AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0802470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802470 MtrunA17_Chr5g0410051 97.368 114 2 1 1 114 37 149 1.33e-75 220
Msa0802470 MtrunA17_Chr8g0375551 35.526 76 49 0 14 89 45 120 1.24e-15 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0802470 AT1G31940.1 74.257 101 24 2 12 111 47 146 9.35e-45 142
Msa0802470 AT2G35585.1 59.322 118 44 2 1 114 35 152 4.94e-41 133
Msa0802470 AT2G35585.2 75.556 45 11 0 3 47 37 81 2.01e-18 75.1

Find 44 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATATACATAACGCATATT+CGG 0.307635 5_3:-16892117 None:intergenic
CTTTGTAATTATTATACATA+TGG 0.321855 5_3:-16892138 None:intergenic
GATATACATAACGCATATTC+GGG 0.323966 5_3:-16892116 None:intergenic
CGTCTTACATTAAGAATAGA+TGG 0.331681 5_3:-16890466 None:intergenic
TATATTTGAATTTCTTCTTT+CGG 0.361752 5_3:+16892201 Msa0802470:three_prime_UTR
GAATAGATGGTTCTGGCAAC+GGG 0.396306 5_3:-16890453 None:intergenic
ATAATCAGGATGGAAGAATA+TGG 0.406041 5_3:+16891801 Msa0802470:intron
TCTGGCAACGGGCACTGAAT+TGG 0.410974 5_3:-16890442 None:intergenic
GAAGAGTCGGGCATCTAAAC+TGG 0.413008 5_3:+16891995 Msa0802470:exon
ACATTAAGAATAGATGGTTC+TGG 0.414371 5_3:-16890460 None:intergenic
CTAAAACTTCTTGAAGAGTC+GGG 0.450335 5_3:+16891983 Msa0802470:CDS
GGTTCAACGGGATGTTCAAC+TGG 0.450563 5_3:-16890403 None:intergenic
CCCCTTCCTTCATTACTGGC+AGG 0.453333 5_3:-16891862 None:intergenic
TCATTATCAAGGGGTTCAAC+GGG 0.459693 5_3:-16890415 None:intergenic
GCTGCTACTGCAACTTCTCA+TGG 0.475047 5_3:+16890355 Msa0802470:CDS
GATCTTCGCGGCCGAGGAGC+AGG 0.480306 5_3:-16891908 None:intergenic
ATCATTATCAAGGGGTTCAA+CGG 0.491883 5_3:-16890416 None:intergenic
AGAATAGATGGTTCTGGCAA+CGG 0.495108 5_3:-16890454 None:intergenic
TCTAAAACTTCTTGAAGAGT+CGG 0.502484 5_3:+16891982 Msa0802470:CDS
AGGCGACCTGCCAGTAATGA+AGG 0.511434 5_3:+16891856 Msa0802470:CDS
GAATTTCATCAACTTATATG+TGG 0.525259 5_3:+16892049 Msa0802470:three_prime_UTR
GAATTGGTCGATCATTATCA+AGG 0.530282 5_3:-16890426 None:intergenic
GAGTGAGATCTTCGCGGCCG+AGG 0.534691 5_3:-16891914 None:intergenic
TATAACATTGAGCTAAGTAA+AGG 0.535590 5_3:-16892089 None:intergenic
TCTGCTACCGTGCGTAGAAG+AGG 0.536224 5_3:+16891836 Msa0802470:CDS
AGTCTGAAGGTCCTGCTCCT+CGG 0.551322 5_3:+16891897 Msa0802470:CDS
AATTGGTCGATCATTATCAA+GGG 0.561117 5_3:-16890425 None:intergenic
CGATTAGAGTGAGATCTTCG+CGG 0.570292 5_3:-16891920 None:intergenic
AGCAGGACCTTCAGACTCAA+GGG 0.570495 5_3:-16891891 None:intergenic
GACCTGCCAGTAATGAAGGA+AGG 0.572263 5_3:+16891860 Msa0802470:CDS
ACCTGCCAGTAATGAAGGAA+GGG 0.574103 5_3:+16891861 Msa0802470:CDS
GAGCAGGACCTTCAGACTCA+AGG 0.580634 5_3:-16891892 None:intergenic
AATAAGCTCAAACTTAACAA+TGG 0.607979 5_3:-16892225 None:intergenic
GGAGGAGCCCTTGAGTCTGA+AGG 0.609978 5_3:+16891884 Msa0802470:CDS
CAGGAGCACTAAGAGATGGT+AGG 0.611171 5_3:-16891949 None:intergenic
CCTGCCAGTAATGAAGGAAG+GGG 0.615779 5_3:+16891862 Msa0802470:CDS
TGCTCAGGAGCACTAAGAGA+TGG 0.615904 5_3:-16891953 None:intergenic
AACTTCTCATGGAATTGAAG+TGG 0.616117 5_3:+16890366 Msa0802470:CDS
CATATGTATAATAATTACAA+AGG 0.633859 5_3:+16892139 Msa0802470:three_prime_UTR
CAGGTCGCCTCTTCTACGCA+CGG 0.654840 5_3:-16891843 None:intergenic
ATTGGTCGATCATTATCAAG+GGG 0.658159 5_3:-16890424 None:intergenic
TATACATAACGCATATTCGG+GGG 0.667111 5_3:-16892114 None:intergenic
CTGCCAGTAATGAAGGAAGG+GGG 0.698973 5_3:+16891863 Msa0802470:CDS
