Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398050 | XP_039687802.1 | 68.074 | 379 | 59 | 4 | 1 | 317 | 268 | 646 | 7.71e-157 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398050 | sp|Q9LRR4|R13L1_ARATH | 28.351 | 388 | 165 | 13 | 1 | 310 | 664 | 1016 | 3.73e-24 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398050 | A0A396IN44 | 68.074 | 379 | 59 | 4 | 1 | 317 | 268 | 646 | 3.68e-157 | 464 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101810 | Msa0398050 | -0.804593 | 2.005585e-49 | -8.615850e-47 |
| Msa0144790 | Msa0398050 | 0.806327 | 8.682695e-50 | -8.615850e-47 |
| Msa0398050 | Msa0443290 | 0.827122 | 1.862255e-54 | -8.615850e-47 |
| Msa0398050 | Msa0490870 | 0.814229 | 1.713744e-51 | -8.615850e-47 |
| Msa0398050 | Msa0492880 | 0.847663 | 1.003126e-59 | -8.615850e-47 |
| Msa0398050 | Msa0498220 | 0.824360 | 8.420362e-54 | -8.615850e-47 |
| Msa0398050 | Msa0626280 | 0.833713 | 4.553486e-56 | -8.615850e-47 |
| Msa0398050 | Msa0658570 | 0.804495 | 2.101974e-49 | -8.615850e-47 |
| Msa0398050 | Msa0664570 | 0.815967 | 7.048521e-52 | -8.615850e-47 |
| Msa0398050 | Msa0802470 | -0.803516 | 3.358315e-49 | -8.615850e-47 |
| Msa0398050 | Msa0912480 | 0.803843 | 2.872846e-49 | -8.615850e-47 |
| Msa0398050 | Msa1188720 | 0.811035 | 8.562528e-51 | -8.615850e-47 |
| Msa0398050 | Msa1229600 | 0.801189 | 1.012375e-48 | -8.615850e-47 |
| Msa0398050 | Msa1393410 | 0.808826 | 2.558870e-50 | -8.615850e-47 |
| Msa0398050 | Msa1435420 | 0.806349 | 8.588538e-50 | -8.615850e-47 |
| Msa0350870 | Msa0398050 | 0.806910 | 6.539164e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398050 | MtrunA17_Chr3g0086071 | 68.074 | 379 | 59 | 4 | 1 | 317 | 268 | 646 | 7.09e-161 | 464 |
| Msa0398050 | MtrunA17_Chr3g0086221 | 66.931 | 378 | 60 | 5 | 1 | 313 | 647 | 1024 | 6.26e-151 | 453 |
| Msa0398050 | MtrunA17_Chr3g0086091 | 63.077 | 390 | 77 | 5 | 1 | 323 | 459 | 848 | 2.07e-147 | 439 |
| Msa0398050 | MtrunA17_Chr3g0086621 | 64.800 | 375 | 70 | 4 | 1 | 313 | 648 | 1022 | 4.99e-147 | 443 |
| Msa0398050 | MtrunA17_Chr3g0086161 | 64.721 | 377 | 69 | 4 | 1 | 313 | 648 | 1024 | 7.23e-145 | 437 |
| Msa0398050 | MtrunA17_Chr3g0087581 | 59.947 | 377 | 87 | 4 | 1 | 313 | 649 | 1025 | 1.15e-131 | 403 |
| Msa0398050 | MtrunA17_Chr3g0085801 | 57.480 | 381 | 94 | 4 | 1 | 313 | 628 | 1008 | 2.84e-129 | 394 |
| Msa0398050 | MtrunA17_Chr3g0087701 | 55.467 | 375 | 104 | 5 | 1 | 313 | 652 | 1025 | 1.80e-118 | 368 |
| Msa0398050 | MtrunA17_Chr3g0085451 | 53.316 | 392 | 114 | 5 | 1 | 323 | 634 | 1025 | 1.26e-107 | 338 |
| Msa0398050 | MtrunA17_Chr3g0087541 | 51.842 | 380 | 116 | 4 | 1 | 313 | 667 | 1046 | 3.17e-104 | 330 |
| Msa0398050 | MtrunA17_Chr3g0084081 | 50.535 | 374 | 124 | 7 | 1 | 313 | 663 | 1036 | 2.26e-101 | 322 |
| Msa0398050 | MtrunA17_Chr3g0085521 | 48.601 | 393 | 132 | 6 | 1 | 323 | 645 | 1037 | 2.24e-99 | 317 |
| Msa0398050 | MtrunA17_Chr3g0085701 | 47.570 | 391 | 135 | 6 | 1 | 321 | 457 | 847 | 3.22e-96 | 305 |
| Msa0398050 | MtrunA17_Chr3g0085751 | 48.031 | 381 | 130 | 5 | 1 | 313 | 648 | 1028 | 2.13e-95 | 306 |
| Msa0398050 | MtrunA17_Chr3g0087731 | 48.238 | 369 | 106 | 7 | 1 | 323 | 451 | 780 | 6.64e-94 | 298 |
| Msa0398050 | MtrunA17_Chr3g0085711 | 47.074 | 393 | 138 | 6 | 1 | 323 | 220 | 612 | 5.00e-93 | 291 |
| Msa0398050 | MtrunA17_Chr3g0084051 | 47.179 | 390 | 131 | 8 | 1 | 323 | 663 | 1044 | 2.19e-91 | 295 |
| Msa0398050 | MtrunA17_Chr3g0085131 | 45.714 | 385 | 147 | 5 | 1 | 323 | 650 | 1034 | 7.62e-89 | 288 |
| Msa0398050 | MtrunA17_Chr3g0084061 | 45.269 | 391 | 144 | 6 | 1 | 323 | 661 | 1049 | 3.96e-87 | 284 |
| Msa0398050 | MtrunA17_Chr3g0084031 | 45.876 | 388 | 145 | 7 | 1 | 323 | 665 | 1052 | 2.57e-86 | 281 |
| Msa0398050 | MtrunA17_Chr3g0085161 | 44.924 | 394 | 145 | 7 | 1 | 323 | 514 | 906 | 6.25e-86 | 278 |
| Msa0398050 | MtrunA17_Chr3g0085091 | 44.924 | 394 | 145 | 7 | 1 | 323 | 656 | 1048 | 1.98e-85 | 279 |
| Msa0398050 | MtrunA17_Chr3g0085651 | 76.000 | 200 | 41 | 3 | 131 | 323 | 1067 | 1266 | 9.51e-85 | 278 |
| Msa0398050 | MtrunA17_Chr3g0085651 | 43.360 | 369 | 139 | 9 | 1 | 304 | 658 | 1021 | 7.48e-67 | 228 |
| Msa0398050 | MtrunA17_Chr3g0085651 | 38.614 | 202 | 107 | 9 | 118 | 307 | 918 | 1114 | 3.55e-17 | 82.8 |
| Msa0398050 | MtrunA17_Chr3g0085791 | 81.707 | 164 | 26 | 1 | 154 | 313 | 8 | 171 | 3.95e-84 | 256 |
| Msa0398050 | MtrunA17_Chr3g0085481 | 44.474 | 371 | 94 | 6 | 5 | 267 | 1 | 367 | 2.01e-83 | 257 |
| Msa0398050 | MtrunA17_Chr3g0085331 | 72.906 | 203 | 48 | 2 | 118 | 313 | 934 | 1136 | 4.25e-83 | 273 |
| Msa0398050 | MtrunA17_Chr3g0085331 | 40.924 | 303 | 110 | 8 | 1 | 239 | 672 | 969 | 1.49e-49 | 177 |
| Msa0398050 | MtrunA17_Chr3g0082791 | 48.980 | 343 | 116 | 7 | 1 | 285 | 664 | 1005 | 2.03e-82 | 269 |
| Msa0398050 | MtrunA17_Chr3g0085111 | 44.162 | 394 | 146 | 9 | 1 | 323 | 651 | 1041 | 6.01e-82 | 269 |
| Msa0398050 | MtrunA17_Chr3g0086151 | 59.746 | 236 | 37 | 3 | 1 | 178 | 648 | 883 | 1.64e-79 | 259 |
| Msa0398050 | MtrunA17_Chr3g0086181 | 60.169 | 236 | 37 | 3 | 1 | 179 | 648 | 883 | 8.70e-79 | 258 |
| Msa0398050 | MtrunA17_Chr3g0085471 | 75.824 | 182 | 37 | 2 | 139 | 313 | 982 | 1163 | 1.36e-78 | 261 |
| Msa0398050 | MtrunA17_Chr3g0085471 | 36.119 | 371 | 162 | 13 | 1 | 307 | 662 | 1021 | 5.44e-42 | 155 |
