Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661670 | XP_013462297.1 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 735 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661670 | sp|Q8LAH7|OPR1_ARATH | 68.579 | 366 | 110 | 1 | 10 | 370 | 5 | 370 | 0.0 | 535 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661670 | A0A072V3D1 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 735 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0661670 | Msa0871420 | 0.813774 | 2.159342e-51 | -8.615850e-47 |
| Msa0661670 | Msa0936630 | 0.801319 | 9.523751e-49 | -8.615850e-47 |
| Msa0661670 | Msa1040330 | 0.806891 | 6.599697e-50 | -8.615850e-47 |
| Msa0661670 | Msa1085820 | 0.802390 | 5.738756e-49 | -8.615850e-47 |
| Msa0661670 | Msa1173540 | 0.914411 | 1.979040e-84 | -8.615850e-47 |
| Msa0661670 | Msa1265570 | 0.802659 | 5.051472e-49 | -8.615850e-47 |
| Msa0661670 | Msa1334670 | 0.804051 | 2.600565e-49 | -8.615850e-47 |
| Msa0661670 | Msa1437590 | 0.807480 | 4.952042e-50 | -8.615850e-47 |
| Msa0136090 | Msa0661670 | 0.818696 | 1.713141e-52 | -8.615850e-47 |
| Msa0186270 | Msa0661670 | 0.956859 | 1.087583e-114 | -8.615850e-47 |
| Msa0387340 | Msa0661670 | 0.923354 | 2.965975e-89 | -8.615850e-47 |
| Msa0524710 | Msa0661670 | 0.806950 | 6.414212e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661670 | MtrunA17_Chr3g0144001 | 96.703 | 364 | 11 | 1 | 10 | 372 | 3 | 366 | 0.0 | 735 |
| Msa0661670 | MtrunA17_Chr5g0394891 | 70.219 | 366 | 104 | 1 | 9 | 369 | 4 | 369 | 0.0 | 554 |
| Msa0661670 | MtrunA17_Chr5g0394771 | 70.704 | 355 | 103 | 1 | 15 | 369 | 38 | 391 | 0.0 | 543 |
| Msa0661670 | MtrunA17_Chr5g0394861 | 69.337 | 362 | 104 | 2 | 15 | 369 | 10 | 371 | 0.0 | 532 |
| Msa0661670 | MtrunA17_Chr5g0395841 | 67.409 | 359 | 112 | 1 | 15 | 368 | 12 | 370 | 0.0 | 530 |
| Msa0661670 | MtrunA17_Chr5g0394751 | 69.296 | 355 | 108 | 1 | 15 | 369 | 6 | 359 | 0.0 | 529 |
| Msa0661670 | MtrunA17_Chr5g0394841 | 67.403 | 362 | 111 | 2 | 15 | 369 | 10 | 371 | 0.0 | 524 |
| Msa0661670 | MtrunA17_Chr5g0394811 | 66.111 | 360 | 117 | 2 | 15 | 369 | 119 | 478 | 0.0 | 513 |
| Msa0661670 | MtrunA17_Chr5g0394811 | 79.208 | 101 | 21 | 0 | 23 | 123 | 1 | 101 | 8.13e-51 | 176 |
| Msa0661670 | MtrunA17_Chr4g0070561 | 53.243 | 370 | 155 | 5 | 17 | 368 | 19 | 388 | 4.10e-137 | 396 |
| Msa0661670 | MtrunA17_Chr5g0394791 | 64.072 | 167 | 49 | 2 | 15 | 176 | 9 | 169 | 7.36e-71 | 220 |
| Msa0661670 | MtrunA17_Chr5g0394801 | 53.723 | 188 | 60 | 1 | 174 | 361 | 25 | 185 | 1.46e-65 | 208 |
| Msa0661670 | MtrunA17_Chr3g0130471 | 72.093 | 43 | 12 | 0 | 194 | 236 | 1 | 43 | 4.88e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661670 | AT1G76680.1 | 68.579 | 366 | 110 | 1 | 10 | 370 | 5 | 370 | 0.0 | 535 |
| Msa0661670 | AT1G76690.1 | 67.486 | 366 | 114 | 1 | 10 | 370 | 7 | 372 | 0.0 | 533 |
| Msa0661670 | AT1G76680.2 | 64.194 | 391 | 110 | 2 | 10 | 370 | 5 | 395 | 0.0 | 520 |
| Msa0661670 | AT1G09400.1 | 65.846 | 325 | 110 | 1 | 23 | 347 | 1 | 324 | 1.75e-163 | 461 |
| Msa0661670 | AT2G06050.2 | 52.406 | 374 | 156 | 4 | 17 | 368 | 12 | 385 | 1.18e-136 | 395 |
| Msa0661670 | AT2G06050.1 | 52.406 | 374 | 156 | 4 | 17 | 368 | 12 | 385 | 1.18e-136 | 395 |
| Msa0661670 | AT2G06050.3 | 52.406 | 374 | 156 | 4 | 17 | 368 | 12 | 385 | 1.18e-136 | 395 |
| Msa0661670 | AT1G09400.2 | 66.792 | 265 | 87 | 1 | 83 | 347 | 2 | 265 | 3.86e-133 | 381 |
| Msa0661670 | AT1G17990.1 | 65.251 | 259 | 88 | 2 | 9 | 266 | 1 | 258 | 2.85e-128 | 369 |
