Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664570 | KEH28611.1 | 96.267 | 375 | 9 | 4 | 1 | 375 | 1 | 370 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664570 | sp|Q9LU41|ACA9_ARATH | 72.699 | 326 | 86 | 1 | 50 | 375 | 30 | 352 | 2.58e-164 | 492 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664570 | A0A072UG00 | 96.267 | 375 | 9 | 4 | 1 | 375 | 1 | 370 | 0.0 | 728 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077450 | Msa0664570 | 0.804318 | 2.288666e-49 | -8.615850e-47 |
| Msa0078060 | Msa0664570 | 0.802303 | 5.980890e-49 | -8.615850e-47 |
| Msa0105070 | Msa0664570 | 0.804734 | 1.873421e-49 | -8.615850e-47 |
| Msa0615220 | Msa0664570 | 0.807814 | 4.206102e-50 | -8.615850e-47 |
| Msa0620790 | Msa0664570 | 0.801665 | 8.088774e-49 | -8.615850e-47 |
| Msa0626280 | Msa0664570 | 0.950607 | 1.160663e-108 | -8.615850e-47 |
| Msa0626410 | Msa0664570 | 0.818706 | 1.703904e-52 | -8.615850e-47 |
| Msa0629510 | Msa0664570 | 0.809037 | 2.306077e-50 | -8.615850e-47 |
| Msa0633700 | Msa0664570 | 0.808590 | 2.874260e-50 | -8.615850e-47 |
| Msa0658570 | Msa0664570 | 0.825880 | 3.682159e-54 | -8.615850e-47 |
| Msa0664570 | Msa0682550 | 0.806103 | 9.675074e-50 | -8.615850e-47 |
| Msa0664570 | Msa0685750 | 0.822355 | 2.476901e-53 | -8.615850e-47 |
| Msa0664570 | Msa0688070 | 0.807022 | 6.191064e-50 | -8.615850e-47 |
| Msa0664570 | Msa0689760 | 0.804644 | 1.956326e-49 | -8.615850e-47 |
| Msa0664570 | Msa0693380 | 0.808223 | 3.441618e-50 | -8.615850e-47 |
| Msa0664570 | Msa0702350 | 0.818815 | 1.609566e-52 | -8.615850e-47 |
| Msa0664570 | Msa0702570 | 0.817712 | 2.860565e-52 | -8.615850e-47 |
| Msa0664570 | Msa0702680 | 0.813719 | 2.219491e-51 | -8.615850e-47 |
| Msa0664570 | Msa0703490 | 0.807995 | 3.848648e-50 | -8.615850e-47 |
| Msa0664570 | Msa0723990 | 0.815333 | 9.753101e-52 | -8.615850e-47 |
| Msa0664570 | Msa0730270 | 0.804331 | 2.273924e-49 | -8.615850e-47 |
| Msa0664570 | Msa0751260 | 0.802468 | 5.530031e-49 | -8.615850e-47 |
| Msa0664570 | Msa0756530 | 0.807653 | 4.549681e-50 | -8.615850e-47 |
| Msa0664570 | Msa0760130 | 0.804210 | 2.409264e-49 | -8.615850e-47 |
| Msa0664570 | Msa0779330 | 0.809304 | 2.021264e-50 | -8.615850e-47 |
| Msa0664570 | Msa0828540 | 0.804944 | 1.693683e-49 | -8.615850e-47 |
| Msa0664570 | Msa0828660 | 0.810537 | 1.097060e-50 | -8.615850e-47 |
| Msa0664570 | Msa0832320 | 0.815660 | 8.251688e-52 | -8.615850e-47 |
| Msa0664570 | Msa0867890 | 0.806926 | 6.487732e-50 | -8.615850e-47 |
| Msa0664570 | Msa0870530 | 0.806327 | 8.680296e-50 | -8.615850e-47 |
| Msa0664570 | Msa0900710 | 0.800924 | 1.147048e-48 | -8.615850e-47 |
| Msa0664570 | Msa0903700 | 0.825053 | 5.779721e-54 | -8.615850e-47 |
| Msa0664570 | Msa0908050 | 0.819738 | 9.918138e-53 | -8.615850e-47 |
| Msa0664570 | Msa0909120 | 0.811162 | 8.035186e-51 | -8.615850e-47 |
| Msa0664570 | Msa1010070 | 0.805643 | 1.209098e-49 | -8.615850e-47 |
| Msa0664570 | Msa1028330 | 0.815243 | 1.021644e-51 | -8.615850e-47 |
| Msa0664570 | Msa1052360 | 0.803209 | 3.888188e-49 | -8.615850e-47 |
| Msa0664570 | Msa1082500 | 0.816931 | 4.288434e-52 | -8.615850e-47 |
| Msa0664570 | Msa1130570 | 0.820358 | 7.153873e-53 | -8.615850e-47 |
| Msa0664570 | Msa1158310 | 0.812019 | 5.232792e-51 | -8.615850e-47 |
| Msa0664570 | Msa1179940 | 0.832881 | 7.339602e-56 | -8.615850e-47 |
| Msa0664570 | Msa1179970 | 0.835939 | 1.252617e-56 | -8.615850e-47 |
| Msa0664570 | Msa1188720 | 0.814869 | 1.236883e-51 | -8.615850e-47 |
| Msa0664570 | Msa1220150 | 0.827629 | 1.407832e-54 | -8.615850e-47 |
| Msa0664570 | Msa1224480 | 0.802761 | 4.812618e-49 | -8.615850e-47 |
| Msa0664570 | Msa1224830 | 0.808945 | 2.412789e-50 | -8.615850e-47 |
| Msa0664570 | Msa1227330 | 0.802518 | 5.401639e-49 | -8.615850e-47 |
| Msa0664570 | Msa1229600 | 0.852777 | 3.694278e-61 | -8.615850e-47 |
| Msa0664570 | Msa1242650 | 0.803550 | 3.304736e-49 | -8.615850e-47 |
| Msa0664570 | Msa1267610 | 0.825087 | 5.673814e-54 | -8.615850e-47 |
| Msa0664570 | Msa1276530 | 0.809131 | 2.201621e-50 | -8.615850e-47 |
| Msa0664570 | Msa1278840 | 0.834868 | 2.337111e-56 | -8.615850e-47 |
| Msa0664570 | Msa1310210 | 0.817647 | 2.958568e-52 | -8.615850e-47 |
| Msa0664570 | Msa1313150 | 0.831401 | 1.704367e-55 | -8.615850e-47 |
| Msa0664570 | Msa1332000 | 0.847628 | 1.025429e-59 | -8.615850e-47 |
| Msa0664570 | Msa1333730 | 0.819827 | 9.468443e-53 | -8.615850e-47 |
| Msa0664570 | Msa1371310 | 0.800074 | 1.709387e-48 | -8.615850e-47 |
| Msa0664570 | Msa1376890 | 0.819090 | 1.393639e-52 | -8.615850e-47 |
| Msa0664570 | Msa1393410 | 0.851814 | 6.946303e-61 | -8.615850e-47 |
| Msa0664570 | Msa1410210 | 0.821923 | 3.119074e-53 | -8.615850e-47 |