ATATACATAACGCATATTCG+GGG 0.728198 5_3:-16892115 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTACTAACAACAATATTA+TGG + chr5_3:16891014-16891033 Msa0802470:intron 15.0%
!! ATTACTAACAACAATATTAT+GGG + chr5_3:16891015-16891034 Msa0802470:intron 15.0%
!! CTTTGTAATTATTATACATA+TGG - chr5_3:16892141-16892160 None:intergenic 15.0%
!! CATATGTATAATAATTACAA+AGG + chr5_3:16892139-16892158 Msa0802470:three_prime_UTR 15.0%
!! TATATTTGAATTTCTTCTTT+CGG + chr5_3:16892201-16892220 Msa0802470:three_prime_UTR 15.0%
!! AATTACTAACAACAATATTA+TGG + chr5_3:16891014-16891033 Msa0802470:intron 15.0%
!! ATTACTAACAACAATATTAT+GGG + chr5_3:16891015-16891034 Msa0802470:intron 15.0%
!! CTTTGTAATTATTATACATA+TGG - chr5_3:16892141-16892160 None:intergenic 15.0%
!! CATATGTATAATAATTACAA+AGG + chr5_3:16892139-16892158 Msa0802470:three_prime_UTR 15.0%
!! TATATTTGAATTTCTTCTTT+CGG + chr5_3:16892201-16892220 Msa0802470:three_prime_UTR 15.0%
!!! ACTGTATTATTGTTGTTAAT+CGG + chr5_3:16890579-16890598 Msa0802470:intron 20.0%
!! TTGCAAATTAAGTATCATAT+GGG - chr5_3:16890718-16890737 None:intergenic 20.0%
!! ATTGCAAATTAAGTATCATA+TGG - chr5_3:16890719-16890738 None:intergenic 20.0%
!! TATTTGCATGCTATAATTAA+TGG + chr5_3:16890738-16890757 Msa0802470:intron 20.0%
!! CCAAAAAAAAAATAACAAAC+CGG - chr5_3:16890837-16890856 None:intergenic 20.0%
!!! ATACTTCTTATATTTTCACA+TGG - chr5_3:16890876-16890895 None:intergenic 20.0%
!! ACCACTAACATATAAAAAAA+AGG - chr5_3:16891126-16891145 None:intergenic 20.0%
!!! TTAATTGCTAATGATTCTTT+TGG + chr5_3:16891621-16891640 Msa0802470:intron 20.0%
!!! TTGTTTTTAATGTGGTATTT+TGG + chr5_3:16892020-16892039 Msa0802470:three_prime_UTR 20.0%
!!! ACTGTATTATTGTTGTTAAT+CGG + chr5_3:16890579-16890598 Msa0802470:intron 20.0%
!! TTGCAAATTAAGTATCATAT+GGG - chr5_3:16890718-16890737 None:intergenic 20.0%
!! ATTGCAAATTAAGTATCATA+TGG - chr5_3:16890719-16890738 None:intergenic 20.0%
!! TATTTGCATGCTATAATTAA+TGG + chr5_3:16890738-16890757 Msa0802470:intron 20.0%
!! CCAAAAAAAAAATAACAAAC+CGG - chr5_3:16890837-16890856 None:intergenic 20.0%
!!! ATACTTCTTATATTTTCACA+TGG - chr5_3:16890876-16890895 None:intergenic 20.0%
!! ACCACTAACATATAAAAAAA+AGG - chr5_3:16891126-16891145 None:intergenic 20.0%
!!! TTAATTGCTAATGATTCTTT+TGG + chr5_3:16891621-16891640 Msa0802470:intron 20.0%
!!! TTGTTTTTAATGTGGTATTT+TGG + chr5_3:16892020-16892039 Msa0802470:three_prime_UTR 20.0%
! CTTAATGTAAGACGAATATA+TGG + chr5_3:16890475-16890494 Msa0802470:intron 25.0%
! ACAACAATAATACAGTTCTA+CGG - chr5_3:16890575-16890594 None:intergenic 25.0%
!! TATTGTTGTTAATCGGTATA+TGG + chr5_3:16890586-16890605 Msa0802470:intron 25.0%
!! ATTGTTGTTAATCGGTATAT+GGG + chr5_3:16890587-16890606 Msa0802470:intron 25.0%
!! AATATTGGATTTTATCTTGC+CGG + chr5_3:16890682-16890701 Msa0802470:intron 25.0%
! CAAGTATTTAATCCAGAATA+AGG - chr5_3:16890767-16890786 None:intergenic 25.0%
! TTGAAATGCACAATTCAATA+AGG - chr5_3:16890807-16890826 None:intergenic 25.0%
!!! CCGGTTTGTTATTTTTTTTT+TGG + chr5_3:16890834-16890853 Msa0802470:intron 25.0%
!! TTTTGTTCTGCTTCTTAAAA+TGG + chr5_3:16891068-16891087 Msa0802470:intron 25.0%
!!! GCCTTTTTTTTATATGTTAG+TGG + chr5_3:16891122-16891141 Msa0802470:intron 25.0%
!!! ATATGTTAGTGGTTTTTTGT+TGG + chr5_3:16891133-16891152 Msa0802470:intron 25.0%
!!! TATGTTAGTGGTTTTTTGTT+GGG + chr5_3:16891134-16891153 Msa0802470:intron 25.0%
