AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0443290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 304 sgRNAs with CRISPR-Local

Find 595 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGCTCTCTTTGGCATTC+TGG 0.075241 3_3:+13955543 Msa0443290:CDS
TCATACTTCTCCTTTATTAT+TGG 0.138091 3_3:-13952845 None:intergenic
ACCACTTACCACCAATTTAT+TGG 0.139653 3_3:+13949754 Msa0443290:five_prime_UTR
CATGGAACAATTCTTATTAA+AGG 0.161217 3_3:+13951546 Msa0443290:five_prime_UTR
TGACAACCCCTTAGCCAATT+TGG 0.184197 3_3:-13951777 None:intergenic
ATGTGATAATTGACGGAATT+TGG 0.185449 3_3:+13952912 Msa0443290:five_prime_UTR
TTTCTTGTCCCTTAATGTTT+TGG 0.191323 3_3:+13951962 Msa0443290:five_prime_UTR
CCCTTTAACCATGGATCTTC+TGG 0.201236 3_3:+13950343 Msa0443290:five_prime_UTR
TCTCAAATTCCAAAACATTA+AGG 0.204071 3_3:-13951971 None:intergenic
AGGTGTTCCGATGTGATATT+TGG 0.227350 3_3:-13950897 None:intergenic
GAATTACATTTGATGTTTAA+TGG 0.228010 3_3:+13951636 Msa0443290:five_prime_UTR
CTCTACCCAACTCTCTTTCT+TGG 0.229738 3_3:+13952804 Msa0443290:five_prime_UTR
CTCTGTAAAATGTCCTTCTT+TGG 0.230601 3_3:+13952334 Msa0443290:five_prime_UTR
GCTTCCTCTAAGTCTTTCTT+TGG 0.232439 3_3:+13946656 Msa0443290:five_prime_UTR
ATCATTGGTGAAGAGATTTA+TGG 0.237869 3_3:+13951918 Msa0443290:five_prime_UTR
TTATTTGTTCTCATACTTTC+AGG 0.240043 3_3:+13946859 Msa0443290:five_prime_UTR
ACCAATCCCAACTCTTTCTT+TGG 0.250276 3_3:-13949857 None:intergenic
ATTTATCTTGCAGAGGCTTT+AGG 0.258086 3_3:+13949404 Msa0443290:intron
AAACCGACTATGCTGATTAT+TGG 0.261123 3_3:-13950043 None:intergenic
ATTCCGTCAATTATCACATT+TGG 0.262995 3_3:-13952908 None:intergenic
AACCACATTTCCACATTTCA+TGG 0.263567 3_3:+13953665 Msa0443290:CDS
TGAGCTCTCTTTGGCATTCT+GGG 0.267873 3_3:+13955544 Msa0443290:CDS
ACAGAGATGTGGTAGAATTT+TGG 0.273672 3_3:+13952187 Msa0443290:five_prime_UTR
CCACTTACCACCAATTTATT+GGG 0.277623 3_3:+13949755 Msa0443290:five_prime_UTR
CTTCATCAACTTTCAATAAC+AGG 0.280742 3_3:+13952377 Msa0443290:five_prime_UTR
TTGGACAATTCTCTATATAA+AGG 0.281591 3_3:-13952523 None:intergenic
AAGATATCAATGATGAAGTT+TGG 0.292582 3_3:-13946628 None:intergenic
ATATCCAAATACCTCTGATT+AGG 0.299119 3_3:-13953732 None:intergenic
GTGAACAAGTGTAGTGAAAA+AGG 0.300630 3_3:-13952419 None:intergenic
ATGACGTAAATTGATGAGTT+TGG 0.300845 3_3:-13951373 None:intergenic
AAATTCTCCTGACACTGATT+TGG 0.307201 3_3:-13950950 None:intergenic
GATATGTGGCAATTATTAGA+TGG 0.308577 3_3:+13950646 Msa0443290:five_prime_UTR
TCTCTCGAACCAATCAGTTT+TGG 0.321303 3_3:-13952542 None:intergenic
TCCAGAAGATCCATGGTTAA+AGG 0.324955 3_3:-13950344 None:intergenic
TTGTACCTTCGGAACCAAAA+AGG 0.324962 3_3:-13953009 None:intergenic
TATTGGACTTGAGCTCTCTT+TGG 0.325104 3_3:+13955535 Msa0443290:CDS
TGAAACCAAGCCCAATAAAT+TGG 0.330079 3_3:-13949765 None:intergenic
AAGGTAATAGCTTTCCAAAT+TGG 0.330414 3_3:+13951763 Msa0443290:five_prime_UTR
ACATGAATGGTCTGAGATAT+TGG 0.331821 3_3:+13950618 Msa0443290:five_prime_UTR
AGATATCAATGATGAAGTTT+GGG 0.331936 3_3:-13946627 None:intergenic
TCTCCGGTACGCGAGCTGAA+TGG 0.337929 3_3:-13946599 None:intergenic
CAACTCCAACACATGCTAAT+GGG 0.339648 3_3:+13950250 Msa0443290:five_prime_UTR
ATGGAACAATTCTTATTAAA+GGG 0.341126 3_3:+13951547 Msa0443290:five_prime_UTR
CTCAAATTCCAAAACATTAA+GGG 0.345092 3_3:-13951970 None:intergenic
GAGGAGTGGTTGTGTCTTGA+AGG 0.347121 3_3:+13952008 Msa0443290:five_prime_UTR
TTGAAAGGACGCGTCATATT+CGG 0.348453 3_3:+13951010 Msa0443290:five_prime_UTR
TAATTTGCAAACGCTCTTGC+TGG 0.357478 3_3:+13951311 Msa0443290:five_prime_UTR
TTCCGTCAATTATCACATTT+GGG 0.360187 3_3:-13952907 None:intergenic
ATGGATGAGTCAAGCATATA+TGG 0.362122 3_3:+13949953 Msa0443290:five_prime_UTR
GACAAGATCATGCATGAAAT+AGG 0.363127 3_3:-13950917 None:intergenic
TCTCCCAAAGAAAGACTTAG+AGG 0.365172 3_3:-13946660 None:intergenic
GAATATGACGCGTCCTTTCA+AGG 0.368564 3_3:-13951008 None:intergenic
AAATGACTTAAGAATTGCTT+TGG 0.368951 3_3:-13950185 None:intergenic
CTCTATAATATTATCACTCT+TGG 0.368974 3_3:-13952156 None:intergenic
TCAACTCCAACACATGCTAA+TGG 0.370626 3_3:+13950249 Msa0443290:five_prime_UTR
ACAATTCTTATTAAAGGGTT+GGG 0.377230 3_3:+13951552 Msa0443290:five_prime_UTR
TAAAGATTGTCCAATAATAA+AGG 0.379648 3_3:+13952835 Msa0443290:five_prime_UTR
AGTTACTCCTTCTGCGAAAT+CGG 0.380596 3_3:+13952237 Msa0443290:five_prime_UTR
CTCCGGTACGCGAGCTGAAT+GGG 0.383172 3_3:-13946598 None:intergenic
AAAGAAGATGCCAAAGCATA+TGG 0.384120 3_3:+13951431 Msa0443290:five_prime_UTR
ATAATCAGCATAGTCGGTTT+AGG 0.390635 3_3:+13950046 Msa0443290:five_prime_UTR
TCAAGTGATTATTGAGAAGT+TGG 0.395437 3_3:+13949493 Msa0443290:five_prime_UTR
TTTATTGTGGAAGAGCATAA+TGG 0.395467 3_3:+13951486 Msa0443290:five_prime_UTR
TTAGTATCTCTTAAACTAAA+GGG 0.395800 3_3:+13951810 Msa0443290:five_prime_UTR
AATTTGAGAAGATGAACAAT+TGG 0.397443 3_3:+13951985 Msa0443290:five_prime_UTR
CTTAGTATCTCTTAAACTAA+AGG 0.397498 3_3:+13951809 Msa0443290:five_prime_UTR
TACCACCAATTTATTGGGCT+TGG 0.397642 3_3:+13949760 Msa0443290:five_prime_UTR
TGAGGTTGTTATCATTTAGA+TGG 0.398853 3_3:+13951178 Msa0443290:five_prime_UTR
TATCCAAATACCTCTGATTA+GGG 0.402257 3_3:-13953731 None:intergenic
TTTCAAGACTAAAATGTTTG+AGG 0.402650 3_3:+13951160 Msa0443290:five_prime_UTR
CTCGGACGGTACATGATGTT+TGG 0.403477 3_3:-13946574 None:intergenic
GCTTCAACAAGATTTGCTTC+AGG 0.404912 3_3:+13953687 Msa0443290:CDS
CTTCCTCTAAGTCTTTCTTT+GGG 0.405497 3_3:+13946657 Msa0443290:five_prime_UTR
TGTTCTTTGTTGCCACCACT+TGG 0.406339 3_3:+13951843 Msa0443290:five_prime_UTR
CAGGCAATGACAGTGGCAAC+CGG 0.406536 3_3:+13950017 Msa0443290:five_prime_UTR
AGTCTGAAATAGAAAGCTTC+TGG 0.409446 3_3:-13951881 None:intergenic
GCAAAACTAAACCATCTTCA+TGG 0.412227 3_3:+13951528 Msa0443290:five_prime_UTR
TAAGAATTGTTCCATGAAGA+TGG 0.413631 3_3:-13951539 None:intergenic
CTGCCAATTGCTTCAAGGGT+TGG 0.414352 3_3:-13950517 None:intergenic
AAGATGGATTGATCAGGCTT+TGG 0.418881 3_3:+13950779 Msa0443290:five_prime_UTR
AACAATTCTTATTAAAGGGT+TGG 0.420241 3_3:+13951551 Msa0443290:five_prime_UTR
AGTTCTTCACATATATGCTT+TGG 0.423281 3_3:-13949634 None:intergenic
CAGATGAAGAGATTGAAGTT+TGG 0.424461 3_3:-13952441 None:intergenic
TAAACTGTCCCAATTTGAAA+AGG 0.425022 3_3:+13952060 Msa0443290:five_prime_UTR
CTTTCTTGAAGCGTTGGAGT+TGG 0.425023 3_3:+13952301 Msa0443290:five_prime_UTR
GATTTCTTCTCTTGATAGCC+AGG 0.426074 3_3:-13955470 None:intergenic
TATTTATAATTGCAACAAGT+TGG 0.426536 3_3:+13952121 Msa0443290:five_prime_UTR
TCTTAAGTCATTTAATTCTT+CGG 0.426600 3_3:+13950195 Msa0443290:five_prime_UTR
TACAACATACAAATGCTATC+AGG 0.426716 3_3:-13951288 None:intergenic
AAAGCATATATGTGAAGAAC+TGG 0.427933 3_3:+13949636 Msa0443290:five_prime_UTR
TGAAGTTTGGGGCGCGTCTC+CGG 0.428764 3_3:-13946615 None:intergenic
TCAACATATCATGGCAGAAT+TGG 0.429569 3_3:+13949442 Msa0443290:five_prime_UTR
TTGGGTAGAGCCTCCTTCTC+TGG 0.430624 3_3:-13952791 None:intergenic
TTTCCTGCCAATTGCTTCAA+GGG 0.431391 3_3:-13950521 None:intergenic
CCAGAAGATCCATGGTTAAA+GGG 0.431897 3_3:-13950343 None:intergenic
AGGGAAAATTGATTAAACTT+TGG 0.433008 3_3:-13952280 None:intergenic
TCACTTCACAGATCTCAGTT+TGG 0.433203 3_3:+13946808 Msa0443290:intron
GAGAATTGTCCAAAACTGAT+TGG 0.433763 3_3:+13952533 Msa0443290:five_prime_UTR
ATAAAGGAGAAGTATGAAAA+GGG 0.434067 3_3:+13952851 Msa0443290:five_prime_UTR
TGCTAGCAAAACCAAGTTAC+GGG 0.436519 3_3:+13952969 Msa0443290:five_prime_UTR
AATAAAGGAGAAGTATGAAA+AGG 0.437791 3_3:+13952850 Msa0443290:five_prime_UTR
CAAACGTGGGACCCGTAACT+TGG 0.438593 3_3:-13952980 None:intergenic
TGCTAGCACTAATGTGGTGG+TGG 0.439532 3_3:-13952954 None:intergenic
TTACTTCTTCCCTTTAACCA+TGG 0.439643 3_3:+13950334 Msa0443290:five_prime_UTR
AGGAGTGGTTGTGTCTTGAA+GGG 0.443096 3_3:+13952009 Msa0443290:five_prime_UTR
ATCATGGCAGAATTGGTAGC+TGG 0.444064 3_3:+13949449 Msa0443290:five_prime_UTR
TAATGGTACAAGAAAAGAAA+TGG 0.445820 3_3:+13951653 Msa0443290:five_prime_UTR
CAAGTTACGGGTCCCACGTT+TGG 0.446048 3_3:+13952981 Msa0443290:five_prime_UTR
ATCAAGTTATGAAGGAAGCC+TGG 0.446209 3_3:+13955046 Msa0443290:CDS
TATCCAACCCTTGAAGCAAT+TGG 0.448041 3_3:+13950514 Msa0443290:five_prime_UTR
TTGAAGCGTTGGAGTTGGAT+TGG 0.451405 3_3:+13952306 Msa0443290:five_prime_UTR
CAACTCCAACGCTTCAAGAA+AGG 0.454273 3_3:-13952300 None:intergenic
ATGCAATGTGTCTGTCTTGG+AGG 0.454724 3_3:+13951692 Msa0443290:five_prime_UTR
GACAAAAGAGAAGAAGAGTT+AGG 0.455156 3_3:+13950835 Msa0443290:five_prime_UTR
ATCCCAAATGTGATAATTGA+CGG 0.458010 3_3:+13952905 Msa0443290:five_prime_UTR
ATTTGAGAAGATGAACAATT+GGG 0.458403 3_3:+13951986 Msa0443290:five_prime_UTR
GCAAAGCCAAAGAAAGAGTT+GGG 0.460054 3_3:+13949851 Msa0443290:five_prime_UTR
AAGCATATCACTTGTAAACT+TGG 0.463554 3_3:-13954794 None:intergenic
ATAGAAAGCTTCTGGAGAAA+GGG 0.465149 3_3:-13951873 None:intergenic
AATTGAAAACAAGCCATTGT+TGG 0.465390 3_3:+13950446 Msa0443290:five_prime_UTR
AGTTTAAGAGATACTAAGTT+GGG 0.466390 3_3:-13951804 None:intergenic
TCTCTTAAACTAAAGGGTTG+TGG 0.466821 3_3:+13951816 Msa0443290:five_prime_UTR
GATTATTGAGAAGTTGGCTT+CGG 0.469107 3_3:+13949499 Msa0443290:five_prime_UTR
TGAAGAGGAAGAAGATGTGC+TGG 0.469393 3_3:-13953192 None:intergenic