| Msa0664570 | Msa1420250 | 0.801531 | 8.617363e-49 | -8.615850e-47 |
| Msa0664570 | Msa1423880 | 0.831923 | 1.267473e-55 | -8.615850e-47 |
| Msa0664570 | Msa1435080 | 0.803721 | 3.045097e-49 | -8.615850e-47 |
| Msa0664570 | Msa1435420 | 0.853835 | 1.837640e-61 | -8.615850e-47 |
| Msa0664570 | Msa1438970 | 0.810532 | 1.099812e-50 | -8.615850e-47 |
| Msa0664570 | Msa1439710 | 0.801547 | 8.552305e-49 | -8.615850e-47 |
| Msa0664570 | Msa1440740 | 0.828906 | 6.928259e-55 | -8.615850e-47 |
| Msa0664570 | Msa1452120 | 0.801035 | 1.088673e-48 | -8.615850e-47 |
| Msa0123300 | Msa0664570 | 0.819667 | 1.029615e-52 | -8.615850e-47 |
| Msa0133980 | Msa0664570 | -0.806574 | 7.700416e-50 | -8.615850e-47 |
| Msa0144790 | Msa0664570 | 0.811228 | 7.774784e-51 | -8.615850e-47 |
| Msa0152430 | Msa0664570 | 0.805361 | 1.385363e-49 | -8.615850e-47 |
| Msa0170140 | Msa0664570 | 0.813507 | 2.472229e-51 | -8.615850e-47 |
| Msa0191250 | Msa0664570 | 0.805096 | 1.574600e-49 | -8.615850e-47 |
| Msa0197810 | Msa0664570 | 0.818692 | 1.716285e-52 | -8.615850e-47 |
| Msa0234440 | Msa0664570 | 0.826204 | 3.083322e-54 | -8.615850e-47 |
| Msa0237310 | Msa0664570 | 0.839256 | 1.767007e-57 | -8.615850e-47 |
| Msa0379610 | Msa0664570 | 0.801088 | 1.062027e-48 | -8.615850e-47 |
| Msa0382870 | Msa0664570 | 0.817187 | 3.754923e-52 | -8.615850e-47 |
| Msa0388960 | Msa0664570 | 0.834181 | 3.477637e-56 | -8.615850e-47 |
| Msa0398050 | Msa0664570 | 0.815967 | 7.048521e-52 | -8.615850e-47 |
| Msa0399300 | Msa0664570 | 0.811732 | 6.043770e-51 | -8.615850e-47 |
| Msa0403260 | Msa0664570 | 0.814473 | 1.513035e-51 | -8.615850e-47 |
| Msa0422280 | Msa0664570 | 0.836501 | 9.020735e-57 | -8.615850e-47 |
| Msa0422500 | Msa0664570 | 0.812949 | 3.277733e-51 | -8.615850e-47 |
| Msa0432930 | Msa0664570 | 0.814386 | 1.581693e-51 | -8.615850e-47 |
| Msa0439970 | Msa0664570 | 0.841734 | 3.969712e-58 | -8.615850e-47 |
| Msa0450350 | Msa0664570 | 0.815645 | 8.315908e-52 | -8.615850e-47 |
| Msa0468800 | Msa0664570 | 0.816536 | 5.258638e-52 | -8.615850e-47 |
| Msa0476110 | Msa0664570 | 0.806016 | 1.009421e-49 | -8.615850e-47 |
| Msa0477020 | Msa0664570 | 0.810578 | 1.075146e-50 | -8.615850e-47 |
| Msa0245940 | Msa0664570 | 0.806811 | 6.860821e-50 | -8.615850e-47 |
| Msa0272730 | Msa0664570 | 0.826155 | 3.167408e-54 | -8.615850e-47 |
| Msa0274670 | Msa0664570 | 0.805450 | 1.327288e-49 | -8.615850e-47 |
| Msa0274730 | Msa0664570 | 0.841584 | 4.349640e-58 | -8.615850e-47 |
| Msa0284520 | Msa0664570 | 0.833322 | 5.701260e-56 | -8.615850e-47 |
| Msa0285450 | Msa0664570 | 0.800666 | 1.295092e-48 | -8.615850e-47 |
| Msa0305330 | Msa0664570 | 0.813735 | 2.202263e-51 | -8.615850e-47 |
| Msa0315490 | Msa0664570 | 0.802592 | 5.214549e-49 | -8.615850e-47 |
| Msa0315530 | Msa0664570 | 0.827245 | 1.739875e-54 | -8.615850e-47 |
| Msa0317740 | Msa0664570 | 0.834542 | 2.822095e-56 | -8.615850e-47 |
| Msa0344590 | Msa0664570 | 0.807980 | 3.877254e-50 | -8.615850e-47 |
| Msa0350720 | Msa0664570 | 0.814018 | 1.907729e-51 | -8.615850e-47 |
| Msa0351260 | Msa0664570 | 0.806423 | 8.287577e-50 | -8.615850e-47 |
| Msa0351380 | Msa0664570 | 0.805835 | 1.101718e-49 | -8.615850e-47 |
| Msa0484780 | Msa0664570 | 0.806206 | 9.203948e-50 | -8.615850e-47 |
| Msa0492880 | Msa0664570 | 0.821490 | 3.928150e-53 | -8.615850e-47 |
| Msa0498220 | Msa0664570 | 0.810102 | 1.361795e-50 | -8.615850e-47 |
| Msa0511250 | Msa0664570 | 0.804080 | 2.564480e-49 | -8.615850e-47 |
| Msa0512870 | Msa0664570 | 0.817127 | 3.873221e-52 | -8.615850e-47 |
| Msa0520700 | Msa0664570 | 0.808410 | 3.140704e-50 | -8.615850e-47 |
| Msa0535320 | Msa0664570 | 0.823095 | 1.665473e-53 | -8.615850e-47 |
| Msa0559500 | Msa0664570 | 0.803970 | 2.703918e-49 | -8.615850e-47 |
| Msa0567020 | Msa0664570 | 0.807522 | 4.850771e-50 | -8.615850e-47 |
| Msa0572420 | Msa0664570 | 0.800479 | 1.413519e-48 | -8.615850e-47 |
| Msa0579200 | Msa0664570 | 0.800851 | 1.187179e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664570 | MtrunA17_Chr4g0002331 | 96.267 | 375 | 9 | 4 | 1 | 375 | 1 | 370 | 0.0 | 728 |
| Msa0664570 | MtrunA17_Chr2g0334231 | 80.707 | 311 | 51 | 2 | 65 | 375 | 50 | 351 | 3.87e-168 | 480 |
| Msa0664570 | MtrunA17_Chr2g0298871 | 68.987 | 316 | 91 | 2 | 67 | 375 | 42 | 357 | 2.05e-144 | 437 |
| Msa0664570 | MtrunA17_Chr8g0382071 | 47.022 | 319 | 155 | 5 | 69 | 381 | 12 | 322 | 2.89e-77 | 258 |
| Msa0664570 | MtrunA17_Chr5g0401211 | 43.034 | 323 | 172 | 8 | 65 | 381 | 9 | 325 | 4.06e-73 | 246 |
| Msa0664570 | MtrunA17_Chr1g0173111 | 43.987 | 316 | 165 | 4 | 71 | 381 | 13 | 321 | 3.38e-72 | 244 |
| Msa0664570 | MtrunA17_Chr3g0134771 | 40.308 | 325 | 185 | 3 | 62 | 381 | 6 | 326 | 3.24e-69 | 235 |