! CTATAAAATAAAACACGACT+CGG + chr5_3:16891271-16891290 Msa0802470:intron 25.0%
!!! ATTAGCTTTTGAAGATAGAA+GGG - chr5_3:16891443-16891462 None:intergenic 25.0%
! ACTATGCATATAAATAAGCA+TGG + chr5_3:16891691-16891710 Msa0802470:intron 25.0%
! AATCTTATTCGTCAATAATC+AGG + chr5_3:16891787-16891806 Msa0802470:intron 25.0%
!!! AACTGGTATTGTTTTTAATG+TGG + chr5_3:16892012-16892031 Msa0802470:exon 25.0%
! GAATTTCATCAACTTATATG+TGG + chr5_3:16892049-16892068 Msa0802470:three_prime_UTR 25.0%
! TATAACATTGAGCTAAGTAA+AGG - chr5_3:16892092-16892111 None:intergenic 25.0%
! CTTAATGTAAGACGAATATA+TGG + chr5_3:16890475-16890494 Msa0802470:intron 25.0%
! ACAACAATAATACAGTTCTA+CGG - chr5_3:16890575-16890594 None:intergenic 25.0%
!! TATTGTTGTTAATCGGTATA+TGG + chr5_3:16890586-16890605 Msa0802470:intron 25.0%
!! ATTGTTGTTAATCGGTATAT+GGG + chr5_3:16890587-16890606 Msa0802470:intron 25.0%
!! AATATTGGATTTTATCTTGC+CGG + chr5_3:16890682-16890701 Msa0802470:intron 25.0%
! CAAGTATTTAATCCAGAATA+AGG - chr5_3:16890767-16890786 None:intergenic 25.0%
! TTGAAATGCACAATTCAATA+AGG - chr5_3:16890807-16890826 None:intergenic 25.0%
!!! CCGGTTTGTTATTTTTTTTT+TGG + chr5_3:16890834-16890853 Msa0802470:intron 25.0%
!! TTTTGTTCTGCTTCTTAAAA+TGG + chr5_3:16891068-16891087 Msa0802470:intron 25.0%
!!! GCCTTTTTTTTATATGTTAG+TGG + chr5_3:16891122-16891141 Msa0802470:intron 25.0%
!!! ATATGTTAGTGGTTTTTTGT+TGG + chr5_3:16891133-16891152 Msa0802470:intron 25.0%
!!! TATGTTAGTGGTTTTTTGTT+GGG + chr5_3:16891134-16891153 Msa0802470:intron 25.0%
! CTATAAAATAAAACACGACT+CGG + chr5_3:16891271-16891290 Msa0802470:intron 25.0%
!!! ATTAGCTTTTGAAGATAGAA+GGG - chr5_3:16891443-16891462 None:intergenic 25.0%
! ACTATGCATATAAATAAGCA+TGG + chr5_3:16891691-16891710 Msa0802470:intron 25.0%
! AATCTTATTCGTCAATAATC+AGG + chr5_3:16891787-16891806 Msa0802470:intron 25.0%
!!! AACTGGTATTGTTTTTAATG+TGG + chr5_3:16892012-16892031 Msa0802470:exon 25.0%
! GAATTTCATCAACTTATATG+TGG + chr5_3:16892049-16892068 Msa0802470:three_prime_UTR 25.0%
! TATAACATTGAGCTAAGTAA+AGG - chr5_3:16892092-16892111 None:intergenic 25.0%
AATTGGTCGATCATTATCAA+GGG - chr5_3:16890428-16890447 None:intergenic 30.0%
ACATTAAGAATAGATGGTTC+TGG - chr5_3:16890463-16890482 None:intergenic 30.0%
CGTCTTACATTAAGAATAGA+TGG - chr5_3:16890469-16890488 None:intergenic 30.0%
GGCAAGATAAAATCCAATAT+TGG - chr5_3:16890683-16890702 None:intergenic 30.0%
AATTAATGGTCACCTTATTC+TGG + chr5_3:16890752-16890771 Msa0802470:intron 30.0%
!! TTCAATAAGGCTTCTTGTTT+TGG - chr5_3:16890794-16890813 None:intergenic 30.0%
TCTAACTTATCTGATTACCA+AGG - chr5_3:16890915-16890934 None:intergenic 30.0%
AACAATATTATGGGATGTTG+TGG + chr5_3:16891024-16891043 Msa0802470:intron 30.0%
ACAATATTATGGGATGTTGT+GGG + chr5_3:16891025-16891044 Msa0802470:intron 30.0%
!!! ATGTTAGTGGTTTTTTGTTG+GGG + chr5_3:16891135-16891154 Msa0802470:intron 30.0%
!!! CATTAGCTTTTGAAGATAGA+AGG - chr5_3:16891444-16891463 None:intergenic 30.0%
ATCTTCAAAAGCTAATGCAA+CGG + chr5_3:16891447-16891466 Msa0802470:intron 30.0%
GGAAGACAAGACAAAAATAA+CGG - chr5_3:16891541-16891560 None:intergenic 30.0%
GAAAAGCTTATTATTGCACT+TGG + chr5_3:16891658-16891677 Msa0802470:intron 30.0%
ATGCATATAAATAAGCATGG+TGG + chr5_3:16891694-16891713 Msa0802470:intron 30.0%
ATAGTTCACTGTGCTTAAAT+TGG - chr5_3:16891729-16891748 None:intergenic 30.0%
!!! TTGTTACCATTTAGCTTTTG+TGG + chr5_3:16891758-16891777 Msa0802470:intron 30.0%
