG + chr3_3:81802228-81802247 Msa0477560:intron 55.0%
GCTACAGCTTACACTGTGGC+AGG + chr3_3:81802232-81802251 Msa0477560:intron 55.0%
TGTTGTTCCTGCGCAGAGAG+TGG + chr3_3:81802475-81802494 Msa0477560:CDS 55.0%
GGGGCAGACCCATTATAGGA+AGG - chr3_3:81802587-81802606 None:intergenic 55.0%
CGGTTGTGAAGCTGCTGAAG+GGG - chr3_3:81802606-81802625 None:intergenic 55.0%
GCGGTTGTGAAGCTGCTGAA+GGG - chr3_3:81802607-81802626 None:intergenic 55.0%
AGCGGTTGTGAAGCTGCTGA+AGG - chr3_3:81802608-81802627 None:intergenic 55.0%
! CAATGCTTGGCTAGTCGTGC+TGG - chr3_3:81802654-81802673 None:intergenic 55.0%
! CAGCACGACTAGCCAAGCAT+TGG + chr3_3:81802652-81802671 Msa0477560:CDS 55.0%
!! TTTGGGTTGAGGGTCAACGG+GGG - chr3_3:81802737-81802756 None:intergenic 55.0%
CGACTCCCAATGCACTCCTA+CGG + chr3_3:81803200-81803219 Msa0477560:CDS 55.0%
! CATGTGCCGTAGGAGTGCAT+TGG - chr3_3:81803209-81803228 None:intergenic 55.0%
! GAAATTAGGAGACTGGCCGC+CGG - chr3_3:81803260-81803279 None:intergenic 55.0%
! TTAGGGGAGGGGGATTAGTG+TGG - chr3_3:81803554-81803573 None:intergenic 55.0%
!!! TCTGGTCCGTTTTAGGGGAG+GGG - chr3_3:81803565-81803584 None:intergenic 55.0%
!!! GATCTGGTCCGTTTTAGGGG+AGG - chr3_3:81803567-81803586 None:intergenic 55.0%
AAGACGGCGCGAATTTCCCG+AGG + chr3_3:81794349-81794368 Msa0477560:five_prime_UTR 60.0%
GATGAGTGAGGGAACGGACC+CGG - chr3_3:81794455-81794474 None:intergenic 60.0%
GGATCCGATGATCCGAGGAC+TGG + chr3_3:81795149-81795168 Msa0477560:CDS 60.0%
GCCAAAGCTCCCAACTACGG+AGG - chr3_3:81796271-81796290 None:intergenic 60.0%
! CCTAGCTGCTTCCTCTGAGG+TGG - chr3_3:81796982-81797001 None:intergenic 60.0%
CCACCTCAGAGGAAGCAGCT+AGG + chr3_3:81796979-81796998 Msa0477560:CDS 60.0%
CTCCCTAGCTGCTTCCTCTG+AGG - chr3_3:81796985-81797004 None:intergenic 60.0%
! CCCCGAGACTCAGAAAGCAC+TGG + chr3_3:81800847-81800866 Msa0477560:CDS 60.0%
!! GAAAGCACTGGGAGCTGCAC+TGG + chr3_3:81800859-81800878 Msa0477560:CDS 60.0%
GGTTAGGCGTGTCCCCATGT+CGG + chr3_3:81801333-81801352 Msa0477560:intron 60.0%
TGTTCCTGCGCAGAGAGTGG+AGG + chr3_3:81802478-81802497 Msa0477560:CDS 60.0%
TTTGCCTCCACTCTCTGCGC+AGG - chr3_3:81802485-81802504 None:intergenic 60.0%
!!! CTGGTCCGTTTTAGGGGAGG+GGG - chr3_3:81803564-81803583 None:intergenic 60.0%
GGTGCAGGAGCCATAGCCAC+TGG - chr3_3:81794394-81794413 None:intergenic 65.0%
AGTGAGGGAACGGACCCGGA+CGG - chr3_3:81794451-81794470 None:intergenic 65.0%