| Msa0664570 | MtrunA17_Chr8g0340271 | 47.755 | 245 | 118 | 3 | 141 | 375 | 53 | 297 | 6.23e-69 | 226 |
| Msa0664570 | MtrunA17_Chr6g0456201 | 48.193 | 249 | 118 | 3 | 138 | 375 | 51 | 299 | 4.75e-68 | 232 |
| Msa0664570 | MtrunA17_Chr4g0020551 | 46.667 | 225 | 118 | 1 | 151 | 375 | 27 | 249 | 6.25e-63 | 216 |
| Msa0664570 | MtrunA17_Chr4g0054021 | 44.589 | 231 | 128 | 0 | 151 | 381 | 20 | 250 | 2.77e-61 | 213 |
| Msa0664570 | MtrunA17_Chr7g0260401 | 49.782 | 229 | 114 | 1 | 148 | 375 | 99 | 327 | 8.01e-60 | 209 |
| Msa0664570 | MtrunA17_Chr8g0355421 | 37.460 | 315 | 181 | 4 | 71 | 381 | 13 | 315 | 3.01e-54 | 193 |
| Msa0664570 | MtrunA17_Chr5g0447521 | 28.163 | 245 | 151 | 6 | 138 | 375 | 84 | 310 | 3.67e-21 | 95.9 |
| Msa0664570 | MtrunA17_Chr4g0005551 | 29.204 | 226 | 141 | 8 | 158 | 375 | 63 | 277 | 1.88e-19 | 90.9 |
| Msa0664570 | MtrunA17_Chr7g0263361 | 30.964 | 197 | 109 | 8 | 176 | 356 | 31 | 216 | 1.58e-15 | 78.6 |
| Msa0664570 | MtrunA17_Chr8g0346461 | 28.421 | 190 | 115 | 8 | 188 | 366 | 31 | 210 | 5.49e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664570 | AT3G21180.1 | 72.699 | 326 | 86 | 1 | 50 | 375 | 30 | 352 | 2.62e-165 | 492 |
| Msa0664570 | AT4G29900.1 | 70.206 | 339 | 95 | 3 | 38 | 375 | 6 | 339 | 1.33e-155 | 466 |
| Msa0664570 | AT4G29900.2 | 70.206 | 339 | 95 | 3 | 38 | 375 | 6 | 339 | 1.33e-155 | 466 |
| Msa0664570 | AT5G57110.1 | 64.583 | 336 | 110 | 4 | 41 | 375 | 12 | 339 | 1.02e-136 | 417 |
| Msa0664570 | AT5G57110.3 | 64.583 | 336 | 110 | 4 | 41 | 375 | 12 | 339 | 1.02e-136 | 417 |
| Msa0664570 | AT5G57110.2 | 64.583 | 336 | 110 | 4 | 41 | 375 | 12 | 339 | 1.02e-136 | 417 |
| Msa0664570 | AT4G37640.1 | 41.796 | 323 | 181 | 5 | 62 | 381 | 6 | 324 | 1.36e-75 | 253 |
| Msa0664570 | AT2G22950.1 | 42.056 | 321 | 178 | 6 | 65 | 381 | 9 | 325 | 2.16e-73 | 247 |
| Msa0664570 | AT3G57330.1 | 42.857 | 322 | 171 | 6 | 65 | 381 | 8 | 321 | 2.82e-71 | 241 |
| Msa0664570 | AT2G41560.1 | 42.633 | 319 | 171 | 4 | 68 | 381 | 10 | 321 | 5.83e-71 | 241 |
| Msa0664570 | AT1G27770.2 | 39.815 | 324 | 188 | 3 | 62 | 381 | 6 | 326 | 2.11e-67 | 230 |
| Msa0664570 | AT5G53010.2 | 36.828 | 372 | 204 | 6 | 9 | 375 | 20 | 365 | 2.53e-67 | 228 |
| Msa0664570 | AT1G27770.4 | 40.187 | 321 | 185 | 3 | 65 | 381 | 9 | 326 | 2.82e-67 | 230 |
| Msa0664570 | AT1G27770.1 | 40.187 | 321 | 185 | 3 | 65 | 381 | 9 | 326 | 2.82e-67 | 230 |
| Msa0664570 | AT5G53010.1 | 36.828 | 372 | 204 | 6 | 9 | 375 | 20 | 365 | 4.30e-66 | 227 |
| Msa0664570 | AT3G57330.2 | 43.494 | 269 | 145 | 2 | 113 | 381 | 5 | 266 | 8.53e-63 | 217 |
| Msa0664570 | AT2G41560.2 | 47.511 | 221 | 114 | 1 | 161 | 381 | 1 | 219 | 1.06e-59 | 208 |
| Msa0664570 | AT2G41560.3 | 47.511 | 221 | 114 | 1 | 161 | 381 | 1 | 219 | 1.06e-59 | 208 |
| Msa0664570 | AT2G41560.4 | 47.511 | 221 | 114 | 1 | 161 | 381 | 1 | 219 | 1.06e-59 | 208 |
| Msa0664570 | AT1G27770.3 | 45.455 | 231 | 126 | 0 | 151 | 381 | 33 | 263 | 1.02e-57 | 203 |
| Msa0664570 | AT3G63380.1 | 48.879 | 223 | 109 | 2 | 156 | 375 | 91 | 311 | 1.40e-57 | 203 |
| Msa0664570 | AT3G22910.1 | 48.673 | 226 | 115 | 1 | 151 | 375 | 81 | 306 | 2.71e-54 | 193 |
| Msa0664570 | AT1G07810.1 | 30.374 | 214 | 107 | 9 | 186 | 373 | 41 | 238 | 1.18e-15 | 79.7 |
| Msa0664570 | AT1G07670.2 | 30.374 | 214 | 107 | 9 | 186 | 373 | 41 | 238 | 1.47e-15 | 79.3 |
| Msa0664570 | AT1G07670.1 | 30.374 | 214 | 107 | 9 | 186 | 373 | 41 | 238 | 1.47e-15 | 79.3 |
| Msa0664570 | AT1G10130.1 | 28.571 | 175 | 111 | 6 | 187 | 354 | 20 | 187 | 2.30e-14 | 75.5 |
| Msa0664570 | AT4G00900.2 | 29.670 | 182 | 109 | 7 | 184 | 353 | 22 | 196 | 1.21e-13 | 73.2 |
| Msa0664570 | AT4G00900.1 | 29.670 | 182 | 109 | 7 | 184 | 353 | 22 | 196 | 1.21e-13 | 73.2 |
Find 100 sgRNAs with CRISPR-Local
Find 382 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCGTTAATTCCTTTATC+TGG | 0.229149 | 4_4:-3590206 | None:intergenic |
| CGCATTACAGCTATATTTGC+TGG | 0.255597 | 4_4:+3584614 | Msa0664570:five_prime_UTR |
| TGATATCTTCATCAGGTTAA+AGG | 0.256078 | 4_4:+3590158 | Msa0664570:intron |
| GTGGAAACTTCCTACATTAC+TGG | 0.267012 | 4_4:-3583454 | None:intergenic |
| TTACTTGTTATTGTAGTTAC+TGG | 0.280649 | 4_4:+3590828 | Msa0664570:CDS |
| ACATTGAAGCAAGTTGTTCT+AGG | 0.288036 | 4_4:-3590023 | None:intergenic |
| ATTTCTGCTTTACAGCAATA+TGG | 0.299080 | 4_4:+3590060 | Msa0664570:CDS |
| CTTGCTTTCACCAGTCATAC+TGG | 0.322761 | 4_4:-3591445 | None:intergenic |
| AAATCTATCTGAAGGAGATT+TGG | 0.340059 | 4_4:-3583603 | None:intergenic |
| CAACCTTCAGTTGGTGACTT+TGG | 0.342214 | 4_4:+3589994 | Msa0664570:CDS |
| ACCCGCTGTAAGTAAGGTTC+GGG | 0.352063 | 4_4:+3584666 | Msa0664570:five_prime_UTR |
| ACAACTTGCTTCAATGTCTA+AGG | 0.354706 | 4_4:+3590029 | Msa0664570:CDS |
| TGTTGTTGTAAAAGATGTTA+AGG | 0.390419 | 4_4:-3583484 | None:intergenic |
