AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1334670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334670 MtrunA17_Chr4g0072091 99.071 323 3 0 1 323 1 323 0.0 659
Msa1334670 MtrunA17_Chr5g0401431 65.031 326 108 3 1 320 1 326 8.38e-157 441
Msa1334670 MtrunA17_Chr4g0053871 67.619 315 94 2 9 320 12 321 5.47e-155 437
Msa1334670 MtrunA17_Chr1g0148021 63.240 321 116 1 5 323 8 328 8.46e-148 419
Msa1334670 MtrunA17_Chr7g0225221 55.521 326 136 4 1 323 1 320 4.16e-125 361
Msa1334670 MtrunA17_Chr1g0197411 42.547 322 178 3 7 323 11 330 1.02e-87 266
Msa1334670 MtrunA17_Chr4g0046131 44.375 320 167 5 10 320 26 343 2.46e-85 260
Msa1334670 MtrunA17_Chr8g0364291 42.415 323 179 4 1 319 1 320 4.46e-83 254
Msa1334670 MtrunA17_Chr3g0128061 42.500 320 175 5 5 319 7 322 2.27e-82 252
Msa1334670 MtrunA17_Chr5g0405991 43.614 321 167 8 7 323 6 316 9.68e-82 250
Msa1334670 MtrunA17_Chr6g0451571 42.368 321 176 6 8 323 18 334 2.48e-79 244
Msa1334670 MtrunA17_Chr2g0292211 44.582 323 169 5 3 319 19 337 3.06e-79 245
Msa1334670 MtrunA17_Chr1g0157051 41.139 316 175 5 7 319 7 314 6.87e-79 243
Msa1334670 MtrunA17_Chr7g0258811 41.994 331 180 5 1 323 45 371 3.79e-78 243
Msa1334670 MtrunA17_Chr2g0292241 45.277 307 158 5 19 319 24 326 1.97e-77 240
Msa1334670 MtrunA17_Chr2g0322861 41.250 320 180 5 8 323 71 386 4.61e-77 241
Msa1334670 MtrunA17_Chr1g0175561 41.104 326 178 4 5 323 8 326 8.44e-76 235
Msa1334670 MtrunA17_Chr4g0063671 41.975 324 177 5 6 323 2 320 1.40e-75 234
Msa1334670 MtrunA17_Chr2g0292181 43.648 307 163 5 19 319 33 335 2.77e-75 235
Msa1334670 MtrunA17_Chr2g0292251 43.974 307 162 5 19 319 23 325 7.40e-75 234
Msa1334670 MtrunA17_Chr2g0292271 41.159 328 185 4 1 323 6 330 8.12e-75 234
Msa1334670 MtrunA17_Chr2g0299691 41.562 320 178 4 6 319 38 354 2.70e-74 233
Msa1334670 MtrunA17_Chr8g0371381 42.809 299 159 6 24 319 26 315 1.17e-73 229
Msa1334670 MtrunA17_Chr4g0076211 42.282 298 163 5 27 323 44 333 6.74e-73 228
Msa1334670 MtrunA17_Chr2g0292261 43.648 307 163 4 19 319 24 326 8.01e-73 229
Msa1334670 MtrunA17_Chr2g0291751 44.118 306 161 6 20 319 25 326 2.23e-72 228
Msa1334670 MtrunA17_Chr1g0204011 41.139 316 175 6 8 319 10 318 6.47e-72 225
Msa1334670 MtrunA17_Chr4g0024121 39.557 316 187 3 6 319 9 322 1.21e-71 224
Msa1334670 MtrunA17_Chr7g0268501 40.673 327 183 6 1 323 1 320 3.40e-71 223
Msa1334670 MtrunA17_Chr7g0268521 40.673 327 183 6 1 323 1 320 3.40e-71 223
Msa1334670 MtrunA17_Chr2g0292151 41.694 307 169 6 19 319 24 326 1.36e-70 223
Msa1334670 MtrunA17_Chr1g0194151 40.785 331 178 10 5 323 9 333 1.80e-70 222
Msa1334670 MtrunA17_Chr2g0279041 39.394 330 188 6 1 323 1 325 1.97e-70 221
Msa1334670 MtrunA17_Chr4g0013171 39.938 323 181 6 5 323 8 321 2.24e-70 221
Msa1334670 MtrunA17_Chr5g0404721 40.532 301 170 4 28 323 34 330 6.41e-70 220
Msa1334670 MtrunA17_Chr2g0320071 39.748 317 177 5 6 319 8 313 1.06e-69 219
Msa1334670 MtrunA17_Chr2g0320091 39.185 319 177 6 6 319 8 314 1.36e-69 219
Msa1334670 MtrunA17_Chr1g0194271 40.828 338 175 10 5 323 9 340 1.48e-69 220
Msa1334670 MtrunA17_Chr5g0402581 40.439 319 179 7 6 319 10 322 3.47e-69 218
Msa1334670 MtrunA17_Chr4g0070951 40.752 319 179 5 6 319 12 325 4.68e-69 218
Msa1334670 MtrunA17_Chr7g0254231 42.667 300 158 7 22 319 20 307 1.22e-68 216
Msa1334670 MtrunA17_Chr6g0467251 40.184 326 178 6 5 323 13 328 1.37e-68 218
Msa1334670 MtrunA17_Chr5g0438021 37.273 330 188 6 1 323 8 325 4.30e-68 216
Msa1334670 MtrunA17_Chr5g0402571 39.498 319 182 7 6 319 10 322 4.47e-68 216
Msa1334670 MtrunA17_Chr6g0467121 41.554 296 163 4 24 319 74 359 5.16e-68 217
Msa1334670 MtrunA17_Chr1g0164891 40.789 304 164 8 27 320 92 389 2.56e-67 216
Msa1334670 MtrunA17_Chr2g0320101 39.432 317 178 5 6 319 8 313 3.21e-67 213
Msa1334670 MtrunA17_Chr7g0244451 40.994 322 165 7 11 323 11 316 3.70e-67 213
Msa1334670 MtrunA17_Chr2g0292111 40.909 308 170 7 19 319 24 326 4.01e-67 214
Msa1334670 MtrunA17_Chr2g0292101 40.717 307 172 5 19 319 20 322 4.05e-67 214
Msa1334670 MtrunA17_Chr2g0320031 40.439 319 174 7 6 319 8 315 1.64e-66 211
Msa1334670 MtrunA17_Chr2g0292291 42.208 308 167 5 19 319 25 328 2.14e-66 212
Msa1334670 MtrunA17_Chr2g0292091 39.604 303 175 4 22 319 22 321 2.23e-66 212
Msa1334670 MtrunA17_Chr3g0106921 39.755 327 176 8 5 323 7 320 2.26e-66 211
Msa1334670 MtrunA17_Chr1g0188431 37.072 321 185 6 6 323 21 327 2.33e-66 211
Msa1334670 MtrunA17_Chr2g0320061 39.308 318 178 6 6 319 8 314 7.45e-66 209
Msa1334670 MtrunA17_Chr3g0136751 38.750 320 189 4 6 323 8 322 1.04e-65 209
Msa1334670 MtrunA17_Chr8g0372601 39.394 297 171 4 28 319 34 326 1.09e-65 209
Msa1334670 MtrunA17_Chr4g0013181 40.333 300 166 6 28 323 63 353 1.35e-65 210
Msa1334670 MtrunA17_Chr3g0107881 41.463 328 171 10 6 323 8 324 5.07e-65 207
Msa1334670 MtrunA17_Chr4g0038161 40.367 327 173 9 5 323 8 320 5.67e-65 207
Msa1334670 MtrunA17_Chr3g0129051 39.198 324 178 7 7 323 11 322 1.11e-64 207
Msa1334670 MtrunA17_Chr3g0129061 40.625 320 171 7 11 323 15 322 1.21e-64 206
Msa1334670 MtrunA17_Chr6g0467161 39.024 328 180 6 6 323 19 336 1.24e-64 207
Msa1334670 MtrunA17_Chr4g0038151 39.009 323 180 7 8 323 9 321 1.54e-64 206
Msa1334670 MtrunA17_Chr2g0296621 37.037 297 177 6 24 319 50 337 3.87e-64 206
Msa1334670 MtrunA17_Chr7g0254201 38.538 301 172 6 22 319 18 308 4.61e-64 205