| Msa0661670 | AT1G18020.1 | 65.251 | 259 | 88 | 2 | 9 | 266 | 1 | 258 | 2.85e-128 | 369 |
| Msa0661670 | AT1G17990.2 | 62.548 | 259 | 87 | 3 | 9 | 266 | 1 | 250 | 1.36e-119 | 347 |
Find 99 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCAAATACCAGGTGTATT+TGG | 0.127154 | 4_3:-73144488 | None:intergenic |
| CTGAAGTCATTGACAACTTT+TGG | 0.134544 | 4_3:-73145420 | None:intergenic |
| AAGGACCTTGTTCTTGTTAA+AGG | 0.178211 | 4_3:-73143882 | None:intergenic |
| TGTCGTTCACTTTGTCCTTT+AGG | 0.228951 | 4_3:-73145852 | None:intergenic |
| ACCCAAATACACCTGGTATT+TGG | 0.251049 | 4_3:+73144486 | Msa0661670:CDS |
| GATCTTTCTCATGGGCATTA+AGG | 0.258096 | 4_3:-73146136 | None:intergenic |
| CTAATAATTACCTGCTTCTA+TGG | 0.268887 | 4_3:-73145460 | None:intergenic |
| CCATCCAACTCAAATCTTCT+AGG | 0.299535 | 4_3:-73146279 | None:intergenic |
| TTCTTGATTGGGGAAGCCTC+AGG | 0.303380 | 4_3:+73143966 | Msa0661670:CDS |
| TCCAATCTCAAGCACAAATA+AGG | 0.308704 | 4_3:+73145332 | Msa0661670:CDS |
| GGTGCGGATTTGGTAGCTTA+TGG | 0.322401 | 4_3:+73146228 | Msa0661670:CDS |
| TACCAAATCCGCACCATTGC+TGG | 0.328132 | 4_3:-73146220 | None:intergenic |
| CAAAGGGTGGCTTCTTGATT+GGG | 0.332102 | 4_3:+73143955 | Msa0661670:CDS |
| ACAAAGGGTGGCTTCTTGAT+TGG | 0.332916 | 4_3:+73143954 | Msa0661670:CDS |
| AATGGAACATTTATTGTTGC+TGG | 0.345581 | 4_3:+73146162 | Msa0661670:CDS |
| TCCAAATACCAGGTGTATTT+GGG | 0.345635 | 4_3:-73144487 | None:intergenic |
| TCTTATCAGCCTTGTTCAAT+TGG | 0.354556 | 4_3:-73146302 | None:intergenic |
| GCTAAGTCATTAAGTGAATT+AGG | 0.356165 | 4_3:+73146045 | Msa0661670:CDS |
| GCCTTATTTGTGCTTGAGAT+TGG | 0.359941 | 4_3:-73145333 | None:intergenic |
| GGCCAGCAATGGTGCGGATT+TGG | 0.384528 | 4_3:+73146218 | Msa0661670:CDS |
| TACACCAATGATCCTGTTGT+TGG | 0.393076 | 4_3:+73146333 | Msa0661670:CDS |
| GAGATTGGAGGCTGTCCATC+TGG | 0.397247 | 4_3:-73145318 | None:intergenic |
| TCAAATCTTCTAGGAAGATC+TGG | 0.403955 | 4_3:-73146270 | None:intergenic |
| GACTCTAACCCTCATGCTTT+AGG | 0.410599 | 4_3:+73146012 | Msa0661670:CDS |
| TTGTTGCTGGTGGATACAAT+AGG | 0.419806 | 4_3:+73146175 | Msa0661670:CDS |
| CATGGGCATTAAGGACTCAT+TGG | 0.438978 | 4_3:-73146127 | None:intergenic |
| GTGGAGATACATGGAGCTAA+TGG | 0.442093 | 4_3:+73145811 | Msa0661670:CDS |
| AAAGCAGTTGTTGATGAGAT+TGG | 0.442364 | 4_3:+73145934 | Msa0661670:CDS |
| TCTTGATTGGGGAAGCCTCA+GGG | 0.444023 | 4_3:+73143967 | Msa0661670:CDS |
| GAGAATAAGAAAGTGGTTGA+AGG | 0.446077 | 4_3:+73143669 | Msa0661670:CDS |
| CCATGTTGTATGGGGTGAGA+AGG | 0.460955 | 4_3:-73143707 | None:intergenic |
| ATATCCAACAACAGGATCAT+TGG | 0.464074 | 4_3:-73146337 | None:intergenic |
| TTATTTGTGCTTGAGATTGG+AGG | 0.468685 | 4_3:-73145330 | None:intergenic |
| GCTGGAAGAGTGTCCAACTA+TGG | 0.469322 | 4_3:+73144593 | Msa0661670:CDS |
| GTTGGAGCTGTTCATGAGAA+AGG | 0.473716 | 4_3:+73144542 | Msa0661670:CDS |
| TCATGAACAGCTCCAACAAT+GGG | 0.476202 | 4_3:-73144536 | None:intergenic |
| TCAAACATGGTGCACATCCC+AGG | 0.477008 | 4_3:-73146093 | None:intergenic |
| TGGTATTTGGACAAGAGAAC+AGG | 0.484243 | 4_3:+73144499 | Msa0661670:CDS |
| CTTGCTTGATCAATTCCTAA+AGG | 0.484914 | 4_3:+73145837 | Msa0661670:CDS |
| TATTCTCAACGAACAACAAA+GGG | 0.489010 | 4_3:+73143939 | Msa0661670:CDS |
| TATTGTCATGTCATTGAACC+TGG | 0.489334 | 4_3:+73146075 | Msa0661670:CDS |
| CTCATGAACAGCTCCAACAA+TGG | 0.489730 | 4_3:-73144537 | None:intergenic |
| TCCATTGAAGATCTTTCTCA+TGG | 0.490323 | 4_3:-73146145 | None:intergenic |