| GATGTTATACCCCTTAAAAT+AGG | 0.400649 | 4_4:+3591281 | Msa0664570:CDS |
| TCTATATTTGATATTGTTGT+TGG | 0.408245 | 4_4:+3591257 | Msa0664570:CDS |
| CTGCTACAATCAATATTATG+AGG | 0.410590 | 4_4:-3590415 | None:intergenic |
| CTAAAATCAAGTCCAGATAA+AGG | 0.417906 | 4_4:+3590194 | Msa0664570:CDS |
| GATATACTCTGGACTTCAAA+GGG | 0.419667 | 4_4:+3589079 | Msa0664570:CDS |
| ATTTGCTGGTTGAAAGAAGT+TGG | 0.419985 | 4_4:+3584628 | Msa0664570:five_prime_UTR |
| GGAGTAACGCATAATACTTT+AGG | 0.421840 | 4_4:+3584734 | Msa0664570:five_prime_UTR |
| TACCCGCTGTAAGTAAGGTT+CGG | 0.423649 | 4_4:+3584665 | Msa0664570:five_prime_UTR |
| ATGCGTTACTCCATCACAAT+TGG | 0.426253 | 4_4:-3584723 | None:intergenic |
| ACGGCGGTTATTGTTGTTAT+CGG | 0.427328 | 4_4:-3587174 | None:intergenic |
| AAGAAGTTGGACACATGCTT+GGG | 0.428357 | 4_4:+3584641 | Msa0664570:five_prime_UTR |
| TAGTGTTATGCAGGTTCATA+AGG | 0.432468 | 4_4:+3591538 | Msa0664570:intron |
| ACCCCTTAAAATAGGAGATC+AGG | 0.436231 | 4_4:+3591289 | Msa0664570:CDS |
| TCAGTTGGTGACTTTGGAGT+TGG | 0.441147 | 4_4:+3590000 | Msa0664570:CDS |
| GCAATATCAAAAGGATCATC+AGG | 0.442217 | 4_4:-3587251 | None:intergenic |
| TGGAGTAAAGGATGGTATGA+TGG | 0.449860 | 4_4:+3590783 | Msa0664570:CDS |
| TGAGGTGAGGGTGTAGCTGC+TGG | 0.451068 | 4_4:-3589973 | None:intergenic |
| AGTCCAGATAAAGGAATTAA+CGG | 0.452642 | 4_4:+3590203 | Msa0664570:CDS |
| AAAGAAGTTGGACACATGCT+TGG | 0.457966 | 4_4:+3584640 | Msa0664570:five_prime_UTR |
| TTAGTTTGAGCAATATCAAA+AGG | 0.465825 | 4_4:-3587260 | None:intergenic |
| TGCCGATGGTAACGGCGAAA+TGG | 0.477971 | 4_4:-3587103 | None:intergenic |
| TATACCTAGTTCACGTTCAC+CGG | 0.479547 | 4_4:-3589270 | None:intergenic |
| TATACTCAGGTTCCTGCTGA+TGG | 0.481429 | 4_4:+3591384 | Msa0664570:intron |
| AATTCGCAGGGTTGGAGTAA+AGG | 0.482854 | 4_4:+3590771 | Msa0664570:intron |
| CACTGGTACTCAATGCGTCC+AGG | 0.485789 | 4_4:+3589049 | Msa0664570:CDS |
| GGAGTAAAGGATGGTATGAT+GGG | 0.492799 | 4_4:+3590784 | Msa0664570:CDS |
| GTCGTCATCGTCATTGTGAC+CGG | 0.493115 | 4_4:-3587126 | None:intergenic |
| AGAGAAACAAAATATACAAT+TGG | 0.496631 | 4_4:+3591114 | Msa0664570:CDS |
| AGATATACTCTGGACTTCAA+AGG | 0.501389 | 4_4:+3589078 | Msa0664570:CDS |
| GTCATTGTGACCGGTGCCGA+TGG | 0.510426 | 4_4:-3587117 | None:intergenic |
| CGGTTATTGTTGTTATCGGA+AGG | 0.512659 | 4_4:-3587170 | None:intergenic |
| GCTTCCAACGGCATCGGTAA+CGG | 0.512948 | 4_4:+3587074 | Msa0664570:CDS |
| CAAATTTGCGGCAACAACAA+TGG | 0.514419 | 4_4:+3587052 | Msa0664570:exon |
| TGGGGTACCCGCTGTAAGTA+AGG | 0.514529 | 4_4:+3584660 | Msa0664570:five_prime_UTR |
| CTCATGAAACTCTTCGCCGT+TGG | 0.515662 | 4_4:+3587291 | Msa0664570:CDS |
| GCTGTAGTGTCATTGGTACT+TGG | 0.517236 | 4_4:+3590437 | Msa0664570:CDS |
| GAAACAAAATATACAATTGG+AGG | 0.526508 | 4_4:+3591117 | Msa0664570:CDS |
| TCTGGACTTCAAAGGGGAAG+AGG | 0.527980 | 4_4:+3589086 | Msa0664570:CDS |
| AGAGAAATTATGATGAGGAT+AGG | 0.528272 | 4_4:-3583524 | None:intergenic |
| GGCCATTTCGCCGTTACCAT+CGG | 0.530062 | 4_4:+3587101 | Msa0664570:CDS |
| TGTAGCAGCTGTAGTGTCAT+TGG | 0.534944 | 4_4:+3590430 | Msa0664570:CDS |
| AAAAGGAGAGTGAAGTGTAG+TGG | 0.536314 | 4_4:-3583548 | None:intergenic |
| TTGGCCGGTGAACGTGAACT+AGG | 0.536542 | 4_4:+3589266 | Msa0664570:CDS |
| TTCGCCGTTACCATCGGCAC+CGG | 0.540469 | 4_4:+3587107 | Msa0664570:CDS |
| AGTCGGTGTACCAGTAATGT+AGG | 0.542319 | 4_4:+3583444 | Msa0664570:five_prime_UTR |
| TCGTGTACAGCAAGCAGCAC+TGG | 0.547223 | 4_4:+3589032 | Msa0664570:intron |
| TGCTTTACAGCAATATGGAG+GGG | 0.548175 | 4_4:+3590065 | Msa0664570:CDS |
| CTGCTTTACAGCAATATGGA+GGG | 0.549491 | 4_4:+3590064 | Msa0664570:CDS |
| CAGAGTATATCTAAAACGCC+TGG | 0.555065 | 4_4:-3589067 | None:intergenic |
| CGTTGTTGTTGTTATCGCCA+CGG | 0.555726 | 4_4:-3587193 | None:intergenic |
| GTGATTAATACTCCATCAGC+AGG | 0.555794 | 4_4:-3591396 | None:intergenic |
| GTGACCGGTGCCGATGGTAA+CGG | 0.564190 | 4_4:-3587111 | None:intergenic |
| AACGGCATCGGTAACGGTAA+CGG | 0.564441 | 4_4:+3587080 | Msa0664570:CDS |
| TTGTTACAGGTCATGAGAAG+TGG | 0.565830 | 4_4:+3591218 | Msa0664570:intron |
| AAGATGTTAAGGCAATTTCG+TGG | 0.568825 | 4_4:-3583473 | None:intergenic |
| TCTGCTTTACAGCAATATGG+AGG | 0.569190 | 4_4:+3590063 | Msa0664570:CDS |
| CCAACTGAAGGTTGAGGTGA+GGG | 0.569857 | 4_4:-3589985 | None:intergenic |
| ATCGACGAATCCAGTATGAC+TGG | 0.572029 | 4_4:+3591435 | Msa0664570:CDS |
| CGCAGGGTTGGAGTAAAGGA+TGG | 0.575928 | 4_4:+3590775 | Msa0664570:intron |
| AGATGGTGTTGGCGTTATGA+TGG | 0.576576 | 4_4:+3591601 | Msa0664570:CDS |
| TGGTGTGTGCGCACGATAGT+CGG | 0.578154 | 4_4:+3583427 | None:intergenic |
| GTTACCGTTACCGATGCCGT+TGG | 0.582665 | 4_4:-3587078 | None:intergenic |
| AGAGATACAAATCTATCTGA+AGG | 0.591638 | 4_4:-3583611 | None:intergenic |