| Msa0398050 | MtrunA17_Chr3g0085171 | 41.371 | 394 | 160 | 6 | 1 | 323 | 640 | 1033 | 9.53e-78 | 258 |
| Msa0398050 | MtrunA17_Chr3g0085501 | 73.626 | 182 | 41 | 2 | 139 | 313 | 952 | 1133 | 6.66e-73 | 244 |
| Msa0398050 | MtrunA17_Chr3g0085501 | 36.719 | 384 | 143 | 13 | 1 | 319 | 672 | 1020 | 8.41e-48 | 172 |
| Msa0398050 | MtrunA17_Chr3g0091011 | 43.202 | 331 | 120 | 5 | 1 | 263 | 632 | 962 | 5.71e-70 | 235 |
| Msa0398050 | MtrunA17_Chr3g0085431 | 45.455 | 242 | 69 | 3 | 1 | 179 | 261 | 502 | 6.67e-55 | 187 |
| Msa0398050 | MtrunA17_Chr3g0085561 | 39.597 | 298 | 112 | 8 | 1 | 233 | 648 | 942 | 3.11e-45 | 165 |
| Msa0398050 | MtrunA17_Chr3g0085561 | 64.062 | 64 | 20 | 1 | 118 | 178 | 912 | 975 | 1.60e-14 | 74.7 |
| Msa0398050 | MtrunA17_Chr7g0221481 | 47.368 | 190 | 43 | 2 | 1 | 133 | 659 | 848 | 3.57e-41 | 153 |
| Msa0398050 | MtrunA17_Chr3g0085551 | 40.952 | 210 | 65 | 2 | 1 | 151 | 540 | 749 | 2.99e-39 | 147 |
| Msa0398050 | MtrunA17_Chr8g0352831 | 32.533 | 375 | 180 | 11 | 1 | 306 | 679 | 1049 | 4.93e-39 | 147 |
| Msa0398050 | MtrunA17_Chr1g0169901 | 33.158 | 380 | 164 | 14 | 1 | 306 | 654 | 1017 | 5.54e-37 | 141 |
| Msa0398050 | MtrunA17_Chr8g0352861 | 31.714 | 391 | 194 | 11 | 1 | 320 | 674 | 1062 | 1.02e-36 | 140 |
| Msa0398050 | MtrunA17_Chr3g0083751 | 30.542 | 406 | 175 | 12 | 1 | 306 | 665 | 1063 | 2.51e-33 | 130 |
| Msa0398050 | MtrunA17_Chr3g0084041 | 39.062 | 192 | 60 | 2 | 1 | 135 | 1 | 192 | 3.85e-33 | 122 |
| Msa0398050 | MtrunA17_Chr3g0113791 | 31.496 | 381 | 173 | 14 | 1 | 304 | 646 | 1015 | 2.00e-31 | 125 |
| Msa0398050 | MtrunA17_Chr3g0080871 | 29.925 | 401 | 181 | 12 | 1 | 306 | 648 | 1043 | 2.07e-31 | 125 |
| Msa0398050 | MtrunA17_Chr3g0086741 | 39.583 | 192 | 57 | 3 | 1 | 133 | 677 | 868 | 2.10e-31 | 124 |
| Msa0398050 | MtrunA17_Chr8g0356251 | 31.325 | 415 | 169 | 13 | 1 | 306 | 686 | 1093 | 2.21e-31 | 125 |
| Msa0398050 | MtrunA17_Chr3g0091121 | 30.871 | 379 | 155 | 11 | 1 | 310 | 273 | 613 | 4.12e-31 | 123 |
| Msa0398050 | MtrunA17_Chr4g0020501 | 29.973 | 367 | 180 | 10 | 1 | 304 | 535 | 887 | 7.62e-31 | 123 |
| Msa0398050 | MtrunA17_Chr1g0164581 | 30.446 | 404 | 182 | 12 | 1 | 306 | 646 | 1048 | 1.45e-30 | 122 |
| Msa0398050 | MtrunA17_Chr3g0082131 | 30.446 | 404 | 182 | 12 | 1 | 306 | 670 | 1072 | 2.13e-30 | 122 |
| Msa0398050 | MtrunA17_Chr4g0008461 | 30.556 | 396 | 185 | 12 | 1 | 306 | 644 | 1039 | 9.01e-30 | 120 |
| Msa0398050 | MtrunA17_Chr3g0089211 | 29.383 | 405 | 168 | 15 | 1 | 306 | 709 | 1094 | 9.38e-30 | 120 |
| Msa0398050 | MtrunA17_Chr3g0084971 | 27.518 | 407 | 196 | 11 | 1 | 310 | 653 | 1057 | 9.89e-30 | 120 |
| Msa0398050 | MtrunA17_Chr3g0091971 | 29.730 | 407 | 185 | 13 | 1 | 306 | 590 | 996 | 6.39e-29 | 117 |
| Msa0398050 | MtrunA17_Chr3g0113781 | 33.597 | 253 | 103 | 6 | 1 | 190 | 441 | 691 | 1.38e-28 | 116 |
| Msa0398050 | MtrunA17_Chr3g0090141 | 29.491 | 373 | 159 | 13 | 1 | 304 | 662 | 999 | 2.48e-28 | 115 |
| Msa0398050 | MtrunA17_Chr3g0083641 | 29.557 | 406 | 179 | 12 | 1 | 306 | 636 | 1034 | 6.17e-28 | 114 |
| Msa0398050 | MtrunA17_Chr3g0090371 | 28.418 | 373 | 163 | 11 | 1 | 304 | 661 | 998 | 3.58e-27 | 112 |
| Msa0398050 | MtrunA17_Chr3g0083721 | 29.240 | 342 | 160 | 9 | 1 | 260 | 603 | 944 | 1.49e-26 | 110 |
| Msa0398050 | MtrunA17_Chr3g0083621 | 27.381 | 420 | 195 | 11 | 1 | 319 | 671 | 1081 | 1.59e-26 | 110 |
| Msa0398050 | MtrunA17_Chr2g0299121 | 32.963 | 270 | 115 | 8 | 1 | 205 | 669 | 937 | 1.63e-26 | 110 |
| Msa0398050 | MtrunA17_Chr2g0299091 | 33.333 | 270 | 114 | 8 | 1 | 205 | 643 | 911 | 2.36e-26 | 110 |
| Msa0398050 | MtrunA17_Chr3g0089441 | 28.960 | 404 | 173 | 17 | 1 | 306 | 168 | 555 | 2.43e-26 | 110 |
| Msa0398050 | MtrunA17_Chr3g0084811 | 29.016 | 386 | 171 | 11 | 1 | 304 | 811 | 1175 | 3.09e-26 | 109 |
| Msa0398050 | MtrunA17_Chr2g0299151 | 28.438 | 429 | 181 | 14 | 1 | 306 | 653 | 1078 | 4.93e-26 | 109 |
| Msa0398050 | MtrunA17_Chr3g0091061 | 27.778 | 396 | 186 | 14 | 1 | 306 | 663 | 1048 | 6.56e-26 | 108 |
| Msa0398050 | MtrunA17_Chr3g0089651 | 26.984 | 378 | 162 | 11 | 1 | 304 | 666 | 1003 | 1.06e-25 | 108 |
| Msa0398050 | MtrunA17_Chr3g0083591 | 28.500 | 400 | 184 | 11 | 1 | 306 | 625 | 1016 | 1.06e-25 | 108 |
| Msa0398050 | MtrunA17_Chr3g0089251 | 27.226 | 393 | 162 | 13 | 1 | 290 | 691 | 1062 | 1.29e-25 | 108 |
| Msa0398050 | MtrunA17_Chr2g0282991 | 27.603 | 413 | 200 | 12 | 1 | 318 | 658 | 1066 | 4.61e-25 | 106 |
| Msa0398050 | MtrunA17_Chr3g0089811 | 27.318 | 399 | 186 | 13 | 1 | 306 | 662 | 1049 | 1.58e-24 | 104 |
| Msa0398050 | MtrunA17_Chr1g0168901 | 32.035 | 231 | 90 | 6 | 1 | 164 | 631 | 861 | 2.50e-24 | 103 |
| Msa0398050 | MtrunA17_Chr3g0089541 | 28.571 | 392 | 189 | 14 | 1 | 306 | 665 | 1051 | 2.66e-24 | 103 |
| Msa0398050 | MtrunA17_Chr3g0083681 | 29.310 | 406 | 178 | 14 | 1 | 306 | 637 | 1033 | 2.77e-24 | 103 |
| Msa0398050 | MtrunA17_Chr3g0089421 | 28.382 | 377 | 157 | 11 | 1 | 304 | 664 | 1000 | 4.68e-24 | 103 |
| Msa0398050 | MtrunA17_Chr3g0090691 | 28.463 | 397 | 177 | 17 | 1 | 304 | 663 | 1045 | 8.27e-24 | 102 |
| Msa0398050 | MtrunA17_Chr1g0147141 | 29.048 | 420 | 175 | 18 | 1 | 323 | 664 | 1057 | 1.40e-23 | 102 |
| Msa0398050 | MtrunA17_Chr3g0089781 | 27.688 | 372 | 155 | 12 | 1 | 298 | 662 | 993 | 1.93e-23 | 101 |
| Msa0398050 | MtrunA17_Chr3g0089871 | 27.792 | 385 | 186 | 13 | 1 | 306 | 665 | 1036 | 8.19e-23 | 99.8 |
