AlfalfaGEDB | Msa0398050

M. sativa cultivar zhongmu-4 / Msa0398050

KEGG: K19613
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398050	XP_039687802.1	68.074	379	59	4	1	317	268	646	7.71e-157	464

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398050	sp\|Q9LRR4\|R13L1_ARATH	28.351	388	165	13	1	310	664	1016	3.73e-24	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398050	A0A396IN44	68.074	379	59	4	1	317	268	646	3.68e-157	464

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0101810	Msa0398050	-0.804593	2.005585e-49	-8.615850e-47
Msa0144790	Msa0398050	0.806327	8.682695e-50	-8.615850e-47
Msa0350870	Msa0398050	0.806910	6.539164e-50	-8.615850e-47
Msa0398050	Msa0443290	0.827122	1.862255e-54	-8.615850e-47
Msa0398050	Msa0490870	0.814229	1.713744e-51	-8.615850e-47
Msa0398050	Msa0492880	0.847663	1.003126e-59	-8.615850e-47
Msa0398050	Msa0498220	0.824360	8.420362e-54	-8.615850e-47
Msa0398050	Msa0626280	0.833713	4.553486e-56	-8.615850e-47
Msa0398050	Msa0658570	0.804495	2.101974e-49	-8.615850e-47
Msa0398050	Msa0664570	0.815967	7.048521e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398050	MtrunA17_Chr3g0086071	68.074	379	59	4	1	317	268	646	7.09e-161	464
Msa0398050	MtrunA17_Chr3g0086221	66.931	378	60	5	1	313	647	1024	6.26e-151	453
Msa0398050	MtrunA17_Chr3g0086091	63.077	390	77	5	1	323	459	848	2.07e-147	439
Msa0398050	MtrunA17_Chr3g0086621	64.800	375	70	4	1	313	648	1022	4.99e-147	443
Msa0398050	MtrunA17_Chr3g0086161	64.721	377	69	4	1	313	648	1024	7.23e-145	437
Msa0398050	MtrunA17_Chr3g0087581	59.947	377	87	4	1	313	649	1025	1.15e-131	403
Msa0398050	MtrunA17_Chr3g0085801	57.480	381	94	4	1	313	628	1008	2.84e-129	394
Msa0398050	MtrunA17_Chr3g0087701	55.467	375	104	5	1	313	652	1025	1.80e-118	368
Msa0398050	MtrunA17_Chr3g0085451	53.316	392	114	5	1	323	634	1025	1.26e-107	338
Msa0398050	MtrunA17_Chr3g0087541	51.842	380	116	4	1	313	667	1046	3.17e-104	330

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398050	AT3G14470.1	28.351	388	165	13	1	310	664	1016	3.80e-25	107
Msa0398050	AT3G14470.2	28.351	388	165	13	1	310	664	1016	3.80e-25	107

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Find 78 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATTTCTTCGAGAG+AGG	0.580772	3_2:-18375887	Msa0398050:CDS
AAAAGTGGAGTCCTTCCCAG+AGG	0.770799	3_2:-18375806	Msa0398050:CDS
AAATTAAGATACACAAGAGT+TGG	0.528078	3_2:+18375769	None:intergenic
AACTTGGCAAATTGGATAAG+TGG	0.453139	3_2:-18376591	Msa0398050:CDS
AACTTTAACTCTTCAAGAAA+GGG	0.467042	3_2:+18376132	None:intergenic
AAGAAAATGCCAAAGCAGAT+AGG	0.380273	3_2:-18376915	None:intergenic
AAGATACAAAGGTATTAACT+TGG	0.567268	3_2:-18376607	Msa0398050:intron
AAGCTATGCCTTTGTGATAA+TGG	0.295449	3_2:-18376195	Msa0398050:CDS
AAGGTATTAACTTGGCAAAT+TGG	0.297879	3_2:-18376599	Msa0398050:CDS
AATCAAAACGCAGAATTTCA+AGG	0.463176	3_2:+18376460	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAACTTTGTATTTCAGGAT+TGG	-	chr3_2:18375880-18375899	Msa0398050:intron	30.0%
CAGTTGAAAAGATACTAAGT+TGG	+	chr3_2:18376122-18376141	None:intergenic	30.0%
ATCAAAACGCAGAATTTCAA+GGG	+	chr3_2:18376218-18376237	None:intergenic	30.0%
AATCAAAACGCAGAATTTCA+AGG	+	chr3_2:18376219-18376238	None:intergenic	30.0%
CTCTATCATATTATCACTCT+TGG	+	chr3_2:18376404-18376423	None:intergenic	30.0%
CAACTTTAACTCTTCAAGAA+AGG	+	chr3_2:18376548-18376567	None:intergenic	30.0%
CTTTCTTGAAGAGTTAAAGT+TGG	-	chr3_2:18376546-18376565	Msa0398050:CDS	30.0%
CTACACTTTCAATAAAAGGA+TGG	-	chr3_2:18376626-18376645	Msa0398050:intron	30.0%
ACACTTTCAATAAAAGGATG+GGG	-	chr3_2:18376628-18376647	Msa0398050:intron	30.0%
TTGGGCAATTTAATATTGAC+AGG	+	chr3_2:18376771-18376790	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	18375767	18376931	18375767	ID=Msa0398050;Name=Msa0398050
chr3_2	mRNA	18375767	18376931	18375767	ID=Msa0398050-mRNA-1;Parent=Msa0398050;Name=Msa0398050-mRNA-1;_AED=0.43;_eAED=0.48;_QI=0\|0\|0\|1\|0\|0\|5\|0\|337
chr3_2	exon	18376715	18376931	18376715	ID=Msa0398050-mRNA-1:exon:4127;Parent=Msa0398050-mRNA-1
chr3_2	exon	18376381	18376618	18376381	ID=Msa0398050-mRNA-1:exon:4126;Parent=Msa0398050-mRNA-1
chr3_2	exon	18376135	18376371	18376135	ID=Msa0398050-mRNA-1:exon:4125;Parent=Msa0398050-mRNA-1
chr3_2	exon	18375881	18376122	18375881	ID=Msa0398050-mRNA-1:exon:4124;Parent=Msa0398050-mRNA-1
chr3_2	exon	18375767	18375846	18375767	ID=Msa0398050-mRNA-1:exon:4123;Parent=Msa0398050-mRNA-1
chr3_2	CDS	18376715	18376931	18376715	ID=Msa0398050-mRNA-1:cds;Parent=Msa0398050-mRNA-1
chr3_2	CDS	18376381	18376618	18376381	ID=Msa0398050-mRNA-1:cds;Parent=Msa0398050-mRNA-1
chr3_2	CDS	18376135	18376371	18376135	ID=Msa0398050-mRNA-1:cds;Parent=Msa0398050-mRNA-1
chr3_2	CDS	18375881	18376122	18375881	ID=Msa0398050-mRNA-1:cds;Parent=Msa0398050-mRNA-1
chr3_2	CDS	18375767	18375846	18375767	ID=Msa0398050-mRNA-1:cds;Parent=Msa0398050-mRNA-1