| CCCCGAACCTTACTTACAGC+GGG | 0.591692 | 4_4:-3584667 | None:intergenic |
| ATAAAGAAATTACTCTCCAA+CGG | 0.595581 | 4_4:-3587307 | None:intergenic |
| ACAATGGCTTCCAACGGCAT+CGG | 0.597440 | 4_4:+3587068 | Msa0664570:exon |
| GCTGATGGAGTATTAATCAC+AGG | 0.604456 | 4_4:+3591399 | Msa0664570:CDS |
| CCCTCACCTCAACCTTCAGT+TGG | 0.605261 | 4_4:+3589985 | Msa0664570:CDS |
| TTGGAACTAATACATATCCT+CGG | 0.607520 | 4_4:+3590261 | Msa0664570:CDS |
| ACCAACTGAAGGTTGAGGTG+AGG | 0.609109 | 4_4:-3589986 | None:intergenic |
| TGTTACAGGTCATGAGAAGT+GGG | 0.617088 | 4_4:+3591219 | Msa0664570:intron |
| TGCTACAATCAATATTATGA+GGG | 0.617154 | 4_4:-3590414 | None:intergenic |
| ACTCCAAAGTCACCAACTGA+AGG | 0.621244 | 4_4:-3589997 | None:intergenic |
| GCAACAACAATGGCTTCCAA+CGG | 0.624371 | 4_4:+3587062 | Msa0664570:exon |
| AAGTCACCAACTGAAGGTTG+AGG | 0.627694 | 4_4:-3589991 | None:intergenic |
| GTGGAAGAGAAATTATGATG+AGG | 0.638723 | 4_4:-3583529 | None:intergenic |
| TGCAAAGTAGCAGATGGTGT+TGG | 0.645634 | 4_4:+3591590 | Msa0664570:CDS |
| AGTAAAGGATGGTATGATGG+GGG | 0.658029 | 4_4:+3590786 | Msa0664570:CDS |
| GAGTAAAGGATGGTATGATG+GGG | 0.663516 | 4_4:+3590785 | Msa0664570:CDS |
| AGAAGTTGGACACATGCTTG+GGG | 0.685005 | 4_4:+3584642 | Msa0664570:five_prime_UTR |
| ATATACTCTGGACTTCAAAG+GGG | 0.701834 | 4_4:+3589080 | Msa0664570:CDS |
| ACCCCGAACCTTACTTACAG+CGG | 0.707827 | 4_4:-3584668 | None:intergenic |
| CGTGGCGATAACAACAACAA+CGG | 0.708584 | 4_4:+3587194 | Msa0664570:CDS |
| GATAACAACAATAACCGCCG+TGG | 0.713861 | 4_4:+3587176 | Msa0664570:CDS |
| TCTGGTTGCAAAGTAGCAGA+TGG | 0.717263 | 4_4:+3591584 | Msa0664570:CDS |
| CCCGCTGTAAGTAAGGTTCG+GGG | 0.718026 | 4_4:+3584667 | Msa0664570:five_prime_UTR |
| TGTTGTTGTTATCGCCACGG+CGG | 0.759208 | 4_4:-3587190 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTAAAAAATAAAAAA+CGG | - | chr4_4:3586740-3586759 | None:intergenic | 0.0% |
| !!! | CATAATGTAATTTTTTTTTA+AGG | - | chr4_4:3584249-3584268 | None:intergenic | 10.0% |
| !!! | TTCTATTTCATTTATATTTT+TGG | + | chr4_4:3585149-3585168 | Msa0664570:intron | 10.0% |
| !!! | TGTATTTGTATTTTTTATTA+AGG | - | chr4_4:3585924-3585943 | None:intergenic | 10.0% |
| !! | ATTAAATGATTAAAAAATGT+AGG | - | chr4_4:3586809-3586828 | None:intergenic | 10.0% |
| !! | AATTCAAAATATAAATTGAA+AGG | - | chr4_4:3589939-3589958 | None:intergenic | 10.0% |
| !!! | TTAACGTTTTTTTTTTTAAG+AGG | + | chr4_4:3584828-3584847 | Msa0664570:intron | 15.0% |
| !!! | TACATTTGAAAAGTATTTTA+AGG | + | chr4_4:3584939-3584958 | Msa0664570:intron | 15.0% |
| !! | TTATCATGTATTTGAATATT+TGG | - | chr4_4:3585260-3585279 | None:intergenic | 15.0% |
| !! | AGAAAAATTACTATCAAATT+TGG | - | chr4_4:3585629-3585648 | None:intergenic | 15.0% |
| !!! | TTTTATAAGCTTCTTTAATT+AGG | + | chr4_4:3585687-3585706 | Msa0664570:intron | 15.0% |
| !! | TTTATAAGCTTCTTTAATTA+GGG | + | chr4_4:3585688-3585707 | Msa0664570:intron | 15.0% |
| !!! | ACTTTTTCTTTCAATAAAAA+AGG | - | chr4_4:3585862-3585881 | None:intergenic | 15.0% |
| !! | TATATTATACTTAATGTATC+TGG | + | chr4_4:3586115-3586134 | Msa0664570:intron | 15.0% |
| !!! | AATTAAACATTTTAACATCA+AGG | + | chr4_4:3586442-3586461 | Msa0664570:intron | 15.0% |
| !! | TTTAGATGAAAAAAATTGAA+TGG | + | chr4_4:3586842-3586861 | Msa0664570:intron | 15.0% |
| !! | ATACAGTACTTAATTTAATT+AGG | + | chr4_4:3587521-3587540 | Msa0664570:intron | 15.0% |
| !! | TGATTAATTCATCAAAAATT+AGG | - | chr4_4:3587743-3587762 | None:intergenic | 15.0% |
| !! | TTGATTGATACATTAAAATA+TGG | - | chr4_4:3587805-3587824 | None:intergenic | 15.0% |
| !! | ATAATAATAGTAATTAACTC+AGG | - | chr4_4:3587964-3587983 | None:intergenic | 15.0% |
| !! | AAAATACTCATATCATATAA+TGG | - | chr4_4:3588504-3588523 | None:intergenic | 15.0% |
| !! | ATCATAATCAATAAAAGATA+GGG | - | chr4_4:3589322-3589341 | None:intergenic | 15.0% |
| !! | TAATAAAGATTATTCTTTCT+AGG | - | chr4_4:3589377-3589396 | None:intergenic | 15.0% |
| !! | AGTATCATAATTAATTCATT+GGG | - | chr4_4:3590335-3590354 | None:intergenic | 15.0% |
| !! | AGTTATTATAATATTATTCC+CGG | + | chr4_4:3590724-3590743 | Msa0664570:intron | 15.0% |
| !!! | TGTATAACAAATATTTTGAT+AGG | - | chr4_4:3590889-3590908 | None:intergenic | 15.0% |
| !! | AAATAAATGATAAGTACCAT+GGG | - | chr4_4:3583668-3583687 | None:intergenic | 20.0% |
| !! | TAAATAAATGATAAGTACCA+TGG | - | chr4_4:3583669-3583688 | None:intergenic | 20.0% |
| !! | TAGAATATCATTTCTCTATT+CGG | + | chr4_4:3584001-3584020 | Msa0664570:intron | 20.0% |
| !! | TTAATAATAATCCTCTTGTA+TGG | - | chr4_4:3584157-3584176 | None:intergenic | 20.0% |
| !!! | TTGAATTCATTTTGTTAAGT+TGG | + | chr4_4:3584285-3584304 | Msa0664570:intron | 20.0% |
| !!! | TTTTCCTTCAAAAAAAACTT+TGG | + | chr4_4:3584588-3584607 | Msa0664570:intron | 20.0% |