TTATTCGTCAATAATCAGGA+TGG + chr5_3:16891791-16891810 Msa0802470:intron 30.0%
ATAATCAGGATGGAAGAATA+TGG + chr5_3:16891801-16891820 Msa0802470:intron 30.0%
!!! AGTTTTAGAAGATTATGCTC+AGG - chr5_3:16891971-16891990 None:intergenic 30.0%
! TCTAAAACTTCTTGAAGAGT+CGG + chr5_3:16891982-16892001 Msa0802470:CDS 30.0%
ATATACATAACGCATATTCG+GGG - chr5_3:16892118-16892137 None:intergenic 30.0%
GATATACATAACGCATATTC+GGG - chr5_3:16892119-16892138 None:intergenic 30.0%
GGATATACATAACGCATATT+CGG - chr5_3:16892120-16892139 None:intergenic 30.0%
AATTGGTCGATCATTATCAA+GGG - chr5_3:16890428-16890447 None:intergenic 30.0%
ACATTAAGAATAGATGGTTC+TGG - chr5_3:16890463-16890482 None:intergenic 30.0%
CGTCTTACATTAAGAATAGA+TGG - chr5_3:16890469-16890488 None:intergenic 30.0%
GGCAAGATAAAATCCAATAT+TGG - chr5_3:16890683-16890702 None:intergenic 30.0%
AATTAATGGTCACCTTATTC+TGG + chr5_3:16890752-16890771 Msa0802470:intron 30.0%
!! TTCAATAAGGCTTCTTGTTT+TGG - chr5_3:16890794-16890813 None:intergenic 30.0%
TCTAACTTATCTGATTACCA+AGG - chr5_3:16890915-16890934 None:intergenic 30.0%
AACAATATTATGGGATGTTG+TGG + chr5_3:16891024-16891043 Msa0802470:intron 30.0%
ACAATATTATGGGATGTTGT+GGG + chr5_3:16891025-16891044 Msa0802470:intron 30.0%
!!! ATGTTAGTGGTTTTTTGTTG+GGG + chr5_3:16891135-16891154 Msa0802470:intron 30.0%
!!! CATTAGCTTTTGAAGATAGA+AGG - chr5_3:16891444-16891463 None:intergenic 30.0%
ATCTTCAAAAGCTAATGCAA+CGG + chr5_3:16891447-16891466 Msa0802470:intron 30.0%
GGAAGACAAGACAAAAATAA+CGG - chr5_3:16891541-16891560 None:intergenic 30.0%
GAAAAGCTTATTATTGCACT+TGG + chr5_3:16891658-16891677 Msa0802470:intron 30.0%
ATGCATATAAATAAGCATGG+TGG + chr5_3:16891694-16891713 Msa0802470:intron 30.0%
ATAGTTCACTGTGCTTAAAT+TGG - chr5_3:16891729-16891748 None:intergenic 30.0%
!!! TTGTTACCATTTAGCTTTTG+TGG + chr5_3:16891758-16891777 Msa0802470:intron 30.0%
TTATTCGTCAATAATCAGGA+TGG + chr5_3:16891791-16891810 Msa0802470:intron 30.0%
ATAATCAGGATGGAAGAATA+TGG + chr5_3:16891801-16891820 Msa0802470:intron 30.0%
!!! AGTTTTAGAAGATTATGCTC+AGG - chr5_3:16891971-16891990 None:intergenic 30.0%
! TCTAAAACTTCTTGAAGAGT+CGG + chr5_3:16891982-16892001 Msa0802470:CDS 30.0%
ATATACATAACGCATATTCG+GGG - chr5_3:16892118-16892137 None:intergenic 30.0%
GATATACATAACGCATATTC+GGG - chr5_3:16892119-16892138 None:intergenic 30.0%
GGATATACATAACGCATATT+CGG - chr5_3:16892120-16892139 None:intergenic 30.0%
AACTTCTCATGGAATTGAAG+TGG + chr5_3:16890366-16890385 Msa0802470:CDS 35.0%
ATCATTATCAAGGGGTTCAA+CGG - chr5_3:16890419-16890438 None:intergenic 35.0%
ATTGGTCGATCATTATCAAG+GGG - chr5_3:16890427-16890446 None:intergenic 35.0%
GAATTGGTCGATCATTATCA+AGG - chr5_3:16890429-16890448 None:intergenic 35.0%
CTTTCATCTGTGTCCAATAT+TGG + chr5_3:16890667-16890686 Msa0802470:intron 35.0%
TCATATGGGTTTGAAAACAC+CGG - chr5_3:16890704-16890723 None:intergenic 35.0%
! TGATATGCTGTTTAATGCCT+TGG + chr5_3:16890895-16890914 Msa0802470:intron 35.0%
!! ATAAGTTAGAGTGTCGAGAA+GGG + chr5_3:16890925-16890944 Msa0802470:intron 35.0%
! ATTGCTCTAAGTAGTCTTGA+TGG - chr5_3:16890966-16890985 None:intergenic 35.0%
!! AATAAAACACGACTCGGTTA+TGG + chr5_3:16891277-16891296 Msa0802470:intron 35.0%
GTCTATCCTTTGATACAAGT+AGG + chr5_3:16891301-16891320 Msa0802470:intron 35.0%
TTTGATACAAGTAGGTAGCT+CGG + chr5_3:16891309-16891328 Msa0802470:intron 35.0%