| Msa0398050 | MtrunA17_Chr3g0089591 | 27.294 | 425 | 203 | 12 | 1 | 319 | 713 | 1137 | 9.89e-23 | 99.4 |
| Msa0398050 | MtrunA17_Chr2g0309721 | 27.970 | 404 | 166 | 17 | 1 | 301 | 659 | 1040 | 1.24e-22 | 99.4 |
| Msa0398050 | MtrunA17_Chr3g0090651 | 26.316 | 361 | 162 | 10 | 1 | 293 | 663 | 987 | 1.62e-22 | 98.6 |
| Msa0398050 | MtrunA17_Chr1g0164611 | 27.907 | 387 | 167 | 12 | 1 | 284 | 674 | 1051 | 1.89e-22 | 98.6 |
| Msa0398050 | MtrunA17_Chr7g0248531 | 33.750 | 240 | 91 | 8 | 1 | 172 | 649 | 888 | 2.30e-22 | 98.2 |
| Msa0398050 | MtrunA17_Chr3g0091081 | 26.882 | 372 | 174 | 12 | 1 | 304 | 661 | 1002 | 2.92e-22 | 98.2 |
| Msa0398050 | MtrunA17_Chr3g0089761 | 27.047 | 403 | 180 | 14 | 1 | 306 | 662 | 1047 | 4.93e-22 | 97.4 |
| Msa0398050 | MtrunA17_Chr3g0089991 | 28.307 | 378 | 188 | 14 | 1 | 306 | 666 | 1032 | 5.67e-22 | 97.4 |
| Msa0398050 | MtrunA17_Chr3g0087841 | 32.245 | 245 | 98 | 7 | 1 | 177 | 662 | 906 | 7.18e-22 | 97.1 |
| Msa0398050 | MtrunA17_Chr3g0089961 | 29.675 | 246 | 104 | 7 | 1 | 177 | 665 | 910 | 9.09e-22 | 96.7 |
| Msa0398050 | MtrunA17_Chr3g0090431 | 27.273 | 418 | 188 | 14 | 1 | 306 | 534 | 947 | 1.53e-21 | 95.9 |
| Msa0398050 | MtrunA17_Chr3g0090401 | 26.882 | 372 | 150 | 12 | 1 | 304 | 873 | 1190 | 2.87e-21 | 95.1 |
| Msa0398050 | MtrunA17_Chr8g0348931 | 27.536 | 414 | 174 | 14 | 1 | 298 | 668 | 1071 | 4.17e-20 | 91.7 |
| Msa0398050 | MtrunA17_Chr3g0082101 | 24.725 | 364 | 150 | 8 | 1 | 304 | 622 | 921 | 1.24e-19 | 90.1 |
| Msa0398050 | MtrunA17_Chr3g0092261 | 25.945 | 397 | 193 | 14 | 1 | 306 | 706 | 1092 | 2.41e-19 | 89.4 |
| Msa0398050 | MtrunA17_Chr4g0025391 | 27.407 | 405 | 177 | 15 | 1 | 306 | 660 | 1046 | 5.55e-19 | 88.2 |
| Msa0398050 | MtrunA17_Chr3g0092241 | 25.945 | 397 | 193 | 14 | 1 | 306 | 662 | 1048 | 1.48e-18 | 87.0 |
| Msa0398050 | MtrunA17_Chr3g0082351 | 31.308 | 214 | 85 | 6 | 1 | 152 | 662 | 875 | 3.89e-18 | 85.9 |
| Msa0398050 | MtrunA17_Chr3g0082311 | 28.992 | 238 | 105 | 7 | 1 | 174 | 664 | 901 | 2.62e-17 | 83.2 |
| Msa0398050 | MtrunA17_Chr3g0082311 | 28.175 | 252 | 124 | 7 | 64 | 304 | 864 | 1069 | 5.00e-12 | 67.0 |
| Msa0398050 | MtrunA17_Chr2g0308471 | 43.810 | 105 | 50 | 3 | 84 | 179 | 17 | 121 | 4.64e-17 | 76.6 |
| Msa0398050 | MtrunA17_Chr1g0164391 | 30.045 | 223 | 85 | 5 | 1 | 152 | 665 | 887 | 5.35e-17 | 82.4 |
| Msa0398050 | MtrunA17_Chr1g0164391 | 25.000 | 288 | 173 | 9 | 84 | 328 | 896 | 1183 | 5.13e-13 | 70.1 |
| Msa0398050 | MtrunA17_Chr2g0299101 | 32.461 | 191 | 70 | 5 | 1 | 133 | 669 | 858 | 1.59e-16 | 80.9 |
| Msa0398050 | MtrunA17_Chr3g0085621 | 61.429 | 70 | 25 | 1 | 246 | 313 | 83 | 152 | 5.79e-16 | 77.0 |
| Msa0398050 | MtrunA17_Chr1g0164631 | 28.395 | 324 | 149 | 8 | 1 | 241 | 670 | 993 | 7.90e-16 | 78.6 |
| Msa0398050 | MtrunA17_Chr1g0189521 | 36.283 | 113 | 36 | 1 | 15 | 91 | 3 | 115 | 1.12e-15 | 73.2 |
| Msa0398050 | MtrunA17_Chr3g0078351 | 30.303 | 297 | 140 | 13 | 71 | 309 | 61 | 348 | 9.56e-15 | 74.7 |
| Msa0398050 | MtrunA17_Chr3g0089921 | 29.323 | 266 | 127 | 12 | 84 | 306 | 52 | 299 | 9.89e-15 | 75.1 |
| Msa0398050 | MtrunA17_Chr6g0468121 | 27.295 | 403 | 189 | 16 | 2 | 306 | 637 | 1033 | 5.40e-14 | 73.2 |
| Msa0398050 | MtrunA17_Chr6g0468271 | 27.457 | 346 | 191 | 13 | 2 | 309 | 633 | 956 | 2.15e-13 | 71.2 |
| Msa0398050 | MtrunA17_Chr6g0468201 | 28.070 | 342 | 170 | 15 | 2 | 306 | 241 | 543 | 2.17e-13 | 71.2 |
| Msa0398050 | MtrunA17_Chr3g0082401 | 27.536 | 276 | 147 | 8 | 84 | 306 | 71 | 346 | 9.57e-13 | 68.9 |
| Msa0398050 | MtrunA17_Chr5g0431051 | 31.014 | 345 | 154 | 15 | 1 | 282 | 644 | 967 | 1.96e-12 | 68.6 |
| Msa0398050 | MtrunA17_Chr5g0430341 | 29.240 | 342 | 164 | 12 | 1 | 282 | 186 | 509 | 2.31e-12 | 67.8 |
| Msa0398050 | MtrunA17_Chr5g0430511 | 28.455 | 369 | 174 | 17 | 1 | 304 | 643 | 986 | 2.36e-12 | 68.2 |
| Msa0398050 | MtrunA17_Chr6g0468101 | 26.426 | 333 | 149 | 10 | 2 | 256 | 597 | 911 | 3.19e-12 | 67.8 |
| Msa0398050 | MtrunA17_Chr6g0468151 | 28.869 | 336 | 183 | 16 | 1 | 306 | 641 | 950 | 3.87e-12 | 67.4 |
| Msa0398050 | MtrunA17_Chr5g0430581 | 29.155 | 343 | 163 | 13 | 1 | 282 | 635 | 958 | 6.14e-12 | 67.0 |
| Msa0398050 | MtrunA17_Chr5g0415551 | 29.032 | 186 | 72 | 4 | 1 | 128 | 520 | 703 | 1.04e-11 | 65.9 |
| Msa0398050 | MtrunA17_Chr3g0082321 | 29.545 | 176 | 102 | 4 | 1 | 174 | 610 | 765 | 1.46e-11 | 65.5 |
| Msa0398050 | MtrunA17_Chr7g0244231 | 28.493 | 365 | 164 | 15 | 1 | 282 | 634 | 984 | 1.47e-11 | 65.9 |
| Msa0398050 | MtrunA17_Chr8g0392501 | 26.457 | 223 | 115 | 7 | 98 | 304 | 3 | 192 | 2.32e-11 | 63.2 |
| Msa0398050 | MtrunA17_Chr1g0155991 | 28.571 | 357 | 170 | 18 | 1 | 304 | 639 | 963 | 3.27e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0398050 | AT3G14470.1 | 28.351 | 388 | 165 | 13 | 1 | 310 | 664 | 1016 | 3.80e-25 | 107 |
| Msa0398050 | AT3G14470.2 | 28.351 | 388 | 165 | 13 | 1 | 310 | 664 | 1016 | 3.80e-25 | 107 |
Find 78 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGGAAACTTTGTATTTC+AGG | 0.106917 | 3_2:-18376801 | Msa0398050:CDS |
| ACAGAGATGTTATAGAATTT+TGG | 0.175641 | 3_2:-18376244 | Msa0398050:CDS |
| AGGGAAAATTGATTAAATTT+TGG | 0.179655 | 3_2:+18376151 | None:intergenic |
| CTTTCTACACTTTCAATAAA+AGG | 0.180831 | 3_2:-18376054 | Msa0398050:CDS |
| CTTTGTAAACTGTCCTTCTT+TGG | 0.199736 | 3_2:-18376097 | Msa0398050:CDS |