! GCTTGCTGGGAGTCGAGCTC+CGG + chr3_3:81794906-81794925 Msa0477560:CDS 65.0%
CTTGCTGGGAGTCGAGCTCC+GGG + chr3_3:81794907-81794926 Msa0477560:CDS 65.0%
!! GGACGAGGAGCATTCTGCCG+AGG + chr3_3:81799818-81799837 Msa0477560:CDS 65.0%
!! GTGTGTCGGGCACCGACATG+GGG - chr3_3:81801348-81801367 None:intergenic 65.0%
!! CGTGTGTCGGGCACCGACAT+GGG - chr3_3:81801349-81801368 None:intergenic 65.0%
!! ACGTGTGTCGGGCACCGACA+TGG - chr3_3:81801350-81801369 None:intergenic 65.0%
AGGGTCAACGGGGGAGGTGA+CGG - chr3_3:81802728-81802747 None:intergenic 65.0%
CCTTCGCCGTCGCAACCGTC+CGG + chr3_3:81794433-81794452 Msa0477560:CDS 70.0%
CTTCGCCGTCGCAACCGTCC+GGG + chr3_3:81794434-81794453 Msa0477560:CDS 70.0%
ACGGACCCGGACGGTTGCGA+CGG - chr3_3:81794442-81794461 None:intergenic 70.0%
ATGGGAACCCCGGAGGAGGG+TGG - chr3_3:81797148-81797167 None:intergenic 70.0%
GGGTTGAGGGTCAACGGGGG+AGG - chr3_3:81802734-81802753 None:intergenic 70.0%
CCGGACGGTTGCGACGGCGA+AGG - chr3_3:81794436-81794455 None:intergenic 75.0%
! CTGGGAGCTGCACTGGCCGC+TGG + chr3_3:81800866-81800885 Msa0477560:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 81794098 81803880 81794098 ID=Msa0477560;Name=Msa0477560
chr3_3 mRNA 81794098 81803880 81794098 ID=Msa0477560-mRNA-1;Parent=Msa0477560;Name=Msa0477560-mRNA-1;_AED=0.06;_eAED=0.06;_QI=302|1|1|1|1|1|11|427|840
chr3_3 exon 81794098 81794455 81794098 ID=Msa0477560-mRNA-1:exon:22623;Parent=Msa0477560-mRNA-1
chr3_3 exon 81794867 81795383 81794867 ID=Msa0477560-mRNA-1:exon:22624;Parent=Msa0477560-mRNA-1
chr3_3 exon 81796927 81797051 81796927 ID=Msa0477560-mRNA-1:exon:22625;Parent=Msa0477560-mRNA-1
chr3_3 exon 81797508 81797706 81797508 ID=Msa0477560-mRNA-1:exon:22626;Parent=Msa0477560-mRNA-1
chr3_3 exon 81798914 81799142 81798914 ID=Msa0477560-mRNA-1:exon:22627;Parent=Msa0477560-mRNA-1
chr3_3 exon 81799301 81799467 81799301 ID=Msa0477560-mRNA-1:exon:22628;Parent=Msa0477560-mRNA-1
chr3_3 exon 81799630 81799839 81799630 ID=Msa0477560-mRNA-1:exon:22629;Parent=Msa0477560-mRNA-1
chr3_3 exon 81800797 81800907 81800797 ID=Msa0477560-mRNA-1:exon:22630;Parent=Msa0477560-mRNA-1
chr3_3 exon 81801036 81801212 81801036 ID=Msa0477560-mRNA-1:exon:22631;Parent=Msa0477560-mRNA-1
chr3_3 exon 81802380 81802820 81802380 ID=Msa0477560-mRNA-1:exon:22632;Parent=Msa0477560-mRNA-1
chr3_3 exon 81803163 81803880 81803163 ID=Msa0477560-mRNA-1:exon:22633;Parent=Msa0477560-mRNA-1