| !! | ATATGAATCATATGATCATA+TGG | - | chr4_4:3584797-3584816 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTAAGAGGAACAT+TGG | + | chr4_4:3584836-3584855 | Msa0664570:intron | 20.0% |
| !! | TTAGGAATAAAACAGTTTAA+TGG | - | chr4_4:3585394-3585413 | None:intergenic | 20.0% |
| !!! | TAGTGTAAAACTATTTTATG+TGG | + | chr4_4:3585468-3585487 | Msa0664570:intron | 20.0% |
| !!! | TTGAAATTTTGATACAATGA+AGG | - | chr4_4:3586250-3586269 | None:intergenic | 20.0% |
| !!! | ACAATAACTCTTTTCATATA+GGG | + | chr4_4:3586338-3586357 | Msa0664570:intron | 20.0% |
| !! | ACAATAAACATGTACTTATA+AGG | + | chr4_4:3586370-3586389 | Msa0664570:intron | 20.0% |
| !!! | ATCTAATTTGTTTGATTTTG+TGG | + | chr4_4:3586946-3586965 | Msa0664570:intron | 20.0% |
| !! | TAATTTCATACATTGAAATG+CGG | - | chr4_4:3587471-3587490 | None:intergenic | 20.0% |
| !! | TCAATTTCCTATTACATTAA+TGG | - | chr4_4:3588168-3588187 | None:intergenic | 20.0% |
| !!! | TGATAATGGTAGTTTATAAT+TGG | - | chr4_4:3588808-3588827 | None:intergenic | 20.0% |
| !! | ACATGCAATAAATATGATAA+TGG | - | chr4_4:3588822-3588841 | None:intergenic | 20.0% |
| !!! | GTGTTTAACTAGTTTAATTT+TGG | + | chr4_4:3588954-3588973 | Msa0664570:intron | 20.0% |
| !! | CATCATAATCAATAAAAGAT+AGG | - | chr4_4:3589323-3589342 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGGTTCTCTTTT+TGG | - | chr4_4:3589539-3589558 | None:intergenic | 20.0% |
| !! | AATGAAAAGAAAAAGAATCA+AGG | - | chr4_4:3589572-3589591 | None:intergenic | 20.0% |
| !!! | ATTCTTTTTCTTTTCATTGA+AGG | + | chr4_4:3589574-3589593 | Msa0664570:intron | 20.0% |
| !! | TCAATTAATTCTTCCATTAT+TGG | + | chr4_4:3589828-3589847 | Msa0664570:intron | 20.0% |
| !!! | TTGATTTTAGTAAACTTGAT+AGG | - | chr4_4:3590184-3590203 | None:intergenic | 20.0% |
| !! | TTGAAAAGAAAAAATGCATT+TGG | + | chr4_4:3590242-3590261 | Msa0664570:CDS | 20.0% |
| !! | CAGTATCATAATTAATTCAT+TGG | - | chr4_4:3590336-3590355 | None:intergenic | 20.0% |
| !! | CAATGAATTAATTATGATAC+TGG | + | chr4_4:3590334-3590353 | Msa0664570:intron | 20.0% |
| !! | AGAGAAACAAAATATACAAT+TGG | + | chr4_4:3591114-3591133 | Msa0664570:CDS | 20.0% |
| !! | TCTATATTTGATATTGTTGT+TGG | + | chr4_4:3591257-3591276 | Msa0664570:CDS | 20.0% |
| !!! | TTTTCATTAATTACCTCTAT+CGG | + | chr4_4:3591361-3591380 | Msa0664570:intron | 20.0% |
| ! | TGTTGTTGTAAAAGATGTTA+AGG | - | chr4_4:3583487-3583506 | None:intergenic | 25.0% |
| !! | TCACAAAAGTTGTAGATTTT+TGG | - | chr4_4:3583867-3583886 | None:intergenic | 25.0% |
| !!! | ACTTTTCCTTTGAAAATTGA+TGG | - | chr4_4:3583893-3583912 | None:intergenic | 25.0% |
| !!! | CAAGTTTTAAGTTGTTAAGT+TGG | - | chr4_4:3584320-3584339 | None:intergenic | 25.0% |
| !! | ACTAGTCTAGGTAATTTAAT+TGG | + | chr4_4:3584453-3584472 | Msa0664570:intron | 25.0% |
| !! | TATTAGTTTCCACAAATTGT+GGG | - | chr4_4:3584540-3584559 | None:intergenic | 25.0% |
| !! | ATATTAGTTTCCACAAATTG+TGG | - | chr4_4:3584541-3584560 | None:intergenic | 25.0% |
| ! | TATGATTCATATCGCAATAT+TGG | + | chr4_4:3584805-3584824 | Msa0664570:intron | 25.0% |
| !! | TTTTATCGCATTGTCATAAA+AGG | + | chr4_4:3585030-3585049 | Msa0664570:intron | 25.0% |
| ! | AACTCATAAACTAAAATGCT+AGG | + | chr4_4:3585350-3585369 | Msa0664570:intron | 25.0% |
| !!! | AATGGTGATTTTTTTATGAG+TGG | - | chr4_4:3585376-3585395 | None:intergenic | 25.0% |
| ! | ACTCATAAATATGTCTAACT+AGG | + | chr4_4:3585545-3585564 | Msa0664570:intron | 25.0% |
| !!! | AGTTGGTAAAAATTGTTACA+AGG | - | chr4_4:3585657-3585676 | None:intergenic | 25.0% |
| ! | TTCTTTAATTAGGGTATGTT+TGG | + | chr4_4:3585697-3585716 | Msa0664570:intron | 25.0% |
| !!! | AATGTCATTTTTTTCCTGTT+TGG | + | chr4_4:3585967-3585986 | Msa0664570:intron | 25.0% |
| !! | TTTGTAGTTTTTAAATTCCG+AGG | - | chr4_4:3586037-3586056 | None:intergenic | 25.0% |
| ! | TAGAAAGTTAATTCAACGAT+GGG | + | chr4_4:3586178-3586197 | Msa0664570:intron | 25.0% |
| !!! | GAAATGTTATTTTAGTGTCA+AGG | - | chr4_4:3586311-3586330 | None:intergenic | 25.0% |
| !! | CACAATAACTCTTTTCATAT+AGG | + | chr4_4:3586337-3586356 | Msa0664570:intron | 25.0% |
| ! | ACTAACAAAATGCATAATCA+GGG | + | chr4_4:3586474-3586493 | Msa0664570:intron | 25.0% |
| ! | TGTAGGAAAATGTTTATTGA+TGG | - | chr4_4:3586792-3586811 | None:intergenic | 25.0% |
| ! | TGAAAAAAATTGAATGGAGA+TGG | + | chr4_4:3586848-3586867 | Msa0664570:intron | 25.0% |
| ! | AAGAAATGAAAACACAATGA+TGG | - | chr4_4:3587014-3587033 | None:intergenic | 25.0% |
| !! | TTAGTTTGAGCAATATCAAA+AGG | - | chr4_4:3587263-3587282 | None:intergenic | 25.0% |
| ! | ATAAAGAAATTACTCTCCAA+CGG | - | chr4_4:3587310-3587329 | None:intergenic | 25.0% |
| ! | ATGTACTTTCTATATTGAGA+TGG | + | chr4_4:3587659-3587678 | Msa0664570:intron | 25.0% |
| ! | AATACTACCAATTACACTAA+CGG | - | chr4_4:3587687-3587706 | None:intergenic | 25.0% |