| ATTTGCTCCTGCGGCATCTT+CGG | 0.240156 | 3_2:+18376758 | None:intergenic |
| TCTCTCGAAGAAATCAGTTT+TGG | 0.285440 | 3_2:+18375889 | None:intergenic |
| AAGCTATGCCTTTGTGATAA+TGG | 0.295449 | 3_2:-18376195 | Msa0398050:CDS |
| AAGGTATTAACTTGGCAAAT+TGG | 0.297879 | 3_2:-18376599 | Msa0398050:CDS |
| GTGAACAAGTGTAGTGAAAA+AGG | 0.300630 | 3_2:+18376012 | None:intergenic |
| TTTGCTCCTGCGGCATCTTC+GGG | 0.308094 | 3_2:+18376759 | None:intergenic |
| GAAGAACTATATATGAATTA+TGG | 0.327613 | 3_2:-18376714 | Msa0398050:intron |
| CTCTATCATATTATCACTCT+TGG | 0.349067 | 3_2:+18376275 | None:intergenic |
| GGAGAATGGGTCTAATATTC+AGG | 0.362088 | 3_2:-18376847 | Msa0398050:CDS |
| AAGAAAATGCCAAAGCAGAT+AGG | 0.380273 | 3_2:-18376915 | None:intergenic |
| TGGTTTGCCTTCCAACTTGA+GGG | 0.386061 | 3_2:-18375932 | Msa0398050:CDS |
| TTTAGAATCCCTATCTGCTT+TGG | 0.392495 | 3_2:+18376906 | None:intergenic |
| CAATTTGAGATAATGAAGTT+TGG | 0.396970 | 3_2:+18375990 | None:intergenic |
| GGTTATCTCAATCGTCTTCA+AGG | 0.399792 | 3_2:-18376819 | Msa0398050:CDS |
| TGTGATAGGATAAGGATCAT+AGG | 0.407496 | 3_2:-18376528 | Msa0398050:CDS |
| ATTGGAAACGATTCCAGCTC+TGG | 0.407922 | 3_2:+18375958 | None:intergenic |
| CAACTTTAACTCTTCAAGAA+AGG | 0.410188 | 3_2:+18376131 | None:intergenic |
| TTCAACTGCACAGCTGTGAT+AGG | 0.418286 | 3_2:-18376542 | Msa0398050:CDS |
| GAAACTTTGTATTTCAGGAT+TGG | 0.418664 | 3_2:-18376796 | Msa0398050:CDS |
| AGCTATGCCTTTGTGATAAT+GGG | 0.438386 | 3_2:-18376194 | Msa0398050:CDS |
| TTTGTTGTGGGAGAGGAGAA+TGG | 0.449648 | 3_2:-18376861 | Msa0398050:CDS |
| TACACTTTCAATAAAAGGAT+GGG | 0.452267 | 3_2:-18376049 | Msa0398050:CDS |
| AACTTGGCAAATTGGATAAG+TGG | 0.453139 | 3_2:-18376591 | Msa0398050:CDS |
| CGATTCCAGCTCTGGGCAAT+CGG | 0.453777 | 3_2:+18375966 | None:intergenic |
| TTGTTGTGGGAGAGGAGAAT+GGG | 0.459770 | 3_2:-18376860 | Msa0398050:CDS |
| TGGGTCTAATATTCAGGAGT+TGG | 0.461107 | 3_2:-18376841 | Msa0398050:CDS |
| TTGGGCAATTTAATATTGAC+AGG | 0.461994 | 3_2:+18375908 | None:intergenic |
| GGGTCTAATATTCAGGAGTT+GGG | 0.462825 | 3_2:-18376840 | Msa0398050:CDS |
| AATCAAAACGCAGAATTTCA+AGG | 0.463176 | 3_2:+18376460 | None:intergenic |
| AACTTTAACTCTTCAAGAAA+GGG | 0.467042 | 3_2:+18376132 | None:intergenic |
| GGTGGCAGCAGATTCTCCTC+TGG | 0.467246 | 3_2:+18375790 | None:intergenic |
| CTACACTTTCAATAAAAGGA+TGG | 0.472192 | 3_2:-18376050 | Msa0398050:CDS |
| AATCACTCAACGTTTGAAGA+TGG | 0.477009 | 3_2:+18376883 | None:intergenic |
| TCTATCATATTATCACTCTT+GGG | 0.479625 | 3_2:+18376276 | None:intergenic |
| ATTGACCGATTGCCCAGAGC+TGG | 0.486785 | 3_2:-18375971 | Msa0398050:CDS |
| TATTAATGATTGCAACAAGT+TGG | 0.490894 | 3_2:-18376310 | Msa0398050:CDS |
| GTGGCAGCAGATTCTCCTCT+GGG | 0.495482 | 3_2:+18375791 | None:intergenic |
| TGCACAGCTGTGATAGGATA+AGG | 0.496696 | 3_2:-18376536 | Msa0398050:CDS |
| AGAAAATGCCAAAGCAGATA+GGG | 0.499663 | 3_2:-18376914 | None:intergenic |
| GAGGAATGGTCATGTCTTGA+AGG | 0.514576 | 3_2:-18376423 | Msa0398050:CDS |
| GATTTCTTCGAGAGAGGAGT+GGG | 0.515831 | 3_2:-18375881 | Msa0398050:CDS |
| TATTGACAGGTCCCTCAAGT+TGG | 0.522200 | 3_2:+18375921 | None:intergenic |
| ATCTTTCAAATTTGCTCCTG+CGG | 0.526005 | 3_2:+18376749 | None:intergenic |
| CTGGAATCGTTTCCAATGGG+TGG | 0.527478 | 3_2:-18375952 | Msa0398050:CDS |
| AAATTAAGATACACAAGAGT+TGG | 0.528078 | 3_2:+18375769 | None:intergenic |
| TAATGATTGCAACAAGTTGG+AGG | 0.529032 | 3_2:-18376307 | Msa0398050:CDS |
| GTGATAGGATAAGGATCATA+GGG | 0.530977 | 3_2:-18376527 | Msa0398050:CDS |
| TGTAAAGAAGGAAGGTGTTG+AGG | 0.538289 | 3_2:+18376342 | None:intergenic |
| GTGGTTTGCCTTCCAACTTG+AGG | 0.544031 | 3_2:-18375933 | Msa0398050:CDS |
| AGTTGAAAAGATACTAAGTT+GGG | 0.549132 | 3_2:+18376558 | None:intergenic |
| TTGGAAGGCAAACCACCCAT+TGG | 0.551700 | 3_2:+18375940 | None:intergenic |
| CGATGTCGGATTGGGAGGAA+TGG | 0.554168 | 3_2:-18376437 | Msa0398050:CDS |
| TAGCAACGTAAATCCAAAGA+AGG | 0.555748 | 3_2:+18376084 | None:intergenic |
| GAGCTGGAATCGTTTCCAAT+GGG | 0.557247 | 3_2:-18375955 | Msa0398050:CDS |
| TTAAGATACACAAGAGTTGG+TGG | 0.559367 | 3_2:+18375772 | None:intergenic |
| AGAGCTGGAATCGTTTCCAA+TGG | 0.560069 | 3_2:-18375956 | Msa0398050:CDS |
| TGATTCGATGTCGGATTGGG+AGG | 0.564201 | 3_2:-18376442 | Msa0398050:CDS |
| AGGAATGGTCATGTCTTGAA+GGG | 0.566079 | 3_2:-18376422 | Msa0398050:CDS |
| AAGATACAAAGGTATTAACT+TGG | 0.567268 | 3_2:-18376607 | Msa0398050:intron |
| TTGGAAACGATTCCAGCTCT+GGG | 0.567380 | 3_2:+18375959 | None:intergenic |
| ACACTTTCAATAAAAGGATG+GGG | 0.568534 | 3_2:-18376048 | Msa0398050:CDS |
| GTTATCTCAATCGTCTTCAA+GGG | 0.573572 | 3_2:-18376818 | Msa0398050:CDS |
| AAAACTGATTTCTTCGAGAG+AGG | 0.580772 | 3_2:-18375887 | Msa0398050:CDS |
| CAGTTGAAAAGATACTAAGT+TGG | 0.580958 | 3_2:+18376557 | None:intergenic |
| CAGCAGATTCTCCTCTGGGA+AGG | 0.590753 | 3_2:+18375795 | None:intergenic |
| ATCAAAACGCAGAATTTCAA+GGG | 0.594062 | 3_2:+18376461 | None:intergenic |
| ATTAATCCCGAAGATGCCGC+AGG | 0.596991 | 3_2:-18376765 | Msa0398050:CDS |
| GACAGGTCCCTCAAGTTGGA+AGG | 0.599501 | 3_2:+18375925 | None:intergenic |
| TGATTTCTTCGAGAGAGGAG+TGG | 0.600655 | 3_2:-18375882 | Msa0398050:CDS |
| CGGTGCACCCATTATCACAA+AGG | 0.662582 | 3_2:+18376187 | None:intergenic |
| TGGGTGCACCGAGTTCTCAG+TGG | 0.693947 | 3_2:-18376175 | Msa0398050:CDS |
| ATTTCTTCGAGAGAGGAGTG+GGG | 0.698400 | 3_2:-18375880 | Msa0398050:intron |