! AGTGGTTATCTCAGTTTTCA+GGG - chr5_3:16891388-16891407 None:intergenic 35.0%
! TAGTGGTTATCTCAGTTTTC+AGG - chr5_3:16891389-16891408 None:intergenic 35.0%
AGTCAATGACTAACAAGTAG+TGG - chr5_3:16891406-16891425 None:intergenic 35.0%
TCTTCAAAAGCTAATGCAAC+GGG + chr5_3:16891448-16891467 Msa0802470:intron 35.0%
AATAATAGTAGATGCCTACC+TGG + chr5_3:16891500-16891519 Msa0802470:intron 35.0%
GCAAAAATACTAATCCAGGT+AGG - chr5_3:16891517-16891536 None:intergenic 35.0%
TCAGAACCACAAAAGCTAAA+TGG - chr5_3:16891767-16891786 None:intergenic 35.0%
CTAAAACTTCTTGAAGAGTC+GGG + chr5_3:16891983-16892002 Msa0802470:CDS 35.0%
TATACATAACGCATATTCGG+GGG - chr5_3:16892117-16892136 None:intergenic 35.0%
AACTTCTCATGGAATTGAAG+TGG + chr5_3:16890366-16890385 Msa0802470:CDS 35.0%
ATCATTATCAAGGGGTTCAA+CGG - chr5_3:16890419-16890438 None:intergenic 35.0%
ATTGGTCGATCATTATCAAG+GGG - chr5_3:16890427-16890446 None:intergenic 35.0%
GAATTGGTCGATCATTATCA+AGG - chr5_3:16890429-16890448 None:intergenic 35.0%
CTTTCATCTGTGTCCAATAT+TGG + chr5_3:16890667-16890686 Msa0802470:intron 35.0%
TCATATGGGTTTGAAAACAC+CGG - chr5_3:16890704-16890723 None:intergenic 35.0%
! TGATATGCTGTTTAATGCCT+TGG + chr5_3:16890895-16890914 Msa0802470:intron 35.0%
!! ATAAGTTAGAGTGTCGAGAA+GGG + chr5_3:16890925-16890944 Msa0802470:intron 35.0%
! ATTGCTCTAAGTAGTCTTGA+TGG - chr5_3:16890966-16890985 None:intergenic 35.0%
!! AATAAAACACGACTCGGTTA+TGG + chr5_3:16891277-16891296 Msa0802470:intron 35.0%
GTCTATCCTTTGATACAAGT+AGG + chr5_3:16891301-16891320 Msa0802470:intron 35.0%
TTTGATACAAGTAGGTAGCT+CGG + chr5_3:16891309-16891328 Msa0802470:intron 35.0%
! AGTGGTTATCTCAGTTTTCA+GGG - chr5_3:16891388-16891407 None:intergenic 35.0%
! TAGTGGTTATCTCAGTTTTC+AGG - chr5_3:16891389-16891408 None:intergenic 35.0%
AGTCAATGACTAACAAGTAG+TGG - chr5_3:16891406-16891425 None:intergenic 35.0%
TCTTCAAAAGCTAATGCAAC+GGG + chr5_3:16891448-16891467 Msa0802470:intron 35.0%
AATAATAGTAGATGCCTACC+TGG + chr5_3:16891500-16891519 Msa0802470:intron 35.0%
GCAAAAATACTAATCCAGGT+AGG - chr5_3:16891517-16891536 None:intergenic 35.0%
TCAGAACCACAAAAGCTAAA+TGG - chr5_3:16891767-16891786 None:intergenic 35.0%
CTAAAACTTCTTGAAGAGTC+GGG + chr5_3:16891983-16892002 Msa0802470:CDS 35.0%
TATACATAACGCATATTCGG+GGG - chr5_3:16892117-16892136 None:intergenic 35.0%
TCATTATCAAGGGGTTCAAC+GGG - chr5_3:16890418-16890437 None:intergenic 40.0%
!! AGAATAGATGGTTCTGGCAA+CGG - chr5_3:16890457-16890476 None:intergenic 40.0%
! GACAAAAAGTGTGTCAAGTC+TGG + chr5_3:16890611-16890630 Msa0802470:intron 40.0%
! TCAAGTCTGGTTGTGTTGTT+GGG + chr5_3:16890624-16890643 Msa0802470:intron 40.0%
TGTGCATTTCAAAAGCTTGC+CGG + chr5_3:16890815-16890834 Msa0802470:intron 40.0%
!! GATAAGTTAGAGTGTCGAGA+AGG + chr5_3:16890924-16890943 Msa0802470:intron 40.0%
!!! TTAGTGGTTTTTTGTTGGGG+AGG + chr5_3:16891138-16891157 Msa0802470:intron 40.0%
!!! TAGTGGTTTTTTGTTGGGGA+GGG + chr5_3:16891139-16891158 Msa0802470:intron 40.0%
GAGCTACCTACTTGTATCAA+AGG - chr5_3:16891310-16891329 None:intergenic 40.0%
GTAGCTCGGTTAGTGATTAA+GGG + chr5_3:16891323-16891342 Msa0802470:intron 40.0%
TAGTGATTAAGGGACACCAA+AGG + chr5_3:16891333-16891352 Msa0802470:intron 40.0%
CCTTCTGCTTAAAACTCCTT+TGG - chr5_3:16891352-16891371 None:intergenic 40.0%
!!! CCAAAGGAGTTTTAAGCAGA+AGG + chr5_3:16891349-16891368 Msa0802470:intron 40.0%
!!! AGTTTTAAGCAGAAGGTCCA+GGG + chr5_3:16891356-16891375 Msa0802470:intron 40.0%