chr3_3 five_prime_UTR 81794098 81794399 81794098 ID=Msa0477560-mRNA-1:five_prime_utr;Parent=Msa0477560-mRNA-1
chr3_3 CDS 81794400 81794455 81794400 ID=Msa0477560-mRNA-1:cds;Parent=Msa0477560-mRNA-1
chr3_3 CDS 81794867 81795383 81794867 ID=Msa0477560-mRNA-1:cds;Parent=Msa0477560-mRNA-1
chr3_3 CDS 81796927 81797051 81796927 ID=Msa0477560-mRNA-1:cds;Parent=Msa0477560-mRNA-1
chr3_3 CDS 81797508 81797706 81797508 ID=Msa0477560-mRNA-1:cds;Parent=Msa0477560-mRNA-1
chr3_3 CDS 81798914 81799142 81798914 ID=Msa0477560-mRNA-1:cds;Parent=Msa0477560-mRNA-1
chr3_3 CDS 81799301 81799467 81799301 ID=Msa0477560-mRNA-1:cds;Parent=Msa0477560-mRNA-1
chr3_3 CDS 81799630 81799839 81799630 ID=Msa0477560-mRNA-1:cds;Parent=Msa0477560-mRNA-1
chr3_3 CDS 81800797 81800907 81800797 ID=Msa0477560-mRNA-1:cds;Parent=Msa0477560-mRNA-1
chr3_3 CDS 81801036 81801212 81801036 ID=Msa0477560-mRNA-1:cds;Parent=Msa0477560-mRNA-1
chr3_3 CDS 81802380 81802820 81802380 ID=Msa0477560-mRNA-1:cds;Parent=Msa0477560-mRNA-1
chr3_3 CDS 81803163 81803453 81803163 ID=Msa0477560-mRNA-1:cds;Parent=Msa0477560-mRNA-1
chr3_3 three_prime_UTR 81803454 81803880 81803454 ID=Msa0477560-mRNA-1:three_prime_utr;Parent=Msa0477560-mRNA-1
Gene Sequence

>Msa0477560

ATGGCTCCTGCACCACCGCAATCTAATCGATCTCCTTCGCCGTCGCAACCGTCCGGGAAGAGTGAAGTATCTGATCTAAAATTACAGCTACGGCAGCTTGCTGGGAGTCGAGCTCCGGGTACTGATGACTCTAAGAGGGATCTTTACAAGAAGGTGATATCAAACATGACTATAGGTATTGATGTTTCGTCTCTCTTTGGTGAGATGGTAATGTGTTCAGCAACATCAGACATTGTTTTGAAGAAAATGTGTTACCTGTATGTTGGAAACTATGCTAAGGTTAATCCGGATCTTGCTCTTTTGACGATTAATTTTCTTCAAAGGGATTGTAAGGATCAGGATCCGATGATCCGAGGACTGGCATTAAGGAGTTTGTGTTCACTTCGAGTGGCGAACTTGGTGGAGTATTTGGTTGGGCCTTTAGGGTCAGGGTTGAAGGATAATAATAGTTATGTCAGGACGGTGGCAGTAATCGGTGTTTTGAAACTGTATCACATATCAGCCTCCACGTGTATTGATGCAGATTTTCCAGAAACGTTGAAGCATTTGATGCTCAATGACCAGGATACTCAGGTAGTTGCAAATTGTTTGTCTGCTTTACAAGAAATTTGGACCTTAGAGTCAACCACCTCAGAGGAAGCAGCTAGGGAGAGAGAAACTCTGCATAGCAAGCCAATTGTTTATTACCTTCTGAATCGCATTAAGGAATTTAGTGAATGGGCACAATGTCTTGTGATGGAATTGGTGGCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTCCTTGAAGATAGACTACAGCATGCAAATGGTGCTGTTGTCTTGGCAACTACAAAAGTATTCCTGCACTTGACTTTATCTATGGCTGATGTACATCAGCAGGTATATGAGCGTATCAAAGCCCCTCTCTTAACTCAAGTGAGCTCAGGAAGTCCGGAACAATCTTATGCAATTCTAAGCCACCTGCATCTCTTGGTAATGCGTGCACCATATATATTTTCCTCGGACTACAAACACTTCTATTGCCAGTATAACGAGCCATCATATGTCAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTTGCAAATGAAAGTAACACCTATGAGATAGTGACAGAATTATGTGAATATGCTGCAAATGTTGACATCCCAATTGCAAGGGAATCAATTCGGGCTGTTGGAAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGGCTTCTGCAGTTTCTGGAGATGGAAAAGGACTATGTTACGTCTGAAGCTCTGGTGCTTGTGAAAGATCTTCTAAGAAAATATCCTCAATGGAGTCAAGATTGTATTGCTGTTGTAGGGAATATCAGTAGCAACAATGTCCAAGAACCTAAGGCTAAGGCAGCTCTCATATGGATGCTGGGGGAATATTCTCAAGACATGCATGATGCTCCGTATGTCTTGGAAAGTCTGGTTGAAAATTGGGACGAGGAGCATTCTGCCGAGGTTCGCTTGCATCTTCTTACTGCAGTAATGAAGTGTTTCTTTAAGAGACCCCCCGAGACTCAGAAAGCACTGGGAGCTGCACTGGCCGCTGGTCTTGCTGATTTTCACCAGGATGTTCATGATAGGGCCTTATTTTATTACAGGCTTCTACAACACAATGTATCGGTGGCTGAGAGTGTGGTGAACCCTCCAAAACAAGCAGTTTCAGTATTTGCCGATACTCAGAGCAGTGAAGTTAAAGATCGCATATTTGATGAATTTAACAGTTTGTCTGTTGTATACCAAAAGCCTTCTTACATGTTCACTGATAAGGAACACCGAGGGACATTTGAGTTTTCAGATGAACTTGGCAATCTGTCTATTAGTGCGGAATCCGGAGATTCTGTTGTTCCTGCGCAGAGAGTGGAGGCAAATGACAAGGATCTGCTTCTAAGTACCACGGAAAAAGATGATGTGAGAGATACTGGAAGCAATGGTTCTGCCTATAATGCTCCTTCCTATAATGGGTCTGCCCCTTCAGCAGCTTCACAACCGCTTGCAGATTTGGCATTTTCAAGTACCAGCACGACTAGCCAAGCATTGGCAATTGATGATCTGCTTGGTTTAGATTTTTCAGTTGGGACTGTAAGCACACCGTCACCTCCCCCGTTGACCCTCAACCCAAAAGCTGTACTGGATCCTGGCACATTTCAGCAGAAATGGCGTCAACTACCAATATCCTTATCAGAGGAATATTCTTTAAGCCCTCTTGCAATTGCATCATTGACGACTCCCAATGCACTCCTACGGCACATGCAAAGTCATTCAATACAGTGCATTGCATCCGGCGGCCAGTCTCCTAATTTCAAGTTCTTTTTCTTTGCTCAAAAAGCAGAAGAAACATCAATATATCTTGTAGAGTGTATAATCAACACATCATCCGCCAAGTCACAGATTAAAATAAAGGCTGATGACCAAAGCTCGTCACAGGCATTCTCAACATTATTCCAATCAGCTTTGTCCAAATTTGGTTTGCCCTGA
Protein sequence

>Msa0477560

MAPAPPQSNRSPSPSQPSGKSEVSDLKLQLRQLAGSRAPGTDDSKRDLYKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDQDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRTVAVIGVLKLYHISASTCIDADFPETLKHLMLNDQDTQVVANCLSALQEIWTLESTTSEEAARERETLHSKPIVYYLLNRIKEFSEWAQCLVMELVAKYIPSDNSEIFDIMNLLEDRLQHANGAVVLATTKVFLHLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAILSHLHLLVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSNNVQEPKAKAALIWMLGEYSQDMHDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGLADFHQDVHDRALFYYRLLQHNVSVAESVVNPPKQAVSVFADTQSSEVKDRIFDEFNSLSVVYQKPSYMFTDKEHRGTFEFSDELGNLSISAESGDSVVPAQRVEANDKDLLLSTTEKDDVRDTGSNGSAYNAPSYNGSAPSAASQPLADLAFSSTSTTSQALAIDDLLGLDFSVGTVSTPSPPPLTLNPKAVLDPGTFQQKWRQLPISLSEEYSLSPLAIASLTTPNALLRHMQSHSIQCIASGGQSPNFKFFFFAQKAEETSIYLVECIINTSSAKSQIKIKADDQSSSQAFSTLFQSALSKFGLP*