| CCCATGAGAAAGATCTTCAA+TGG | 0.491062 | 4_3:+73146144 | Msa0661670:CDS |
| GAAGCATGGAAACCCATTGT+TGG | 0.493765 | 4_3:+73144524 | Msa0661670:CDS |
| GTTGTGAGACGTCGAGGAGG+TGG | 0.497052 | 4_3:-73145387 | None:intergenic |
| CATGTTGTATGGGGTGAGAA+GGG | 0.498945 | 4_3:-73143706 | None:intergenic |
| TAATCAGTATATCCAACAAC+AGG | 0.503211 | 4_3:-73146345 | None:intergenic |
| CCTAGAAGATTTGAGTTGGA+TGG | 0.507273 | 4_3:+73146279 | Msa0661670:CDS |
| CTAAAACCAGATACCATAGT+TGG | 0.509794 | 4_3:-73144606 | None:intergenic |
| GGAAGAAGAGAATAAGAAAG+TGG | 0.510295 | 4_3:+73143662 | Msa0661670:CDS |
| TCTTCCTAGAAGATTTGAGT+TGG | 0.518058 | 4_3:+73146275 | Msa0661670:CDS |
| TTTGATGGAGTGGAGATACA+TGG | 0.518838 | 4_3:+73145802 | Msa0661670:CDS |
| CATTCACAATAATCAGCATA+AGG | 0.519406 | 4_3:-73145985 | None:intergenic |
| CCTTCTCACCCCATACAACA+TGG | 0.541714 | 4_3:+73143707 | Msa0661670:CDS |
| CTTGATTGGGGAAGCCTCAG+GGG | 0.545878 | 4_3:+73143968 | Msa0661670:CDS |
| CGGATTTGGTAGCTTATGGA+AGG | 0.547082 | 4_3:+73146232 | Msa0661670:CDS |
| AACGACAGAGATGATGAGTA+TGG | 0.548461 | 4_3:+73145868 | Msa0661670:CDS |
| CCATTGAAGATCTTTCTCAT+GGG | 0.558552 | 4_3:-73146144 | None:intergenic |
| GGAACATTTATTGTTGCTGG+TGG | 0.563883 | 4_3:+73146165 | Msa0661670:CDS |
| GAAAATTCAATCTGTCCCAC+AGG | 0.576865 | 4_3:+73143730 | Msa0661670:CDS |
| AAAGGGTGGCTTCTTGATTG+GGG | 0.577699 | 4_3:+73143956 | Msa0661670:CDS |
| TCGTTGTCGCTTCCCTCTAG+AGG | 0.579003 | 4_3:+73145906 | Msa0661670:CDS |
| TTATTCTCAACGAACAACAA+AGG | 0.581092 | 4_3:+73143938 | Msa0661670:CDS |
| TATGCTGATTATTGTGAATG+TGG | 0.581554 | 4_3:+73145988 | Msa0661670:CDS |
| ACTGCTTTCACAACCTCTAG+AGG | 0.583197 | 4_3:-73145919 | None:intergenic |
| AACAATGTGTTGGCCAGCAA+TGG | 0.583715 | 4_3:+73146207 | Msa0661670:CDS |
| TGAACAGGTTACCAACCAGA+TGG | 0.587082 | 4_3:+73145303 | Msa0661670:intron |
| CAAGAGAACAGGTTGAAGCA+TGG | 0.588798 | 4_3:+73144510 | Msa0661670:CDS |
| TGTTCTCTTGTCCAAATACC+AGG | 0.590107 | 4_3:-73144497 | None:intergenic |
| AGTTGTCAATGACTTCAGAA+TGG | 0.592608 | 4_3:+73145425 | Msa0661670:CDS |
| GGTGGATACAATAGGACTGA+AGG | 0.596483 | 4_3:+73146183 | Msa0661670:CDS |
| GGGGTCTCAGACACTGCACA+AGG | 0.597651 | 4_3:+73143987 | Msa0661670:CDS |
| TTGGAGGCTGTCCATCTGGT+TGG | 0.600157 | 4_3:-73145314 | None:intergenic |
| TTGTGAGACGTCGAGGAGGT+GGG | 0.604708 | 4_3:-73145386 | None:intergenic |
| TGGTTGAGCAACGAAATTGA+AGG | 0.607262 | 4_3:-73143901 | None:intergenic |
| GACTGAAGGAAACAATGTGT+TGG | 0.609986 | 4_3:+73146197 | Msa0661670:CDS |
| ACAGAGATGATGAGTATGGT+GGG | 0.612337 | 4_3:+73145872 | Msa0661670:CDS |
| ATGTAGATGCCTAAAGCATG+AGG | 0.612576 | 4_3:-73146021 | None:intergenic |
| TCATGCTTTAGGCATCTACA+TGG | 0.616635 | 4_3:+73146023 | Msa0661670:CDS |
| GAGATTGGAGCTGACAAAGT+TGG | 0.616749 | 4_3:+73145949 | Msa0661670:CDS |
| CTGCTTTCACAACCTCTAGA+GGG | 0.620027 | 4_3:-73145918 | None:intergenic |
| GACAGAGATGATGAGTATGG+TGG | 0.624080 | 4_3:+73145871 | Msa0661670:CDS |
| TCATCGGTTGTGAGACGTCG+AGG | 0.630333 | 4_3:-73145393 | None:intergenic |
| GTTGGATGGCCAATTGAACA+AGG | 0.634338 | 4_3:+73146293 | Msa0661670:CDS |
| ATGTTGTATGGGGTGAGAAG+GGG | 0.635447 | 4_3:-73143705 | None:intergenic |
| ATTGTCATGTCATTGAACCT+GGG | 0.637262 | 4_3:+73146076 | Msa0661670:CDS |
| TTGCACCTTTAACAAGAACA+AGG | 0.637602 | 4_3:+73143877 | Msa0661670:CDS |
| TCTCAACGAACAACAAAGGG+TGG | 0.642936 | 4_3:+73143942 | Msa0661670:CDS |
| AATAAGGCACTACAAAAGCA+AGG | 0.645729 | 4_3:+73145348 | Msa0661670:CDS |