!! AGTTTTCAGGGTTTAAACCC+TGG - chr5_3:16891376-16891395 None:intergenic 40.0%
AAAAGCTAATGCAACGGGTA+GGG + chr5_3:16891453-16891472 Msa0802470:intron 40.0%
CGGAGCAAAAATACTAATCC+AGG - chr5_3:16891521-16891540 None:intergenic 40.0%
CTTGTCTTCCCTACTTCTAT+TGG + chr5_3:16891551-16891570 Msa0802470:intron 40.0%
TGACTGTGCCAATAGAAGTA+GGG - chr5_3:16891562-16891581 None:intergenic 40.0%
TCGGTCCATTGTTAAGTTTG+AGG + chr5_3:16892220-16892239 Msa0802470:three_prime_UTR 40.0%
TCATTATCAAGGGGTTCAAC+GGG - chr5_3:16890418-16890437 None:intergenic 40.0%
!! AGAATAGATGGTTCTGGCAA+CGG - chr5_3:16890457-16890476 None:intergenic 40.0%
! GACAAAAAGTGTGTCAAGTC+TGG + chr5_3:16890611-16890630 Msa0802470:intron 40.0%
! TCAAGTCTGGTTGTGTTGTT+GGG + chr5_3:16890624-16890643 Msa0802470:intron 40.0%
TGTGCATTTCAAAAGCTTGC+CGG + chr5_3:16890815-16890834 Msa0802470:intron 40.0%
!! GATAAGTTAGAGTGTCGAGA+AGG + chr5_3:16890924-16890943 Msa0802470:intron 40.0%
!!! TTAGTGGTTTTTTGTTGGGG+AGG + chr5_3:16891138-16891157 Msa0802470:intron 40.0%
!!! TAGTGGTTTTTTGTTGGGGA+GGG + chr5_3:16891139-16891158 Msa0802470:intron 40.0%
GAGCTACCTACTTGTATCAA+AGG - chr5_3:16891310-16891329 None:intergenic 40.0%
GTAGCTCGGTTAGTGATTAA+GGG + chr5_3:16891323-16891342 Msa0802470:intron 40.0%
TAGTGATTAAGGGACACCAA+AGG + chr5_3:16891333-16891352 Msa0802470:intron 40.0%
CCTTCTGCTTAAAACTCCTT+TGG - chr5_3:16891352-16891371 None:intergenic 40.0%
!!! CCAAAGGAGTTTTAAGCAGA+AGG + chr5_3:16891349-16891368 Msa0802470:intron 40.0%
!!! AGTTTTAAGCAGAAGGTCCA+GGG + chr5_3:16891356-16891375 Msa0802470:intron 40.0%
!! AGTTTTCAGGGTTTAAACCC+TGG - chr5_3:16891376-16891395 None:intergenic 40.0%
AAAAGCTAATGCAACGGGTA+GGG + chr5_3:16891453-16891472 Msa0802470:intron 40.0%
CGGAGCAAAAATACTAATCC+AGG - chr5_3:16891521-16891540 None:intergenic 40.0%
CTTGTCTTCCCTACTTCTAT+TGG + chr5_3:16891551-16891570 Msa0802470:intron 40.0%
TGACTGTGCCAATAGAAGTA+GGG - chr5_3:16891562-16891581 None:intergenic 40.0%
!! GAATAGATGGTTCTGGCAAC+GGG - chr5_3:16890456-16890475 None:intergenic 45.0%
GTCAAGTCTGGTTGTGTTGT+TGG + chr5_3:16890623-16890642 Msa0802470:intron 45.0%
!!! AGTGGTTTTTTGTTGGGGAG+GGG + chr5_3:16891140-16891159 Msa0802470:intron 45.0%
AGGGGGAAATTGTTAGCAAG+AGG + chr5_3:16891158-16891177 Msa0802470:intron 45.0%
GGGGGAAATTGTTAGCAAGA+GGG + chr5_3:16891159-16891178 Msa0802470:intron 45.0%
GGTATCAAGAAGGAGGTCAA+AGG - chr5_3:16891191-16891210 None:intergenic 45.0%
!! AAGCTGAAGGGGTATCAAGA+AGG - chr5_3:16891201-16891220 None:intergenic 45.0%
GGTAGCTCGGTTAGTGATTA+AGG + chr5_3:16891322-16891341 Msa0802470:intron 45.0%
!!! GAGTTTTAAGCAGAAGGTCC+AGG + chr5_3:16891355-16891374 Msa0802470:intron 45.0%
CAAAAGCTAATGCAACGGGT+AGG + chr5_3:16891452-16891471 Msa0802470:intron 45.0%
GTGACTGTGCCAATAGAAGT+AGG - chr5_3:16891563-16891582 None:intergenic 45.0%
ACCTGCCAGTAATGAAGGAA+GGG + chr5_3:16891861-16891880 Msa0802470:CDS 45.0%
CGATTAGAGTGAGATCTTCG+CGG - chr5_3:16891923-16891942 None:intergenic 45.0%
!! GAATAGATGGTTCTGGCAAC+GGG - chr5_3:16890456-16890475 None:intergenic 45.0%
GTCAAGTCTGGTTGTGTTGT+TGG + chr5_3:16890623-16890642 Msa0802470:intron 45.0%
!!! AGTGGTTTTTTGTTGGGGAG+GGG + chr5_3:16891140-16891159 Msa0802470:intron 45.0%
AGGGGGAAATTGTTAGCAAG+AGG + chr5_3:16891158-16891177 Msa0802470:intron 45.0%
GGGGGAAATTGTTAGCAAGA+GGG + chr5_3:16891159-16891178 Msa0802470:intron 45.0%