CCCAATAAATTGGTGGTAAG+TGG 0.469544 3_3:-13949755 None:intergenic
ATTGGAAATGATTCCAGCTC+TGG 0.472086 3_3:-13952473 None:intergenic
AATAGAAAGCTTCTGGAGAA+AGG 0.472967 3_3:-13951874 None:intergenic
AACTCCAACGCTTCAAGAAA+GGG 0.473272 3_3:-13952299 None:intergenic
CATGATGTTTGGAGAATCAA+TGG 0.473663 3_3:-13946563 None:intergenic
GAATGGGGATGCAGAATGTT+GGG 0.473861 3_3:+13950306 Msa0443290:five_prime_UTR
TATATAAAGGAAACTCAAGT+TGG 0.474257 3_3:-13952510 None:intergenic
GGTGGCAACAGATTCTCCTC+TGG 0.474682 3_3:-13952644 None:intergenic
TCCTTGAAACATTTCACTGT+TGG 0.475290 3_3:+13952590 Msa0443290:five_prime_UTR
TCTTCCCCATTAGCATGTGT+TGG 0.478635 3_3:-13950255 None:intergenic
ACCAACAGTGAAATGTTTCA+AGG 0.478638 3_3:-13952591 None:intergenic
TCTATAATATTATCACTCTT+GGG 0.479625 3_3:-13952155 None:intergenic
ATAGATAACTGAGAGATTTG+AGG 0.479683 3_3:-13952736 None:intergenic
CTTCCACAATAAAATATGAC+AGG 0.480397 3_3:-13951476 None:intergenic
CAATTCTATCAACTTAGTAC+TGG 0.482245 3_3:+13949589 Msa0443290:five_prime_UTR
TATCGTGACAACACGTGAAA+AGG 0.482633 3_3:+13950375 Msa0443290:five_prime_UTR
AATGTTTCAAGGAATTGAGT+TGG 0.483403 3_3:-13952580 None:intergenic
ATTGTCATCTACAGCTCTCA+TGG 0.486247 3_3:+13949934 Msa0443290:five_prime_UTR
TGGTAACTCAATCTCAGCAC+TGG 0.490305 3_3:-13950685 None:intergenic
AAAGAGTTGGGATTGGTAGA+AGG 0.494312 3_3:+13949863 Msa0443290:five_prime_UTR
TGTCATGGAATAAAGATCAT+TGG 0.495365 3_3:+13951903 Msa0443290:five_prime_UTR
TCTGGCAAGCTCTCAAGACT+AGG 0.495610 3_3:-13952773 None:intergenic
AGCAGAGTCTATCAGTTGGC+AGG 0.495858 3_3:+13955495 Msa0443290:CDS
TTGGCTGTCGCAGCATCTGC+AGG 0.497176 3_3:-13951588 None:intergenic
AGCTTTATATCAAGTTATGA+AGG 0.498391 3_3:+13955038 Msa0443290:CDS
TCATTAAGTCTAGATTCAAA+TGG 0.499206 3_3:-13949803 None:intergenic
TCATTTAATTCTTCGGCAGA+TGG 0.499541 3_3:+13950202 Msa0443290:five_prime_UTR
CTAGTGCCTCTATAATCACT+TGG 0.499629 3_3:-13951405 None:intergenic
GTGTGGTCTCTCAGAGCTAG+TGG 0.500904 3_3:+13951200 Msa0443290:five_prime_UTR
TTGTTATCATTTAGATGGTG+TGG 0.502446 3_3:+13951183 Msa0443290:five_prime_UTR
TACGCGAGCTGAATGGGTCT+CGG 0.502819 3_3:-13946592 None:intergenic
ATAGCTTTCCAAATTGGCTA+AGG 0.503160 3_3:+13951769 Msa0443290:five_prime_UTR
ATATGTGGCAATTATTAGAT+GGG 0.503438 3_3:+13950647 Msa0443290:five_prime_UTR
AAACTGTCCCAATTTGAAAA+GGG 0.505405 3_3:+13952061 Msa0443290:five_prime_UTR
CTTTCTATTTCAGACTGTCA+TGG 0.505538 3_3:+13951888 Msa0443290:five_prime_UTR
GCATGTGTTGGAGTTGATGT+TGG 0.506354 3_3:-13950243 None:intergenic
TTGATATAAAGCTATCTCAA+TGG 0.506570 3_3:-13955028 None:intergenic
GATTTATCCAAATCAGTGTC+AGG 0.506636 3_3:+13950943 Msa0443290:five_prime_UTR
GACAACCAAGAAAGAGAGTT+GGG 0.507219 3_3:-13952809 None:intergenic
TAGCTTTCCAAATTGGCTAA+GGG 0.508759 3_3:+13951770 Msa0443290:five_prime_UTR
GGCAAAACAACGCTTCCGAT+TGG 0.510103 3_3:-13950719 None:intergenic
TCATGGCAGAATTGGTAGCT+GGG 0.511179 3_3:+13949450 Msa0443290:five_prime_UTR
AATCAAATAGCAACTTGAAG+AGG 0.513090 3_3:+13951721 Msa0443290:five_prime_UTR
ATTACCTTTGTATTGTGAGA+TGG 0.513262 3_3:-13951748 None:intergenic
TGCAAAGCCAAAGAAAGAGT+TGG 0.514261 3_3:+13949850 Msa0443290:five_prime_UTR
ATATGGTAATTTACTTGAAG+AGG 0.514690 3_3:-13953207 None:intergenic
GGTCCTTGTGCTAGTAATGA+AGG 0.515802 3_3:+13949884 Msa0443290:five_prime_UTR
GATTGGTTCGAGAGAGGAGT+GGG 0.515875 3_3:+13952550 Msa0443290:five_prime_UTR
GGAATGGGGATGCAGAATGT+TGG 0.515986 3_3:+13950305 Msa0443290:five_prime_UTR
AGCAATTGGCAGGAAAATAG+TGG 0.516613 3_3:+13950528 Msa0443290:five_prime_UTR
AGTCCCTTCAGCTCACATAT+TGG 0.517208 3_3:-13951072 None:intergenic
CGGTGTACCGATTTCGCAGA+AGG 0.517907 3_3:-13952244 None:intergenic
ATCAACTTTCAATAACAGGA+TGG 0.519819 3_3:+13952381 Msa0443290:five_prime_UTR
GTAATGAAGGCTTAGTCAGT+TGG 0.520058 3_3:+13949897 Msa0443290:five_prime_UTR
TCAACTTTCAATAACAGGAT+GGG 0.520279 3_3:+13952382 Msa0443290:five_prime_UTR
ACCACAATCTCCCTTCCAAT+CGG 0.521663 3_3:+13950704 Msa0443290:five_prime_UTR
TGGATCTGATCTTAAAGAGT+TGG 0.523665 3_3:+13951506 Msa0443290:five_prime_UTR
GTGCTAGCAAAACCAAGTTA+CGG 0.524285 3_3:+13952968 Msa0443290:five_prime_UTR
GCAAATAAAGGGTGCTATGG+TGG 0.526205 3_3:+13950978 Msa0443290:five_prime_UTR
AAACAACGCTTCCGATTGGA+AGG 0.529681 3_3:-13950715 None:intergenic
CTGGAATCATTTCCAATGGG+TGG 0.529871 3_3:+13952479 Msa0443290:five_prime_UTR
AAGAAGATGCCAAAGCATAT+GGG 0.531018 3_3:+13951432 Msa0443290:five_prime_UTR
TCTTGAGAGCTTGCCAGAGA+AGG 0.532517 3_3:+13952778 Msa0443290:five_prime_UTR
TCTGTACGATTGTCCAGAGC+TGG 0.533283 3_3:+13952460 Msa0443290:five_prime_UTR
AGTGGTTGATGAAGCTCAGA+TGG 0.533575 3_3:-13955577 None:intergenic
AGATGATCTTGCACATTGAA+AGG 0.534484 3_3:+13955070 Msa0443290:CDS
TGCTCACTGCTTTATACCAA+TGG 0.534810 3_3:+13955111 Msa0443290:CDS
TAAGCAAATAAAGGGTGCTA+TGG 0.535560 3_3:+13950975 Msa0443290:five_prime_UTR
GCTCTCAAGACTAGGGCAGT+TGG 0.536297 3_3:-13952765 None:intergenic
GTGGCAACAGATTCTCCTCT+GGG 0.537140 3_3:-13952643 None:intergenic
GCGTCAAGCTCAACATATCA+TGG 0.538135 3_3:+13949433 Msa0443290:five_prime_UTR
ATTGATTAAACTTTGGTCCA+CGG 0.538490 3_3:-13952273 None:intergenic
GACCCATTCAGCTCGCGTAC+CGG 0.538600 3_3:+13946596 Msa0443290:five_prime_UTR
TTCTAATCTCAGTGTATGAA+AGG 0.540446 3_3:-13951260 None:intergenic
GCCAAAGAAAGAGTTGGGAT+TGG 0.541152 3_3:+13949856 Msa0443290:five_prime_UTR
CATAGTCGGTTTAGGAGGGA+TGG 0.542876 3_3:+13950054 Msa0443290:five_prime_UTR
ATCAGGCTTTGGATGGCAGA+AGG 0.544695 3_3:+13950790 Msa0443290:five_prime_UTR
AGATGAACAATTGGGAGGAG+TGG 0.545139 3_3:+13951994 Msa0443290:five_prime_UTR
TTATAATTGCAACAAGTTGG+AGG 0.545144 3_3:+13952124 Msa0443290:five_prime_UTR
TGGATTGATCAGGCTTTGGA+TGG 0.545417 3_3:+13950783 Msa0443290:five_prime_UTR
ATATGGTAGAGATGATGATA+AGG 0.546803 3_3:+13949970 Msa0443290:five_prime_UTR
GCTAGCACTAATGTGGTGGT+GGG 0.547294 3_3:-13952953 None:intergenic
AAAGGAAGAAACTCAAGAGT+TGG 0.548529 3_3:-13952665 None:intergenic
ATATAAAGCTCTTTAAGCAA+AGG 0.548555 3_3:-13952035 None:intergenic
TGAGAGCTTGCCAGAGAAGG+AGG 0.549002 3_3:+13952781 Msa0443290:five_prime_UTR
AATGTGCAAGATCATCTCCC+AGG 0.549104 3_3:-13955064 None:intergenic
TAGTTTAAGAGATACTAAGT+TGG 0.549634 3_3:-13951805 None:intergenic
CGACAACCAAGAAAGAGAGT+TGG 0.550373 3_3:-13952810 None:intergenic
CAATATTAAGTTCTTTCACA+AGG 0.550980 3_3:-13949562 None:intergenic
ACTTTGGTCCACGGAGAACT+CGG 0.551299 3_3:-13952264 None:intergenic
TTGGAAGGCAAACCACCCAT+TGG 0.551700 3_3:-13952491 None:intergenic
TAGCAACGTAAATCCAAAGA+AGG 0.555748 3_3:-13952347 None:intergenic
AAAGGAGAAGTATGAAAAGG+GGG 0.556164 3_3:+13952853 Msa0443290:five_prime_UTR
TGAATGCAATGTGTCTGTCT+TGG 0.556172 3_3:+13951689 Msa0443290:five_prime_UTR
ATAGTCGGTTTAGGAGGGAT+GGG 0.556586 3_3:+13950055 Msa0443290:five_prime_UTR
TGCAAAGAAGGAACATGTTG+AGG 0.556860 3_3:-13952089 None:intergenic
CGTTGTACACAAGCTTAGCA+AGG 0.558691 3_3:-13950087 None:intergenic
GAAGGTTTGTTGAAGTGTTG+CGG 0.558939 3_3:+13950808 Msa0443290:five_prime_UTR
CAACCCTTGAAGCAATTGGC+AGG 0.559355 3_3:+13950518 Msa0443290:five_prime_UTR
AGAGCTGGAATCATTTCCAA+TGG 0.559792 3_3:+13952475 Msa0443290:five_prime_UTR
TGGTGGAAGGTAGCCTTGAA+AGG 0.560135 3_3:+13950995 Msa0443290:five_prime_UTR
ATCAGCATAGTCGGTTTAGG+AGG 0.561291 3_3:+13950049 Msa0443290:five_prime_UTR
GTTCTTTGTTGCCACCACTT+GGG 0.565885 3_3:+13951844 Msa0443290:five_prime_UTR
TAGAAATCTCATCTAACAGT+TGG 0.565894 3_3:-13949694 None:intergenic
TCTTACTTCCAGAAGATCCA+TGG 0.565912 3_3:-13950351 None:intergenic
AAATAGTGGACAAGTGTGGA+GGG 0.566716 3_3:+13950542 Msa0443290:five_prime_UTR
GAGCTGGAATCATTTCCAAT+GGG 0.567353 3_3:+13952476 Msa0443290:five_prime_UTR
AACCAAGCCCAATAAATTGG+TGG 0.567507 3_3:-13949762 None:intergenic
AGAGCCAATATGTGAGCTGA+AGG 0.568736 3_3:+13951068 Msa0443290:five_prime_UTR
CTTCTCAATAATCACTTGAA+AGG 0.569756 3_3:-13949489 None:intergenic
TCACAAATAAACTCCAACAA+TGG 0.570035 3_3:-13950459 None:intergenic
AAAACATTAAGGGACAAGAA+AGG 0.572567 3_3:-13951960 None:intergenic
TCAAGTTATGAAGGAAGCCT+GGG 0.573183 3_3:+13955047 Msa0443290:CDS
CAACTTTCAATAACAGGATG+GGG 0.573299 3_3:+13952383 Msa0443290:five_prime_UTR
GAACTCCCAAGTGATTATAG+AGG 0.573559 3_3:+13951399 Msa0443290:five_prime_UTR
CTATGCTGATTATTGGAACC+CGG 0.573752 3_3:-13950036 None:intergenic
ACTGTTAGATGAGATTTCTA+CGG 0.575655 3_3:+13949697 Msa0443290:five_prime_UTR
TCCGATTGGAAGGGAGATTG+TGG 0.575810 3_3:-13950705 None:intergenic
TTGCAAACGCTCTTGCTGGA+AGG 0.580793 3_3:+13951315 Msa0443290:five_prime_UTR
GATAACTGAGAGATTTGAGG+TGG 0.584319 3_3:-13952733 None:intergenic
AGGCAATGACAGTGGCAACC+GGG 0.584497 3_3:+13950018 Msa0443290:five_prime_UTR
TAAAGGAAACTCAAGTTGGA+AGG 0.586823 3_3:-13952506 None:intergenic
CTGGCAAGCTCTCAAGACTA+GGG 0.588773 3_3:-13952772 None:intergenic
AAGGGGAGCGTCCCAAGTGG+TGG 0.589924 3_3:-13951855 None:intergenic
AGCTTTCCAAATTGGCTAAG+GGG 0.590416 3_3:+13951771 Msa0443290:five_prime_UTR
GGAAGAAACTCAAGAGTTGG+TGG 0.594230 3_3:-13952662 None:intergenic
GAGTTAGATATACAGAGATG+TGG 0.601402 3_3:+13952176 Msa0443290:five_prime_UTR
GTACAACGACAACAAGATAG+AGG 0.601925 3_3:+13950102 Msa0443290:five_prime_UTR