Msa1334670 MtrunA17_Chr7g0244461 37.097 310 166 4 21 319 17 308 4.71e-64 205
Msa1334670 MtrunA17_Chr2g0320051 39.308 318 178 6 6 319 8 314 5.08e-64 205
Msa1334670 MtrunA17_Chr2g0278671 40.064 312 171 8 20 323 20 323 1.50e-63 204
Msa1334670 MtrunA17_Chr4g0043391 39.877 326 177 8 5 323 11 324 2.84e-63 203
Msa1334670 MtrunA17_Chr4g0013201 39.308 318 178 5 10 323 32 338 5.69e-63 203
Msa1334670 MtrunA17_Chr4g0038171 38.365 318 180 6 13 323 13 321 2.39e-62 201
Msa1334670 MtrunA17_Chr5g0432441 40.244 328 172 11 6 323 13 326 3.20e-62 201
Msa1334670 MtrunA17_Chr5g0432351 39.697 330 172 10 6 323 7 321 3.28e-62 200
Msa1334670 MtrunA17_Chr4g0068621 37.621 311 183 5 18 323 32 336 5.54e-62 200
Msa1334670 MtrunA17_Chr4g0013721 37.134 307 184 6 16 319 92 392 9.43e-61 199
Msa1334670 MtrunA17_Chr4g0013191 39.935 308 171 7 21 323 42 340 2.39e-60 196
Msa1334670 MtrunA17_Chr6g0460711 37.658 316 185 6 7 319 4 310 5.93e-60 194
Msa1334670 MtrunA17_Chr5g0432341 38.788 330 175 10 6 323 7 321 6.35e-60 194
Msa1334670 MtrunA17_Chr3g0114451 36.810 326 189 5 5 323 3 318 7.54e-60 194
Msa1334670 MtrunA17_Chr5g0432331 38.788 330 175 10 6 323 38 352 3.82e-59 193
Msa1334670 MtrunA17_Chr4g0013821 36.393 305 181 6 20 319 24 320 4.52e-59 193
Msa1334670 MtrunA17_Chr3g0129041 38.650 326 180 7 6 323 9 322 7.06e-59 192
Msa1334670 MtrunA17_Chr5g0400331 37.864 309 178 6 21 319 23 327 3.12e-57 188
Msa1334670 MtrunA17_Chr6g0477071 35.948 306 179 6 21 323 51 342 3.29e-57 188
Msa1334670 MtrunA17_Chr2g0329641 35.061 328 198 6 5 323 14 335 8.92e-57 187
Msa1334670 MtrunA17_Chr1g0155611 37.908 306 180 5 24 323 46 347 1.35e-55 184
Msa1334670 MtrunA17_Chr1g0213061 37.072 321 183 8 6 319 9 317 3.12e-55 182
Msa1334670 MtrunA17_Chr4g0075241 35.505 307 185 6 23 323 28 327 6.22e-55 182
Msa1334670 MtrunA17_Chr7g0224371 34.700 317 194 6 6 319 12 318 3.56e-54 179
Msa1334670 MtrunA17_Chr2g0316791 34.627 335 180 5 22 321 74 404 4.47e-54 182
Msa1334670 MtrunA17_Chr4g0074851 32.530 332 202 7 5 323 6 328 6.37e-54 179
Msa1334670 MtrunA17_Chr2g0316481 35.224 335 178 6 22 321 74 404 9.20e-54 181
Msa1334670 MtrunA17_Chr2g0279061 39.231 260 149 4 68 323 12 266 2.51e-53 176
Msa1334670 MtrunA17_Chr1g0181511 34.768 302 186 5 22 319 25 319 7.01e-53 176
Msa1334670 MtrunA17_Chr1g0181431 34.106 302 188 5 22 319 25 319 1.04e-52 176
Msa1334670 MtrunA17_Chr2g0316191 34.821 336 179 6 22 321 74 405 1.20e-52 178
Msa1334670 MtrunA17_Chr1g0181481 35.099 302 185 5 22 319 25 319 3.59e-52 174
Msa1334670 MtrunA17_Chr2g0316831 34.627 335 180 6 22 321 110 440 5.63e-52 177
Msa1334670 MtrunA17_Chr3g0106901 35.202 321 193 6 6 323 15 323 1.46e-50 170
Msa1334670 MtrunA17_Chr2g0311241 31.367 373 181 4 22 321 58 428 2.69e-50 172
Msa1334670 MtrunA17_Chr2g0311251 33.828 337 179 7 22 321 9 338 1.60e-49 168
Msa1334670 MtrunA17_Chr5g0421411 35.766 274 163 8 55 319 12 281 3.98e-48 163
Msa1334670 MtrunA17_Chr5g0413051 33.968 315 187 9 22 323 71 377 1.45e-47 164
Msa1334670 MtrunA17_Chr5g0432401 35.168 327 148 10 6 321 11 284 1.24e-45 156
Msa1334670 MtrunA17_Chr4g0004591 32.390 318 155 4 24 321 77 354 1.61e-42 150
Msa1334670 MtrunA17_Chr2g0292281 43.902 205 103 3 117 319 18 212 6.98e-42 145
Msa1334670 MtrunA17_Chr2g0316811 37.391 230 120 5 22 231 48 273 4.04e-37 135
Msa1334670 MtrunA17_Chr3g0114461 37.895 190 110 3 135 323 10 192 8.17e-33 120
Msa1334670 MtrunA17_Chr2g0316141 31.597 288 139 8 70 321 11 276 4.16e-29 112
Msa1334670 MtrunA17_Chr2g0316181 31.597 288 139 8 70 321 11 276 4.16e-29 112
Msa1334670 MtrunA17_Chr1g0181501 31.746 189 118 4 135 319 4 185 1.18e-22 93.2
Msa1334670 MtrunA17_Chr5g0432321 38.889 126 65 3 145 268 17 132 6.01e-19 81.6
Msa1334670 MtrunA17_Chr7g0254181 39.552 134 68 3 96 229 33 153 3.33e-17 77.4
Msa1334670 MtrunA17_Chr1g0181491 34.959 123 76 3 22 143 10 129 1.42e-16 75.5
Msa1334670 MtrunA17_Chr3g0114491 40.179 112 61 3 23 131 17 125 6.94e-16 73.6
Msa1334670 MtrunA17_Chr4g0037131 28.467 274 141 10 55 320 32 258 3.89e-15 74.7
Msa1334670 MtrunA17_Chr3g0137751 27.675 271 120 9 55 308 105 316 1.87e-13 70.1
Msa1334670 MtrunA17_Chr3g0104101 30.435 138 89 5 188 319 9 145 2.64e-12 63.9
Msa1334670 MtrunA17_Chr7g0268491 42.683 82 46 1 242 323 17 97 4.36e-12 61.6
Msa1334670 MtrunA17_Chr5g0423911 46.377 69 37 0 254 322 2 70 5.27e-12 62.0
Msa1334670 MtrunA17_Chr6g0468731 43.662 71 36 2 63 133 22 88 8.34e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1334670 AT2G18980.1 73.981 319 82 1 5 323 6 323 2.45e-175 488
Msa1334670 AT4G30170.1 76.238 303 71 1 21 323 24 325 4.28e-172 480
Msa1334670 AT3G49960.1 62.776 317 115 2 6 319 9 325 3.31e-147 417
Msa1334670 AT4G37530.1 65.017 303 103 1 20 319 23 325 8.11e-147 416
Msa1334670 AT5G67400.1 63.924 316 111 2 7 319 10 325 3.62e-144 410
Msa1334670 AT4G37520.1 63.455 301 107 1 22 319 25 325 8.45e-143 406
Msa1334670 AT4G37520.2 62.458 301 107 2 22 319 25 322 1.34e-138 395
Msa1334670 AT4G37530.2 65.385 260 87 1 20 276 23 282 8.28e-127 364
Msa1334670 AT5G14130.1 55.031 318 138 3 8 323 16 330 6.15e-115 335
Msa1334670 AT5G14130.2 55.031 318 138 3 8 323 57 371 1.18e-114 337
Msa1334670 AT4G17690.1 47.039 304 150 4 24 323 26 322 2.09e-89 270
Msa1334670 AT5G47000.1 45.988 324 163 5 6 323 13 330 3.88e-87 265
Msa1334670 AT2G34060.1 42.598 331 171 6 6 319 14 342 1.57e-85 261