| TGAAGGTACCCAAATACACC+TGG | 0.648170 | 4_3:+73144479 | Msa0661670:intron |
| TGCAGTGTCTGAGACCCCTG+AGG | 0.651692 | 4_3:-73143982 | None:intergenic |
| CTTCTCACCCCATACAACAT+GGG | 0.659177 | 4_3:+73143708 | Msa0661670:CDS |
| GGAGCTGTTCATGAGAAAGG+AGG | 0.677401 | 4_3:+73144545 | Msa0661670:CDS |
| TGTAGATGCCTAAAGCATGA+GGG | 0.695124 | 4_3:-73146020 | None:intergenic |
| TGTGTTGGCCAGCAATGGTG+CGG | 0.698432 | 4_3:+73146212 | Msa0661670:CDS |
| GAATAATAAAGAGCAGCATG+TGG | 0.702052 | 4_3:-73143921 | None:intergenic |
| TCGGTTGTGAGACGTCGAGG+AGG | 0.709608 | 4_3:-73145390 | None:intergenic |
| GGGTCTCAGACACTGCACAA+GGG | 0.738404 | 4_3:+73143988 | Msa0661670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTTTTTTAAAACTAAT+GGG | - | chr4_3:73144712-73144731 | None:intergenic | 10.0% |
| !!! | AAAGATTTTTTTAAAACTAA+TGG | - | chr4_3:73144713-73144732 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTAAAAAAATCTT+TGG | + | chr4_3:73144712-73144731 | Msa0661670:intron | 10.0% |
| !!! | TTAGTTTTAAAAAAATCTTT+GGG | + | chr4_3:73144713-73144732 | Msa0661670:intron | 10.0% |
| !!! | TTACTTTTTAAAAAATCTTT+GGG | - | chr4_3:73144973-73144992 | None:intergenic | 10.0% |
| !!! | ATTACTTTTTAAAAAATCTT+TGG | - | chr4_3:73144974-73144993 | None:intergenic | 10.0% |
| !!! | AAAGATTTTTTAAAAAGTAA+TGG | + | chr4_3:73144973-73144992 | Msa0661670:intron | 10.0% |
| !!! | AAGATTTTTTAAAAAGTAAT+GGG | + | chr4_3:73144974-73144993 | Msa0661670:intron | 10.0% |
| !! | TATAAAACTAAAATAAATAC+AGG | + | chr4_3:73145778-73145797 | Msa0661670:intron | 10.0% |
| !! | TAAATAAATTATTTACCTGT+GGG | - | chr4_3:73143748-73143767 | None:intergenic | 15.0% |
| !!! | AAATAACAACTCTATTTTTT+TGG | + | chr4_3:73144080-73144099 | Msa0661670:intron | 15.0% |
| !!! | AATAACAACTCTATTTTTTT+GGG | + | chr4_3:73144081-73144100 | Msa0661670:intron | 15.0% |
| !!! | ATTGTAAAAATGTTTTTTGT+AGG | - | chr4_3:73144157-73144176 | None:intergenic | 15.0% |
| !!! | TACAAAAAACATTTTTACAA+TGG | + | chr4_3:73144156-73144175 | Msa0661670:intron | 15.0% |
| !!! | ACAAATTTTATTGTTAACAT+TGG | - | chr4_3:73144316-73144335 | None:intergenic | 15.0% |
| !!! | TGTGTTTTATTACATTAAAA+TGG | + | chr4_3:73145074-73145093 | Msa0661670:intron | 15.0% |
| !!! | GTGTTTTATTACATTAAAAT+GGG | + | chr4_3:73145075-73145094 | Msa0661670:intron | 15.0% |
| !! | TTCTTAGATAAAATAATTCT+TGG | + | chr4_3:73145198-73145217 | Msa0661670:intron | 15.0% |
| !! | TGCAATATCAATTTATTATT+TGG | + | chr4_3:73145483-73145502 | Msa0661670:intron | 15.0% |
| !! | CTAAATAAATTATTTACCTG+TGG | - | chr4_3:73143749-73143768 | None:intergenic | 20.0% |
| !! | ACAATGAATAGTTACAATAT+AGG | - | chr4_3:73144380-73144399 | None:intergenic | 20.0% |
| !! | TATTAAAAGACGAATTGTTT+AGG | + | chr4_3:73144756-73144775 | Msa0661670:intron | 20.0% |
| !! | ACTAAACAATTTACTTCAAA+TGG | + | chr4_3:73145149-73145168 | Msa0661670:intron | 20.0% |
| !! | ATAAAATTGTAATATCATGC+AGG | + | chr4_3:73145577-73145596 | Msa0661670:intron | 20.0% |
| !! | TAAAATTGTAATATCATGCA+GGG | + | chr4_3:73145578-73145597 | Msa0661670:intron | 20.0% |
| !!! | AAAATAAATACAGGTTTTGA+TGG | + | chr4_3:73145787-73145806 | Msa0661670:intron | 20.0% |
| !! | CCATCAAATAATCTAAAGTT+CGG | - | chr4_3:73144841-73144860 | None:intergenic | 25.0% |
| ! | TGGTTAATAAACTAAGAACT+CGG | + | chr4_3:73145169-73145188 | Msa0661670:intron | 25.0% |
| ! | AACGTTCTATCGATATATAT+AGG | - | chr4_3:73145281-73145300 | None:intergenic | 25.0% |
| ! | TGAATTTTCCCATGTTGTAT+GGG | - | chr4_3:73143719-73143738 | None:intergenic | 30.0% |