| ! | AATATGGTTAAAGAAAAAGC+AGG | - | chr4_4:3587789-3587808 | None:intergenic | 25.0% |
| ! | TGATTGATGCATCAAAATTT+AGG | - | chr4_4:3588019-3588038 | None:intergenic | 25.0% |
| ! | AATGCAGATACATTAAAATG+CGG | - | chr4_4:3588072-3588091 | None:intergenic | 25.0% |
| !! | ATTGATGCATAAAAAAGTAC+TGG | - | chr4_4:3588100-3588119 | None:intergenic | 25.0% |
| ! | GATGTTTCCATTAATGTAAT+AGG | + | chr4_4:3588158-3588177 | Msa0664570:intron | 25.0% |
| ! | TATACAAAATAGAGAGATGT+TGG | + | chr4_4:3588301-3588320 | Msa0664570:intron | 25.0% |
| ! | AGATGAATGTAATAAAGGAT+AGG | + | chr4_4:3588360-3588379 | Msa0664570:intron | 25.0% |
| !! | ATTTGAGACTTGATTTGATT+TGG | + | chr4_4:3588673-3588692 | Msa0664570:intron | 25.0% |
| !!! | TAACTAGTTTAATTTTGGTG+AGG | + | chr4_4:3588959-3588978 | Msa0664570:intron | 25.0% |
| !! | TTGTTGATTAGAATAGTCAA+AGG | - | chr4_4:3589212-3589231 | None:intergenic | 25.0% |
| ! | CAACAATTAATTGTTCTATC+AGG | + | chr4_4:3589226-3589245 | Msa0664570:intron | 25.0% |
| ! | AGGTATACTTACTTTGATAT+CGG | + | chr4_4:3589286-3589305 | Msa0664570:intron | 25.0% |
| ! | TTATGTGATACAACTTACAA+GGG | - | chr4_4:3589415-3589434 | None:intergenic | 25.0% |
| ! | ATTATGTGATACAACTTACA+AGG | - | chr4_4:3589416-3589435 | None:intergenic | 25.0% |
| ! | TTTAACCATTACTAGTAATC+TGG | - | chr4_4:3589627-3589646 | None:intergenic | 25.0% |
| ! | CTAAATTGCATATTTGCTTA+AGG | - | chr4_4:3589710-3589729 | None:intergenic | 25.0% |
| ! | AAATTTGTACAAGCCAATAA+TGG | - | chr4_4:3589844-3589863 | None:intergenic | 25.0% |
| !! | AATTTGATGATATCTTCATC+AGG | + | chr4_4:3590151-3590170 | Msa0664570:intron | 25.0% |
| !!! | TTCTTTTTGATTGTTTACAG+AGG | + | chr4_4:3590363-3590382 | Msa0664570:intron | 25.0% |
| !! | ATTGTTTACAGAGGTTTTTA+TGG | + | chr4_4:3590372-3590391 | Msa0664570:intron | 25.0% |
| !! | TTGTTTACAGAGGTTTTTAT+GGG | + | chr4_4:3590373-3590392 | Msa0664570:intron | 25.0% |
| ! | TGCTACAATCAATATTATGA+GGG | - | chr4_4:3590417-3590436 | None:intergenic | 25.0% |
| !! | CTTGTCATTTCATTTGATAT+TGG | + | chr4_4:3590671-3590690 | Msa0664570:intron | 25.0% |
| ! | CATTTGATATTGGATAAGTT+TGG | + | chr4_4:3590681-3590700 | Msa0664570:intron | 25.0% |
| ! | TATTATAATATTATTCCCGG+TGG | + | chr4_4:3590727-3590746 | Msa0664570:intron | 25.0% |
| !!! | TTACTTGTTATTGTAGTTAC+TGG | + | chr4_4:3590828-3590847 | Msa0664570:CDS | 25.0% |
| !!! | TATTTGTTATACATGTGTAG+AGG | + | chr4_4:3590896-3590915 | Msa0664570:intron | 25.0% |
| ! | AAAAATCGAAGAACACAAAT+AGG | - | chr4_4:3590963-3590982 | None:intergenic | 25.0% |
| ! | TATTGATACAGTTTGCATTA+GGG | - | chr4_4:3590998-3591017 | None:intergenic | 25.0% |
| ! | ATATTGATACAGTTTGCATT+AGG | - | chr4_4:3590999-3591018 | None:intergenic | 25.0% |
| ! | GAAACAAAATATACAATTGG+AGG | + | chr4_4:3591117-3591136 | Msa0664570:CDS | 25.0% |
| !!! | ATATACTTTGAACTTGTTAC+AGG | + | chr4_4:3591205-3591224 | Msa0664570:intron | 25.0% |
| ! | CGTTAAATTTCGTAAATAGA+GGG | - | chr4_4:3591489-3591508 | None:intergenic | 25.0% |
| ! | CCTCTATTTACGAAATTTAA+CGG | + | chr4_4:3591487-3591506 | Msa0664570:intron | 25.0% |
| ! | TAAAGTAAATAGTGTTATGC+AGG | + | chr4_4:3591529-3591548 | Msa0664570:intron | 25.0% |
| AGAGAAATTATGATGAGGAT+AGG | - | chr4_4:3583527-3583546 | None:intergenic | 30.0% | |
| AGATGAGACGAAGAAAAAAA+AGG | - | chr4_4:3583568-3583587 | None:intergenic | 30.0% | |
| AAATCTATCTGAAGGAGATT+TGG | - | chr4_4:3583606-3583625 | None:intergenic | 30.0% | |
| AGAGATACAAATCTATCTGA+AGG | - | chr4_4:3583614-3583633 | None:intergenic | 30.0% | |
| !! | ACCTTAGCCTTATTGTTATT+TGG | + | chr4_4:3583819-3583838 | Msa0664570:intron | 30.0% |
| TCCAAATAACAATAAGGCTA+AGG | - | chr4_4:3583823-3583842 | None:intergenic | 30.0% | |
| TGCTCTTCCAAATAACAATA+AGG | - | chr4_4:3583829-3583848 | None:intergenic | 30.0% | |
| ! | TGACAACCATCAATTTTCAA+AGG | + | chr4_4:3583884-3583903 | Msa0664570:intron | 30.0% |
| CTTTCGTGATGTATCTATTA+CGG | - | chr4_4:3584130-3584149 | None:intergenic | 30.0% | |
| TATGTCATCTACTCTTTAGT+CGG | + | chr4_4:3584341-3584360 | Msa0664570:intron | 30.0% | |
| CATAAAACACTTTGTAAGTC+GGG | - | chr4_4:3584398-3584417 | None:intergenic | 30.0% | |
| GCATAAAACACTTTGTAAGT+CGG | - | chr4_4:3584399-3584418 | None:intergenic | 30.0% | |
| !!! | TTTTTTTCCTTCACTAGTCT+AGG | + | chr4_4:3584441-3584460 | Msa0664570:intron | 30.0% |
| TAAATTACCTAGACTAGTGA+AGG | - | chr4_4:3584451-3584470 | None:intergenic | 30.0% | |
| TAATAACCATGTTGAGGTAA+AGG | + | chr4_4:3584489-3584508 | Msa0664570:intron | 30.0% | |
| GATCATATGGTAAATAATGC+TGG | - | chr4_4:3584784-3584803 | None:intergenic | 30.0% | |
| GTACATACAACTAATGAGTT+TGG | + | chr4_4:3584995-3585014 | Msa0664570:intron | 30.0% | |