Msa1334670 AT5G40150.1 43.042 309 155 5 20 319 28 324 6.69e-80 246
Msa1334670 AT4G11290.1 42.679 321 170 6 9 319 6 322 4.33e-79 244
Msa1334670 AT3G28200.1 41.311 305 167 4 19 319 16 312 1.23e-77 240
Msa1334670 AT1G05240.1 43.144 299 164 3 28 323 30 325 2.60e-77 239
Msa1334670 AT1G05250.1 43.144 299 164 3 28 323 30 325 2.60e-77 239
Msa1334670 AT1G24110.1 41.176 323 183 5 5 323 3 322 3.79e-77 239
Msa1334670 AT5G06730.1 41.121 321 179 5 6 319 13 330 3.92e-77 240
Msa1334670 AT5G06720.1 40.867 323 181 5 8 323 14 333 4.32e-76 237
Msa1334670 AT1G05260.1 40.850 306 173 4 22 323 24 325 6.67e-76 236
Msa1334670 AT3G50990.1 41.290 310 177 4 17 323 34 341 1.72e-75 236
Msa1334670 AT5G42180.1 40.379 317 176 7 9 321 8 315 5.86e-75 233
Msa1334670 AT2G38380.1 42.949 312 171 4 13 319 20 329 1.60e-74 233
Msa1334670 AT5G15180.1 38.838 327 193 4 1 323 6 329 2.67e-74 232
Msa1334670 AT3G01190.1 41.534 313 177 4 12 323 14 321 7.96e-74 230
Msa1334670 AT4G31760.1 41.615 322 175 5 8 323 12 326 1.44e-73 230
Msa1334670 AT5G51890.1 42.903 310 162 8 13 316 15 315 1.69e-73 229
Msa1334670 AT5G19880.1 42.368 321 174 7 11 323 12 329 2.02e-73 229
Msa1334670 AT2G38390.1 41.987 312 174 4 13 319 20 329 3.84e-73 229
Msa1334670 AT3G49120.1 41.534 313 175 4 13 319 21 331 4.70e-73 229
Msa1334670 AT4G36430.1 40.127 314 183 3 13 323 19 330 5.73e-73 229
Msa1334670 AT3G21770.1 41.176 306 172 5 19 320 24 325 7.07e-73 228
Msa1334670 AT3G32980.1 41.853 313 174 4 13 319 20 330 2.65e-72 228
Msa1334670 AT5G66390.1 40.062 322 184 4 7 323 16 333 5.63e-72 226
Msa1334670 AT3G49110.1 41.214 313 176 4 13 319 22 332 8.07e-72 226
Msa1334670 AT2G18150.1 41.000 300 172 3 27 323 39 336 3.66e-71 224
Msa1334670 AT1G71695.1 42.105 304 164 6 24 323 44 339 4.28e-71 224
Msa1334670 AT5G17820.1 40.867 323 180 6 1 323 2 313 5.50e-71 223
Msa1334670 AT5G17820.2 40.867 323 180 6 1 323 55 366 4.99e-70 222
Msa1334670 AT5G05340.1 41.748 309 161 6 22 323 28 324 5.74e-70 221
Msa1334670 AT2G18140.1 40.803 299 172 3 28 323 39 335 1.97e-69 220
Msa1334670 AT2G39040.1 41.558 308 165 8 22 319 44 346 2.74e-69 220
Msa1334670 AT2G41480.1 37.771 323 191 4 6 323 11 328 2.86e-69 219
Msa1334670 AT2G24800.1 39.542 306 176 5 22 323 29 329 2.17e-68 217
Msa1334670 AT5G64110.1 39.329 328 185 7 4 323 9 330 4.96e-68 216
Msa1334670 AT5G64120.1 39.394 297 174 4 27 323 38 328 1.57e-67 214
Msa1334670 AT4G08780.1 39.610 308 178 4 18 319 18 323 8.65e-67 213
Msa1334670 AT4G08770.1 39.550 311 180 4 15 319 15 323 1.08e-66 213
Msa1334670 AT1G14540.1 40.123 324 176 8 7 323 3 315 1.85e-66 211
Msa1334670 AT5G39580.1 39.375 320 181 7 6 323 11 319 1.30e-65 209
Msa1334670 AT5G58400.1 38.838 327 179 8 5 323 12 325 2.98e-64 206
Msa1334670 AT4G16270.1 39.597 298 169 7 27 319 53 344 7.44e-64 206
Msa1334670 AT1G14550.1 39.692 325 178 10 6 323 8 321 2.47e-63 204
Msa1334670 AT5G58390.1 41.538 325 170 9 7 323 4 316 4.13e-63 203
Msa1334670 AT2G22420.1 37.700 313 182 6 12 319 11 315 4.56e-63 203
Msa1334670 AT1G77100.1 39.677 310 171 6 20 323 20 319 5.46e-63 202
Msa1334670 AT1G49570.1 39.355 310 175 7 21 322 45 349 5.67e-63 203
Msa1334670 AT5G19890.1 40.066 302 171 5 22 319 28 323 8.28e-63 202
Msa1334670 AT3G03670.1 37.500 320 196 3 1 319 1 317 1.05e-62 202
Msa1334670 AT1G30870.1 37.624 303 178 6 24 323 51 345 1.30e-62 202
Msa1334670 AT4G33420.1 37.888 322 179 7 9 323 18 325 4.44e-62 200
Msa1334670 AT4G33420.2 37.888 322 179 7 9 323 65 372 2.27e-61 200
Msa1334670 AT4G25980.1 38.065 310 181 6 20 323 22 326 8.59e-61 197
Msa1334670 AT5G24070.1 36.013 311 186 5 16 319 27 331 5.10e-60 196
Msa1334670 AT1G44970.1 38.926 298 172 5 28 319 49 342 7.05e-59 193
Msa1334670 AT2G43480.1 35.048 311 189 5 20 323 31 335 1.76e-58 191
Msa1334670 AT5G64100.1 35.952 331 191 7 6 323 9 331 3.72e-58 191
Msa1334670 AT4G33870.1 32.440 336 189 4 22 321 66 399 5.02e-58 192
Msa1334670 AT5G22410.1 36.164 318 191 7 7 319 11 321 2.98e-56 186
Msa1334670 AT1G34510.1 36.304 303 171 8 22 319 20 305 3.69e-55 182
Msa1334670 AT2G35380.1 35.905 337 179 9 7 319 8 331 2.88e-54 181
Msa1334670 AT4G26010.2 36.562 320 187 8 2 319 28 333 7.20e-54 179
Msa1334670 AT4G26010.1 36.593 317 185 8 5 319 3 305 7.89e-54 179
Msa1334670 AT1G68850.1 34.202 307 186 9 24 319 30 331 6.51e-53 177
Msa1334670 AT2G37130.1 35.197 304 185 6 21 319 27 323 8.09e-52 174
Msa1334670 AT2G37130.2 35.690 297 179 6 28 319 3 292 1.55e-51 172
Msa1334670 AT4G21960.1 31.548 336 208 7 1 323 1 327 1.46e-50 171
Msa1334670 AT3G17070.1 32.934 334 200 9 3 321 13 337 1.26e-42 150
Msa1334670 AT2G35380.2 35.146 239 129 6 96 319 16 243 5.29e-36 130
Msa1334670 AT5G39580.2 42.268 194 101 5 6 198 11 194 1.14e-35 129
Msa1334670 AT2G24800.2 41.071 168 95 2 22 189 29 192 6.26e-33 122
Msa1334670 AT4G25980.2 38.983 177 104 3 19 195 66 238 2.46e-29 114
Msa1334670 AT3G17070.2 32.584 267 159 9 66 321 18 274 2.68e-28 110
Msa1334670 AT4G32320.1 29.057 265 158 11 11 261 75 323 3.34e-12 66.6

Find 86 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAATTCAACATTATAAAA+TGG 0.234921 8_4:+55138807 None:intergenic
AAAGCACTCTCAAAAGCTTT+TGG 0.240385 8_4:+55138255 None:intergenic
ATTCTAGGATCAACTCTTAA+AGG 0.261695 8_4:+55138426 None:intergenic
CTGGTAATCAAGGTGAAATT+AGG 0.279887 8_4:-55138191 Msa1334670:CDS