| AAAAGTGGAGTCCTTCCCAG+AGG | 0.770799 | 3_2:-18375806 | Msa0398050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAACAATTTTTGTAAAGA+AGG | + | chr3_2:18376349-18376368 | None:intergenic | 15.0% |
| !!! | ATAAACAATTTTTGTAAAGA+AGG | + | chr3_2:18376349-18376368 | None:intergenic | 15.0% |
| !! | GAAGAACTATATATGAATTA+TGG | - | chr3_2:18375962-18375981 | Msa0398050:CDS | 20.0% |
| !!! | AGGGAAAATTGATTAAATTT+TGG | + | chr3_2:18376528-18376547 | None:intergenic | 20.0% |
| !!! | TTTTATTGAAAGTGTAGAAA+GGG | + | chr3_2:18376623-18376642 | None:intergenic | 20.0% |
| !! | GAAGAACTATATATGAATTA+TGG | - | chr3_2:18375962-18375981 | Msa0398050:CDS | 20.0% |
| !!! | AGGGAAAATTGATTAAATTT+TGG | + | chr3_2:18376528-18376547 | None:intergenic | 20.0% |
| !!! | TTTTATTGAAAGTGTAGAAA+GGG | + | chr3_2:18376623-18376642 | None:intergenic | 20.0% |
| ! | CTTTACATCAAAAGATACAA+AGG | - | chr3_2:18376058-18376077 | Msa0398050:CDS | 25.0% |
| !!! | AAGATACAAAGGTATTAACT+TGG | - | chr3_2:18376069-18376088 | Msa0398050:CDS | 25.0% |
| ! | AGTTGAAAAGATACTAAGTT+GGG | + | chr3_2:18376121-18376140 | None:intergenic | 25.0% |
| !! | ATCATAGGGAAAGAATTTTA+TGG | - | chr3_2:18376163-18376182 | Msa0398050:CDS | 25.0% |
| ! | ATAAAAAGCTCTTTAAGCAA+AGG | + | chr3_2:18376283-18376302 | None:intergenic | 25.0% |
| !! | ACAATTTTTGTAAAGAAGGA+AGG | + | chr3_2:18376345-18376364 | None:intergenic | 25.0% |
| ! | TATTAATGATTGCAACAAGT+TGG | - | chr3_2:18376366-18376385 | Msa0398050:intron | 25.0% |
| ! | TCTATCATATTATCACTCTT+GGG | + | chr3_2:18376403-18376422 | None:intergenic | 25.0% |
| !! | ACAGAGATGTTATAGAATTT+TGG | - | chr3_2:18376432-18376451 | Msa0398050:CDS | 25.0% |
| !!! | AATTTTGGTAAATGAATTGC+CGG | - | chr3_2:18376447-18376466 | Msa0398050:CDS | 25.0% |
| ! | AACTTTAACTCTTCAAGAAA+GGG | + | chr3_2:18376547-18376566 | None:intergenic | 25.0% |
| !!! | CTTTTATTGAAAGTGTAGAA+AGG | + | chr3_2:18376624-18376643 | None:intergenic | 25.0% |
| ! | CTTTCTACACTTTCAATAAA+AGG | - | chr3_2:18376622-18376641 | Msa0398050:intron | 25.0% |
| ! | TACACTTTCAATAAAAGGAT+GGG | - | chr3_2:18376627-18376646 | Msa0398050:intron | 25.0% |
| !! | CAATTTGAGATAATGAAGTT+TGG | + | chr3_2:18376689-18376708 | None:intergenic | 25.0% |
| ! | ATATTTCCAGAGAATTTAGT+TGG | + | chr3_2:18376828-18376847 | None:intergenic | 25.0% |
| ! | AAATTAAGATACACAAGAGT+TGG | + | chr3_2:18376910-18376929 | None:intergenic | 25.0% |
| ! | CTTTACATCAAAAGATACAA+AGG | - | chr3_2:18376058-18376077 | Msa0398050:CDS | 25.0% |
| !!! | AAGATACAAAGGTATTAACT+TGG | - | chr3_2:18376069-18376088 | Msa0398050:CDS | 25.0% |
| ! | AGTTGAAAAGATACTAAGTT+GGG | + | chr3_2:18376121-18376140 | None:intergenic | 25.0% |
| !! | ATCATAGGGAAAGAATTTTA+TGG | - | chr3_2:18376163-18376182 | Msa0398050:CDS | 25.0% |
| ! | ATAAAAAGCTCTTTAAGCAA+AGG | + | chr3_2:18376283-18376302 | None:intergenic | 25.0% |
| !! | ACAATTTTTGTAAAGAAGGA+AGG | + | chr3_2:18376345-18376364 | None:intergenic | 25.0% |
| ! | TATTAATGATTGCAACAAGT+TGG | - | chr3_2:18376366-18376385 | Msa0398050:intron | 25.0% |
| ! | TCTATCATATTATCACTCTT+GGG | + | chr3_2:18376403-18376422 | None:intergenic | 25.0% |
| !! | ACAGAGATGTTATAGAATTT+TGG | - | chr3_2:18376432-18376451 | Msa0398050:CDS | 25.0% |
| !!! | AATTTTGGTAAATGAATTGC+CGG | - | chr3_2:18376447-18376466 | Msa0398050:CDS | 25.0% |
| ! | AACTTTAACTCTTCAAGAAA+GGG | + | chr3_2:18376547-18376566 | None:intergenic | 25.0% |
| !!! | CTTTTATTGAAAGTGTAGAA+AGG | + | chr3_2:18376624-18376643 | None:intergenic | 25.0% |
| ! | CTTTCTACACTTTCAATAAA+AGG | - | chr3_2:18376622-18376641 | Msa0398050:intron | 25.0% |
| ! | TACACTTTCAATAAAAGGAT+GGG | - | chr3_2:18376627-18376646 | Msa0398050:intron | 25.0% |
| !! | CAATTTGAGATAATGAAGTT+TGG | + | chr3_2:18376689-18376708 | None:intergenic | 25.0% |
| ! | ATATTTCCAGAGAATTTAGT+TGG | + | chr3_2:18376828-18376847 | None:intergenic | 25.0% |
| ! | AAATTAAGATACACAAGAGT+TGG | + | chr3_2:18376910-18376929 | None:intergenic | 25.0% |
| GAAACTTTGTATTTCAGGAT+TGG | - | chr3_2:18375880-18375899 | Msa0398050:intron | 30.0% | |
| ! | AAGGTATTAACTTGGCAAAT+TGG | - | chr3_2:18376077-18376096 | Msa0398050:CDS | 30.0% |
| CAGTTGAAAAGATACTAAGT+TGG | + | chr3_2:18376122-18376141 | None:intergenic | 30.0% | |
| ATCAAAACGCAGAATTTCAA+GGG | + | chr3_2:18376218-18376237 | None:intergenic | 30.0% | |
| AATCAAAACGCAGAATTTCA+AGG | + | chr3_2:18376219-18376238 | None:intergenic | 30.0% | |
| ! | AAAATGTCCCAAGTTGAAAA+GGG | - | chr3_2:18376306-18376325 | Msa0398050:CDS | 30.0% |
| CTCTATCATATTATCACTCT+TGG | + | chr3_2:18376404-18376423 | None:intergenic | 30.0% | |
| CAACTTTAACTCTTCAAGAA+AGG | + | chr3_2:18376548-18376567 | None:intergenic | 30.0% | |
| CTTTCTTGAAGAGTTAAAGT+TGG | - | chr3_2:18376546-18376565 | Msa0398050:CDS | 30.0% | |
| CTACACTTTCAATAAAAGGA+TGG | - | chr3_2:18376626-18376645 | Msa0398050:intron | 30.0% | |
| ACACTTTCAATAAAAGGATG+GGG | - | chr3_2:18376628-18376647 | Msa0398050:intron | 30.0% | |
| TTGGGCAATTTAATATTGAC+AGG | + | chr3_2:18376771-18376790 | None:intergenic | 30.0% | |
| TTTGTTCCAACTAAATTCTC+TGG | - | chr3_2:18376819-18376838 | Msa0398050:CDS | 30.0% | |
| TAGTGATGAGTTTGAAAAAG+TGG | - | chr3_2:18376855-18376874 | Msa0398050:CDS | 30.0% | |
| GAAACTTTGTATTTCAGGAT+TGG | - | chr3_2:18375880-18375899 | Msa0398050:intron | 30.0% | |