TAGAAAGCTTCTGGAGAAAG+GGG 0.602019 3_3:-13951872 None:intergenic
CTTGTTGAAGCCATGAAATG+TGG 0.602894 3_3:-13953675 None:intergenic
GGTACAAGAAAAGAAATGGA+TGG 0.603213 3_3:+13951657 Msa0443290:five_prime_UTR
CAACAGATTCTCCTCTGGGA+AGG 0.605006 3_3:-13952639 None:intergenic
GTTCCAATAATCAGCATAGT+CGG 0.606616 3_3:+13950040 Msa0443290:five_prime_UTR
AAAATAGTGGACAAGTGTGG+AGG 0.608101 3_3:+13950541 Msa0443290:five_prime_UTR
CAACTTAGTACTGGATGAAG+CGG 0.608941 3_3:+13949598 Msa0443290:five_prime_UTR
TGAGAAGATGAACAATTGGG+AGG 0.609605 3_3:+13951989 Msa0443290:five_prime_UTR
GTACACAAGCTTAGCAAGGG+TGG 0.610362 3_3:-13950083 None:intergenic
ATAAAGGGTGCTATGGTGGA+AGG 0.610533 3_3:+13950982 Msa0443290:five_prime_UTR
AAGGAGAAGTATGAAAAGGG+GGG 0.611476 3_3:+13952854 Msa0443290:five_prime_UTR
TGATTATGAGTTTGAAAACG+TGG 0.615115 3_3:+13952613 Msa0443290:five_prime_UTR
CATGGCAGAATTGGTAGCTG+GGG 0.616301 3_3:+13949451 Msa0443290:five_prime_UTR
GTTGATATCAGAGACTACTT+CGG 0.616437 3_3:+13949521 Msa0443290:five_prime_UTR
TTTAGATGATATCTGGAATG+GGG 0.618263 3_3:+13950291 Msa0443290:five_prime_UTR
TAAAGGAGAAGTATGAAAAG+GGG 0.618397 3_3:+13952852 Msa0443290:five_prime_UTR
AACTCCAACACATGCTAATG+GGG 0.619698 3_3:+13950251 Msa0443290:five_prime_UTR
TAGTGCCTCTATAATCACTT+GGG 0.620309 3_3:-13951404 None:intergenic
GTGGTTGATGAAGCTCAGAT+GGG 0.621193 3_3:-13955576 None:intergenic
AAAACTGATTGGTTCGAGAG+AGG 0.627248 3_3:+13952544 Msa0443290:five_prime_UTR
AGAAAGTCTTCCCTAATCAG+AGG 0.628173 3_3:+13953721 Msa0443290:CDS
AGCTTTGAACAATTAAACAA+AGG 0.629026 3_3:-13952683 None:intergenic
TAGTCGGTTTAGGAGGGATG+GGG 0.630822 3_3:+13950056 Msa0443290:five_prime_UTR
CGTGACAACACGTGAAAAGG+AGG 0.634159 3_3:+13950378 Msa0443290:five_prime_UTR
TCAGCATAGTCGGTTTAGGA+GGG 0.636297 3_3:+13950050 Msa0443290:five_prime_UTR
TCTGAGCAGAGTCTATCAGT+TGG 0.639259 3_3:+13955491 Msa0443290:CDS
TCCCAGGCTAAATTGGAGCG+TGG 0.644484 3_3:+13953114 Msa0443290:intron
AAATTACTTGAAAGTGTGTG+TGG 0.647150 3_3:-13946706 None:intergenic
GAGCCAATATGTGAGCTGAA+GGG 0.648020 3_3:+13951069 Msa0443290:five_prime_UTR
TTGCTGTAAATCAAATAACT+CGG 0.648238 3_3:-13950425 None:intergenic
GGTAACTCAATCTCAGCACT+GGG 0.650908 3_3:-13950684 None:intergenic
TTACTTGCAGGCAATGACAG+TGG 0.655657 3_3:+13950010 Msa0443290:five_prime_UTR
GATATCAATGATGAAGTTTG+GGG 0.658025 3_3:-13946626 None:intergenic
GTTGTACACAAGCTTAGCAA+GGG 0.659528 3_3:-13950086 None:intergenic
CTTACCATCTCACAATACAA+AGG 0.659744 3_3:+13951744 Msa0443290:five_prime_UTR
GCTAAGAATAATGAACAACA+AGG 0.660424 3_3:+13952703 Msa0443290:five_prime_UTR
TCGGTACACCGAGTTCTCCG+TGG 0.660573 3_3:+13952256 Msa0443290:five_prime_UTR
CTGTAAATCAAATAACTCGG+TGG 0.661907 3_3:-13950422 None:intergenic
AGGAAAATAGTGGACAAGTG+TGG 0.664504 3_3:+13950538 Msa0443290:five_prime_UTR
CGAGCTGAATGGGTCTCGGA+CGG 0.666798 3_3:-13946588 None:intergenic
AAGCCTTCATTACTAGCACA+AGG 0.667283 3_3:-13949887 None:intergenic
TTCCACAATAAAATATGACA+GGG 0.667719 3_3:-13951475 None:intergenic
TGATTGGTTCGAGAGAGGAG+TGG 0.670977 3_3:+13952549 Msa0443290:five_prime_UTR
GCGTTGGAGTTGGATTGGAG+TGG 0.671725 3_3:+13952311 Msa0443290:five_prime_UTR
AGCCATGAAATGTGGAAATG+TGG 0.672361 3_3:-13953667 None:intergenic
TATGTGGCAATTATTAGATG+GGG 0.679503 3_3:+13950648 Msa0443290:five_prime_UTR
AGATATTGGAGACTGATATG+TGG 0.681586 3_3:+13950632 Msa0443290:five_prime_UTR
AACAACGCTTCCGATTGGAA+GGG 0.687413 3_3:-13950714 None:intergenic
CTAAGAATAATGAACAACAA+GGG 0.693507 3_3:+13952704 Msa0443290:five_prime_UTR
ATTGGTTCGAGAGAGGAGTG+GGG 0.698443 3_3:+13952551 Msa0443290:five_prime_UTR
AGAAAGGGGAGCGTCCCAAG+TGG 0.719460 3_3:-13951858 None:intergenic
AAACGTGGAGTCCTTCCCAG+AGG 0.770799 3_3:+13952628 Msa0443290:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATATATATGTTGAA+AGG - chr3_3:13946734-13946753 None:intergenic 10.0%
!! ATAATTTAAATAATAAGTGT+CGG + chr3_3:13947086-13947105 Msa0443290:intron 10.0%
!!! AAATGATTTTTTTTTTTTGA+AGG - chr3_3:13947178-13947197 None:intergenic 10.0%
!!! AATTTTTTTTGAATAAAGAT+TGG - chr3_3:13947428-13947447 None:intergenic 10.0%
!!! ATATGAAATTTATATTTTGT+CGG - chr3_3:13948017-13948036 None:intergenic 10.0%
!!! TTCATTTTTTTTAGAATAAA+GGG + chr3_3:13949204-13949223 Msa0443290:intron 10.0%
!!! TATTTTTCGTTTTTAAAAAA+AGG - chr3_3:13949249-13949268 None:intergenic 10.0%
!! TTCTGTAAAAAAAAAAAAAA+TGG - chr3_3:13953584-13953603 None:intergenic 10.0%
!! TTTAAACTTTAATACAAAAA+TGG + chr3_3:13953622-13953641 Msa0443290:intron 10.0%
!! TATTATGTTATGTATTTAAA+CGG + chr3_3:13954022-13954041 Msa0443290:intron 10.0%
!! AAGATAAAAAAAATAAAAGT+CGG - chr3_3:13954121-13954140 None:intergenic 10.0%
!!! TTTTAGTAAAAAAAAAGTGT+TGG + chr3_3:13947116-13947135 Msa0443290:intron 15.0%
!!! TTTTTTTTTTGAAGGAAAAA+AGG - chr3_3:13947170-13947189 None:intergenic 15.0%
!! AATAATAAAAACAGATAGTT+AGG - chr3_3:13947282-13947301 None:intergenic 15.0%
!!! AAATGTAATAGACTTTTAAA+AGG - chr3_3:13947551-13947570 None:intergenic 15.0%
!!! GTCTTCTATTTTAAAATTTA+AGG + chr3_3:13947589-13947608 Msa0443290:intron 15.0%
!!! ATGACAATACTTTTTTAAAA+AGG + chr3_3:13947663-13947682 Msa0443290:intron 15.0%
!!! TTTTTTTTTTTGGCTTTTTT+TGG + chr3_3:13948098-13948117 Msa0443290:intron 15.0%
!!! CTTTATTTTTGTACTATAAA+AGG - chr3_3:13948459-13948478 None:intergenic 15.0%
!!! AAATTTCTTTTTTTGAGAAT+AGG - chr3_3:13949147-13949166 None:intergenic 15.0%
!!! TTCTAAAAAAAATGAAGTTT+TGG - chr3_3:13949200-13949219 None:intergenic 15.0%
!!! CTTCATTTTTTTTAGAATAA+AGG + chr3_3:13949203-13949222 Msa0443290:intron 15.0%
!! GTTAAAAGAAAAATAGAATA+TGG - chr3_3:13953227-13953246 None:intergenic 15.0%
!!! TATTCTATTTTTCTTTTAAC+TGG + chr3_3:13953227-13953246 Msa0443290:intron 15.0%
!!! AAAAATCACAATTTTGAATA+TGG - chr3_3:13953363-13953382 None:intergenic 15.0%
!!! AAAAATTTGTTAGTATTTTC+TGG - chr3_3:13954743-13954762 None:intergenic 15.0%
!!! CTAACAAATTTTTTTTTTAC+AGG + chr3_3:13954750-13954769 Msa0443290:intron 15.0%
!!! CTGCAAATGATTTTTAATTA+AGG - chr3_3:13947232-13947251 None:intergenic 20.0%
!!! ACTAAGTAACTATTTTAGAT+TGG - chr3_3:13947456-13947475 None:intergenic 20.0%
!!! TAATAGACTTTTAAAAGGTT+AGG - chr3_3:13947546-13947565 None:intergenic 20.0%
!!! ATTGTCATTTTTTATTCTCT+TGG - chr3_3:13947651-13947670 None:intergenic 20.0%
!!! TTTTATGTTGTTATAGAGAT+GGG + chr3_3:13947808-13947827 Msa0443290:intron 20.0%
!! TAACTAAATATTCATTGTTG+AGG + chr3_3:13947927-13947946 Msa0443290:intron 20.0%
!!! AGCGAAAATGATTTTATTAT+TGG - chr3_3:13948067-13948086 None:intergenic 20.0%
!! TACAAAAATAAAGATCTATC+TGG + chr3_3:13948466-13948485 Msa0443290:intron 20.0%
!!! TTCCAATCTCTATTTTTTTT+TGG + chr3_3:13949100-13949119 Msa0443290:intron 20.0%
!! TCTTAAGTCATTTAATTCTT+CGG + chr3_3:13950195-13950214 Msa0443290:five_prime_UTR 20.0%
!!! TTTTTAAATTCATAACCCTT+GGG - chr3_3:13950760-13950779 None:intergenic 20.0%
!!! TTTTTTAAATTCATAACCCT+TGG - chr3_3:13950761-13950780 None:intergenic 20.0%
!! GGTTATGAATTTAAAAAAGA+TGG + chr3_3:13950763-13950782 Msa0443290:five_prime_UTR 20.0%
!!! AGAATTTTGTAAGCAAATAA+AGG + chr3_3:13950966-13950985 Msa0443290:five_prime_UTR 20.0%
!!! GAATTTTGTAAGCAAATAAA+GGG + chr3_3:13950967-13950986 Msa0443290:five_prime_UTR 20.0%
!! ATGGAACAATTCTTATTAAA+GGG + chr3_3:13951547-13951566 Msa0443290:five_prime_UTR 20.0%
!!! ATGCTTCTTATCTTTTAAAT+TGG - chr3_3:13951610-13951629 None:intergenic 20.0%
!! GAATTACATTTGATGTTTAA+TGG + chr3_3:13951636-13951655 Msa0443290:five_prime_UTR 20.0%
!! TTAGTATCTCTTAAACTAAA+GGG + chr3_3:13951810-13951829 Msa0443290:five_prime_UTR 20.0%
!! TATTTATAATTGCAACAAGT+TGG + chr3_3:13952121-13952140 Msa0443290:five_prime_UTR 20.0%
!! TCTATAATATTATCACTCTT+GGG - chr3_3:13952158-13952177 None:intergenic 20.0%
!! TAAAGATTGTCCAATAATAA+AGG + chr3_3:13952835-13952854 Msa0443290:five_prime_UTR 20.0%
!! ATGGTAATTTACTAATTGTT+TGG - chr3_3:13953344-13953363 None:intergenic 20.0%
!! GAAATTAGAGAATCTATATT+AGG - chr3_3:13953494-13953513 None:intergenic 20.0%
!!! TACTAATTGTTAGTATTTTC+TGG - chr3_3:13953527-13953546 None:intergenic 20.0%
!!! TGAAAACAATAATGTTTTTG+AGG + chr3_3:13954634-13954653 Msa0443290:intron 20.0%
!!! AAATTTATTGAAAGAGCATT+TGG + chr3_3:13954838-13954857 Msa0443290:intron 20.0%
! AGATATCAATGATGAAGTTT+GGG - chr3_3:13946630-13946649 None:intergenic 25.0%
! AAGATATCAATGATGAAGTT+TGG - chr3_3:13946631-13946650 None:intergenic 25.0%
!!! TCAGTTTGGTGTTTTTTTTT+TGG + chr3_3:13946822-13946841 Msa0443290:five_prime_UTR 25.0%
! TTATTTGTTCTCATACTTTC+AGG + chr3_3:13946859-13946878 Msa0443290:five_prime_UTR 25.0%
! AAATTGAAAGTAACACAGTT+TGG - chr3_3:13946901-13946920 None:intergenic 25.0%
!!! ATGAGTTTTTTTGGACAAAA+AGG - chr3_3:13947204-13947223 None:intergenic 25.0%
! AATAAAAACAGATAGTTAGG+TGG - chr3_3:13947279-13947298 None:intergenic 25.0%
! TTATGATATGATGTAGATAG+TGG + chr3_3:13947497-13947516 Msa0443290:intron 25.0%
!! CTTTTATGTTGTTATAGAGA+TGG + chr3_3:13947807-13947826 Msa0443290:intron 25.0%
!!! TATTTTGTCGGTTACAAATA+GGG - chr3_3:13948005-13948024 None:intergenic 25.0%
!!! ATATTTTGTCGGTTACAAAT+AGG - chr3_3:13948006-13948025 None:intergenic 25.0%