TCCATGTTTATTGCAATTCT+AGG 0.304893 8_4:+55138411 None:intergenic
GATGGGTCAATTCTACTTCT+TGG 0.306557 8_4:+55138489 None:intergenic
AACAAGAGATGTCGTCAATT+TGG 0.322334 8_4:-55138986 Msa1334670:intron
ACAGATATGGTTGCATTATC+AGG 0.330722 8_4:-55138672 Msa1334670:intron
TTCGGAAGCATGCAGTTATA+TGG 0.349386 8_4:-55138111 Msa1334670:three_prime_UTR
TATTAATGCTATTACTAAGT+TGG 0.351024 8_4:-55138232 Msa1334670:CDS
AAGGACACATTTGCCTAAGT+TGG 0.369798 8_4:+55138445 None:intergenic
AGGCCAAGGCAGCCGTTGAT+AGG 0.374458 8_4:-55139059 Msa1334670:CDS
TCTTCCATGATTGCTTTGTC+AGG 0.378203 8_4:-55139292 Msa1334670:CDS
GGAAGGGTTGGTGTTAAAAC+TGG 0.381845 8_4:-55138210 Msa1334670:CDS
ATTAATGCTATTACTAAGTT+GGG 0.389915 8_4:-55138231 Msa1334670:CDS
TGTTTAGGTGCACATACAAT+TGG 0.394824 8_4:-55138558 Msa1334670:intron
TACAATATGCTTTCCAACTT+AGG 0.395009 8_4:-55138458 Msa1334670:CDS
ATGGGTCAATTCTACTTCTT+GGG 0.405954 8_4:+55138490 None:intergenic
CGAACCAATTGTTCAACATT+GGG 0.410150 8_4:+55139377 None:intergenic
TATGGCATCATCGTCGGATT+CGG 0.411722 8_4:-55138129 Msa1334670:three_prime_UTR
GCATATTGTAAATTTAATGA+TGG 0.417152 8_4:+55138471 None:intergenic
AAGTGTTGTTTACTGATTCA+AGG 0.418439 8_4:-55138311 Msa1334670:CDS
AGTTCTTTGAGGTATATTCC+TGG 0.424322 8_4:-55137867 Msa1334670:three_prime_UTR
ATAAATGATCAAGTTCTTTG+AGG 0.429563 8_4:-55137878 Msa1334670:three_prime_UTR
TGGCCTCTCTCAAACAGATA+TGG 0.436444 8_4:-55138685 Msa1334670:CDS
ACCGTTCAGTCTCAAATCAA+TGG 0.436643 8_4:+55138073 None:intergenic
ATCCCTATCAACGGCTGCCT+TGG 0.441611 8_4:+55139056 None:intergenic
GGATGTTCCCTCTCTGCCTT+CGG 0.455966 8_4:+55139126 None:intergenic
GAGACTTTGTTTCGGCACTT+AGG 0.474560 8_4:+55139033 None:intergenic
TTGTTGAAACTTCTGATTCA+CGG 0.478111 8_4:+55139349 None:intergenic
GGTGTTAAAACTGGTAATCA+AGG 0.480424 8_4:-55138201 Msa1334670:CDS
ATGCCCCAATGTTGAACAAT+TGG 0.480960 8_4:-55139381 Msa1334670:CDS
CTTCCATGATTGCTTTGTCA+GGG 0.481760 8_4:-55139291 Msa1334670:intron
AGCTGATTCAAATTGAAATG+AGG 0.482900 8_4:+55138729 None:intergenic
AAGAACAGTCTGAGAGTGGC+AGG 0.483844 8_4:+55139311 None:intergenic
CAGCACAAGAGACTTTGTTT+CGG 0.486532 8_4:+55139025 None:intergenic
GCTGATTCAAATTGAAATGA+GGG 0.493262 8_4:+55138730 None:intergenic
CGCTTCTCAAATAGAATCTA+CGG 0.494457 8_4:-55138519 Msa1334670:CDS
ATACCCTGACAAAGCAATCA+TGG 0.497957 8_4:+55139288 None:intergenic
GACCATCATATCAAAATCAA+TGG 0.498791 8_4:+55138009 None:intergenic
ACTGCGTCAAGTGGTTATGC+AGG 0.500869 8_4:-55137976 Msa1334670:three_prime_UTR
AATACCATGTTTAATCTCCA+TGG 0.501959 8_4:-55138705 Msa1334670:CDS
CATATTGTAAATTTAATGAT+GGG 0.504769 8_4:+55138472 None:intergenic
ACGAACCAATTGTTCAACAT+TGG 0.505241 8_4:+55139376 None:intergenic
TTCAAATTGAAATGAGGGCC+AGG 0.507134 8_4:+55138735 None:intergenic
GGCCAAGGCAGCCGTTGATA+GGG 0.509062 8_4:-55139058 Msa1334670:CDS
TTTATAATGTTGAATTGGGA+AGG 0.509337 8_4:-55138803 Msa1334670:CDS
AAGAATCTACAACAAGGAAA+AGG 0.514037 8_4:-55138351 Msa1334670:CDS
TGCTATTACTAAGTTGGGAA+GGG 0.516971 8_4:-55138226 Msa1334670:CDS
AACAGAACATTCATTAGCAA+TGG 0.517705 8_4:-55139495 Msa1334670:exon
GTTTACTGATTCAAGGTCAA+AGG 0.518163 8_4:-55138304 Msa1334670:CDS
CACAGTGTCAAAACCGTCCC+CGG 0.519436 8_4:+55139086 None:intergenic
CCCAAAAGAAAAGATGATGA+TGG 0.520472 8_4:+55137943 None:intergenic
CCGGCTAGTGATATATCATC+AGG 0.522576 8_4:+55139105 None:intergenic
AAATTAGGTTTGATTGTACC+AGG 0.524795 8_4:-55138176 Msa1334670:CDS
CGTAGATTCTATTTGAGAAG+CGG 0.527609 8_4:+55138520 None:intergenic
ATTACTAAGTTGGGAAGGGT+TGG 0.533445 8_4:-55138222 Msa1334670:CDS
ATGCTATTACTAAGTTGGGA+AGG 0.537394 8_4:-55138227 Msa1334670:CDS
TTGAATTGGGAAGGCGTGAT+GGG 0.540575 8_4:-55138794 Msa1334670:CDS
GTTGAATTGGGAAGGCGTGA+TGG 0.540741 8_4:-55138795 Msa1334670:CDS
TGACACTGTGGTTAAGGCCA+AGG 0.546297 8_4:-55139073 Msa1334670:CDS
CCTAGTAGTAACTTGAAGCC+AGG 0.547090 8_4:+55137849 None:intergenic
CCTGATGATATATCACTAGC+CGG 0.549221 8_4:-55139105 Msa1334670:CDS
ACCATTGATTTGAGACTGAA+CGG 0.550622 8_4:-55138074 Msa1334670:three_prime_UTR
TACTGTTATGGCATCATCGT+CGG 0.553428 8_4:-55138135 Msa1334670:three_prime_UTR
AATGACAAGAAGACAAAGCT+TGG 0.556626 8_4:+55139467 None:intergenic
CTGATGATATATCACTAGCC+GGG 0.558208 8_4:-55139104 Msa1334670:CDS
TATCTGTTTGAGAGAGGCCA+TGG 0.565015 8_4:+55138688 None:intergenic
TGCAACTCCGAAGGCAGAGA+GGG 0.568528 8_4:-55139133 Msa1334670:CDS
TTTGATATGATGGTCGAGAT+CGG 0.574762 8_4:-55138001 Msa1334670:three_prime_UTR
TCCTAGAATTGCAATAAACA+TGG 0.588665 8_4:-55138412 Msa1334670:CDS
TGTGCAATATTGCAGGCAGG+GGG 0.610026 8_4:-55138831 Msa1334670:intron
AGATCGGTAACTGCGTCAAG+TGG 0.619691 8_4:-55137985 Msa1334670:three_prime_UTR
GATATATCACTAGCCGGGGA+CGG 0.624652 8_4:-55139099 Msa1334670:CDS
ATGGAAGAACAGTCTGAGAG+TGG 0.625981 8_4:+55139307 None:intergenic
CTGCGTCAAGTGGTTATGCA+GGG 0.634145 8_4:-55137975 Msa1334670:three_prime_UTR
CAACCATATCTGTTTGAGAG+AGG 0.635637 8_4:+55138682 None:intergenic
AGCTCAGCTCAACTCACTCG+TGG 0.647235 8_4:-55139419 Msa1334670:CDS
GCACTTAGGATCCCTATCAA+CGG 0.658126 8_4:+55139047 None:intergenic
TGATGATATATCACTAGCCG+GGG 0.662666 8_4:-55139103 Msa1334670:CDS
GAACCAATTGTTCAACATTG+GGG 0.665173 8_4:+55139378 None:intergenic
AGTGTTCAAAGAAATCTACC+TGG 0.677375 8_4:-55138753 Msa1334670:CDS
GAGGCCATGGAGATTAAACA+TGG 0.686465 8_4:+55138701 None:intergenic
GTGCAATATTGCAGGCAGGG+GGG 0.712500 8_4:-55138830 Msa1334670:intron