GGTATCAAGAAGGAGGTCAA+AGG - chr5_3:16891191-16891210 None:intergenic 45.0%
!! AAGCTGAAGGGGTATCAAGA+AGG - chr5_3:16891201-16891220 None:intergenic 45.0%
GGTAGCTCGGTTAGTGATTA+AGG + chr5_3:16891322-16891341 Msa0802470:intron 45.0%
!!! GAGTTTTAAGCAGAAGGTCC+AGG + chr5_3:16891355-16891374 Msa0802470:intron 45.0%
CAAAAGCTAATGCAACGGGT+AGG + chr5_3:16891452-16891471 Msa0802470:intron 45.0%
GTGACTGTGCCAATAGAAGT+AGG - chr5_3:16891563-16891582 None:intergenic 45.0%
ACCTGCCAGTAATGAAGGAA+GGG + chr5_3:16891861-16891880 Msa0802470:CDS 45.0%
CGATTAGAGTGAGATCTTCG+CGG - chr5_3:16891923-16891942 None:intergenic 45.0%
GCTGCTACTGCAACTTCTCA+TGG + chr5_3:16890355-16890374 Msa0802470:CDS 50.0%
GGTTCAACGGGATGTTCAAC+TGG - chr5_3:16890406-16890425 None:intergenic 50.0%
!!! GTGGTTTTTTGTTGGGGAGG+GGG + chr5_3:16891141-16891160 Msa0802470:intron 50.0%
!! CTGAAGGGGTATCAAGAAGG+AGG - chr5_3:16891198-16891217 None:intergenic 50.0%
ATACCCCTTCAGCTTCCTGA+GGG + chr5_3:16891206-16891225 Msa0802470:intron 50.0%
TCCTGAGGGCTACATCTTTG+AGG + chr5_3:16891220-16891239 Msa0802470:intron 50.0%
CCTGAGGGCTACATCTTTGA+GGG + chr5_3:16891221-16891240 Msa0802470:intron 50.0%
GACCTGCCAGTAATGAAGGA+AGG + chr5_3:16891860-16891879 Msa0802470:CDS 50.0%
CCTGCCAGTAATGAAGGAAG+GGG + chr5_3:16891862-16891881 Msa0802470:CDS 50.0%
CTGCCAGTAATGAAGGAAGG+GGG + chr5_3:16891863-16891882 Msa0802470:CDS 50.0%
AGCAGGACCTTCAGACTCAA+GGG - chr5_3:16891894-16891913 None:intergenic 50.0%
!! CAGGAGCACTAAGAGATGGT+AGG - chr5_3:16891952-16891971 None:intergenic 50.0%
!! TGCTCAGGAGCACTAAGAGA+TGG - chr5_3:16891956-16891975 None:intergenic 50.0%
GAAGAGTCGGGCATCTAAAC+TGG + chr5_3:16891995-16892014 Msa0802470:exon 50.0%
GCTGCTACTGCAACTTCTCA+TGG + chr5_3:16890355-16890374 Msa0802470:CDS 50.0%
GGTTCAACGGGATGTTCAAC+TGG - chr5_3:16890406-16890425 None:intergenic 50.0%
!!! GTGGTTTTTTGTTGGGGAGG+GGG + chr5_3:16891141-16891160 Msa0802470:intron 50.0%
!! CTGAAGGGGTATCAAGAAGG+AGG - chr5_3:16891198-16891217 None:intergenic 50.0%
ATACCCCTTCAGCTTCCTGA+GGG + chr5_3:16891206-16891225 Msa0802470:intron 50.0%
TCCTGAGGGCTACATCTTTG+AGG + chr5_3:16891220-16891239 Msa0802470:intron 50.0%
CCTGAGGGCTACATCTTTGA+GGG + chr5_3:16891221-16891240 Msa0802470:intron 50.0%
GACCTGCCAGTAATGAAGGA+AGG + chr5_3:16891860-16891879 Msa0802470:CDS 50.0%
CCTGCCAGTAATGAAGGAAG+GGG + chr5_3:16891862-16891881 Msa0802470:CDS 50.0%
CTGCCAGTAATGAAGGAAGG+GGG + chr5_3:16891863-16891882 Msa0802470:CDS 50.0%
AGCAGGACCTTCAGACTCAA+GGG - chr5_3:16891894-16891913 None:intergenic 50.0%
!! CAGGAGCACTAAGAGATGGT+AGG - chr5_3:16891952-16891971 None:intergenic 50.0%
!! TGCTCAGGAGCACTAAGAGA+TGG - chr5_3:16891956-16891975 None:intergenic 50.0%
GAAGAGTCGGGCATCTAAAC+TGG + chr5_3:16891995-16892014 Msa0802470:exon 50.0%
!! TCTGGCAACGGGCACTGAAT+TGG - chr5_3:16890445-16890464 None:intergenic 55.0%
GATACCCCTTCAGCTTCCTG+AGG + chr5_3:16891205-16891224 Msa0802470:intron 55.0%
TAGCCCTCAGGAAGCTGAAG+GGG - chr5_3:16891212-16891231 None:intergenic 55.0%
GTAGCCCTCAGGAAGCTGAA+GGG - chr5_3:16891213-16891232 None:intergenic 55.0%
TGTAGCCCTCAGGAAGCTGA+AGG - chr5_3:16891214-16891233 None:intergenic 55.0%
CCCTCAAAGATGTAGCCCTC+AGG - chr5_3:16891224-16891243 None:intergenic 55.0%
GCTAATGCAACGGGTAGGGT+TGG + chr5_3:16891457-16891476 Msa0802470:intron 55.0%
TCTGCTACCGTGCGTAGAAG+AGG + chr5_3:16891836-16891855 Msa0802470:CDS 55.0%