| ! | TTGAATTTTCCCATGTTGTA+TGG | - | chr4_3:73143720-73143739 | None:intergenic | 30.0% |
| AGTTCAATTCAATGTGATGA+GGG | - | chr4_3:73143783-73143802 | None:intergenic | 30.0% | |
| AAGTTCAATTCAATGTGATG+AGG | - | chr4_3:73143784-73143803 | None:intergenic | 30.0% | |
| !! | TTTTGTGTGTGTGTCTTATT+AGG | + | chr4_3:73143847-73143866 | Msa0661670:intron | 30.0% |
| TTATTCTCAACGAACAACAA+AGG | + | chr4_3:73143938-73143957 | Msa0661670:CDS | 30.0% | |
| TATTCTCAACGAACAACAAA+GGG | + | chr4_3:73143939-73143958 | Msa0661670:CDS | 30.0% | |
| TGAGCTTGAGAACAAAAATA+GGG | - | chr4_3:73144025-73144044 | None:intergenic | 30.0% | |
| ATGAGCTTGAGAACAAAAAT+AGG | - | chr4_3:73144026-73144045 | None:intergenic | 30.0% | |
| GTGTATATGTATGTAATGAC+TGG | + | chr4_3:73144180-73144199 | Msa0661670:intron | 30.0% | |
| TTAGATCAAATGAGATGCAA+TGG | + | chr4_3:73144279-73144298 | Msa0661670:intron | 30.0% | |
| !! | TCTCAATGTTTTTGAATCCT+TGG | + | chr4_3:73144452-73144471 | Msa0661670:intron | 30.0% |
| ! | TTTGAATCCTTGGTAATTGA+AGG | + | chr4_3:73144462-73144481 | Msa0661670:intron | 30.0% |
| GTTTATGTTATAATTTCCCC+TGG | + | chr4_3:73144647-73144666 | Msa0661670:intron | 30.0% | |
| ! | CGAATTGTTTAGGAGAATTT+TGG | + | chr4_3:73144766-73144785 | Msa0661670:intron | 30.0% |
| AAAAACTGATGACACAAACA+AGG | - | chr4_3:73144794-73144813 | None:intergenic | 30.0% | |
| CCGAACTTTAGATTATTTGA+TGG | + | chr4_3:73144838-73144857 | Msa0661670:intron | 30.0% | |
| ! | TGAAGTCATTGACAACTTTT+GGG | - | chr4_3:73145422-73145441 | None:intergenic | 30.0% |
| CTAATAATTACCTGCTTCTA+TGG | - | chr4_3:73145463-73145482 | None:intergenic | 30.0% | |
| CTCTAGTGTAATCTAATTAG+AGG | - | chr4_3:73145614-73145633 | None:intergenic | 30.0% | |
| CATTCACAATAATCAGCATA+AGG | - | chr4_3:73145988-73146007 | None:intergenic | 30.0% | |
| ! | TATGCTGATTATTGTGAATG+TGG | + | chr4_3:73145988-73146007 | Msa0661670:CDS | 30.0% |
| GCTAAGTCATTAAGTGAATT+AGG | + | chr4_3:73146045-73146064 | Msa0661670:CDS | 30.0% | |
| AATGGAACATTTATTGTTGC+TGG | + | chr4_3:73146162-73146181 | Msa0661670:CDS | 30.0% | |
| TAATCAGTATATCCAACAAC+AGG | - | chr4_3:73146348-73146367 | None:intergenic | 30.0% | |
| !! | CTAGTAGCATTTTCAAGAAA+TGG | - | chr4_3:73146372-73146391 | None:intergenic | 30.0% |
| GGAAGAAGAGAATAAGAAAG+TGG | + | chr4_3:73143662-73143681 | Msa0661670:CDS | 35.0% | |
| GAGAATAAGAAAGTGGTTGA+AGG | + | chr4_3:73143669-73143688 | Msa0661670:CDS | 35.0% | |
| ! | GAATTTTCCCATGTTGTATG+GGG | - | chr4_3:73143718-73143737 | None:intergenic | 35.0% |
| TTGCACCTTTAACAAGAACA+AGG | + | chr4_3:73143877-73143896 | Msa0661670:CDS | 35.0% | |
| AAGGACCTTGTTCTTGTTAA+AGG | - | chr4_3:73143885-73143904 | None:intergenic | 35.0% | |
| GAATAATAAAGAGCAGCATG+TGG | - | chr4_3:73143924-73143943 | None:intergenic | 35.0% | |
| GAGAACAAAAATAGGGTAGT+TGG | - | chr4_3:73144018-73144037 | None:intergenic | 35.0% | |
| TCCAAATACCAGGTGTATTT+GGG | - | chr4_3:73144490-73144509 | None:intergenic | 35.0% | |
| ! | GCATATTCTTTTGTCAGCTT+TGG | + | chr4_3:73144567-73144586 | Msa0661670:CDS | 35.0% |
| CTAAAACCAGATACCATAGT+TGG | - | chr4_3:73144609-73144628 | None:intergenic | 35.0% | |
| TACTTGCGTTAGACAATTCT+TGG | - | chr4_3:73144893-73144912 | None:intergenic | 35.0% | |
| AGAATTGTCTAACGCAAGTA+AGG | + | chr4_3:73144893-73144912 | Msa0661670:intron | 35.0% | |
| ! | TCGATAGAACGTTTTTGAAC+AGG | + | chr4_3:73145288-73145307 | Msa0661670:intron | 35.0% |
| TTATTTGTGCTTGAGATTGG+AGG | - | chr4_3:73145333-73145352 | None:intergenic | 35.0% | |