TTGCAACTCCGAAGGCAGAG+AGG 0.722926 8_4:-55139134 Msa1334670:CDS
TATTTCAAGAATCTACAACA+AGG 0.734171 8_4:-55138357 Msa1334670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATTAAAAGGAAAA+AGG + chr8_4:55138125-55138144 None:intergenic 10.0%
!! TTAGAGTTTAATTAATTAAA+AGG + chr8_4:55138132-55138151 None:intergenic 10.0%
!!! TTAATAAAATTTGTTTTCAA+TGG - chr8_4:55139323-55139342 Msa1334670:CDS 10.0%
!! TTAATTAATTAAAAGGAAAA+AGG + chr8_4:55138125-55138144 None:intergenic 10.0%
!! TTAGAGTTTAATTAATTAAA+AGG + chr8_4:55138132-55138151 None:intergenic 10.0%
!!! TTAATAAAATTTGTTTTCAA+TGG - chr8_4:55139323-55139342 Msa1334670:CDS 10.0%
!!! TAAGATTAGTATTACTATTT+TGG + chr8_4:55138509-55138528 None:intergenic 15.0%
!!! AAGAAGTATAAACTATTATA+TGG + chr8_4:55138736-55138755 None:intergenic 15.0%
!! CATATTGTAAATTTAATGAT+GGG + chr8_4:55138892-55138911 None:intergenic 15.0%
!!! TAAGATTAGTATTACTATTT+TGG + chr8_4:55138509-55138528 None:intergenic 15.0%
!!! AAGAAGTATAAACTATTATA+TGG + chr8_4:55138736-55138755 None:intergenic 15.0%
!! CATATTGTAAATTTAATGAT+GGG + chr8_4:55138892-55138911 None:intergenic 15.0%
!!! AAACAAAAATTTGCTTTTAC+AGG - chr8_4:55138183-55138202 Msa1334670:CDS 20.0%
!!! AACAAAAATTTGCTTTTACA+GGG - chr8_4:55138184-55138203 Msa1334670:CDS 20.0%
!! ATATTTGTAATTCACTTACA+AGG - chr8_4:55138437-55138456 Msa1334670:CDS 20.0%
!!! CCATTTTATAATGTTGAATT+GGG - chr8_4:55138554-55138573 Msa1334670:CDS 20.0%
!! GTATAAACTATTATATGGTA+GGG + chr8_4:55138731-55138750 None:intergenic 20.0%
!! AGTATAAACTATTATATGGT+AGG + chr8_4:55138732-55138751 None:intergenic 20.0%
!! CCTAAACATACATATTATAT+AGG + chr8_4:55138791-55138810 None:intergenic 20.0%
!! CCTATATAATATGTATGTTT+AGG - chr8_4:55138788-55138807 Msa1334670:CDS 20.0%
!! GCATATTGTAAATTTAATGA+TGG + chr8_4:55138893-55138912 None:intergenic 20.0%
!! TATTAATGCTATTACTAAGT+TGG - chr8_4:55139129-55139148 Msa1334670:CDS 20.0%
!! ATTAATGCTATTACTAAGTT+GGG - chr8_4:55139130-55139149 Msa1334670:CDS 20.0%
!!! AAACAAAAATTTGCTTTTAC+AGG - chr8_4:55138183-55138202 Msa1334670:CDS 20.0%
!!! AACAAAAATTTGCTTTTACA+GGG - chr8_4:55138184-55138203 Msa1334670:CDS 20.0%
!! ATATTTGTAATTCACTTACA+AGG - chr8_4:55138437-55138456 Msa1334670:CDS 20.0%
!!! CCATTTTATAATGTTGAATT+GGG - chr8_4:55138554-55138573 Msa1334670:CDS 20.0%
!! GTATAAACTATTATATGGTA+GGG + chr8_4:55138731-55138750 None:intergenic 20.0%
!! AGTATAAACTATTATATGGT+AGG + chr8_4:55138732-55138751 None:intergenic 20.0%
!! CCTAAACATACATATTATAT+AGG + chr8_4:55138791-55138810 None:intergenic 20.0%
!! CCTATATAATATGTATGTTT+AGG - chr8_4:55138788-55138807 Msa1334670:CDS 20.0%
!! GCATATTGTAAATTTAATGA+TGG + chr8_4:55138893-55138912 None:intergenic 20.0%
!! TATTAATGCTATTACTAAGT+TGG - chr8_4:55139129-55139148 Msa1334670:CDS 20.0%
!! ATTAATGCTATTACTAAGTT+GGG - chr8_4:55139130-55139149 Msa1334670:CDS 20.0%
! AAAGAAAGTGATGAAATGAA+TGG + chr8_4:55138403-55138422 None:intergenic 25.0%
!!! GCCATTTTATAATGTTGAAT+TGG - chr8_4:55138553-55138572 Msa1334670:CDS 25.0%
! CCCAATTCAACATTATAAAA+TGG + chr8_4:55138557-55138576 None:intergenic 25.0%
! TTTATAATGTTGAATTGGGA+AGG - chr8_4:55138558-55138577 Msa1334670:intron 25.0%
!!! TATTGATTGTCAAACTTTTG+AGG + chr8_4:55138986-55139005 None:intergenic 25.0%
! TATTTCAAGAATCTACAACA+AGG - chr8_4:55139004-55139023 Msa1334670:CDS 25.0%
! TAGAAAAAGTAGTACTGTTA+TGG - chr8_4:55139214-55139233 Msa1334670:intron 25.0%
! ATAAATGATCAAGTTCTTTG+AGG - chr8_4:55139483-55139502 Msa1334670:exon 25.0%
! AAAGAAAGTGATGAAATGAA+TGG + chr8_4:55138403-55138422 None:intergenic 25.0%
!!! GCCATTTTATAATGTTGAAT+TGG - chr8_4:55138553-55138572 Msa1334670:CDS 25.0%
! CCCAATTCAACATTATAAAA+TGG + chr8_4:55138557-55138576 None:intergenic 25.0%
! TTTATAATGTTGAATTGGGA+AGG - chr8_4:55138558-55138577 Msa1334670:intron 25.0%
!!! TATTGATTGTCAAACTTTTG+AGG + chr8_4:55138986-55139005 None:intergenic 25.0%
! TATTTCAAGAATCTACAACA+AGG - chr8_4:55139004-55139023 Msa1334670:CDS 25.0%
! TAGAAAAAGTAGTACTGTTA+TGG - chr8_4:55139214-55139233 Msa1334670:intron 25.0%
! ATAAATGATCAAGTTCTTTG+AGG - chr8_4:55139483-55139502 Msa1334670:exon 25.0%
AACAGAACATTCATTAGCAA+TGG - chr8_4:55137866-55137885 Msa1334670:three_prime_UTR 30.0%
TTGTTGAAACTTCTGATTCA+CGG + chr8_4:55138015-55138034 None:intergenic 30.0%
ATCTTATTGTGCAATATTGC+AGG - chr8_4:55138523-55138542 Msa1334670:CDS 30.0%
! GCTGATTCAAATTGAAATGA+GGG + chr8_4:55138634-55138653 None:intergenic 30.0%
! AGCTGATTCAAATTGAAATG+AGG + chr8_4:55138635-55138654 None:intergenic 30.0%
AATACCATGTTTAATCTCCA+TGG - chr8_4:55138656-55138675 Msa1334670:intron 30.0%
TACAATATGCTTTCCAACTT+AGG - chr8_4:55138903-55138922 Msa1334670:intron 30.0%
!! ATTCTAGGATCAACTCTTAA+AGG + chr8_4:55138938-55138957 None:intergenic 30.0%
TCCTAGAATTGCAATAAACA+TGG - chr8_4:55138949-55138968 Msa1334670:intron 30.0%
TCCATGTTTATTGCAATTCT+AGG + chr8_4:55138953-55138972 None:intergenic 30.0%
AAGAATCTACAACAAGGAAA+AGG - chr8_4:55139010-55139029 Msa1334670:CDS 30.0%
!! AAGTGTTGTTTACTGATTCA+AGG - chr8_4:55139050-55139069 Msa1334670:CDS 30.0%
AAATTAGGTTTGATTGTACC+AGG - chr8_4:55139185-55139204 Msa1334670:intron 30.0%
!!! CAGTACTACTTTTTCTAGTT+GGG + chr8_4:55139211-55139230 None:intergenic 30.0%
!!! ACAGTACTACTTTTTCTAGT+TGG + chr8_4:55139212-55139231 None:intergenic 30.0%