! TCATATCAAAACTTGCAAAA+TGG + chr3_3:13948031-13948050 Msa0443290:intron 25.0%
! AACATTAATGCATGTTCTTA+GGG - chr3_3:13948301-13948320 None:intergenic 25.0%
!!! TTTTGTTTATTACAGGAGTA+TGG - chr3_3:13948778-13948797 None:intergenic 25.0%
!!! TCTGCTATTTTGTTTATTAC+AGG - chr3_3:13948785-13948804 None:intergenic 25.0%
! ATGTGAATTGTAACATGAAT+CGG - chr3_3:13949081-13949100 None:intergenic 25.0%
! AGCCAAAAAAAAATAGAGAT+TGG - chr3_3:13949105-13949124 None:intergenic 25.0%
! CAATATTAAGTTCTTTCACA+AGG - chr3_3:13949565-13949584 None:intergenic 25.0%
! TCATTAAGTCTAGATTCAAA+TGG - chr3_3:13949806-13949825 None:intergenic 25.0%
!! TTAATCAAGTTTTTACTTGC+AGG + chr3_3:13949998-13950017 Msa0443290:five_prime_UTR 25.0%
! AAATGACTTAAGAATTGCTT+TGG - chr3_3:13950188-13950207 None:intergenic 25.0%
!!! TTTTAGATGATATCTGGAAT+GGG + chr3_3:13950290-13950309 Msa0443290:five_prime_UTR 25.0%
! TTGCTGTAAATCAAATAACT+CGG - chr3_3:13950428-13950447 None:intergenic 25.0%
!! GAAAATTTTCTCAACATGAA+TGG + chr3_3:13950605-13950624 Msa0443290:five_prime_UTR 25.0%
! ATATGTGGCAATTATTAGAT+GGG + chr3_3:13950647-13950666 Msa0443290:five_prime_UTR 25.0%
!!! TTAAAAAAGATGGATTGATC+AGG + chr3_3:13950773-13950792 Msa0443290:five_prime_UTR 25.0%
! TTTCAAGACTAAAATGTTTG+AGG + chr3_3:13951160-13951179 Msa0443290:five_prime_UTR 25.0%
! TGAGTTTGGAAAAATTTGAT+GGG - chr3_3:13951362-13951381 None:intergenic 25.0%
! ATGAGTTTGGAAAAATTTGA+TGG - chr3_3:13951363-13951382 None:intergenic 25.0%
! TTCCACAATAAAATATGACA+GGG - chr3_3:13951478-13951497 None:intergenic 25.0%
! CATGGAACAATTCTTATTAA+AGG + chr3_3:13951546-13951565 Msa0443290:five_prime_UTR 25.0%
! AACAATTCTTATTAAAGGGT+TGG + chr3_3:13951551-13951570 Msa0443290:five_prime_UTR 25.0%
! ACAATTCTTATTAAAGGGTT+GGG + chr3_3:13951552-13951571 Msa0443290:five_prime_UTR 25.0%
! TAATGGTACAAGAAAAGAAA+TGG + chr3_3:13951653-13951672 Msa0443290:five_prime_UTR 25.0%
! AGTTTAAGAGATACTAAGTT+GGG - chr3_3:13951807-13951826 None:intergenic 25.0%
! TAGTTTAAGAGATACTAAGT+TGG - chr3_3:13951808-13951827 None:intergenic 25.0%
! CTTAGTATCTCTTAAACTAA+AGG + chr3_3:13951809-13951828 Msa0443290:five_prime_UTR 25.0%
! CTCAAATTCCAAAACATTAA+GGG - chr3_3:13951973-13951992 None:intergenic 25.0%
! TCTCAAATTCCAAAACATTA+AGG - chr3_3:13951974-13951993 None:intergenic 25.0%
! AATTTGAGAAGATGAACAAT+TGG + chr3_3:13951985-13952004 Msa0443290:five_prime_UTR 25.0%
! ATTTGAGAAGATGAACAATT+GGG + chr3_3:13951986-13952005 Msa0443290:five_prime_UTR 25.0%
! ATATAAAGCTCTTTAAGCAA+AGG - chr3_3:13952038-13952057 None:intergenic 25.0%
!! ATATTCAGTTTTTGCAAAGA+AGG - chr3_3:13952104-13952123 None:intergenic 25.0%
! CTCTATAATATTATCACTCT+TGG - chr3_3:13952159-13952178 None:intergenic 25.0%
! AGGGAAAATTGATTAAACTT+TGG - chr3_3:13952283-13952302 None:intergenic 25.0%
! TATATAAAGGAAACTCAAGT+TGG - chr3_3:13952513-13952532 None:intergenic 25.0%
! TTGGACAATTCTCTATATAA+AGG - chr3_3:13952526-13952545 None:intergenic 25.0%
!!! AGCTTTGAACAATTAAACAA+AGG - chr3_3:13952686-13952705 None:intergenic 25.0%
! CTAAGAATAATGAACAACAA+GGG + chr3_3:13952704-13952723 Msa0443290:five_prime_UTR 25.0%
! TCATACTTCTCCTTTATTAT+TGG - chr3_3:13952848-13952867 None:intergenic 25.0%
!! AATAAAGGAGAAGTATGAAA+AGG + chr3_3:13952850-13952869 Msa0443290:five_prime_UTR 25.0%
!! ATAAAGGAGAAGTATGAAAA+GGG + chr3_3:13952851-13952870 Msa0443290:five_prime_UTR 25.0%
! AGAATATATGTTTGTACCTT+CGG - chr3_3:13953023-13953042 None:intergenic 25.0%
! AAATTCTAGATGCAATTGTT+TGG - chr3_3:13953049-13953068 None:intergenic 25.0%
!! ATGTATAGCTTTTACATCAA+TGG + chr3_3:13953164-13953183 Msa0443290:exon 25.0%
! ATATGGTAATTTACTTGAAG+AGG - chr3_3:13953210-13953229 None:intergenic 25.0%
! TGATTGAAACTAGTAATTGA+CGG + chr3_3:13953274-13953293 Msa0443290:intron 25.0%
! TGAAAGTTCACAAATCAAAT+TGG + chr3_3:13954143-13954162 Msa0443290:intron 25.0%
!!! AAATCAAATTGGTTTTCGTA+CGG + chr3_3:13954154-13954173 Msa0443290:intron 25.0%
! CTAGTTGTAAATACAGATAA+AGG - chr3_3:13954341-13954360 None:intergenic 25.0%
! TTGATATAAAGCTATCTCAA+TGG - chr3_3:13955031-13955050 None:intergenic 25.0%
!! AGCTTTATATCAAGTTATGA+AGG + chr3_3:13955038-13955057 Msa0443290:CDS 25.0%
! CATTTATCAGATATATGCAT+CGG + chr3_3:13955250-13955269 Msa0443290:intron 25.0%
GATATCAATGATGAAGTTTG+GGG - chr3_3:13946629-13946648 None:intergenic 30.0%
! AAATTACTTGAAAGTGTGTG+TGG - chr3_3:13946709-13946728 None:intergenic 30.0%
!!! AAGGAACGAATGAGTTTTTT+TGG - chr3_3:13947213-13947232 None:intergenic 30.0%
!! ATTTTGTCGGTTACAAATAG+GGG - chr3_3:13948004-13948023 None:intergenic 30.0%
CCAAAAAAAAAAAACCAACG+AGG - chr3_3:13948091-13948110 None:intergenic 30.0%
!!! CCTCGTTGGTTTTTTTTTTT+TGG + chr3_3:13948088-13948107 Msa0443290:intron 30.0%
! AATATGTGTGCAGGATTTTA+TGG - chr3_3:13948273-13948292 None:intergenic 30.0%
CAACATTAATGCATGTTCTT+AGG - chr3_3:13948302-13948321 None:intergenic 30.0%
CATATTAGAGATGCTTTACA+AGG - chr3_3:13948336-13948355 None:intergenic 30.0%
! GTAAAGCATCTCTAATATGA+AGG + chr3_3:13948337-13948356 Msa0443290:intron 30.0%
TATTTGTGAGAGTGATTGTT+TGG - chr3_3:13948424-13948443 None:intergenic 30.0%
TTAGAAGACTTTGGTTGTTT+AGG - chr3_3:13948591-13948610 None:intergenic 30.0%
ACACTGAAACTCAATATTGA+TGG - chr3_3:13948621-13948640 None:intergenic 30.0%
ATTTCTTACTATCCCAATCT+TGG - chr3_3:13948659-13948678 None:intergenic 30.0%
GCATTCATCATGTAACAAAA+AGG + chr3_3:13948679-13948698 Msa0443290:intron 30.0%
!! GAGAAACAATACCATTTTTG+AGG - chr3_3:13948741-13948760 None:intergenic 30.0%
TTTCTCTGAATTTGATGTCA+AGG - chr3_3:13948837-13948856 None:intergenic 30.0%
ACAATGAAGAATATCCTCTA+TGG + chr3_3:13948922-13948941 Msa0443290:intron 30.0%
CAATGAAGAATATCCTCTAT+GGG + chr3_3:13948923-13948942 Msa0443290:intron 30.0%
! AACAAAGCCATAAAAAGTGT+TGG + chr3_3:13949026-13949045 Msa0443290:intron 30.0%
!! CAAAACTCCAACACTTTTTA+TGG - chr3_3:13949036-13949055 None:intergenic 30.0%
!!! TTTTGGCTTGAATGTACTTT+TGG + chr3_3:13949117-13949136 Msa0443290:intron 30.0%
!! AAAAAATGAAGTTTTGGTCG+AGG - chr3_3:13949194-13949213 None:intergenic 30.0%
TGCTTCTGATTATGAAACAA+TGG - chr3_3:13949273-13949292 None:intergenic 30.0%
CTTCTCAATAATCACTTGAA+AGG - chr3_3:13949492-13949511 None:intergenic 30.0%
TCAAGTGATTATTGAGAAGT+TGG + chr3_3:13949493-13949512 Msa0443290:five_prime_UTR 30.0%
CAATTCTATCAACTTAGTAC+TGG + chr3_3:13949589-13949608 Msa0443290:five_prime_UTR 30.0%
AGTTCTTCACATATATGCTT+TGG - chr3_3:13949637-13949656 None:intergenic 30.0%
AAAGCATATATGTGAAGAAC+TGG + chr3_3:13949636-13949655 Msa0443290:five_prime_UTR 30.0%
TAGAAATCTCATCTAACAGT+TGG - chr3_3:13949697-13949716 None:intergenic 30.0%
ACTGTTAGATGAGATTTCTA+CGG + chr3_3:13949697-13949716 Msa0443290:five_prime_UTR 30.0%
! GTAGATGACAATCTTTTTGA+AGG - chr3_3:13949926-13949945 None:intergenic 30.0%
ATATGGTAGAGATGATGATA+AGG + chr3_3:13949970-13949989 Msa0443290:five_prime_UTR 30.0%
! AGCATTTTGAACTTAAAGCA+TGG + chr3_3:13950125-13950144 Msa0443290:five_prime_UTR 30.0%
! GCATTTTGAACTTAAAGCAT+GGG + chr3_3:13950126-13950145 Msa0443290:five_prime_UTR 30.0%
! TCAGAATCTTTTGATGTTGT+TGG + chr3_3:13950157-13950176 Msa0443290:five_prime_UTR 30.0%
!!! TGCTTGTTTTAGATGATATC+TGG + chr3_3:13950284-13950303 Msa0443290:five_prime_UTR 30.0%
!! GTTTTAGATGATATCTGGAA+TGG + chr3_3:13950289-13950308 Msa0443290:five_prime_UTR 30.0%
! TTTAGATGATATCTGGAATG+GGG + chr3_3:13950291-13950310 Msa0443290:five_prime_UTR 30.0%
AATTGAAAACAAGCCATTGT+TGG + chr3_3:13950446-13950465 Msa0443290:five_prime_UTR 30.0%
TCACAAATAAACTCCAACAA+TGG - chr3_3:13950462-13950481 None:intergenic 30.0%
! TTTGTGATACATGCTTTTCA+AGG + chr3_3:13950475-13950494 Msa0443290:five_prime_UTR 30.0%
CCTTTAGCTGTAAAAACATT+GGG + chr3_3:13950568-13950587 Msa0443290:five_prime_UTR 30.0%
CTTTAGCTGTAAAAACATTG+GGG + chr3_3:13950569-13950588 Msa0443290:five_prime_UTR 30.0%
GATATGTGGCAATTATTAGA+TGG + chr3_3:13950646-13950665 Msa0443290:five_prime_UTR 30.0%
TATGTGGCAATTATTAGATG+GGG + chr3_3:13950648-13950667 Msa0443290:five_prime_UTR 30.0%
!! TATTGTTCCATTTTTCCCAA+GGG + chr3_3:13950742-13950761 Msa0443290:five_prime_UTR 30.0%
! CGTTTTTCCAAATATCACAT+CGG + chr3_3:13950890-13950909 Msa0443290:five_prime_UTR 30.0%
TGAGGTTGTTATCATTTAGA+TGG + chr3_3:13951178-13951197 Msa0443290:five_prime_UTR 30.0%
TTGTTATCATTTAGATGGTG+TGG + chr3_3:13951183-13951202 Msa0443290:five_prime_UTR 30.0%
TTCTAATCTCAGTGTATGAA+AGG - chr3_3:13951263-13951282 None:intergenic 30.0%
TACAACATACAAATGCTATC+AGG - chr3_3:13951291-13951310 None:intergenic 30.0%
ATGACGTAAATTGATGAGTT+TGG - chr3_3:13951376-13951395 None:intergenic 30.0%
!!! TTTTGTTTTCCCATATGCTT+TGG - chr3_3:13951444-13951463 None:intergenic 30.0%
! AACCCTGTCATATTTTATTG+TGG + chr3_3:13951473-13951492 Msa0443290:five_prime_UTR 30.0%
CTTCCACAATAAAATATGAC+AGG - chr3_3:13951479-13951498 None:intergenic 30.0%
! TTTATTGTGGAAGAGCATAA+TGG + chr3_3:13951486-13951505 Msa0443290:five_prime_UTR 30.0%
TAAGAATTGTTCCATGAAGA+TGG - chr3_3:13951542-13951561 None:intergenic 30.0%
AATCAAATAGCAACTTGAAG+AGG + chr3_3:13951721-13951740 Msa0443290:five_prime_UTR 30.0%