| TCCAATCTCAAGCACAAATA+AGG | + | chr4_3:73145332-73145351 | Msa0661670:CDS | 35.0% | |
| ! | AATAAGGCACTACAAAAGCA+AGG | + | chr4_3:73145348-73145367 | Msa0661670:CDS | 35.0% |
| !!! | GACAACTTTTGGGATTTCAT+CGG | - | chr4_3:73145412-73145431 | None:intergenic | 35.0% |
| ! | CTGAAGTCATTGACAACTTT+TGG | - | chr4_3:73145423-73145442 | None:intergenic | 35.0% |
| AGTTGTCAATGACTTCAGAA+TGG | + | chr4_3:73145425-73145444 | Msa0661670:CDS | 35.0% | |
| ACATCATTGCTATGTATGCA+GGG | - | chr4_3:73145642-73145661 | None:intergenic | 35.0% | |
| !! | AAATACAGGTTTTGATGGAG+TGG | + | chr4_3:73145792-73145811 | Msa0661670:intron | 35.0% |
| CTTGCTTGATCAATTCCTAA+AGG | + | chr4_3:73145837-73145856 | Msa0661670:CDS | 35.0% | |
| ! | AAAGCAGTTGTTGATGAGAT+TGG | + | chr4_3:73145934-73145953 | Msa0661670:CDS | 35.0% |
| TATTGTCATGTCATTGAACC+TGG | + | chr4_3:73146075-73146094 | Msa0661670:CDS | 35.0% | |
| ATTGTCATGTCATTGAACCT+GGG | + | chr4_3:73146076-73146095 | Msa0661670:CDS | 35.0% | |
| !! | GGTGTCACATTTTTCAAACA+TGG | - | chr4_3:73146109-73146128 | None:intergenic | 35.0% |
| CCATTGAAGATCTTTCTCAT+GGG | - | chr4_3:73146147-73146166 | None:intergenic | 35.0% | |
| TCCATTGAAGATCTTTCTCA+TGG | - | chr4_3:73146148-73146167 | None:intergenic | 35.0% | |
| ! | TCAAATCTTCTAGGAAGATC+TGG | - | chr4_3:73146273-73146292 | None:intergenic | 35.0% |
| TCTTCCTAGAAGATTTGAGT+TGG | + | chr4_3:73146275-73146294 | Msa0661670:CDS | 35.0% | |
| !! | TCTTATCAGCCTTGTTCAAT+TGG | - | chr4_3:73146305-73146324 | None:intergenic | 35.0% |
| ATATCCAACAACAGGATCAT+TGG | - | chr4_3:73146340-73146359 | None:intergenic | 35.0% | |
| GAAAATTCAATCTGTCCCAC+AGG | + | chr4_3:73143730-73143749 | Msa0661670:CDS | 40.0% | |
| ATTCAATGTGATGAGGGTCT+AGG | - | chr4_3:73143777-73143796 | None:intergenic | 40.0% | |
| TGGTTGAGCAACGAAATTGA+AGG | - | chr4_3:73143904-73143923 | None:intergenic | 40.0% | |
| TTGGGTACCTTCAATTACCA+AGG | - | chr4_3:73144472-73144491 | None:intergenic | 40.0% | |
| ACCCAAATACACCTGGTATT+TGG | + | chr4_3:73144486-73144505 | Msa0661670:CDS | 40.0% | |
| GTCCAAATACCAGGTGTATT+TGG | - | chr4_3:73144491-73144510 | None:intergenic | 40.0% | |
| TGTTCTCTTGTCCAAATACC+AGG | - | chr4_3:73144500-73144519 | None:intergenic | 40.0% | |
| TGGTATTTGGACAAGAGAAC+AGG | + | chr4_3:73144499-73144518 | Msa0661670:CDS | 40.0% | |
| TCATGAACAGCTCCAACAAT+GGG | - | chr4_3:73144539-73144558 | None:intergenic | 40.0% | |
| !! | CCGTATTGTTTCTAATCCAG+GGG | - | chr4_3:73144666-73144685 | None:intergenic | 40.0% |
| ! | CCCCTGGATTAGAAACAATA+CGG | + | chr4_3:73144663-73144682 | Msa0661670:intron | 40.0% |
| !! | CCCGTATTGTTTCTAATCCA+GGG | - | chr4_3:73144667-73144686 | None:intergenic | 40.0% |
| ! | CCCTGGATTAGAAACAATAC+GGG | + | chr4_3:73144664-73144683 | Msa0661670:intron | 40.0% |
| GTCAGATTTCGCTTATCATG+TGG | + | chr4_3:73144815-73144834 | Msa0661670:intron | 40.0% | |
| !! | GCCTTATTTGTGCTTGAGAT+TGG | - | chr4_3:73145336-73145355 | None:intergenic | 40.0% |
| ! | ACCTGCTTCTATGGCATTTT+TGG | - | chr4_3:73145454-73145473 | None:intergenic | 40.0% |
| CACATCATTGCTATGTATGC+AGG | - | chr4_3:73145643-73145662 | None:intergenic | 40.0% | |
| TTTGATGGAGTGGAGATACA+TGG | + | chr4_3:73145802-73145821 | Msa0661670:CDS | 40.0% | |
| TGTCGTTCACTTTGTCCTTT+AGG | - | chr4_3:73145855-73145874 | None:intergenic | 40.0% | |
| AACGACAGAGATGATGAGTA+TGG | + | chr4_3:73145868-73145887 | Msa0661670:CDS | 40.0% | |