!!! CACCATTGATTTTGATATGA+TGG - chr8_4:55139350-55139369 Msa1334670:CDS 30.0%
GACCATCATATCAAAATCAA+TGG + chr8_4:55139355-55139374 None:intergenic 30.0%
! TCCATCATCATCTTTTCTTT+TGG - chr8_4:55139417-55139436 Msa1334670:CDS 30.0%
! CCATCATCATCTTTTCTTTT+GGG - chr8_4:55139418-55139437 Msa1334670:CDS 30.0%
! CATCATCATCTTTTCTTTTG+GGG - chr8_4:55139419-55139438 Msa1334670:CDS 30.0%
! ATCATCATCTTTTCTTTTGG+GGG - chr8_4:55139420-55139439 Msa1334670:CDS 30.0%
AACAGAACATTCATTAGCAA+TGG - chr8_4:55137866-55137885 Msa1334670:three_prime_UTR 30.0%
TTGTTGAAACTTCTGATTCA+CGG + chr8_4:55138015-55138034 None:intergenic 30.0%
ATCTTATTGTGCAATATTGC+AGG - chr8_4:55138523-55138542 Msa1334670:CDS 30.0%
! GCTGATTCAAATTGAAATGA+GGG + chr8_4:55138634-55138653 None:intergenic 30.0%
! AGCTGATTCAAATTGAAATG+AGG + chr8_4:55138635-55138654 None:intergenic 30.0%
AATACCATGTTTAATCTCCA+TGG - chr8_4:55138656-55138675 Msa1334670:intron 30.0%
TACAATATGCTTTCCAACTT+AGG - chr8_4:55138903-55138922 Msa1334670:intron 30.0%
!! ATTCTAGGATCAACTCTTAA+AGG + chr8_4:55138938-55138957 None:intergenic 30.0%
TCCTAGAATTGCAATAAACA+TGG - chr8_4:55138949-55138968 Msa1334670:intron 30.0%
TCCATGTTTATTGCAATTCT+AGG + chr8_4:55138953-55138972 None:intergenic 30.0%
AAGAATCTACAACAAGGAAA+AGG - chr8_4:55139010-55139029 Msa1334670:CDS 30.0%
!! AAGTGTTGTTTACTGATTCA+AGG - chr8_4:55139050-55139069 Msa1334670:CDS 30.0%
AAATTAGGTTTGATTGTACC+AGG - chr8_4:55139185-55139204 Msa1334670:intron 30.0%
!!! CAGTACTACTTTTTCTAGTT+GGG + chr8_4:55139211-55139230 None:intergenic 30.0%
!!! ACAGTACTACTTTTTCTAGT+TGG + chr8_4:55139212-55139231 None:intergenic 30.0%
!!! CACCATTGATTTTGATATGA+TGG - chr8_4:55139350-55139369 Msa1334670:CDS 30.0%
GACCATCATATCAAAATCAA+TGG + chr8_4:55139355-55139374 None:intergenic 30.0%
! TCCATCATCATCTTTTCTTT+TGG - chr8_4:55139417-55139436 Msa1334670:CDS 30.0%
! CCATCATCATCTTTTCTTTT+GGG - chr8_4:55139418-55139437 Msa1334670:CDS 30.0%
! CATCATCATCTTTTCTTTTG+GGG - chr8_4:55139419-55139438 Msa1334670:CDS 30.0%
! ATCATCATCTTTTCTTTTGG+GGG - chr8_4:55139420-55139439 Msa1334670:CDS 30.0%
AATGACAAGAAGACAAAGCT+TGG + chr8_4:55137897-55137916 None:intergenic 35.0%
GAACCAATTGTTCAACATTG+GGG + chr8_4:55137986-55138005 None:intergenic 35.0%
CGAACCAATTGTTCAACATT+GGG + chr8_4:55137987-55138006 None:intergenic 35.0%
ACGAACCAATTGTTCAACAT+TGG + chr8_4:55137988-55138007 None:intergenic 35.0%
AACAAGAGATGTCGTCAATT+TGG - chr8_4:55138375-55138394 Msa1334670:CDS 35.0%
AGTGTTCAAAGAAATCTACC+TGG - chr8_4:55138608-55138627 Msa1334670:intron 35.0%
ACAGATATGGTTGCATTATC+AGG - chr8_4:55138689-55138708 Msa1334670:CDS 35.0%
TGTTTAGGTGCACATACAAT+TGG - chr8_4:55138803-55138822 Msa1334670:CDS 35.0%
CGTAGATTCTATTTGAGAAG+CGG + chr8_4:55138844-55138863 None:intergenic 35.0%
CGCTTCTCAAATAGAATCTA+CGG - chr8_4:55138842-55138861 Msa1334670:intron 35.0%
ATGGGTCAATTCTACTTCTT+GGG + chr8_4:55138874-55138893 None:intergenic 35.0%
!! GTTTACTGATTCAAGGTCAA+AGG - chr8_4:55139057-55139076 Msa1334670:CDS 35.0%
!! AAAGCACTCTCAAAAGCTTT+TGG + chr8_4:55139109-55139128 None:intergenic 35.0%
! ATGCTATTACTAAGTTGGGA+AGG - chr8_4:55139134-55139153 Msa1334670:CDS 35.0%
! TGCTATTACTAAGTTGGGAA+GGG - chr8_4:55139135-55139154 Msa1334670:CDS 35.0%
GGTGTTAAAACTGGTAATCA+AGG - chr8_4:55139160-55139179 Msa1334670:intron 35.0%
CTGGTAATCAAGGTGAAATT+AGG - chr8_4:55139170-55139189 Msa1334670:intron 35.0%
!! ACCATTGATTTGAGACTGAA+CGG - chr8_4:55139287-55139306 Msa1334670:intron 35.0%
TTTGATATGATGGTCGAGAT+CGG - chr8_4:55139360-55139379 Msa1334670:CDS 35.0%
CCCAAAAGAAAAGATGATGA+TGG + chr8_4:55139421-55139440 None:intergenic 35.0%
!! AGTTCTTTGAGGTATATTCC+TGG - chr8_4:55139494-55139513 Msa1334670:exon 35.0%
AATGACAAGAAGACAAAGCT+TGG + chr8_4:55137897-55137916 None:intergenic 35.0%
GAACCAATTGTTCAACATTG+GGG + chr8_4:55137986-55138005 None:intergenic 35.0%
CGAACCAATTGTTCAACATT+GGG + chr8_4:55137987-55138006 None:intergenic 35.0%
ACGAACCAATTGTTCAACAT+TGG + chr8_4:55137988-55138007 None:intergenic 35.0%
AACAAGAGATGTCGTCAATT+TGG - chr8_4:55138375-55138394 Msa1334670:CDS 35.0%
AGTGTTCAAAGAAATCTACC+TGG - chr8_4:55138608-55138627 Msa1334670:intron 35.0%
ACAGATATGGTTGCATTATC+AGG - chr8_4:55138689-55138708 Msa1334670:CDS 35.0%
TGTTTAGGTGCACATACAAT+TGG - chr8_4:55138803-55138822 Msa1334670:CDS 35.0%
CGTAGATTCTATTTGAGAAG+CGG + chr8_4:55138844-55138863 None:intergenic 35.0%
CGCTTCTCAAATAGAATCTA+CGG - chr8_4:55138842-55138861 Msa1334670:intron 35.0%
ATGGGTCAATTCTACTTCTT+GGG + chr8_4:55138874-55138893 None:intergenic 35.0%
!! GTTTACTGATTCAAGGTCAA+AGG - chr8_4:55139057-55139076 Msa1334670:CDS 35.0%
!! AAAGCACTCTCAAAAGCTTT+TGG + chr8_4:55139109-55139128 None:intergenic 35.0%
! ATGCTATTACTAAGTTGGGA+AGG - chr8_4:55139134-55139153 Msa1334670:CDS 35.0%
! TGCTATTACTAAGTTGGGAA+GGG - chr8_4:55139135-55139154 Msa1334670:CDS 35.0%
GGTGTTAAAACTGGTAATCA+AGG - chr8_4:55139160-55139179 Msa1334670:intron 35.0%
CTGGTAATCAAGGTGAAATT+AGG - chr8_4:55139170-55139189 Msa1334670:intron 35.0%
!! ACCATTGATTTGAGACTGAA+CGG - chr8_4:55139287-55139306 Msa1334670:intron 35.0%
TTTGATATGATGGTCGAGAT+CGG - chr8_4:55139360-55139379 Msa1334670:CDS 35.0%
CCCAAAAGAAAAGATGATGA+TGG + chr8_4:55139421-55139440 None:intergenic 35.0%
!! AGTTCTTTGAGGTATATTCC+TGG - chr8_4:55139494-55139513 Msa1334670:exon 35.0%