Gene Sequence

>Msa0398050

ATGCCAAAGCAGATAGGGATTCTAAACCATCTTCAAACGTTGAGTGATTTTGTTGTGGGAGAGGAGAATGGGTCTAATATTCAGGAGTTGGGTTATCTCAATCGTCTTCAAGGGAAACTTTGTATTTCAGGATTGGAACATGTCATTAATCCCGAAGATGCCGCAGGAGCAAATTTGAAAGATAAGAAACATGTAGAAGAACTATATATGAATTATGGTATTAACTTGGCAAATTGGATAAGTGGTTGTCATTTACCCAACTTAGTATCTTTTCAACTGCACAGCTGTGATAGGATAAGGATCATAGGGAAAGAATTTTATGGCAATAATTCAACAAATGTATCATTCAGATCCCTTGAAATTCTGCGTTTTGATTCGATGTCGGATTGGGAGGAATGGTCATGTCTTGAAGGGTTTCCTTTGCTTAAAGAGCTTTTTATAAGAAAATGTCCCAAGGCTCTGCCTCAACACCTTCCTTCTTTACAAAAATTGTTTATTAATGATTGCAACAAGTTGGAGGCATCAATTCCCAAGAGTGATAATATGATAGAGTTAAATATACAGAGATGTTATAGAATTTTGGTAAATGAATTGCCGGCCAGCTTGAAAAAGCTATGCCTTTGTGATAATGGGTGCACCGAGTTCTCAGTGGACCAAAATTTAATCAATTTTCCCTTTCTTGAAGAGTTAAATGGCTTTGTAAACTGTCCTTCTTTGGATTTACGTTGCTATAATTCCCTTTCTACACTTTCAATAAAAGGATGGGGATCCTCCTCCTTGCCTTTTTCACTACACTTGTTCACCAAACTTCATTATCTCAAATTGACCGATTGCCCAGAGCTGGAATCGTTTCCAATGGGTGGTTTGCCTTCCAACTTGAGGGACCTGTCAATATTAAATTGCCCAAAACTGATTTCTTCGAGAGAGGAGTGGGTGTTAGTGATGAGTTTGAAAAAGTGGAGTCCTTCCCAGAGGAGAATCTGCTGCCACCAACTCTTGTGTATCTTAATTTGA

Protein sequence

>Msa0398050

MPKQIGILNHLQTLSDFVVGEENGSNIQELGYLNRLQGKLCISGLEHVINPEDAAGANLKDKKHVEELYMNYGINLANWISGCHLPNLVSFQLHSCDRIRIIGKEFYGNNSTNVSFRSLEILRFDSMSDWEEWSCLEGFPLLKELFIRKCPKALPQHLPSLQKLFINDCNKLEASIPKSDNMIELNIQRCYRILVNELPASLKKLCLCDNGCTEFSVDQNLINFPFLEELNGFVNCPSLDLRCYNSLSTLSIKGWGSSSLPFSLHLFTKLHYLKLTDCPELESFPMGGLPSNLRDLSILNCPKLISSREEWVLVMSLKKWSPSQRRICCHQLLCILI*