| ACAGAGATGATGAGTATGGT+GGG | + | chr4_3:73145872-73145891 | Msa0661670:CDS | 40.0% | |
| TGTAGATGCCTAAAGCATGA+GGG | - | chr4_3:73146023-73146042 | None:intergenic | 40.0% | |
| ATGTAGATGCCTAAAGCATG+AGG | - | chr4_3:73146024-73146043 | None:intergenic | 40.0% | |
| ! | TCATGCTTTAGGCATCTACA+TGG | + | chr4_3:73146023-73146042 | Msa0661670:CDS | 40.0% |
| GATCTTTCTCATGGGCATTA+AGG | - | chr4_3:73146139-73146158 | None:intergenic | 40.0% | |
| CCCATGAGAAAGATCTTCAA+TGG | + | chr4_3:73146144-73146163 | Msa0661670:CDS | 40.0% | |
| GGAACATTTATTGTTGCTGG+TGG | + | chr4_3:73146165-73146184 | Msa0661670:CDS | 40.0% | |
| ! | TTGTTGCTGGTGGATACAAT+AGG | + | chr4_3:73146175-73146194 | Msa0661670:CDS | 40.0% |
| GACTGAAGGAAACAATGTGT+TGG | + | chr4_3:73146197-73146216 | Msa0661670:CDS | 40.0% | |
| ! | AGCTTATGGAAGGCTCTTTT+TGG | + | chr4_3:73146242-73146261 | Msa0661670:CDS | 40.0% |
| CCATCCAACTCAAATCTTCT+AGG | - | chr4_3:73146282-73146301 | None:intergenic | 40.0% | |
| !! | CCTAGAAGATTTGAGTTGGA+TGG | + | chr4_3:73146279-73146298 | Msa0661670:CDS | 40.0% |
| TACACCAATGATCCTGTTGT+TGG | + | chr4_3:73146333-73146352 | Msa0661670:CDS | 40.0% | |
| ATGTTGTATGGGGTGAGAAG+GGG | - | chr4_3:73143708-73143727 | None:intergenic | 45.0% | |
| CATGTTGTATGGGGTGAGAA+GGG | - | chr4_3:73143709-73143728 | None:intergenic | 45.0% | |
| CTTCTCACCCCATACAACAT+GGG | + | chr4_3:73143708-73143727 | Msa0661670:CDS | 45.0% | |
| TCTCAACGAACAACAAAGGG+TGG | + | chr4_3:73143942-73143961 | Msa0661670:CDS | 45.0% | |
| ACAAAGGGTGGCTTCTTGAT+TGG | + | chr4_3:73143954-73143973 | Msa0661670:CDS | 45.0% | |
| CAAAGGGTGGCTTCTTGATT+GGG | + | chr4_3:73143955-73143974 | Msa0661670:CDS | 45.0% | |
| AAAGGGTGGCTTCTTGATTG+GGG | + | chr4_3:73143956-73143975 | Msa0661670:CDS | 45.0% | |
| !! | TGAAGGTACCCAAATACACC+TGG | + | chr4_3:73144479-73144498 | Msa0661670:intron | 45.0% |
| ! | CAAGAGAACAGGTTGAAGCA+TGG | + | chr4_3:73144510-73144529 | Msa0661670:CDS | 45.0% |
| GAAGCATGGAAACCCATTGT+TGG | + | chr4_3:73144524-73144543 | Msa0661670:CDS | 45.0% | |
| CTCATGAACAGCTCCAACAA+TGG | - | chr4_3:73144540-73144559 | None:intergenic | 45.0% | |
| GTTGGAGCTGTTCATGAGAA+AGG | + | chr4_3:73144542-73144561 | Msa0661670:CDS | 45.0% | |
| GAGTGTCCAACTATGGTATC+TGG | + | chr4_3:73144600-73144619 | Msa0661670:intron | 45.0% | |
| !! | GCCCGTATTGTTTCTAATCC+AGG | - | chr4_3:73144668-73144687 | None:intergenic | 45.0% |
| TGAACAGGTTACCAACCAGA+TGG | + | chr4_3:73145303-73145322 | Msa0661670:intron | 45.0% | |
| GCCAAAAATGCCATAGAAGC+AGG | + | chr4_3:73145450-73145469 | Msa0661670:CDS | 45.0% | |
| GTGGAGATACATGGAGCTAA+TGG | + | chr4_3:73145811-73145830 | Msa0661670:CDS | 45.0% | |
| GACAGAGATGATGAGTATGG+TGG | + | chr4_3:73145871-73145890 | Msa0661670:CDS | 45.0% | |
| CTGCTTTCACAACCTCTAGA+GGG | - | chr4_3:73145921-73145940 | None:intergenic | 45.0% | |
| ACTGCTTTCACAACCTCTAG+AGG | - | chr4_3:73145922-73145941 | None:intergenic | 45.0% | |
| GAGATTGGAGCTGACAAAGT+TGG | + | chr4_3:73145949-73145968 | Msa0661670:CDS | 45.0% | |
| GACTCTAACCCTCATGCTTT+AGG | + | chr4_3:73146012-73146031 | Msa0661670:CDS | 45.0% | |
| CATGGGCATTAAGGACTCAT+TGG | - | chr4_3:73146130-73146149 | None:intergenic | 45.0% | |
| GGTGGATACAATAGGACTGA+AGG | + | chr4_3:73146183-73146202 | Msa0661670:CDS | 45.0% | |
| ! | AACAATGTGTTGGCCAGCAA+TGG | + | chr4_3:73146207-73146226 | Msa0661670:CDS | 45.0% |
| ! | CGGATTTGGTAGCTTATGGA+AGG | + | chr4_3:73146232-73146251 | Msa0661670:CDS | 45.0% |
| GTTGGATGGCCAATTGAACA+AGG | + | chr4_3:73146293-73146312 | Msa0661670:CDS | 45.0% | |