ATGCCCCAATGTTGAACAAT+TGG - chr8_4:55137980-55137999 Msa1334670:three_prime_UTR 40.0%
TCTTCCATGATTGCTTTGTC+AGG - chr8_4:55138069-55138088 Msa1334670:three_prime_UTR 40.0%
CTTCCATGATTGCTTTGTCA+GGG - chr8_4:55138070-55138089 Msa1334670:three_prime_UTR 40.0%
ATACCCTGACAAAGCAATCA+TGG + chr8_4:55138076-55138095 None:intergenic 40.0%
CCTGATGATATATCACTAGC+CGG - chr8_4:55138256-55138275 Msa1334670:CDS 40.0%
CTGATGATATATCACTAGCC+GGG - chr8_4:55138257-55138276 Msa1334670:CDS 40.0%
TGATGATATATCACTAGCCG+GGG - chr8_4:55138258-55138277 Msa1334670:CDS 40.0%
! CAGCACAAGAGACTTTGTTT+CGG + chr8_4:55138339-55138358 None:intergenic 40.0%
TATTGTGCAATATTGCAGGC+AGG - chr8_4:55138527-55138546 Msa1334670:CDS 40.0%
ATTGTGCAATATTGCAGGCA+GGG - chr8_4:55138528-55138547 Msa1334670:CDS 40.0%
TTCAAATTGAAATGAGGGCC+AGG + chr8_4:55138629-55138648 None:intergenic 40.0%
CAACCATATCTGTTTGAGAG+AGG + chr8_4:55138682-55138701 None:intergenic 40.0%
GATGGGTCAATTCTACTTCT+TGG + chr8_4:55138875-55138894 None:intergenic 40.0%
AAGGACACATTTGCCTAAGT+TGG + chr8_4:55138919-55138938 None:intergenic 40.0%
!!! CAAACTTTTGAGGTGAGACA+GGG + chr8_4:55138976-55138995 None:intergenic 40.0%
!!! TCAAACTTTTGAGGTGAGAC+AGG + chr8_4:55138977-55138996 None:intergenic 40.0%
! ATTACTAAGTTGGGAAGGGT+TGG - chr8_4:55139139-55139158 Msa1334670:CDS 40.0%
TACTGTTATGGCATCATCGT+CGG - chr8_4:55139226-55139245 Msa1334670:intron 40.0%
! TTCGGAAGCATGCAGTTATA+TGG - chr8_4:55139250-55139269 Msa1334670:intron 40.0%
ACCGTTCAGTCTCAAATCAA+TGG + chr8_4:55139291-55139310 None:intergenic 40.0%
ATGCCCCAATGTTGAACAAT+TGG - chr8_4:55137980-55137999 Msa1334670:three_prime_UTR 40.0%
TCTTCCATGATTGCTTTGTC+AGG - chr8_4:55138069-55138088 Msa1334670:three_prime_UTR 40.0%
CTTCCATGATTGCTTTGTCA+GGG - chr8_4:55138070-55138089 Msa1334670:three_prime_UTR 40.0%
ATACCCTGACAAAGCAATCA+TGG + chr8_4:55138076-55138095 None:intergenic 40.0%
CCTGATGATATATCACTAGC+CGG - chr8_4:55138256-55138275 Msa1334670:CDS 40.0%
CTGATGATATATCACTAGCC+GGG - chr8_4:55138257-55138276 Msa1334670:CDS 40.0%
TGATGATATATCACTAGCCG+GGG - chr8_4:55138258-55138277 Msa1334670:CDS 40.0%
! CAGCACAAGAGACTTTGTTT+CGG + chr8_4:55138339-55138358 None:intergenic 40.0%
TATTGTGCAATATTGCAGGC+AGG - chr8_4:55138527-55138546 Msa1334670:CDS 40.0%
ATTGTGCAATATTGCAGGCA+GGG - chr8_4:55138528-55138547 Msa1334670:CDS 40.0%
TTCAAATTGAAATGAGGGCC+AGG + chr8_4:55138629-55138648 None:intergenic 40.0%
CAACCATATCTGTTTGAGAG+AGG + chr8_4:55138682-55138701 None:intergenic 40.0%
GATGGGTCAATTCTACTTCT+TGG + chr8_4:55138875-55138894 None:intergenic 40.0%
AAGGACACATTTGCCTAAGT+TGG + chr8_4:55138919-55138938 None:intergenic 40.0%
!!! CAAACTTTTGAGGTGAGACA+GGG + chr8_4:55138976-55138995 None:intergenic 40.0%
!!! TCAAACTTTTGAGGTGAGAC+AGG + chr8_4:55138977-55138996 None:intergenic 40.0%
! ATTACTAAGTTGGGAAGGGT+TGG - chr8_4:55139139-55139158 Msa1334670:CDS 40.0%
TACTGTTATGGCATCATCGT+CGG - chr8_4:55139226-55139245 Msa1334670:intron 40.0%
! TTCGGAAGCATGCAGTTATA+TGG - chr8_4:55139250-55139269 Msa1334670:intron 40.0%
ACCGTTCAGTCTCAAATCAA+TGG + chr8_4:55139291-55139310 None:intergenic 40.0%
ATGGAAGAACAGTCTGAGAG+TGG + chr8_4:55138057-55138076 None:intergenic 45.0%
! GATTTTGCTTGCAACTCCGA+AGG - chr8_4:55138219-55138238 Msa1334670:CDS 45.0%
CCGGCTAGTGATATATCATC+AGG + chr8_4:55138259-55138278 None:intergenic 45.0%
!! CGGTTTTGACACTGTGGTTA+AGG - chr8_4:55138282-55138301 Msa1334670:CDS 45.0%
GCACTTAGGATCCCTATCAA+CGG + chr8_4:55138317-55138336 None:intergenic 45.0%
! GAGACTTTGTTTCGGCACTT+AGG + chr8_4:55138331-55138350 None:intergenic 45.0%
TTGTGCAATATTGCAGGCAG+GGG - chr8_4:55138529-55138548 Msa1334670:CDS 45.0%
! TTGAATTGGGAAGGCGTGAT+GGG - chr8_4:55138567-55138586 Msa1334670:intron 45.0%
GAGGCCATGGAGATTAAACA+TGG + chr8_4:55138663-55138682 None:intergenic 45.0%
TATCTGTTTGAGAGAGGCCA+TGG + chr8_4:55138676-55138695 None:intergenic 45.0%
TGGCCTCTCTCAAACAGATA+TGG - chr8_4:55138676-55138695 Msa1334670:CDS 45.0%
!! GGAAGGGTTGGTGTTAAAAC+TGG - chr8_4:55139151-55139170 Msa1334670:CDS 45.0%
!!! CTACTTTTTCTAGTTGGGCC+TGG + chr8_4:55139206-55139225 None:intergenic 45.0%
TATGGCATCATCGTCGGATT+CGG - chr8_4:55139232-55139251 Msa1334670:intron 45.0%
ATGGAAGAACAGTCTGAGAG+TGG + chr8_4:55138057-55138076 None:intergenic 45.0%
! GATTTTGCTTGCAACTCCGA+AGG - chr8_4:55138219-55138238 Msa1334670:CDS 45.0%
CCGGCTAGTGATATATCATC+AGG + chr8_4:55138259-55138278 None:intergenic 45.0%
!! CGGTTTTGACACTGTGGTTA+AGG - chr8_4:55138282-55138301 Msa1334670:CDS 45.0%
GCACTTAGGATCCCTATCAA+CGG + chr8_4:55138317-55138336 None:intergenic 45.0%
! GAGACTTTGTTTCGGCACTT+AGG + chr8_4:55138331-55138350 None:intergenic 45.0%
TTGTGCAATATTGCAGGCAG+GGG - chr8_4:55138529-55138548 Msa1334670:CDS 45.0%
! TTGAATTGGGAAGGCGTGAT+GGG - chr8_4:55138567-55138586 Msa1334670:intron 45.0%
GAGGCCATGGAGATTAAACA+TGG + chr8_4:55138663-55138682 None:intergenic 45.0%
TATCTGTTTGAGAGAGGCCA+TGG + chr8_4:55138676-55138695 None:intergenic 45.0%
TGGCCTCTCTCAAACAGATA+TGG - chr8_4:55138676-55138695 Msa1334670:CDS 45.0%
!! GGAAGGGTTGGTGTTAAAAC+TGG - chr8_4:55139151-55139170 Msa1334670:CDS 45.0%
!!! CTACTTTTTCTAGTTGGGCC+TGG + chr8_4:55139206-55139225 None:intergenic 45.0%
TATGGCATCATCGTCGGATT+CGG - chr8_4:55139232-55139251 Msa1334670:intron 45.0%
AAGAACAGTCTGAGAGTGGC+AGG + chr8_4:55138053-55138072 None:intergenic 50.0%