ATTACCTTTGTATTGTGAGA+TGG - chr3_3:13951751-13951770 None:intergenic 30.0%
AAGGTAATAGCTTTCCAAAT+TGG + chr3_3:13951763-13951782 Msa0443290:five_prime_UTR 30.0%
TGTCATGGAATAAAGATCAT+TGG + chr3_3:13951903-13951922 Msa0443290:five_prime_UTR 30.0%
ATCATTGGTGAAGAGATTTA+TGG + chr3_3:13951918-13951937 Msa0443290:five_prime_UTR 30.0%
AAAACATTAAGGGACAAGAA+AGG - chr3_3:13951963-13951982 None:intergenic 30.0%
! TTTCTTGTCCCTTAATGTTT+TGG + chr3_3:13951962-13951981 Msa0443290:five_prime_UTR 30.0%
TAAACTGTCCCAATTTGAAA+AGG + chr3_3:13952060-13952079 Msa0443290:five_prime_UTR 30.0%
AAACTGTCCCAATTTGAAAA+GGG + chr3_3:13952061-13952080 Msa0443290:five_prime_UTR 30.0%
! TTATAATTGCAACAAGTTGG+AGG + chr3_3:13952124-13952143 Msa0443290:five_prime_UTR 30.0%
ATTGATTAAACTTTGGTCCA+CGG - chr3_3:13952276-13952295 None:intergenic 30.0%
CTTCATCAACTTTCAATAAC+AGG + chr3_3:13952377-13952396 Msa0443290:five_prime_UTR 30.0%
ATCAACTTTCAATAACAGGA+TGG + chr3_3:13952381-13952400 Msa0443290:five_prime_UTR 30.0%
TCAACTTTCAATAACAGGAT+GGG + chr3_3:13952382-13952401 Msa0443290:five_prime_UTR 30.0%
AATGTTTCAAGGAATTGAGT+TGG - chr3_3:13952583-13952602 None:intergenic 30.0%
TGATTATGAGTTTGAAAACG+TGG + chr3_3:13952613-13952632 Msa0443290:five_prime_UTR 30.0%
GCTAAGAATAATGAACAACA+AGG + chr3_3:13952703-13952722 Msa0443290:five_prime_UTR 30.0%
ATAGATAACTGAGAGATTTG+AGG - chr3_3:13952739-13952758 None:intergenic 30.0%
! TAAAGGAGAAGTATGAAAAG+GGG + chr3_3:13952852-13952871 Msa0443290:five_prime_UTR 30.0%
ATCCCAAATGTGATAATTGA+CGG + chr3_3:13952905-13952924 Msa0443290:five_prime_UTR 30.0%
TTCCGTCAATTATCACATTT+GGG - chr3_3:13952910-13952929 None:intergenic 30.0%
ATTCCGTCAATTATCACATT+TGG - chr3_3:13952911-13952930 None:intergenic 30.0%
ATGTGATAATTGACGGAATT+TGG + chr3_3:13952912-13952931 Msa0443290:five_prime_UTR 30.0%
! TTTTTATTCCCAGGCTAAAT+TGG + chr3_3:13953107-13953126 Msa0443290:intron 30.0%
AATGTGATTAACCAGAATAG+GGG - chr3_3:13953319-13953338 None:intergenic 30.0%
GAATGTGATTAACCAGAATA+GGG - chr3_3:13953320-13953339 None:intergenic 30.0%
AGAATGTGATTAACCAGAAT+AGG - chr3_3:13953321-13953340 None:intergenic 30.0%
TGAGAAAATTGTCAACAAAG+TGG - chr3_3:13953443-13953462 None:intergenic 30.0%
! AAATGGCAGTTAGTATCTTT+TGG - chr3_3:13953567-13953586 None:intergenic 30.0%
TATCCAAATACCTCTGATTA+GGG - chr3_3:13953734-13953753 None:intergenic 30.0%
ATATCCAAATACCTCTGATT+AGG - chr3_3:13953735-13953754 None:intergenic 30.0%
! TTGTCTGCAACAAATTTTCA+TGG + chr3_3:13953980-13953999 Msa0443290:intron 30.0%
TTTCATGGAGCATATTAAAC+TGG + chr3_3:13953995-13954014 Msa0443290:intron 30.0%
!!! AATCAAATTGGTTTTCGTAC+GGG + chr3_3:13954155-13954174 Msa0443290:intron 30.0%
ATTCGTTAATCTCCACATAA+GGG - chr3_3:13954370-13954389 None:intergenic 30.0%
AATTCGTTAATCTCCACATA+AGG - chr3_3:13954371-13954390 None:intergenic 30.0%
ATAGTCAAGTATCCATATGT+AGG - chr3_3:13954446-13954465 None:intergenic 30.0%
ACATATGGATACTTGACTAT+TGG + chr3_3:13954446-13954465 Msa0443290:intron 30.0%
ACGTTAAAGAGACCAAAAAA+GGG - chr3_3:13954540-13954559 None:intergenic 30.0%
TACGTTAAAGAGACCAAAAA+AGG - chr3_3:13954541-13954560 None:intergenic 30.0%
! ATCATCACATTCTTTTCTCA+AGG - chr3_3:13954608-13954627 None:intergenic 30.0%
ATTGAGAGATTTATGCACAA+AGG + chr3_3:13954658-13954677 Msa0443290:intron 30.0%
AAGCATATCACTTGTAAACT+TGG - chr3_3:13954797-13954816 None:intergenic 30.0%
! TTTACTTTGAAAAATGCAGC+AGG + chr3_3:13954987-13955006 Msa0443290:intron 30.0%
TGAATAGAGAGAATTAAGTG+TGG - chr3_3:13955160-13955179 None:intergenic 30.0%
CGATGCATATATCTGATAAA+TGG - chr3_3:13955252-13955271 None:intergenic 30.0%
!! TCTTCACAAAGATGTTTTTG+AGG + chr3_3:13955397-13955416 Msa0443290:intron 30.0%
AGAAGAAGAAGAAGACTTAT+TGG + chr3_3:13955518-13955537 Msa0443290:CDS 30.0%
CATGATGTTTGGAGAATCAA+TGG - chr3_3:13946566-13946585 None:intergenic 35.0%
CTTCCTCTAAGTCTTTCTTT+GGG + chr3_3:13946657-13946676 Msa0443290:five_prime_UTR 35.0%
AAAGTCAAAAGATTGTCACG+TGG - chr3_3:13947867-13947886 None:intergenic 35.0%
GGTAGTGTTACAAAGTAACA+AGG + chr3_3:13948119-13948138 Msa0443290:intron 35.0%
CATAGAATCTCTCATTCTGA+GGG - chr3_3:13948195-13948214 None:intergenic 35.0%
ACATAGAATCTCTCATTCTG+AGG - chr3_3:13948196-13948215 None:intergenic 35.0%
AGAATGAGAGATTCTATGTC+AGG + chr3_3:13948197-13948216 Msa0443290:intron 35.0%
AGAGATGCTTTACAAGGAAA+TGG - chr3_3:13948330-13948349 None:intergenic 35.0%
!! GGTAGCTTTTTAGAAGACTT+TGG - chr3_3:13948600-13948619 None:intergenic 35.0%
TTACTATCCCAATCTTGGTT+TGG - chr3_3:13948654-13948673 None:intergenic 35.0%
!! CCATTTTTGAGGATCAACAT+TGG - chr3_3:13948730-13948749 None:intergenic 35.0%
CCAATGTTGATCCTCAAAAA+TGG + chr3_3:13948727-13948746 Msa0443290:intron 35.0%
CTGAATTTGATGTCAAGGTT+TGG - chr3_3:13948832-13948851 None:intergenic 35.0%
!!! AAAAAGTGTTGGAGTTTTGC+TGG + chr3_3:13949037-13949056 Msa0443290:intron 35.0%
! ATTGTAACATGAATCGGCTT+TGG - chr3_3:13949075-13949094 None:intergenic 35.0%
!! AATCAGAAGCATTGTATGAG+TGG + chr3_3:13949282-13949301 Msa0443290:intron 35.0%
AGAACTCATTTATCTTGCAG+AGG + chr3_3:13949397-13949416 Msa0443290:intron 35.0%
ATTTATCTTGCAGAGGCTTT+AGG + chr3_3:13949404-13949423 Msa0443290:intron 35.0%
TCAACATATCATGGCAGAAT+TGG + chr3_3:13949442-13949461 Msa0443290:five_prime_UTR 35.0%
! GATTATTGAGAAGTTGGCTT+CGG + chr3_3:13949499-13949518 Msa0443290:five_prime_UTR 35.0%
GTTGATATCAGAGACTACTT+CGG + chr3_3:13949521-13949540 Msa0443290:five_prime_UTR 35.0%
ACCACTTACCACCAATTTAT+TGG + chr3_3:13949754-13949773 Msa0443290:five_prime_UTR 35.0%
CCACTTACCACCAATTTATT+GGG + chr3_3:13949755-13949774 Msa0443290:five_prime_UTR 35.0%
TGAAACCAAGCCCAATAAAT+TGG - chr3_3:13949768-13949787 None:intergenic 35.0%
ATGGATGAGTCAAGCATATA+TGG + chr3_3:13949953-13949972 Msa0443290:five_prime_UTR 35.0%
GTTCCAATAATCAGCATAGT+CGG + chr3_3:13950040-13950059 Msa0443290:five_prime_UTR 35.0%
! AAACCGACTATGCTGATTAT+TGG - chr3_3:13950046-13950065 None:intergenic 35.0%
! ATAATCAGCATAGTCGGTTT+AGG + chr3_3:13950046-13950065 Msa0443290:five_prime_UTR 35.0%
TCATTTAATTCTTCGGCAGA+TGG + chr3_3:13950202-13950221 Msa0443290:five_prime_UTR 35.0%
TTACTTCTTCCCTTTAACCA+TGG + chr3_3:13950334-13950353 Msa0443290:five_prime_UTR 35.0%
CTGTAAATCAAATAACTCGG+TGG - chr3_3:13950425-13950444 None:intergenic 35.0%
GCCTTTAGCTGTAAAAACAT+TGG + chr3_3:13950567-13950586 Msa0443290:five_prime_UTR 35.0%
!! CCCAATGTTTTTACAGCTAA+AGG - chr3_3:13950571-13950590 None:intergenic 35.0%
! ACATGAATGGTCTGAGATAT+TGG + chr3_3:13950618-13950637 Msa0443290:five_prime_UTR 35.0%
AGATATTGGAGACTGATATG+TGG + chr3_3:13950632-13950651 Msa0443290:five_prime_UTR 35.0%
CTTGGGAAAAATGGAACAAT+AGG - chr3_3:13950743-13950762 None:intergenic 35.0%
!! CTATTGTTCCATTTTTCCCA+AGG + chr3_3:13950741-13950760 Msa0443290:five_prime_UTR 35.0%
TTCATAACCCTTGGGAAAAA+TGG - chr3_3:13950752-13950771 None:intergenic 35.0%
GACAAAAGAGAAGAAGAGTT+AGG + chr3_3:13950835-13950854 Msa0443290:five_prime_UTR 35.0%
GACAAGATCATGCATGAAAT+AGG - chr3_3:13950920-13950939 None:intergenic 35.0%
GATTTATCCAAATCAGTGTC+AGG + chr3_3:13950943-13950962 Msa0443290:five_prime_UTR 35.0%
! AAATTCTCCTGACACTGATT+TGG - chr3_3:13950953-13950972 None:intergenic 35.0%
!! TAAGCAAATAAAGGGTGCTA+TGG + chr3_3:13950975-13950994 Msa0443290:five_prime_UTR 35.0%
TAGTGCCTCTATAATCACTT+GGG - chr3_3:13951407-13951426 None:intergenic 35.0%
AAAGAAGATGCCAAAGCATA+TGG + chr3_3:13951431-13951450 Msa0443290:five_prime_UTR 35.0%
AAGAAGATGCCAAAGCATAT+GGG + chr3_3:13951432-13951451 Msa0443290:five_prime_UTR 35.0%
TGGATCTGATCTTAAAGAGT+TGG + chr3_3:13951506-13951525 Msa0443290:five_prime_UTR 35.0%
GCAAAACTAAACCATCTTCA+TGG + chr3_3:13951528-13951547 Msa0443290:five_prime_UTR 35.0%
GGTACAAGAAAAGAAATGGA+TGG + chr3_3:13951657-13951676 Msa0443290:five_prime_UTR 35.0%
CTTACCATCTCACAATACAA+AGG + chr3_3:13951744-13951763 Msa0443290:five_prime_UTR 35.0%
ATAGCTTTCCAAATTGGCTA+AGG + chr3_3:13951769-13951788 Msa0443290:five_prime_UTR 35.0%
TAGCTTTCCAAATTGGCTAA+GGG + chr3_3:13951770-13951789 Msa0443290:five_prime_UTR 35.0%
TCTCTTAAACTAAAGGGTTG+TGG + chr3_3:13951816-13951835 Msa0443290:five_prime_UTR 35.0%
! ATAGAAAGCTTCTGGAGAAA+GGG - chr3_3:13951876-13951895 None:intergenic 35.0%
! AATAGAAAGCTTCTGGAGAA+AGG - chr3_3:13951877-13951896 None:intergenic 35.0%
! AGTCTGAAATAGAAAGCTTC+TGG - chr3_3:13951884-13951903 None:intergenic 35.0%
CTTTCTATTTCAGACTGTCA+TGG + chr3_3:13951888-13951907 Msa0443290:five_prime_UTR 35.0%
GAGTTAGATATACAGAGATG+TGG + chr3_3:13952176-13952195 Msa0443290:five_prime_UTR 35.0%
! ACAGAGATGTGGTAGAATTT+TGG + chr3_3:13952187-13952206 Msa0443290:five_prime_UTR 35.0%
!!! AGTAACTTTTTCAGGCTAGT+CGG - chr3_3:13952224-13952243 None:intergenic 35.0%
CTCTGTAAAATGTCCTTCTT+TGG + chr3_3:13952334-13952353 Msa0443290:five_prime_UTR 35.0%
TAGCAACGTAAATCCAAAGA+AGG - chr3_3:13952350-13952369 None:intergenic 35.0%
CAACTTTCAATAACAGGATG+GGG + chr3_3:13952383-13952402 Msa0443290:five_prime_UTR 35.0%
GTGAACAAGTGTAGTGAAAA+AGG - chr3_3:13952422-13952441 None:intergenic 35.0%
CAGATGAAGAGATTGAAGTT+TGG - chr3_3:13952444-13952463 None:intergenic 35.0%