| ! | AAGGTATTAACTTGGCAAAT+TGG | - | chr3_2:18376077-18376096 | Msa0398050:CDS | 30.0% |
| CAGTTGAAAAGATACTAAGT+TGG | + | chr3_2:18376122-18376141 | None:intergenic | 30.0% | |
| ATCAAAACGCAGAATTTCAA+GGG | + | chr3_2:18376218-18376237 | None:intergenic | 30.0% | |
| AATCAAAACGCAGAATTTCA+AGG | + | chr3_2:18376219-18376238 | None:intergenic | 30.0% | |
| ! | AAAATGTCCCAAGTTGAAAA+GGG | - | chr3_2:18376306-18376325 | Msa0398050:CDS | 30.0% |
| CTCTATCATATTATCACTCT+TGG | + | chr3_2:18376404-18376423 | None:intergenic | 30.0% | |
| CAACTTTAACTCTTCAAGAA+AGG | + | chr3_2:18376548-18376567 | None:intergenic | 30.0% | |
| CTTTCTTGAAGAGTTAAAGT+TGG | - | chr3_2:18376546-18376565 | Msa0398050:CDS | 30.0% | |
| CTACACTTTCAATAAAAGGA+TGG | - | chr3_2:18376626-18376645 | Msa0398050:intron | 30.0% | |
| ACACTTTCAATAAAAGGATG+GGG | - | chr3_2:18376628-18376647 | Msa0398050:intron | 30.0% | |
| TTGGGCAATTTAATATTGAC+AGG | + | chr3_2:18376771-18376790 | None:intergenic | 30.0% | |
| TTTGTTCCAACTAAATTCTC+TGG | - | chr3_2:18376819-18376838 | Msa0398050:CDS | 30.0% | |
| TAGTGATGAGTTTGAAAAAG+TGG | - | chr3_2:18376855-18376874 | Msa0398050:CDS | 30.0% | |
| ! | TTTAGAATCCCTATCTGCTT+TGG | + | chr3_2:18375773-18375792 | None:intergenic | 35.0% |
| AATCACTCAACGTTTGAAGA+TGG | + | chr3_2:18375796-18375815 | None:intergenic | 35.0% | |
| ! | AACGTTGAGTGATTTTGTTG+TGG | - | chr3_2:18375802-18375821 | Msa0398050:CDS | 35.0% |
| !! | ACGTTGAGTGATTTTGTTGT+GGG | - | chr3_2:18375803-18375822 | Msa0398050:CDS | 35.0% |
| GTTATCTCAATCGTCTTCAA+GGG | - | chr3_2:18375858-18375877 | Msa0398050:intron | 35.0% | |
| CAAGGGAAACTTTGTATTTC+AGG | - | chr3_2:18375875-18375894 | Msa0398050:intron | 35.0% | |
| ! | ATCTTTCAAATTTGCTCCTG+CGG | + | chr3_2:18375930-18375949 | None:intergenic | 35.0% |
| GGTGACAAATTCAACAACAA+TGG | - | chr3_2:18375983-18376002 | Msa0398050:CDS | 35.0% | |
| AACCAAATAGCAACTTGAAG+AGG | - | chr3_2:18376035-18376054 | Msa0398050:CDS | 35.0% | |
| AACTTGGCAAATTGGATAAG+TGG | - | chr3_2:18376085-18376104 | Msa0398050:CDS | 35.0% | |
| TGTGATAGGATAAGGATCAT+AGG | - | chr3_2:18376148-18376167 | Msa0398050:CDS | 35.0% | |
| GTGATAGGATAAGGATCATA+GGG | - | chr3_2:18376149-18376168 | Msa0398050:CDS | 35.0% | |
| !! | TTTTGATTCGATGTCGGATT+GGG | - | chr3_2:18376231-18376250 | Msa0398050:CDS | 35.0% |
| ! | GAAAATGTCCCAAGTTGAAA+AGG | - | chr3_2:18376305-18376324 | Msa0398050:CDS | 35.0% |
| ! | TAATGATTGCAACAAGTTGG+AGG | - | chr3_2:18376369-18376388 | Msa0398050:intron | 35.0% |
| AAGCTATGCCTTTGTGATAA+TGG | - | chr3_2:18376481-18376500 | Msa0398050:CDS | 35.0% | |
| AGCTATGCCTTTGTGATAAT+GGG | - | chr3_2:18376482-18376501 | Msa0398050:CDS | 35.0% | |
| GAGTTAAAGTTGGATTGTAG+TGG | - | chr3_2:18376556-18376575 | Msa0398050:CDS | 35.0% | |
| CTTTGTAAACTGTCCTTCTT+TGG | - | chr3_2:18376579-18376598 | Msa0398050:CDS | 35.0% | |
| TAGCAACGTAAATCCAAAGA+AGG | + | chr3_2:18376595-18376614 | None:intergenic | 35.0% | |
| GTGAACAAGTGTAGTGAAAA+AGG | + | chr3_2:18376667-18376686 | None:intergenic | 35.0% | |
| ! | CTCTCGAAGAAATCAGTTTT+GGG | + | chr3_2:18376789-18376808 | None:intergenic | 35.0% |
| ! | TCTCTCGAAGAAATCAGTTT+TGG | + | chr3_2:18376790-18376809 | None:intergenic | 35.0% |
| ! | AAAACTGATTTCTTCGAGAG+AGG | - | chr3_2:18376789-18376808 | Msa0398050:CDS | 35.0% |
| TTAAGATACACAAGAGTTGG+TGG | + | chr3_2:18376907-18376926 | None:intergenic | 35.0% | |
| ! | TTTAGAATCCCTATCTGCTT+TGG | + | chr3_2:18375773-18375792 | None:intergenic | 35.0% |
| AATCACTCAACGTTTGAAGA+TGG | + | chr3_2:18375796-18375815 | None:intergenic | 35.0% | |
| ! | AACGTTGAGTGATTTTGTTG+TGG | - | chr3_2:18375802-18375821 | Msa0398050:CDS | 35.0% |
| !! | ACGTTGAGTGATTTTGTTGT+GGG | - | chr3_2:18375803-18375822 | Msa0398050:CDS | 35.0% |
| GTTATCTCAATCGTCTTCAA+GGG | - | chr3_2:18375858-18375877 | Msa0398050:intron | 35.0% | |
| CAAGGGAAACTTTGTATTTC+AGG | - | chr3_2:18375875-18375894 | Msa0398050:intron | 35.0% | |
| ! | ATCTTTCAAATTTGCTCCTG+CGG | + | chr3_2:18375930-18375949 | None:intergenic | 35.0% |
| GGTGACAAATTCAACAACAA+TGG | - | chr3_2:18375983-18376002 | Msa0398050:CDS | 35.0% | |
| AACCAAATAGCAACTTGAAG+AGG | - | chr3_2:18376035-18376054 | Msa0398050:CDS | 35.0% | |
| AACTTGGCAAATTGGATAAG+TGG | - | chr3_2:18376085-18376104 | Msa0398050:CDS | 35.0% | |
| TGTGATAGGATAAGGATCAT+AGG | - | chr3_2:18376148-18376167 | Msa0398050:CDS | 35.0% | |
| GTGATAGGATAAGGATCATA+GGG | - | chr3_2:18376149-18376168 | Msa0398050:CDS | 35.0% | |
| !! | TTTTGATTCGATGTCGGATT+GGG | - | chr3_2:18376231-18376250 | Msa0398050:CDS | 35.0% |
| ! | GAAAATGTCCCAAGTTGAAA+AGG | - | chr3_2:18376305-18376324 | Msa0398050:CDS | 35.0% |
| ! | TAATGATTGCAACAAGTTGG+AGG | - | chr3_2:18376369-18376388 | Msa0398050:intron | 35.0% |
| AAGCTATGCCTTTGTGATAA+TGG | - | chr3_2:18376481-18376500 | Msa0398050:CDS | 35.0% | |
| AGCTATGCCTTTGTGATAAT+GGG | - | chr3_2:18376482-18376501 | Msa0398050:CDS | 35.0% | |
| GAGTTAAAGTTGGATTGTAG+TGG | - | chr3_2:18376556-18376575 | Msa0398050:CDS | 35.0% | |
| CTTTGTAAACTGTCCTTCTT+TGG | - | chr3_2:18376579-18376598 | Msa0398050:CDS | 35.0% | |
| TAGCAACGTAAATCCAAAGA+AGG | + | chr3_2:18376595-18376614 | None:intergenic | 35.0% | |
| GTGAACAAGTGTAGTGAAAA+AGG | + | chr3_2:18376667-18376686 | None:intergenic | 35.0% | |