GATATATCACTAGCCGGGGA+CGG - chr8_4:55138262-55138281 Msa1334670:CDS 50.0%
TGACACTGTGGTTAAGGCCA+AGG - chr8_4:55138288-55138307 Msa1334670:CDS 50.0%
TGTGCAATATTGCAGGCAGG+GGG - chr8_4:55138530-55138549 Msa1334670:CDS 50.0%
! GTTGAATTGGGAAGGCGTGA+TGG - chr8_4:55138566-55138585 Msa1334670:intron 50.0%
AGATCGGTAACTGCGTCAAG+TGG - chr8_4:55139376-55139395 Msa1334670:CDS 50.0%
ACTGCGTCAAGTGGTTATGC+AGG - chr8_4:55139385-55139404 Msa1334670:CDS 50.0%
CTGCGTCAAGTGGTTATGCA+GGG - chr8_4:55139386-55139405 Msa1334670:CDS 50.0%
AAGAACAGTCTGAGAGTGGC+AGG + chr8_4:55138053-55138072 None:intergenic 50.0%
GATATATCACTAGCCGGGGA+CGG - chr8_4:55138262-55138281 Msa1334670:CDS 50.0%
TGACACTGTGGTTAAGGCCA+AGG - chr8_4:55138288-55138307 Msa1334670:CDS 50.0%
TGTGCAATATTGCAGGCAGG+GGG - chr8_4:55138530-55138549 Msa1334670:CDS 50.0%
! GTTGAATTGGGAAGGCGTGA+TGG - chr8_4:55138566-55138585 Msa1334670:intron 50.0%
AGATCGGTAACTGCGTCAAG+TGG - chr8_4:55139376-55139395 Msa1334670:CDS 50.0%
ACTGCGTCAAGTGGTTATGC+AGG - chr8_4:55139385-55139404 Msa1334670:CDS 50.0%
CTGCGTCAAGTGGTTATGCA+GGG - chr8_4:55139386-55139405 Msa1334670:CDS 50.0%
AGCTCAGCTCAACTCACTCG+TGG - chr8_4:55137942-55137961 Msa1334670:three_prime_UTR 55.0%
TTGCAACTCCGAAGGCAGAG+AGG - chr8_4:55138227-55138246 Msa1334670:CDS 55.0%
TGCAACTCCGAAGGCAGAGA+GGG - chr8_4:55138228-55138247 Msa1334670:CDS 55.0%
GGATGTTCCCTCTCTGCCTT+CGG + chr8_4:55138238-55138257 None:intergenic 55.0%
CACAGTGTCAAAACCGTCCC+CGG + chr8_4:55138278-55138297 None:intergenic 55.0%
ATCCCTATCAACGGCTGCCT+TGG + chr8_4:55138308-55138327 None:intergenic 55.0%
GTGCAATATTGCAGGCAGGG+GGG - chr8_4:55138531-55138550 Msa1334670:CDS 55.0%
AGCTCAGCTCAACTCACTCG+TGG - chr8_4:55137942-55137961 Msa1334670:three_prime_UTR 55.0%
TTGCAACTCCGAAGGCAGAG+AGG - chr8_4:55138227-55138246 Msa1334670:CDS 55.0%
TGCAACTCCGAAGGCAGAGA+GGG - chr8_4:55138228-55138247 Msa1334670:CDS 55.0%
GGATGTTCCCTCTCTGCCTT+CGG + chr8_4:55138238-55138257 None:intergenic 55.0%
CACAGTGTCAAAACCGTCCC+CGG + chr8_4:55138278-55138297 None:intergenic 55.0%
ATCCCTATCAACGGCTGCCT+TGG + chr8_4:55138308-55138327 None:intergenic 55.0%
GTGCAATATTGCAGGCAGGG+GGG - chr8_4:55138531-55138550 Msa1334670:CDS 55.0%
!! CGGGGACGGTTTTGACACTG+TGG - chr8_4:55138276-55138295 Msa1334670:CDS 60.0%
AGGCCAAGGCAGCCGTTGAT+AGG - chr8_4:55138302-55138321 Msa1334670:CDS 60.0%
GGCCAAGGCAGCCGTTGATA+GGG - chr8_4:55138303-55138322 Msa1334670:CDS 60.0%
!! CGGGGACGGTTTTGACACTG+TGG - chr8_4:55138276-55138295 Msa1334670:CDS 60.0%
AGGCCAAGGCAGCCGTTGAT+AGG - chr8_4:55138302-55138321 Msa1334670:CDS 60.0%
GGCCAAGGCAGCCGTTGATA+GGG - chr8_4:55138303-55138322 Msa1334670:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 55137862 55139521 55137862 ID=Msa1334670;Name=Msa1334670
chr8_4 mRNA 55137862 55139521 55137862 ID=Msa1334670-mRNA-1;Parent=Msa1334670;Name=Msa1334670-mRNA-1;_AED=0.07;_eAED=0.07;_QI=23|1|1|1|1|1|4|305|323
chr8_4 exon 55137862 55138573 55137862 ID=Msa1334670-mRNA-1:exon:17231;Parent=Msa1334670-mRNA-1
chr8_4 exon 55138673 55138838 55138673 ID=Msa1334670-mRNA-1:exon:17230;Parent=Msa1334670-mRNA-1
chr8_4 exon 55138987 55139178 55138987 ID=Msa1334670-mRNA-1:exon:17229;Parent=Msa1334670-mRNA-1
chr8_4 exon 55139292 55139521 55139292 ID=Msa1334670-mRNA-1:exon:17228;Parent=Msa1334670-mRNA-1
chr8_4 five_prime_UTR 55139499 55139521 55139499 ID=Msa1334670-mRNA-1:five_prime_utr;Parent=Msa1334670-mRNA-1
chr8_4 CDS 55139292 55139498 55139292 ID=Msa1334670-mRNA-1:cds;Parent=Msa1334670-mRNA-1
chr8_4 CDS 55138987 55139178 55138987 ID=Msa1334670-mRNA-1:cds;Parent=Msa1334670-mRNA-1
chr8_4 CDS 55138673 55138838 55138673 ID=Msa1334670-mRNA-1:cds;Parent=Msa1334670-mRNA-1
chr8_4 CDS 55138167 55138573 55138167 ID=Msa1334670-mRNA-1:cds;Parent=Msa1334670-mRNA-1
chr8_4 three_prime_UTR 55137862 55138166 55137862 ID=Msa1334670-mRNA-1:three_prime_utr;Parent=Msa1334670-mRNA-1
Gene Sequence

>Msa1334670

ATGGAAGCTCCAAGCTTTGTCTTCTTGTCATTGCTTCTTCTACTCACAGCTACAACAAGCTCAGCTCAACTCACTCGTGGCTTCTATAACAATGTATGCCCCAATGTTGAACAATTGGTTCGTTCTGCCGTGAATCAGAAGTTTCAACAAACATTTGTTACTGCTCCTGCCACTCTCAGACTGTTCTTCCATGATTGCTTTGTCAGGGGTTGTGATGCTTCGATTTTGCTTGCAACTCCGAAGGCAGAGAGGGAACATCCTGATGATATATCACTAGCCGGGGACGGTTTTGACACTGTGGTTAAGGCCAAGGCAGCCGTTGATAGGGATCCTAAGTGCCGAAACAAAGTCTCTTGTGCTGATATTCTTGCTCTCGCAACAAGAGATGTCGTCAATTTGGCAGGGGGGCCATTTTATAATGTTGAATTGGGAAGGCGTGATGGGAGAGTATCTACTATAGCAAGTGTTCAAAGAAATCTACCTGGCCCTCATTTCAATTTGAATCAGCTTAATACCATGTTTAATCTCCATGGCCTCTCTCAAACAGATATGGTTGCATTATCAGGTGCACATACAATTGGATTCTCTCATTGCAACCGCTTCTCAAATAGAATCTACGGATTCAGCCCAAGAAGTAGAATTGACCCATCATTAAATTTACAATATGCTTTCCAACTTAGGCAAATGTGTCCTTTAAGAGTTGATCCTAGAATTGCAATAAACATGGACCCTGTCTCACCTCAAAAGTTTGACAATCAATATTTCAAGAATCTACAACAAGGAAAAGGTCTATTCACTTCTGATCAAGTGTTGTTTACTGATTCAAGGTCAAAGGCTACAGTCAACTTATTTGCATCAAATCCAAAAGCTTTTGAGAGTGCTTTTATTAATGCTATTACTAAGTTGGGAAGGGTTGGTGTTAAAACTGGTAATCAAGGTGAAATTAGGTTTGATTGTACCAGGCCCAACTAG
Protein sequence

>Msa1334670

MEAPSFVFLSLLLLLTATTSSAQLTRGFYNNVCPNVEQLVRSAVNQKFQQTFVTAPATLRLFFHDCFVRGCDASILLATPKAEREHPDDISLAGDGFDTVVKAKAAVDRDPKCRNKVSCADILALATRDVVNLAGGPFYNVELGRRDGRVSTIASVQRNLPGPHFNLNQLNTMFNLHGLSQTDMVALSGAHTIGFSHCNRFSNRIYGFSPRSRIDPSLNLQYAFQLRQMCPLRVDPRIAINMDPVSPQKFDNQYFKNLQQGKGLFTSDQVLFTDSRSKATVNLFASNPKAFESAFINAITKLGRVGVKTGNQGEIRFDCTRPN*