!! TAAAGGAAACTCAAGTTGGA+AGG - chr3_3:13952509-13952528 None:intergenic 35.0%
GAGAATTGTCCAAAACTGAT+TGG + chr3_3:13952533-13952552 Msa0443290:five_prime_UTR 35.0%
TCCTTGAAACATTTCACTGT+TGG + chr3_3:13952590-13952609 Msa0443290:five_prime_UTR 35.0%
ACCAACAGTGAAATGTTTCA+AGG - chr3_3:13952594-13952613 None:intergenic 35.0%
AAAGGAAGAAACTCAAGAGT+TGG - chr3_3:13952668-13952687 None:intergenic 35.0%
! AAAGGAGAAGTATGAAAAGG+GGG + chr3_3:13952853-13952872 Msa0443290:five_prime_UTR 35.0%
AAAAAGGTTTGACCAAACGT+GGG - chr3_3:13952996-13953015 None:intergenic 35.0%
! GACTTCAACTTTTTATTCCC+AGG + chr3_3:13953098-13953117 Msa0443290:intron 35.0%
AACCACATTTCCACATTTCA+TGG + chr3_3:13953665-13953684 Msa0443290:CDS 35.0%
GTTGTAGTAAATACCAGCTT+TGG - chr3_3:13953783-13953802 None:intergenic 35.0%
ATAGAATCCAAACCACCTTA+GGG - chr3_3:13953862-13953881 None:intergenic 35.0%
GCAGTAAGTGAAAAGGAATT+GGG - chr3_3:13953896-13953915 None:intergenic 35.0%
TGCAGTAAGTGAAAAGGAAT+TGG - chr3_3:13953897-13953916 None:intergenic 35.0%
TTCACATGCAGTAAGTGAAA+AGG - chr3_3:13953903-13953922 None:intergenic 35.0%
GTGTTCAAGCATTACAAACA+AGG + chr3_3:13954048-13954067 Msa0443290:intron 35.0%
GCATTACAAACAAGGTACAT+TGG + chr3_3:13954056-13954075 Msa0443290:intron 35.0%
!!! ACAAGGTACATTGGTTTTTG+AGG + chr3_3:13954065-13954084 Msa0443290:intron 35.0%
AAAGGACTAAGAAACAAGCA+AGG - chr3_3:13954323-13954342 None:intergenic 35.0%
TGCTAGGAAGACTAAGTTAT+GGG + chr3_3:13954419-13954438 Msa0443290:intron 35.0%
TAAGTTATGGGTCCTACATA+TGG + chr3_3:13954431-13954450 Msa0443290:intron 35.0%
ACAATCTGAATCCACATTGT+AGG + chr3_3:13954513-13954532 Msa0443290:intron 35.0%
AGAGATTTATGCACAAAGGT+AGG + chr3_3:13954662-13954681 Msa0443290:intron 35.0%
TAGAAGGTTGCGACTTATAA+AGG + chr3_3:13954899-13954918 Msa0443290:intron 35.0%
AGATGATCTTGCACATTGAA+AGG + chr3_3:13955070-13955089 Msa0443290:CDS 35.0%
TAAGTGCTCACAACATTCTT+CGG + chr3_3:13955134-13955153 Msa0443290:intron 35.0%
GAACAGGAATCAAGTCTAAA+TGG - chr3_3:13955190-13955209 None:intergenic 35.0%
!! AGTGTATTCACCACTAGTTT+TGG + chr3_3:13955210-13955229 Msa0443290:intron 35.0%
AAAACAACCACCAAAACTAG+TGG - chr3_3:13955223-13955242 None:intergenic 35.0%
! GCTTTTTGCAGATTGAAAGA+TGG + chr3_3:13955323-13955342 Msa0443290:intron 35.0%
TTGAGAGATTTATAGACACC+AGG + chr3_3:13955422-13955441 Msa0443290:intron 35.0%
! AAGAGAGTCAAACATTTTCC+TGG - chr3_3:13955443-13955462 None:intergenic 35.0%
GCTTCCTCTAAGTCTTTCTT+TGG + chr3_3:13946656-13946675 Msa0443290:five_prime_UTR 40.0%
TCTCCCAAAGAAAGACTTAG+AGG - chr3_3:13946663-13946682 None:intergenic 40.0%
TCACTTCACAGATCTCAGTT+TGG + chr3_3:13946808-13946827 Msa0443290:intron 40.0%
! ATAGTGGTCTGAAGTCTGAA+AGG + chr3_3:13947513-13947532 Msa0443290:intron 40.0%
! AATCATTTTCGCTTCCTCGT+TGG + chr3_3:13948074-13948093 Msa0443290:intron 40.0%
ATGAGAGATTCTATGTCAGG+CGG + chr3_3:13948200-13948219 Msa0443290:intron 40.0%
! CAGGATTTTATGGCTAAGGA+AGG - chr3_3:13948263-13948282 None:intergenic 40.0%
! TGTGCAGGATTTTATGGCTA+AGG - chr3_3:13948267-13948286 None:intergenic 40.0%
AGGGAACAAAATATGTGTGC+AGG - chr3_3:13948282-13948301 None:intergenic 40.0%
GTCAGTAGCATAAGTGTGTA+AGG + chr3_3:13948362-13948381 Msa0443290:intron 40.0%
ACCAGCAGTAATTAGGTCAA+CGG + chr3_3:13948395-13948414 Msa0443290:intron 40.0%
ATTGAGTTTCAGTGTGAGTG+TGG + chr3_3:13948626-13948645 Msa0443290:intron 40.0%
TTGAGTTTCAGTGTGAGTGT+GGG + chr3_3:13948627-13948646 Msa0443290:intron 40.0%
ACATTGGCGTATTCAAGATG+TGG - chr3_3:13948714-13948733 None:intergenic 40.0%
! TTACAGGAGTATGGTATGCT+TGG - chr3_3:13948769-13948788 None:intergenic 40.0%
TGGCTTCATGAGATGACAAA+GGG - chr3_3:13948812-13948831 None:intergenic 40.0%
TTGGCTTCATGAGATGACAA+AGG - chr3_3:13948813-13948832 None:intergenic 40.0%
! GGAGTTTTGCTGGTACTTTA+AGG + chr3_3:13949047-13949066 Msa0443290:intron 40.0%
! CAACTTAGTACTGGATGAAG+CGG + chr3_3:13949598-13949617 Msa0443290:five_prime_UTR 40.0%
! CCCAATAAATTGGTGGTAAG+TGG - chr3_3:13949758-13949777 None:intergenic 40.0%
TACCACCAATTTATTGGGCT+TGG + chr3_3:13949760-13949779 Msa0443290:five_prime_UTR 40.0%
AACCAAGCCCAATAAATTGG+TGG - chr3_3:13949765-13949784 None:intergenic 40.0%
TGCAAAGCCAAAGAAAGAGT+TGG + chr3_3:13949850-13949869 Msa0443290:five_prime_UTR 40.0%
GCAAAGCCAAAGAAAGAGTT+GGG + chr3_3:13949851-13949870 Msa0443290:five_prime_UTR 40.0%
ACCAATCCCAACTCTTTCTT+TGG - chr3_3:13949860-13949879 None:intergenic 40.0%
! AAAGAGTTGGGATTGGTAGA+AGG + chr3_3:13949863-13949882 Msa0443290:five_prime_UTR 40.0%
AAGCCTTCATTACTAGCACA+AGG - chr3_3:13949890-13949909 None:intergenic 40.0%
GTAATGAAGGCTTAGTCAGT+TGG + chr3_3:13949897-13949916 Msa0443290:five_prime_UTR 40.0%
ATTGTCATCTACAGCTCTCA+TGG + chr3_3:13949934-13949953 Msa0443290:five_prime_UTR 40.0%
! CTATGCTGATTATTGGAACC+CGG - chr3_3:13950039-13950058 None:intergenic 40.0%
GTTGTACACAAGCTTAGCAA+GGG - chr3_3:13950089-13950108 None:intergenic 40.0%
GTACAACGACAACAAGATAG+AGG + chr3_3:13950102-13950121 Msa0443290:five_prime_UTR 40.0%
TCAACTCCAACACATGCTAA+TGG + chr3_3:13950249-13950268 Msa0443290:five_prime_UTR 40.0%
CAACTCCAACACATGCTAAT+GGG + chr3_3:13950250-13950269 Msa0443290:five_prime_UTR 40.0%
AACTCCAACACATGCTAATG+GGG + chr3_3:13950251-13950270 Msa0443290:five_prime_UTR 40.0%
CCAGAAGATCCATGGTTAAA+GGG - chr3_3:13950346-13950365 None:intergenic 40.0%
TCCAGAAGATCCATGGTTAA+AGG - chr3_3:13950347-13950366 None:intergenic 40.0%
TCTTACTTCCAGAAGATCCA+TGG - chr3_3:13950354-13950373 None:intergenic 40.0%
TATCGTGACAACACGTGAAA+AGG + chr3_3:13950375-13950394 Msa0443290:five_prime_UTR 40.0%
TATCCAACCCTTGAAGCAAT+TGG + chr3_3:13950514-13950533 Msa0443290:five_prime_UTR 40.0%
TTTCCTGCCAATTGCTTCAA+GGG - chr3_3:13950524-13950543 None:intergenic 40.0%
! TTTTCCTGCCAATTGCTTCA+AGG - chr3_3:13950525-13950544 None:intergenic 40.0%
AGCAATTGGCAGGAAAATAG+TGG + chr3_3:13950528-13950547 Msa0443290:five_prime_UTR 40.0%
!! AGGAAAATAGTGGACAAGTG+TGG + chr3_3:13950538-13950557 Msa0443290:five_prime_UTR 40.0%
!! AAAATAGTGGACAAGTGTGG+AGG + chr3_3:13950541-13950560 Msa0443290:five_prime_UTR 40.0%
!! AAATAGTGGACAAGTGTGGA+GGG + chr3_3:13950542-13950561 Msa0443290:five_prime_UTR 40.0%
!! AAGATGGATTGATCAGGCTT+TGG + chr3_3:13950779-13950798 Msa0443290:five_prime_UTR 40.0%
!! GAAGGTTTGTTGAAGTGTTG+CGG + chr3_3:13950808-13950827 Msa0443290:five_prime_UTR 40.0%
AGGTGTTCCGATGTGATATT+TGG - chr3_3:13950900-13950919 None:intergenic 40.0%
TTGAAAGGACGCGTCATATT+CGG + chr3_3:13951010-13951029 Msa0443290:five_prime_UTR 40.0%
! TAATTTGCAAACGCTCTTGC+TGG + chr3_3:13951311-13951330 Msa0443290:five_prime_UTR 40.0%
GAACTCCCAAGTGATTATAG+AGG + chr3_3:13951399-13951418 Msa0443290:five_prime_UTR 40.0%
CTAGTGCCTCTATAATCACT+TGG - chr3_3:13951408-13951427 None:intergenic 40.0%
TGAATGCAATGTGTCTGTCT+TGG + chr3_3:13951689-13951708 Msa0443290:five_prime_UTR 40.0%
AGCTTTCCAAATTGGCTAAG+GGG + chr3_3:13951771-13951790 Msa0443290:five_prime_UTR 40.0%
! TAGAAAGCTTCTGGAGAAAG+GGG - chr3_3:13951875-13951894 None:intergenic 40.0%
TGAGAAGATGAACAATTGGG+AGG + chr3_3:13951989-13952008 Msa0443290:five_prime_UTR 40.0%
TGCAAAGAAGGAACATGTTG+AGG - chr3_3:13952092-13952111 None:intergenic 40.0%
!! GCAGAAGGAGTAACTTTTTC+AGG - chr3_3:13952232-13952251 None:intergenic 40.0%
AGTTACTCCTTCTGCGAAAT+CGG + chr3_3:13952237-13952256 Msa0443290:five_prime_UTR 40.0%
! TTTTCCCTTTCTTGAAGCGT+TGG + chr3_3:13952295-13952314 Msa0443290:five_prime_UTR 40.0%
AACTCCAACGCTTCAAGAAA+GGG - chr3_3:13952302-13952321 None:intergenic 40.0%
CAAGTGTAGTGAAAAAGGCA+AGG - chr3_3:13952417-13952436 None:intergenic 40.0%
ATTGGAAATGATTCCAGCTC+TGG - chr3_3:13952476-13952495 None:intergenic 40.0%
AGAGCTGGAATCATTTCCAA+TGG + chr3_3:13952475-13952494 Msa0443290:five_prime_UTR 40.0%
GAGCTGGAATCATTTCCAAT+GGG + chr3_3:13952476-13952495 Msa0443290:five_prime_UTR 40.0%
! TCTCTCGAACCAATCAGTTT+TGG - chr3_3:13952545-13952564 None:intergenic 40.0%
!! AAAACTGATTGGTTCGAGAG+AGG + chr3_3:13952544-13952563 Msa0443290:five_prime_UTR 40.0%
GATAACTGAGAGATTTGAGG+TGG - chr3_3:13952736-13952755 None:intergenic 40.0%
GACAACCAAGAAAGAGAGTT+GGG - chr3_3:13952812-13952831 None:intergenic 40.0%
! AAGGAGAAGTATGAAAAGGG+GGG + chr3_3:13952854-13952873 Msa0443290:five_prime_UTR 40.0%
! TTTTGCTAGCACTAATGTGG+TGG - chr3_3:13952960-13952979 None:intergenic 40.0%
!! TGGTTTTGCTAGCACTAATG+TGG - chr3_3:13952963-13952982 None:intergenic 40.0%
GTGCTAGCAAAACCAAGTTA+CGG + chr3_3:13952968-13952987 Msa0443290:five_prime_UTR 40.0%
TGCTAGCAAAACCAAGTTAC+GGG + chr3_3:13952969-13952988 Msa0443290:five_prime_UTR 40.0%
CAAAAAGGTTTGACCAAACG+TGG - chr3_3:13952997-13953016 None:intergenic 40.0%
! CACGTTTGGTCAAACCTTTT+TGG + chr3_3:13952995-13953014 Msa0443290:five_prime_UTR 40.0%
!!! TCAAACCTTTTTGGTTCCGA+AGG + chr3_3:13953004-13953023 Msa0443290:five_prime_UTR 40.0%
TTGTACCTTCGGAACCAAAA+AGG - chr3_3:13953012-13953031 None:intergenic 40.0%
TTCCGAACCATTAGTCCTTA+TGG + chr3_3:13953405-13953424 Msa0443290:intron 40.0%
TCCGAACCATTAGTCCTTAT+GGG + chr3_3:13953406-13953425 Msa0443290:intron 40.0%