| ! | CTCTCGAAGAAATCAGTTTT+GGG | + | chr3_2:18376789-18376808 | None:intergenic | 35.0% |
| ! | TCTCTCGAAGAAATCAGTTT+TGG | + | chr3_2:18376790-18376809 | None:intergenic | 35.0% |
| ! | AAAACTGATTTCTTCGAGAG+AGG | - | chr3_2:18376789-18376808 | Msa0398050:CDS | 35.0% |
| TTAAGATACACAAGAGTTGG+TGG | + | chr3_2:18376907-18376926 | None:intergenic | 35.0% | |
| GGAGAATGGGTCTAATATTC+AGG | - | chr3_2:18375829-18375848 | Msa0398050:intron | 40.0% | |
| TGGGTCTAATATTCAGGAGT+TGG | - | chr3_2:18375835-18375854 | Msa0398050:intron | 40.0% | |
| GGGTCTAATATTCAGGAGTT+GGG | - | chr3_2:18375836-18375855 | Msa0398050:intron | 40.0% | |
| GGTTATCTCAATCGTCTTCA+AGG | - | chr3_2:18375857-18375876 | Msa0398050:intron | 40.0% | |
| CAACAACAATGGAAGAGAAC+TGG | - | chr3_2:18375994-18376013 | Msa0398050:CDS | 40.0% | |
| !! | AGCCTCTTCAAGTTGCTATT+TGG | + | chr3_2:18376040-18376059 | None:intergenic | 40.0% |
| !!! | TCTGCGTTTTGATTCGATGT+CGG | - | chr3_2:18376225-18376244 | Msa0398050:CDS | 40.0% |
| !!! | GTTTTGATTCGATGTCGGAT+TGG | - | chr3_2:18376230-18376249 | Msa0398050:CDS | 40.0% |
| AGGAATGGTCATGTCTTGAA+GGG | - | chr3_2:18376254-18376273 | Msa0398050:CDS | 40.0% | |
| !! | TGTAAAGAAGGAAGGTGTTG+AGG | + | chr3_2:18376337-18376356 | None:intergenic | 40.0% |
| !!! | AAGGCATAGCTTTTTCAAGC+TGG | + | chr3_2:18376473-18376492 | None:intergenic | 40.0% |
| !! | ATTTTGGTCCACTGAGAACT+CGG | + | chr3_2:18376512-18376531 | None:intergenic | 40.0% |
| CAAGTGTAGTGAAAAAGGCA+AGG | + | chr3_2:18376662-18376681 | None:intergenic | 40.0% | |
| GGAGAATGGGTCTAATATTC+AGG | - | chr3_2:18375829-18375848 | Msa0398050:intron | 40.0% | |
| TGGGTCTAATATTCAGGAGT+TGG | - | chr3_2:18375835-18375854 | Msa0398050:intron | 40.0% | |
| GGGTCTAATATTCAGGAGTT+GGG | - | chr3_2:18375836-18375855 | Msa0398050:intron | 40.0% | |
| GGTTATCTCAATCGTCTTCA+AGG | - | chr3_2:18375857-18375876 | Msa0398050:intron | 40.0% | |
| CAACAACAATGGAAGAGAAC+TGG | - | chr3_2:18375994-18376013 | Msa0398050:CDS | 40.0% | |
| !! | AGCCTCTTCAAGTTGCTATT+TGG | + | chr3_2:18376040-18376059 | None:intergenic | 40.0% |
| !!! | TCTGCGTTTTGATTCGATGT+CGG | - | chr3_2:18376225-18376244 | Msa0398050:CDS | 40.0% |
| !!! | GTTTTGATTCGATGTCGGAT+TGG | - | chr3_2:18376230-18376249 | Msa0398050:CDS | 40.0% |
| AGGAATGGTCATGTCTTGAA+GGG | - | chr3_2:18376254-18376273 | Msa0398050:CDS | 40.0% | |
| !! | TGTAAAGAAGGAAGGTGTTG+AGG | + | chr3_2:18376337-18376356 | None:intergenic | 40.0% |
| !!! | AAGGCATAGCTTTTTCAAGC+TGG | + | chr3_2:18376473-18376492 | None:intergenic | 40.0% |
| !! | ATTTTGGTCCACTGAGAACT+CGG | + | chr3_2:18376512-18376531 | None:intergenic | 40.0% |
| CAAGTGTAGTGAAAAAGGCA+AGG | + | chr3_2:18376662-18376681 | None:intergenic | 40.0% | |
| !! | GAGTGATTTTGTTGTGGGAG+AGG | - | chr3_2:18375808-18375827 | Msa0398050:CDS | 45.0% |
| ! | TTTGTTGTGGGAGAGGAGAA+TGG | - | chr3_2:18375815-18375834 | Msa0398050:CDS | 45.0% |
| TTGTTGTGGGAGAGGAGAAT+GGG | - | chr3_2:18375816-18375835 | Msa0398050:CDS | 45.0% | |
| TTCAACTGCACAGCTGTGAT+AGG | - | chr3_2:18376134-18376153 | Msa0398050:intron | 45.0% | |
| TGCACAGCTGTGATAGGATA+AGG | - | chr3_2:18376140-18376159 | Msa0398050:CDS | 45.0% | |
| GAGGAATGGTCATGTCTTGA+AGG | - | chr3_2:18376253-18376272 | Msa0398050:CDS | 45.0% | |
| !!! | CATAGCTTTTTCAAGCTGGC+CGG | + | chr3_2:18376469-18376488 | None:intergenic | 45.0% |
| TAGTGAAAAAGGCAAGGAGG+AGG | + | chr3_2:18376656-18376675 | None:intergenic | 45.0% | |
| GTGTAGTGAAAAAGGCAAGG+AGG | + | chr3_2:18376659-18376678 | None:intergenic | 45.0% | |
| TTGGAAACGATTCCAGCTCT+GGG | + | chr3_2:18376720-18376739 | None:intergenic | 45.0% | |
| ATTGGAAACGATTCCAGCTC+TGG | + | chr3_2:18376721-18376740 | None:intergenic | 45.0% | |
| AGAGCTGGAATCGTTTCCAA+TGG | - | chr3_2:18376720-18376739 | Msa0398050:CDS | 45.0% | |
| GAGCTGGAATCGTTTCCAAT+GGG | - | chr3_2:18376721-18376740 | Msa0398050:CDS | 45.0% | |
| ! | TGGTTTGCCTTCCAACTTGA+GGG | - | chr3_2:18376744-18376763 | Msa0398050:CDS | 45.0% |
| TATTGACAGGTCCCTCAAGT+TGG | + | chr3_2:18376758-18376777 | None:intergenic | 45.0% | |
| TGATTTCTTCGAGAGAGGAG+TGG | - | chr3_2:18376794-18376813 | Msa0398050:CDS | 45.0% | |
| GATTTCTTCGAGAGAGGAGT+GGG | - | chr3_2:18376795-18376814 | Msa0398050:CDS | 45.0% | |
| ATTTCTTCGAGAGAGGAGTG+GGG | - | chr3_2:18376796-18376815 | Msa0398050:CDS | 45.0% | |
| !! | GAGTGATTTTGTTGTGGGAG+AGG | - | chr3_2:18375808-18375827 | Msa0398050:CDS | 45.0% |
| ! | TTTGTTGTGGGAGAGGAGAA+TGG | - | chr3_2:18375815-18375834 | Msa0398050:CDS | 45.0% |
| TTGTTGTGGGAGAGGAGAAT+GGG | - | chr3_2:18375816-18375835 | Msa0398050:CDS | 45.0% | |
| TTCAACTGCACAGCTGTGAT+AGG | - | chr3_2:18376134-18376153 | Msa0398050:intron | 45.0% | |
| TGCACAGCTGTGATAGGATA+AGG | - | chr3_2:18376140-18376159 | Msa0398050:CDS | 45.0% | |
| GAGGAATGGTCATGTCTTGA+AGG | - | chr3_2:18376253-18376272 | Msa0398050:CDS | 45.0% | |
| !!! | CATAGCTTTTTCAAGCTGGC+CGG | + | chr3_2:18376469-18376488 | None:intergenic | 45.0% |
| TAGTGAAAAAGGCAAGGAGG+AGG | + | chr3_2:18376656-18376675 | None:intergenic | 45.0% | |
| GTGTAGTGAAAAAGGCAAGG+AGG | + | chr3_2:18376659-18376678 | None:intergenic | 45.0% | |
| TTGGAAACGATTCCAGCTCT+GGG | + | chr3_2:18376720-18376739 | None:intergenic | 45.0% | |
| ATTGGAAACGATTCCAGCTC+TGG | + | chr3_2:18376721-18376740 | None:intergenic | 45.0% | |
| AGAGCTGGAATCGTTTCCAA+TGG | - | chr3_2:18376720-18376739 | Msa0398050:CDS | 45.0% | |