| CCATGTTGTATGGGGTGAGA+AGG | - | chr4_3:73143710-73143729 | None:intergenic | 50.0% | |
| CCTTCTCACCCCATACAACA+TGG | + | chr4_3:73143707-73143726 | Msa0661670:CDS | 50.0% | |
| TTCTTGATTGGGGAAGCCTC+AGG | + | chr4_3:73143966-73143985 | Msa0661670:CDS | 50.0% | |
| TCTTGATTGGGGAAGCCTCA+GGG | + | chr4_3:73143967-73143986 | Msa0661670:CDS | 50.0% | |
| GGAGCTGTTCATGAGAAAGG+AGG | + | chr4_3:73144545-73144564 | Msa0661670:CDS | 50.0% | |
| !! | TTTTGTCAGCTTTGGCACGC+TGG | + | chr4_3:73144575-73144594 | Msa0661670:CDS | 50.0% |
| !! | GCTGGAAGAGTGTCCAACTA+TGG | + | chr4_3:73144593-73144612 | Msa0661670:CDS | 50.0% |
| TCAAACATGGTGCACATCCC+AGG | - | chr4_3:73146096-73146115 | None:intergenic | 50.0% | |
| TACCAAATCCGCACCATTGC+TGG | - | chr4_3:73146223-73146242 | None:intergenic | 50.0% | |
| ! | GGTGCGGATTTGGTAGCTTA+TGG | + | chr4_3:73146228-73146247 | Msa0661670:CDS | 50.0% |
| CTTGATTGGGGAAGCCTCAG+GGG | + | chr4_3:73143968-73143987 | Msa0661670:CDS | 55.0% | |
| GGGTCTCAGACACTGCACAA+GGG | + | chr4_3:73143988-73144007 | Msa0661670:CDS | 55.0% | |
| TTGGAGGCTGTCCATCTGGT+TGG | - | chr4_3:73145317-73145336 | None:intergenic | 55.0% | |
| GAGATTGGAGGCTGTCCATC+TGG | - | chr4_3:73145321-73145340 | None:intergenic | 55.0% | |
| TTGTGAGACGTCGAGGAGGT+GGG | - | chr4_3:73145389-73145408 | None:intergenic | 55.0% | |
| ! | TCATCGGTTGTGAGACGTCG+AGG | - | chr4_3:73145396-73145415 | None:intergenic | 55.0% |
| ! | TCGTTGTCGCTTCCCTCTAG+AGG | + | chr4_3:73145906-73145925 | Msa0661670:CDS | 55.0% |
| ! | TGTGTTGGCCAGCAATGGTG+CGG | + | chr4_3:73146212-73146231 | Msa0661670:CDS | 55.0% |
| ! | TGCAGTGTCTGAGACCCCTG+AGG | - | chr4_3:73143985-73144004 | None:intergenic | 60.0% |
| GGGGTCTCAGACACTGCACA+AGG | + | chr4_3:73143987-73144006 | Msa0661670:CDS | 60.0% | |
| GTTGTGAGACGTCGAGGAGG+TGG | - | chr4_3:73145390-73145409 | None:intergenic | 60.0% | |
| TCGGTTGTGAGACGTCGAGG+AGG | - | chr4_3:73145393-73145412 | None:intergenic | 60.0% | |
| GGCCAGCAATGGTGCGGATT+TGG | + | chr4_3:73146218-73146237 | Msa0661670:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 73143660 | 73146395 | 73143660 | ID=Msa0661670;Name=Msa0661670 |
| chr4_3 | mRNA | 73143660 | 73146395 | 73143660 | ID=Msa0661670-mRNA-1;Parent=Msa0661670;Name=Msa0661670-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|5|0|373 |
| chr4_3 | exon | 73143660 | 73143751 | 73143660 | ID=Msa0661670-mRNA-1:exon:22028;Parent=Msa0661670-mRNA-1 |
| chr4_3 | exon | 73143869 | 73144009 | 73143869 | ID=Msa0661670-mRNA-1:exon:22029;Parent=Msa0661670-mRNA-1 |
| chr4_3 | exon | 73144484 | 73144614 | 73144484 | ID=Msa0661670-mRNA-1:exon:22030;Parent=Msa0661670-mRNA-1 |
| chr4_3 | exon | 73145310 | 73145471 | 73145310 | ID=Msa0661670-mRNA-1:exon:22031;Parent=Msa0661670-mRNA-1 |
| chr4_3 | exon | 73145800 | 73146395 | 73145800 | ID=Msa0661670-mRNA-1:exon:22032;Parent=Msa0661670-mRNA-1 |
| chr4_3 | CDS | 73143660 | 73143751 | 73143660 | ID=Msa0661670-mRNA-1:cds;Parent=Msa0661670-mRNA-1 |
| chr4_3 | CDS | 73143869 | 73144009 | 73143869 | ID=Msa0661670-mRNA-1:cds;Parent=Msa0661670-mRNA-1 |
| chr4_3 | CDS | 73144484 | 73144614 | 73144484 | ID=Msa0661670-mRNA-1:cds;Parent=Msa0661670-mRNA-1 |
| chr4_3 | CDS | 73145310 | 73145471 | 73145310 | ID=Msa0661670-mRNA-1:cds;Parent=Msa0661670-mRNA-1 |
| chr4_3 | CDS | 73145800 | 73146395 | 73145800 | ID=Msa0661670-mRNA-1:cds;Parent=Msa0661670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