AGCCATGAAATGTGGAAATG+TGG - chr3_3:13953670-13953689 None:intergenic 40.0%
CTTGTTGAAGCCATGAAATG+TGG - chr3_3:13953678-13953697 None:intergenic 40.0%
! GCTTCAACAAGATTTGCTTC+AGG + chr3_3:13953687-13953706 Msa0443290:CDS 40.0%
AGAAAGTCTTCCCTAATCAG+AGG + chr3_3:13953721-13953740 Msa0443290:CDS 40.0%
!! CTTCCCTAATCAGAGGTATT+TGG + chr3_3:13953728-13953747 Msa0443290:intron 40.0%
TTGATTTCTTTCGCCAAAGC+TGG + chr3_3:13953767-13953786 Msa0443290:intron 40.0%
TAGAATCCAAACCACCTTAG+GGG - chr3_3:13953861-13953880 None:intergenic 40.0%
GATAGAATCCAAACCACCTT+AGG - chr3_3:13953863-13953882 None:intergenic 40.0%
AACCTCTTTCCGAGGTTATT+TGG + chr3_3:13954088-13954107 Msa0443290:intron 40.0%
TACCAAATAACCTCGGAAAG+AGG - chr3_3:13954093-13954112 None:intergenic 40.0%
! TTAGTCTTCCTAGCACTATG+TGG - chr3_3:13954414-13954433 None:intergenic 40.0%
GTGCTAGGAAGACTAAGTTA+TGG + chr3_3:13954418-13954437 Msa0443290:intron 40.0%
CAAAAAAGGGTCCTACAATG+TGG - chr3_3:13954527-13954546 None:intergenic 40.0%
!!! CACATTGTAGGACCCTTTTT+TGG + chr3_3:13954525-13954544 Msa0443290:intron 40.0%
TCCTGTTGTTGAGCATTAGA+AGG + chr3_3:13954883-13954902 Msa0443290:intron 40.0%
ACCTTCTAATGCTCAACAAC+AGG - chr3_3:13954887-13954906 None:intergenic 40.0%
! CTTTGAAAAATGCAGCAGGA+TGG + chr3_3:13954991-13955010 Msa0443290:intron 40.0%
ATCAAGTTATGAAGGAAGCC+TGG + chr3_3:13955046-13955065 Msa0443290:CDS 40.0%
TCAAGTTATGAAGGAAGCCT+GGG + chr3_3:13955047-13955066 Msa0443290:CDS 40.0%
TGCTCACTGCTTTATACCAA+TGG + chr3_3:13955111-13955130 Msa0443290:CDS 40.0%
ATGTTGTGAGCACTTACCAT+TGG - chr3_3:13955130-13955149 None:intergenic 40.0%
TAGTGGTGAATACACTGAAC+AGG - chr3_3:13955206-13955225 None:intergenic 40.0%
!!! GTATTCACCACTAGTTTTGG+TGG + chr3_3:13955213-13955232 Msa0443290:intron 40.0%
CTGCAAAAAGCAATGCACAT+GGG - chr3_3:13955314-13955333 None:intergenic 40.0%
TCTGCAAAAAGCAATGCACA+TGG - chr3_3:13955315-13955334 None:intergenic 40.0%
ACATGAGAAGCTGAATGGTT+AGG - chr3_3:13955368-13955387 None:intergenic 40.0%
TCATGACATGAGAAGCTGAA+TGG - chr3_3:13955373-13955392 None:intergenic 40.0%
TCAGCTTCTCATGTCATGAT+AGG + chr3_3:13955374-13955393 Msa0443290:intron 40.0%
! GATTTCTTCTCTTGATAGCC+AGG - chr3_3:13955473-13955492 None:intergenic 40.0%
TATTGGACTTGAGCTCTCTT+TGG + chr3_3:13955535-13955554 Msa0443290:CDS 40.0%
TCTGCAGATACACGTGATAC+AGG - chr3_3:13947020-13947039 None:intergenic 45.0%
! CTCATTCTGAGGGATAAGCT+TGG - chr3_3:13948185-13948204 None:intergenic 45.0%
CTAAGGAAGGATCACATGCA+AGG - chr3_3:13948250-13948269 None:intergenic 45.0%
GATCACGACCAGCAGTAATT+AGG + chr3_3:13948388-13948407 Msa0443290:intron 45.0%
TTCTCTCACTATGAAGCTGG+AGG - chr3_3:13948522-13948541 None:intergenic 45.0%
GGTTTCTCTCACTATGAAGC+TGG - chr3_3:13948525-13948544 None:intergenic 45.0%
CACGATGGAAATTGGATAGC+TGG - chr3_3:13948546-13948565 None:intergenic 45.0%
CAGCTATCCAATTTCCATCG+TGG + chr3_3:13948544-13948563 Msa0443290:intron 45.0%
TTCGCAACCACGATGGAAAT+TGG - chr3_3:13948554-13948573 None:intergenic 45.0%
TTTGGTTGTTTAGGAGCTGG+TGG - chr3_3:13948582-13948601 None:intergenic 45.0%
GACTTTGGTTGTTTAGGAGC+TGG - chr3_3:13948585-13948604 None:intergenic 45.0%
TGTGGGTCCAAACCAAGATT+GGG + chr3_3:13948644-13948663 Msa0443290:intron 45.0%
!! GAGTATGGTATGCTTGGTGT+TGG - chr3_3:13948763-13948782 None:intergenic 45.0%
TATAGCGCCCCATATTCAAG+CGG + chr3_3:13948864-13948883 Msa0443290:intron 45.0%
! TTTGGCTCCGCTTGAATATG+GGG - chr3_3:13948874-13948893 None:intergenic 45.0%
! CTTTGGCTCCGCTTGAATAT+GGG - chr3_3:13948875-13948894 None:intergenic 45.0%
CTCTATGGGTGAAGAGCAAT+GGG + chr3_3:13948937-13948956 Msa0443290:intron 45.0%
GCGTCAAGCTCAACATATCA+TGG + chr3_3:13949433-13949452 Msa0443290:five_prime_UTR 45.0%
! ATCATGGCAGAATTGGTAGC+TGG + chr3_3:13949449-13949468 Msa0443290:five_prime_UTR 45.0%
! TCATGGCAGAATTGGTAGCT+GGG + chr3_3:13949450-13949469 Msa0443290:five_prime_UTR 45.0%
GCCAAAGAAAGAGTTGGGAT+TGG + chr3_3:13949856-13949875 Msa0443290:five_prime_UTR 45.0%
GGTCCTTGTGCTAGTAATGA+AGG + chr3_3:13949884-13949903 Msa0443290:five_prime_UTR 45.0%
TTACTTGCAGGCAATGACAG+TGG + chr3_3:13950010-13950029 Msa0443290:five_prime_UTR 45.0%
! ATCAGCATAGTCGGTTTAGG+AGG + chr3_3:13950049-13950068 Msa0443290:five_prime_UTR 45.0%
! TCAGCATAGTCGGTTTAGGA+GGG + chr3_3:13950050-13950069 Msa0443290:five_prime_UTR 45.0%
! ATAGTCGGTTTAGGAGGGAT+GGG + chr3_3:13950055-13950074 Msa0443290:five_prime_UTR 45.0%
CGTTGTACACAAGCTTAGCA+AGG - chr3_3:13950090-13950109 None:intergenic 45.0%
!! GCATGTGTTGGAGTTGATGT+TGG - chr3_3:13950246-13950265 None:intergenic 45.0%
TCTTCCCCATTAGCATGTGT+TGG - chr3_3:13950258-13950277 None:intergenic 45.0%
GAATGGGGATGCAGAATGTT+GGG + chr3_3:13950306-13950325 Msa0443290:five_prime_UTR 45.0%
CCCTTTAACCATGGATCTTC+TGG + chr3_3:13950343-13950362 Msa0443290:five_prime_UTR 45.0%
GGTAACTCAATCTCAGCACT+GGG - chr3_3:13950687-13950706 None:intergenic 45.0%
TGGTAACTCAATCTCAGCAC+TGG - chr3_3:13950688-13950707 None:intergenic 45.0%
ACCACAATCTCCCTTCCAAT+CGG + chr3_3:13950704-13950723 Msa0443290:five_prime_UTR 45.0%
AACAACGCTTCCGATTGGAA+GGG - chr3_3:13950717-13950736 None:intergenic 45.0%
AAACAACGCTTCCGATTGGA+AGG - chr3_3:13950718-13950737 None:intergenic 45.0%
!! TGGATTGATCAGGCTTTGGA+TGG + chr3_3:13950783-13950802 Msa0443290:five_prime_UTR 45.0%
!! GCAAATAAAGGGTGCTATGG+TGG + chr3_3:13950978-13950997 Msa0443290:five_prime_UTR 45.0%
!! ATAAAGGGTGCTATGGTGGA+AGG + chr3_3:13950982-13951001 Msa0443290:five_prime_UTR 45.0%
GAATATGACGCGTCCTTTCA+AGG - chr3_3:13951011-13951030 None:intergenic 45.0%
AGAGCCAATATGTGAGCTGA+AGG + chr3_3:13951068-13951087 Msa0443290:five_prime_UTR 45.0%
GAGCCAATATGTGAGCTGAA+GGG + chr3_3:13951069-13951088 Msa0443290:five_prime_UTR 45.0%
AGTCCCTTCAGCTCACATAT+TGG - chr3_3:13951075-13951094 None:intergenic 45.0%
ATGCAATGTGTCTGTCTTGG+AGG + chr3_3:13951692-13951711 Msa0443290:five_prime_UTR 45.0%
TGACAACCCCTTAGCCAATT+TGG - chr3_3:13951780-13951799 None:intergenic 45.0%
TGTTCTTTGTTGCCACCACT+TGG + chr3_3:13951843-13951862 Msa0443290:five_prime_UTR 45.0%
GTTCTTTGTTGCCACCACTT+GGG + chr3_3:13951844-13951863 Msa0443290:five_prime_UTR 45.0%
AGATGAACAATTGGGAGGAG+TGG + chr3_3:13951994-13952013 Msa0443290:five_prime_UTR 45.0%
AGGAGTGGTTGTGTCTTGAA+GGG + chr3_3:13952009-13952028 Msa0443290:five_prime_UTR 45.0%
! GGCAGAGCCCTTTTCAAATT+GGG - chr3_3:13952071-13952090 None:intergenic 45.0%
! AGGCAGAGCCCTTTTCAAAT+TGG - chr3_3:13952072-13952091 None:intergenic 45.0%
CAACTCCAACGCTTCAAGAA+AGG - chr3_3:13952303-13952322 None:intergenic 45.0%
!! CTTTCTTGAAGCGTTGGAGT+TGG + chr3_3:13952301-13952320 Msa0443290:five_prime_UTR 45.0%
!! TTGAAGCGTTGGAGTTGGAT+TGG + chr3_3:13952306-13952325 Msa0443290:five_prime_UTR 45.0%
GTGTAGTGAAAAAGGCAAGG+AGG - chr3_3:13952414-13952433 None:intergenic 45.0%
CTGGAATCATTTCCAATGGG+TGG + chr3_3:13952479-13952498 Msa0443290:five_prime_UTR 45.0%
GGAAGAAACTCAAGAGTTGG+TGG - chr3_3:13952665-13952684 None:intergenic 45.0%
CTCTACCCAACTCTCTTTCT+TGG + chr3_3:13952804-13952823 Msa0443290:five_prime_UTR 45.0%
CGACAACCAAGAAAGAGAGT+TGG - chr3_3:13952813-13952832 None:intergenic 45.0%
TGAAGAGGAAGAAGATGTGC+TGG - chr3_3:13953195-13953214 None:intergenic 45.0%
CGAATGTGTTTCCCCTATTC+TGG + chr3_3:13953305-13953324 Msa0443290:intron 45.0%
CCCCATAAGGACTAATGGTT+CGG - chr3_3:13953410-13953429 None:intergenic 45.0%
CCGAACCATTAGTCCTTATG+GGG + chr3_3:13953407-13953426 Msa0443290:intron 45.0%
TGGTTAATGAGCTCCCCATA+AGG - chr3_3:13953423-13953442 None:intergenic 45.0%
ACTTTGTTCCTTTGCCCCTA+AGG + chr3_3:13953844-13953863 Msa0443290:intron 45.0%
!! TTTTGAGGAACCTCTTTCCG+AGG + chr3_3:13954080-13954099 Msa0443290:intron 45.0%
GGCGACATACCAAATAACCT+CGG - chr3_3:13954100-13954119 None:intergenic 45.0%
AACTAGTCGCATCCCTTATG+TGG + chr3_3:13954355-13954374 Msa0443290:intron 45.0%
GTGTGTCTGTGCAGAAAACA+CGG + chr3_3:13954581-13954600 Msa0443290:intron 45.0%
TGTGTCTGTGCAGAAAACAC+GGG + chr3_3:13954582-13954601 Msa0443290:intron 45.0%
AATGTGCAAGATCATCTCCC+AGG - chr3_3:13955067-13955086 None:intergenic 45.0%
GTCACAGAACTTTCACAGAG+TGG - chr3_3:13955292-13955311 None:intergenic 45.0%
! TTAGGAAGCTCTAACCAGCA+GGG - chr3_3:13955350-13955369 None:intergenic 45.0%
TTGACTCTCTTTGCAGATCC+TGG + chr3_3:13955452-13955471 Msa0443290:intron 45.0%
TCTGAGCAGAGTCTATCAGT+TGG + chr3_3:13955491-13955510 Msa0443290:CDS 45.0%
TTGAGCTCTCTTTGGCATTC+TGG + chr3_3:13955543-13955562 Msa0443290:CDS 45.0%
TGAGCTCTCTTTGGCATTCT+GGG + chr3_3:13955544-13955563 Msa0443290:CDS 45.0%
!! GTGGTTGATGAAGCTCAGAT+GGG - chr3_3:13955579-13955598 None:intergenic 45.0%
!! AGTGGTTGATGAAGCTCAGA+TGG - chr3_3:13955580-13955599 None:intergenic 45.0%
!!! ATATCATATAATATATATTT+TGG + chr3_3:13947316-13947335 Msa0443290:intron 5.0%
!!! TTTTAACAAATAAATTTATT+TGG + chr3_3:13947902-13947921 Msa0443290:intron 5.0%
CTCGGACGGTACATGATGTT+TGG - chr3_3:13946577-13946596 None:intergenic 50.0%
AGAGATTCTATGTCAGGCGG+AGG + chr3_3:13948203-13948222 Msa0443290:intron 50.0%
GCCGTTGACCTAATTACTGC+TGG - chr3_3:13948399-13948418 None:intergenic 50.0%