| GAGCTGGAATCGTTTCCAAT+GGG | - | chr3_2:18376721-18376740 | Msa0398050:CDS | 45.0% | |
| ! | TGGTTTGCCTTCCAACTTGA+GGG | - | chr3_2:18376744-18376763 | Msa0398050:CDS | 45.0% |
| TATTGACAGGTCCCTCAAGT+TGG | + | chr3_2:18376758-18376777 | None:intergenic | 45.0% | |
| TGATTTCTTCGAGAGAGGAG+TGG | - | chr3_2:18376794-18376813 | Msa0398050:CDS | 45.0% | |
| GATTTCTTCGAGAGAGGAGT+GGG | - | chr3_2:18376795-18376814 | Msa0398050:CDS | 45.0% | |
| ATTTCTTCGAGAGAGGAGTG+GGG | - | chr3_2:18376796-18376815 | Msa0398050:CDS | 45.0% | |
| ATTAATCCCGAAGATGCCGC+AGG | - | chr3_2:18375911-18375930 | Msa0398050:CDS | 50.0% | |
| ATTTGCTCCTGCGGCATCTT+CGG | + | chr3_2:18375921-18375940 | None:intergenic | 50.0% | |
| ! | TGATTCGATGTCGGATTGGG+AGG | - | chr3_2:18376234-18376253 | Msa0398050:CDS | 50.0% |
| ! | GGCAGAGCCCTTTTCAACTT+GGG | + | chr3_2:18376316-18376335 | None:intergenic | 50.0% |
| ! | AGGCAGAGCCCTTTTCAACT+TGG | + | chr3_2:18376317-18376336 | None:intergenic | 50.0% |
| CGGTGCACCCATTATCACAA+AGG | + | chr3_2:18376492-18376511 | None:intergenic | 50.0% | |
| CTGGAATCGTTTCCAATGGG+TGG | - | chr3_2:18376724-18376743 | Msa0398050:CDS | 50.0% | |
| TTGGAAGGCAAACCACCCAT+TGG | + | chr3_2:18376739-18376758 | None:intergenic | 50.0% | |
| ! | GTGGTTTGCCTTCCAACTTG+AGG | - | chr3_2:18376743-18376762 | Msa0398050:CDS | 50.0% |
| AAAAGTGGAGTCCTTCCCAG+AGG | - | chr3_2:18376870-18376889 | Msa0398050:CDS | 50.0% | |
| ATTAATCCCGAAGATGCCGC+AGG | - | chr3_2:18375911-18375930 | Msa0398050:CDS | 50.0% | |
| ATTTGCTCCTGCGGCATCTT+CGG | + | chr3_2:18375921-18375940 | None:intergenic | 50.0% | |
| ! | TGATTCGATGTCGGATTGGG+AGG | - | chr3_2:18376234-18376253 | Msa0398050:CDS | 50.0% |
| ! | GGCAGAGCCCTTTTCAACTT+GGG | + | chr3_2:18376316-18376335 | None:intergenic | 50.0% |
| ! | AGGCAGAGCCCTTTTCAACT+TGG | + | chr3_2:18376317-18376336 | None:intergenic | 50.0% |
| CGGTGCACCCATTATCACAA+AGG | + | chr3_2:18376492-18376511 | None:intergenic | 50.0% | |
| CTGGAATCGTTTCCAATGGG+TGG | - | chr3_2:18376724-18376743 | Msa0398050:CDS | 50.0% | |
| TTGGAAGGCAAACCACCCAT+TGG | + | chr3_2:18376739-18376758 | None:intergenic | 50.0% | |
| ! | GTGGTTTGCCTTCCAACTTG+AGG | - | chr3_2:18376743-18376762 | Msa0398050:CDS | 50.0% |
| AAAAGTGGAGTCCTTCCCAG+AGG | - | chr3_2:18376870-18376889 | Msa0398050:CDS | 50.0% | |
| TTTGCTCCTGCGGCATCTTC+GGG | + | chr3_2:18375920-18375939 | None:intergenic | 55.0% | |
| ! | CGATGTCGGATTGGGAGGAA+TGG | - | chr3_2:18376239-18376258 | Msa0398050:CDS | 55.0% |
| ATTGACCGATTGCCCAGAGC+TGG | - | chr3_2:18376705-18376724 | Msa0398050:intron | 55.0% | |
| !! | CGATTCCAGCTCTGGGCAAT+CGG | + | chr3_2:18376713-18376732 | None:intergenic | 55.0% |
| !! | GACAGGTCCCTCAAGTTGGA+AGG | + | chr3_2:18376754-18376773 | None:intergenic | 55.0% |
| ! | CAGCAGATTCTCCTCTGGGA+AGG | + | chr3_2:18376884-18376903 | None:intergenic | 55.0% |
| GTGGCAGCAGATTCTCCTCT+GGG | + | chr3_2:18376888-18376907 | None:intergenic | 55.0% | |
| TTTGCTCCTGCGGCATCTTC+GGG | + | chr3_2:18375920-18375939 | None:intergenic | 55.0% | |
| ! | CGATGTCGGATTGGGAGGAA+TGG | - | chr3_2:18376239-18376258 | Msa0398050:CDS | 55.0% |
| ATTGACCGATTGCCCAGAGC+TGG | - | chr3_2:18376705-18376724 | Msa0398050:intron | 55.0% | |
| !! | CGATTCCAGCTCTGGGCAAT+CGG | + | chr3_2:18376713-18376732 | None:intergenic | 55.0% |
| !! | GACAGGTCCCTCAAGTTGGA+AGG | + | chr3_2:18376754-18376773 | None:intergenic | 55.0% |
| ! | CAGCAGATTCTCCTCTGGGA+AGG | + | chr3_2:18376884-18376903 | None:intergenic | 55.0% |
| GTGGCAGCAGATTCTCCTCT+GGG | + | chr3_2:18376888-18376907 | None:intergenic | 55.0% | |
| TGGGTGCACCGAGTTCTCAG+TGG | - | chr3_2:18376501-18376520 | Msa0398050:CDS | 60.0% | |
| GGTGGCAGCAGATTCTCCTC+TGG | + | chr3_2:18376889-18376908 | None:intergenic | 60.0% | |
| TGGGTGCACCGAGTTCTCAG+TGG | - | chr3_2:18376501-18376520 | Msa0398050:CDS | 60.0% | |
| GGTGGCAGCAGATTCTCCTC+TGG | + | chr3_2:18376889-18376908 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 18375767 | 18376931 | 18375767 | ID=Msa0398050;Name=Msa0398050 |
| chr3_2 | mRNA | 18375767 | 18376931 | 18375767 | ID=Msa0398050-mRNA-1;Parent=Msa0398050;Name=Msa0398050-mRNA-1;_AED=0.43;_eAED=0.48;_QI=0|0|0|1|0|0|5|0|337 |
| chr3_2 | exon | 18376715 | 18376931 | 18376715 | ID=Msa0398050-mRNA-1:exon:4127;Parent=Msa0398050-mRNA-1 |
| chr3_2 | exon | 18376381 | 18376618 | 18376381 | ID=Msa0398050-mRNA-1:exon:4126;Parent=Msa0398050-mRNA-1 |
| chr3_2 | exon | 18376135 | 18376371 | 18376135 | ID=Msa0398050-mRNA-1:exon:4125;Parent=Msa0398050-mRNA-1 |
| chr3_2 | exon | 18375881 | 18376122 | 18375881 | ID=Msa0398050-mRNA-1:exon:4124;Parent=Msa0398050-mRNA-1 |
| chr3_2 | exon | 18375767 | 18375846 | 18375767 | ID=Msa0398050-mRNA-1:exon:4123;Parent=Msa0398050-mRNA-1 |
| chr3_2 | CDS | 18376715 | 18376931 | 18376715 | ID=Msa0398050-mRNA-1:cds;Parent=Msa0398050-mRNA-1 |
| chr3_2 | CDS | 18376381 | 18376618 | 18376381 | ID=Msa0398050-mRNA-1:cds;Parent=Msa0398050-mRNA-1 |
| chr3_2 | CDS | 18376135 | 18376371 | 18376135 | ID=Msa0398050-mRNA-1:cds;Parent=Msa0398050-mRNA-1 |
| chr3_2 | CDS | 18375881 | 18376122 | 18375881 | ID=Msa0398050-mRNA-1:cds;Parent=Msa0398050-mRNA-1 |
| chr3_2 | CDS | 18375767 | 18375846 | 18375767 | ID=Msa0398050-mRNA-1:cds;Parent=Msa0398050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