AGGCGACCTGCCAGTAATGA+AGG + chr5_3:16891856-16891875 Msa0802470:CDS 55.0%
CCCCTTCCTTCATTACTGGC+AGG - chr5_3:16891865-16891884 None:intergenic 55.0%
CCTCCCCCTTCCTTCATTAC+TGG - chr5_3:16891869-16891888 None:intergenic 55.0%
CCAGTAATGAAGGAAGGGGG+AGG + chr5_3:16891866-16891885 Msa0802470:CDS 55.0%
GAGCAGGACCTTCAGACTCA+AGG - chr5_3:16891895-16891914 None:intergenic 55.0%
AGTCTGAAGGTCCTGCTCCT+CGG + chr5_3:16891897-16891916 Msa0802470:CDS 55.0%
!! TCTGGCAACGGGCACTGAAT+TGG - chr5_3:16890445-16890464 None:intergenic 55.0%
GATACCCCTTCAGCTTCCTG+AGG + chr5_3:16891205-16891224 Msa0802470:intron 55.0%
TAGCCCTCAGGAAGCTGAAG+GGG - chr5_3:16891212-16891231 None:intergenic 55.0%
GTAGCCCTCAGGAAGCTGAA+GGG - chr5_3:16891213-16891232 None:intergenic 55.0%
TGTAGCCCTCAGGAAGCTGA+AGG - chr5_3:16891214-16891233 None:intergenic 55.0%
CCCTCAAAGATGTAGCCCTC+AGG - chr5_3:16891224-16891243 None:intergenic 55.0%
GCTAATGCAACGGGTAGGGT+TGG + chr5_3:16891457-16891476 Msa0802470:intron 55.0%
TCTGCTACCGTGCGTAGAAG+AGG + chr5_3:16891836-16891855 Msa0802470:CDS 55.0%
AGGCGACCTGCCAGTAATGA+AGG + chr5_3:16891856-16891875 Msa0802470:CDS 55.0%
CCCCTTCCTTCATTACTGGC+AGG - chr5_3:16891865-16891884 None:intergenic 55.0%
CCTCCCCCTTCCTTCATTAC+TGG - chr5_3:16891869-16891888 None:intergenic 55.0%
CCAGTAATGAAGGAAGGGGG+AGG + chr5_3:16891866-16891885 Msa0802470:CDS 55.0%
GAGCAGGACCTTCAGACTCA+AGG - chr5_3:16891895-16891914 None:intergenic 55.0%
AGTCTGAAGGTCCTGCTCCT+CGG + chr5_3:16891897-16891916 Msa0802470:CDS 55.0%
CAGGTCGCCTCTTCTACGCA+CGG - chr5_3:16891846-16891865 None:intergenic 60.0%
GGAGGAGCCCTTGAGTCTGA+AGG + chr5_3:16891884-16891903 Msa0802470:CDS 60.0%
CAGGTCGCCTCTTCTACGCA+CGG - chr5_3:16891846-16891865 None:intergenic 60.0%
GGAGGAGCCCTTGAGTCTGA+AGG + chr5_3:16891884-16891903 Msa0802470:CDS 60.0%
GAGTGAGATCTTCGCGGCCG+AGG - chr5_3:16891917-16891936 None:intergenic 65.0%
GAGTGAGATCTTCGCGGCCG+AGG - chr5_3:16891917-16891936 None:intergenic 65.0%
GATCTTCGCGGCCGAGGAGC+AGG - chr5_3:16891911-16891930 None:intergenic 70.0%
GATCTTCGCGGCCGAGGAGC+AGG - chr5_3:16891911-16891930 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 16890340 16892241 16890340 ID=Msa0802470;Name=Msa0802470
chr5_3 mRNA 16890340 16892241 16890340 ID=Msa0802470-mRNA-1;Parent=Msa0802470;Name=Msa0802470-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|1|1|1|1|1|2|229|114
chr5_3 exon 16890340 16890480 16890340 ID=Msa0802470-mRNA-1:exon:7082;Parent=Msa0802470-mRNA-1
chr5_3 exon 16891809 16892241 16891809 ID=Msa0802470-mRNA-1:exon:7083;Parent=Msa0802470-mRNA-1
chr5_3 CDS 16890340 16890480 16890340 ID=Msa0802470-mRNA-1:cds;Parent=Msa0802470-mRNA-1
chr5_3 CDS 16891809 16892012 16891809 ID=Msa0802470-mRNA-1:cds;Parent=Msa0802470-mRNA-1
chr5_3 three_prime_UTR 16892013 16892241 16892013 ID=Msa0802470-mRNA-1:three_prime_utr;Parent=Msa0802470-mRNA-1
Gene Sequence

>Msa0802470

GCTGTAGCTGCAAGTGCTGCTACTGCAACTTCTCATGGAATTGAAGTGGCTGTTGAGTTTAAGCCAGTTGAACATCCCGTTGAACCCCTTGATAATGATCGACCAATTCAGTGCCCGTTGCCAGAACCATCTATTCTTAATGATGGAAGAATATGGAAAGAACGTGCATCTGCTACCGTGCGTAGAAGAGGCGACCTGCCAGTAATGAAGGAAGGGGGAGGAGCCCTTGAGTCTGAAGGTCCTGCTCCTCGGCCGCGAAGATCTCACTCTAATCGAATGATCCTACCATCTCTTAGTGCTCCTGAGCATAATCTTCTAAAACTTCTTGAAGAGTCGGGCATCTAA

Protein sequence

>Msa0802470

AVAASAATATSHGIEVAVEFKPVEHPVEPLDNDRPIQCPLPEPSILNDGRIWKERASATVRRRGDLPVMKEGGGALESEGPAPRPRRSHSNRMILPSLSAPEHNLLKLLEESGI*