GGTATTGTTCGCAACCACGA+TGG - chr3_3:13948561-13948580 None:intergenic 50.0%
GTGTGGGTCCAAACCAAGAT+TGG + chr3_3:13948643-13948662 Msa0443290:intron 50.0%
! GCTTTGGCTCCGCTTGAATA+TGG - chr3_3:13948876-13948895 None:intergenic 50.0%
!! AGCCAAAGCTCTCTAGAGTG+CGG + chr3_3:13948887-13948906 Msa0443290:intron 50.0%
CCATTGCTCTTCACCCATAG+AGG - chr3_3:13948939-13948958 None:intergenic 50.0%
CCTCTATGGGTGAAGAGCAA+TGG + chr3_3:13948936-13948955 Msa0443290:intron 50.0%
CCATGTTGCAATGATGCCGA+CGG + chr3_3:13948978-13948997 Msa0443290:intron 50.0%
CATGTTGCAATGATGCCGAC+GGG + chr3_3:13948979-13948998 Msa0443290:intron 50.0%
TGATGCCGACGGGCATTAAT+AGG + chr3_3:13948989-13949008 Msa0443290:intron 50.0%
GATGCCGACGGGCATTAATA+GGG + chr3_3:13948990-13949009 Msa0443290:intron 50.0%
CTCTCCCTATTAATGCCCGT+CGG - chr3_3:13948997-13949016 None:intergenic 50.0%
! CATGGCAGAATTGGTAGCTG+GGG + chr3_3:13949451-13949470 Msa0443290:five_prime_UTR 50.0%
! CATAGTCGGTTTAGGAGGGA+TGG + chr3_3:13950054-13950073 Msa0443290:five_prime_UTR 50.0%
! TAGTCGGTTTAGGAGGGATG+GGG + chr3_3:13950056-13950075 Msa0443290:five_prime_UTR 50.0%
GTACACAAGCTTAGCAAGGG+TGG - chr3_3:13950086-13950105 None:intergenic 50.0%
GGAATGGGGATGCAGAATGT+TGG + chr3_3:13950305-13950324 Msa0443290:five_prime_UTR 50.0%
CGTGACAACACGTGAAAAGG+AGG + chr3_3:13950378-13950397 Msa0443290:five_prime_UTR 50.0%
CTGCCAATTGCTTCAAGGGT+TGG - chr3_3:13950520-13950539 None:intergenic 50.0%
CAACCCTTGAAGCAATTGGC+AGG + chr3_3:13950518-13950537 Msa0443290:five_prime_UTR 50.0%
TCCGATTGGAAGGGAGATTG+TGG - chr3_3:13950708-13950727 None:intergenic 50.0%
GGCAAAACAACGCTTCCGAT+TGG - chr3_3:13950722-13950741 None:intergenic 50.0%
!! ATCAGGCTTTGGATGGCAGA+AGG + chr3_3:13950790-13950809 Msa0443290:five_prime_UTR 50.0%
! TGGTGGAAGGTAGCCTTGAA+AGG + chr3_3:13950995-13951014 Msa0443290:five_prime_UTR 50.0%
TTGCAAACGCTCTTGCTGGA+AGG + chr3_3:13951315-13951334 Msa0443290:five_prime_UTR 50.0%
GAGGAGTGGTTGTGTCTTGA+AGG + chr3_3:13952008-13952027 Msa0443290:five_prime_UTR 50.0%
ACTTTGGTCCACGGAGAACT+CGG - chr3_3:13952267-13952286 None:intergenic 50.0%
TCTGTACGATTGTCCAGAGC+TGG + chr3_3:13952460-13952479 Msa0443290:five_prime_UTR 50.0%
TTGGAAGGCAAACCACCCAT+TGG - chr3_3:13952494-13952513 None:intergenic 50.0%
!! TGATTGGTTCGAGAGAGGAG+TGG + chr3_3:13952549-13952568 Msa0443290:five_prime_UTR 50.0%
!! GATTGGTTCGAGAGAGGAGT+GGG + chr3_3:13952550-13952569 Msa0443290:five_prime_UTR 50.0%
!! ATTGGTTCGAGAGAGGAGTG+GGG + chr3_3:13952551-13952570 Msa0443290:five_prime_UTR 50.0%
! CAACAGATTCTCCTCTGGGA+AGG - chr3_3:13952642-13952661 None:intergenic 50.0%
GTGGCAACAGATTCTCCTCT+GGG - chr3_3:13952646-13952665 None:intergenic 50.0%
CTGGCAAGCTCTCAAGACTA+GGG - chr3_3:13952775-13952794 None:intergenic 50.0%
TCTGGCAAGCTCTCAAGACT+AGG - chr3_3:13952776-13952795 None:intergenic 50.0%
TCTTGAGAGCTTGCCAGAGA+AGG + chr3_3:13952778-13952797 Msa0443290:five_prime_UTR 50.0%
! GAGAAGTATGAAAAGGGGGG+AGG + chr3_3:13952857-13952876 Msa0443290:five_prime_UTR 50.0%
GCTAGCACTAATGTGGTGGT+GGG - chr3_3:13952956-13952975 None:intergenic 50.0%
TGCTAGCACTAATGTGGTGG+TGG - chr3_3:13952957-13952976 None:intergenic 50.0%
ACCACGCTCCAATTTAGCCT+GGG - chr3_3:13953118-13953137 None:intergenic 50.0%
GAGCTCCCCATAAGGACTAA+TGG - chr3_3:13953415-13953434 None:intergenic 50.0%
TTGTTCCTTTGCCCCTAAGG+TGG + chr3_3:13953847-13953866 Msa0443290:intron 50.0%
TCCTAGCACTATGTGGCGAT+GGG - chr3_3:13954407-13954426 None:intergenic 50.0%
TTCCTAGCACTATGTGGCGA+TGG - chr3_3:13954408-13954427 None:intergenic 50.0%
! TAGGAAGCTCTAACCAGCAG+GGG - chr3_3:13955349-13955368 None:intergenic 50.0%
! GTTAGGAAGCTCTAACCAGC+AGG - chr3_3:13955351-13955370 None:intergenic 50.0%
AGCAGAGTCTATCAGTTGGC+AGG + chr3_3:13955495-13955514 Msa0443290:CDS 50.0%
TACGCGAGCTGAATGGGTCT+CGG - chr3_3:13946595-13946614 None:intergenic 55.0%
! ATGCAAGGTGCTCTGTTCGC+TGG - chr3_3:13948235-13948254 None:intergenic 55.0%
!! GCCAAAGCTCTCTAGAGTGC+GGG + chr3_3:13948888-13948907 Msa0443290:intron 55.0%
GAAGAGCAATGGGTGCAGCT+TGG + chr3_3:13948947-13948966 Msa0443290:intron 55.0%
CCGTCGGCATCATTGCAACA+TGG - chr3_3:13948981-13949000 None:intergenic 55.0%
CAGGCAATGACAGTGGCAAC+CGG + chr3_3:13950017-13950036 Msa0443290:five_prime_UTR 55.0%
AGGCAATGACAGTGGCAACC+GGG + chr3_3:13950018-13950037 Msa0443290:five_prime_UTR 55.0%
GTGTGGTCTCTCAGAGCTAG+TGG + chr3_3:13951200-13951219 Msa0443290:five_prime_UTR 55.0%
!! CGGTGTACCGATTTCGCAGA+AGG - chr3_3:13952247-13952266 None:intergenic 55.0%
! GCGTTGGAGTTGGATTGGAG+TGG + chr3_3:13952311-13952330 Msa0443290:five_prime_UTR 55.0%
AAACGTGGAGTCCTTCCCAG+AGG + chr3_3:13952628-13952647 Msa0443290:five_prime_UTR 55.0%
GGTGGCAACAGATTCTCCTC+TGG - chr3_3:13952647-13952666 None:intergenic 55.0%
GCTCTCAAGACTAGGGCAGT+TGG - chr3_3:13952768-13952787 None:intergenic 55.0%
TGAGAGCTTGCCAGAGAAGG+AGG + chr3_3:13952781-13952800 Msa0443290:five_prime_UTR 55.0%
TTGGGTAGAGCCTCCTTCTC+TGG - chr3_3:13952794-13952813 None:intergenic 55.0%
CAAACGTGGGACCCGTAACT+TGG - chr3_3:13952983-13953002 None:intergenic 55.0%
CAAGTTACGGGTCCCACGTT+TGG + chr3_3:13952981-13953000 Msa0443290:five_prime_UTR 55.0%
TCCCAGGCTAAATTGGAGCG+TGG + chr3_3:13953114-13953133 Msa0443290:intron 55.0%
CACCACGCTCCAATTTAGCC+TGG - chr3_3:13953119-13953138 None:intergenic 55.0%
CCAAACCACCTTAGGGGCAA+AGG - chr3_3:13953855-13953874 None:intergenic 55.0%
CCTTTGCCCCTAAGGTGGTT+TGG + chr3_3:13953852-13953871 Msa0443290:intron 55.0%
TCCCATCGCCACATAGTGCT+AGG + chr3_3:13954403-13954422 Msa0443290:intron 55.0%
GATTGAAAGATGGCCCCTGC+TGG + chr3_3:13955333-13955352 Msa0443290:intron 55.0%
CGAGCTGAATGGGTCTCGGA+CGG - chr3_3:13946591-13946610 None:intergenic 60.0%
GACCCATTCAGCTCGCGTAC+CGG + chr3_3:13946596-13946615 Msa0443290:five_prime_UTR 60.0%
CTCCGGTACGCGAGCTGAAT+GGG - chr3_3:13946601-13946620 None:intergenic 60.0%
TCTCCGGTACGCGAGCTGAA+TGG - chr3_3:13946602-13946621 None:intergenic 60.0%
! TGAAGTTTGGGGCGCGTCTC+CGG - chr3_3:13946618-13946637 None:intergenic 60.0%
! GCCCGCACTCTAGAGAGCTT+TGG - chr3_3:13948892-13948911 None:intergenic 60.0%
TTGGCTGTCGCAGCATCTGC+AGG - chr3_3:13951591-13951610 None:intergenic 60.0%
!! AGAAAGGGGAGCGTCCCAAG+TGG - chr3_3:13951861-13951880 None:intergenic 60.0%
TCGGTACACCGAGTTCTCCG+TGG + chr3_3:13952256-13952275 Msa0443290:five_prime_UTR 60.0%
! AAAAGGGGGGAGGAGAGCGT+TGG + chr3_3:13952867-13952886 Msa0443290:five_prime_UTR 60.0%
!! AAGGGGAGCGTCCCAAGTGG+TGG - chr3_3:13951858-13951877 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 13946560 13955601 13946560 ID=Msa0443290;Name=Msa0443290
chr3_3 mRNA 13946560 13955601 13946560 ID=Msa0443290-mRNA-1;Parent=Msa0443290;Name=Msa0443290-mRNA-1;_AED=0.23;_eAED=0.25;_QI=3896|0.57|0.75|1|0.28|0.37|8|0|138
chr3_3 exon 13946560 13946721 13946560 ID=Msa0443290-mRNA-1:exon:3059;Parent=Msa0443290-mRNA-1
chr3_3 exon 13946819 13946880 13946819 ID=Msa0443290-mRNA-1:exon:3060;Parent=Msa0443290-mRNA-1
chr3_3 exon 13949417 13953025 13949417 ID=Msa0443290-mRNA-1:exon:3061;Parent=Msa0443290-mRNA-1
chr3_3 exon 13953120 13953215 13953120 ID=Msa0443290-mRNA-1:exon:3062;Parent=Msa0443290-mRNA-1
chr3_3 exon 13953654 13953742 13953654 ID=Msa0443290-mRNA-1:exon:3063;Parent=Msa0443290-mRNA-1
chr3_3 exon 13954772 13954805 13954772 ID=Msa0443290-mRNA-1:exon:3064;Parent=Msa0443290-mRNA-1
chr3_3 exon 13955006 13955132 13955006 ID=Msa0443290-mRNA-1:exon:3065;Parent=Msa0443290-mRNA-1
chr3_3 exon 13955468 13955601 13955468 ID=Msa0443290-mRNA-1:exon:3066;Parent=Msa0443290-mRNA-1
chr3_3 five_prime_UTR 13946560 13946721 13946560 ID=Msa0443290-mRNA-1:five_prime_utr;Parent=Msa0443290-mRNA-1
chr3_3 five_prime_UTR 13946819 13946880 13946819 ID=Msa0443290-mRNA-1:five_prime_utr;Parent=Msa0443290-mRNA-1
chr3_3 five_prime_UTR 13949417 13953025 13949417 ID=Msa0443290-mRNA-1:five_prime_utr;Parent=Msa0443290-mRNA-1
chr3_3 five_prime_UTR 13953120 13953182 13953120 ID=Msa0443290-mRNA-1:five_prime_utr;Parent=Msa0443290-mRNA-1
chr3_3 CDS 13953183 13953215 13953183 ID=Msa0443290-mRNA-1:cds;Parent=Msa0443290-mRNA-1
chr3_3 CDS 13953654 13953742 13953654 ID=Msa0443290-mRNA-1:cds;Parent=Msa0443290-mRNA-1
chr3_3 CDS 13954772 13954805 13954772 ID=Msa0443290-mRNA-1:cds;Parent=Msa0443290-mRNA-1
chr3_3 CDS 13955006 13955132 13955006 ID=Msa0443290-mRNA-1:cds;Parent=Msa0443290-mRNA-1
chr3_3 CDS 13955468 13955601 13955468 ID=Msa0443290-mRNA-1:cds;Parent=Msa0443290-mRNA-1
Gene Sequence

>Msa0443290

ATGGAGTTTCCAGCACATCTTCTTCCTCTTCAACATGCTGCTATAACCACATTTCCACATTTCATGGCTTCAACAAGATTTGCTTCAGGTTACAGTTTAAAGAAAGTCTTCCCTAATCAGAGGAAACAGAAAACGACACGCTTACCAAGTTTACAACAGGATGGTATAATTATCAAAACCATTGAGATAGCTTTATATCAAGTTATGAAGGAAGCCTGGGAGATGATCTTGCACATTGAAAGGCGTAATTTGTATCAAACATGCTCACTGCTTTATACCAATGATCCTGGCTATCAAGAGAAGAAATCTGAGCAGAGTCTATCAGTTGGCAGGAGAAGAAGAAGAAGACTTATTGGACTTGAGCTCTCTTTGGCATTCTGGGAGCTCAAATCCCATCTGAGCTTCATCAACCACTGA
Protein sequence

>Msa0443290

MEFPAHLLPLQHAAITTFPHFMASTRFASGYSLKKVFPNQRKQKTTRLPSLQQDGIIIKTIEIALYQVMKEAWEMILHIERRNLYQTCSLLYTNDPGYQEKKSEQSLSVGRRRRRRLIGLELSLAFWELKSHLSFINH*