| !! | ACTGTTTTATTCCTAAATGC+TGG | + | chr4_4:3585398-3585417 | Msa0664570:intron | 30.0% |
| AAACTTTGTAACCAGCATTT+AGG | - | chr4_4:3585412-3585431 | None:intergenic | 30.0% | |
| ! | CTAAGTTTTCTAGACAGTTT+AGG | - | chr4_4:3585888-3585907 | None:intergenic | 30.0% |
| !!! | CATTTTTTTCCTGTTTGGAT+TGG | + | chr4_4:3585972-3585991 | Msa0664570:intron | 30.0% |
| AATTATAAGCCAATCCAAAC+AGG | - | chr4_4:3585984-3586003 | None:intergenic | 30.0% | |
| !! | TGTTTGGATTGGCTTATAAT+TGG | + | chr4_4:3585983-3586002 | Msa0664570:intron | 30.0% |
| CTAGAAAGTTAATTCAACGA+TGG | + | chr4_4:3586177-3586196 | Msa0664570:intron | 30.0% | |
| TGACTAATCATACACATTCA+GGG | - | chr4_4:3586220-3586239 | None:intergenic | 30.0% | |
| ATGACTAATCATACACATTC+AGG | - | chr4_4:3586221-3586240 | None:intergenic | 30.0% | |
| ACTAACATAATGCACAATCA+AGG | - | chr4_4:3586279-3586298 | None:intergenic | 30.0% | |
| GACTAACAAAATGCATAATC+AGG | + | chr4_4:3586473-3586492 | Msa0664570:intron | 30.0% | |
| TGTCATGATCATCATTGAAT+GGG | - | chr4_4:3586576-3586595 | None:intergenic | 30.0% | |
| ATGTCATGATCATCATTGAA+TGG | - | chr4_4:3586577-3586596 | None:intergenic | 30.0% | |
| !! | CTTTGTTTGTTAACTTTTGG+TGG | - | chr4_4:3586658-3586677 | None:intergenic | 30.0% |
| AAAAATTGAATGGAGATGGT+AGG | + | chr4_4:3586852-3586871 | Msa0664570:intron | 30.0% | |
| ! | AACAATTTGAGATCAATGTG+TGG | - | chr4_4:3586892-3586911 | None:intergenic | 30.0% |
| ATGAAAACACAATGATGGTA+AGG | - | chr4_4:3587009-3587028 | None:intergenic | 30.0% | |
| !! | GTAACCGTTTTTCAAATTTG+CGG | + | chr4_4:3587040-3587059 | Msa0664570:intron | 30.0% |
| GTGTGAGATGAATGTAATAA+AGG | + | chr4_4:3588355-3588374 | Msa0664570:intron | 30.0% | |
| ! | GCATGTACAAAAATGCATTT+TGG | + | chr4_4:3588836-3588855 | Msa0664570:intron | 30.0% |
| AAACTAGTTAAACACAACAC+AGG | - | chr4_4:3588949-3588968 | None:intergenic | 30.0% | |
| TTGATTAGAATAGTCAAAGG+TGG | - | chr4_4:3589209-3589228 | None:intergenic | 30.0% | |
| ATTGCAACGAATACAAGATT+TGG | - | chr4_4:3589441-3589460 | None:intergenic | 30.0% | |
| TGAGTTTGTAGCATAAACAT+TGG | + | chr4_4:3589463-3589482 | Msa0664570:intron | 30.0% | |
| !!! | GGTTGTGCTTACTTTTTTTT+TGG | - | chr4_4:3589551-3589570 | None:intergenic | 30.0% |
| ! | ATCATCTGATTTTCTCTATG+TGG | + | chr4_4:3589657-3589676 | Msa0664570:intron | 30.0% |
| !! | GTTTTGTAGTTTGTATTCTG+CGG | + | chr4_4:3589781-3589800 | Msa0664570:intron | 30.0% |
| TTTGTAAATCAAACTGCATG+TGG | + | chr4_4:3589861-3589880 | Msa0664570:intron | 30.0% | |
| ACTGAATCATTATCTACATG+TGG | + | chr4_4:3589898-3589917 | Msa0664570:intron | 30.0% | |
| ATTTCTGCTTTACAGCAATA+TGG | + | chr4_4:3590060-3590079 | Msa0664570:CDS | 30.0% | |
| TGATATCTTCATCAGGTTAA+AGG | + | chr4_4:3590158-3590177 | Msa0664570:intron | 30.0% | |
| CTAAAATCAAGTCCAGATAA+AGG | + | chr4_4:3590194-3590213 | Msa0664570:CDS | 30.0% | |
| AGTCCAGATAAAGGAATTAA+CGG | + | chr4_4:3590203-3590222 | Msa0664570:CDS | 30.0% | |
| TTGGAACTAATACATATCCT+CGG | + | chr4_4:3590261-3590280 | Msa0664570:CDS | 30.0% | |
| AATACATATCCTCGGAAAAA+AGG | + | chr4_4:3590269-3590288 | Msa0664570:CDS | 30.0% | |
| ATACATATCCTCGGAAAAAA+GGG | + | chr4_4:3590270-3590289 | Msa0664570:CDS | 30.0% | |
| CTGCTACAATCAATATTATG+AGG | - | chr4_4:3590418-3590437 | None:intergenic | 30.0% | |
| GAGTGAATATTGAGCTTAAA+TGG | - | chr4_4:3590523-3590542 | None:intergenic | 30.0% | |
| AGTCATATAAAGAGAAGAGA+GGG | - | chr4_4:3590612-3590631 | None:intergenic | 30.0% | |
| !! | TTTATATGACTGTTTCTGCA+TGG | + | chr4_4:3590621-3590640 | Msa0664570:intron | 30.0% |
| AAGAACACAAATAGGTCAAT+GGG | - | chr4_4:3590955-3590974 | None:intergenic | 30.0% | |
| !! | ACACATAACTTGCTAATCAT+TGG | + | chr4_4:3591159-3591178 | Msa0664570:intron | 30.0% |
| !! | CACATAACTTGCTAATCATT+GGG | + | chr4_4:3591160-3591179 | Msa0664570:intron | 30.0% |
| GATGTTATACCCCTTAAAAT+AGG | + | chr4_4:3591281-3591300 | Msa0664570:CDS | 30.0% | |
| AGAAAACACATTTACTTTCC+TGG | - | chr4_4:3591341-3591360 | None:intergenic | 30.0% | |
| CCGTTAAATTTCGTAAATAG+AGG | - | chr4_4:3591490-3591509 | None:intergenic | 30.0% | |
| TTGCAACCAGACATAAAAAA+GGG | - | chr4_4:3591575-3591594 | None:intergenic | 30.0% | |
| TTTGCAACCAGACATAAAAA+AGG | - | chr4_4:3591576-3591595 | None:intergenic | 30.0% | |
| AAGATGTTAAGGCAATTTCG+TGG | - | chr4_4:3583476-3583495 | None:intergenic | 35.0% | |
| GTGGAAGAGAAATTATGATG+AGG | - | chr4_4:3583532-3583551 | None:intergenic | 35.0% | |
| CCATGGGAAAAATAACATGT+GGG | - | chr4_4:3583652-3583671 | None:intergenic | 35.0% | |
| ACCATGGGAAAAATAACATG+TGG | - | chr4_4:3583653-3583672 | None:intergenic | 35.0% | |
| TATCAGAAGGAAACATAGCT+TGG | - | chr4_4:3583779-3583798 | None:intergenic | 35.0% | |
| ACATCACTATCAGTATCAGA+AGG | - | chr4_4:3583792-3583811 | None:intergenic | 35.0% | |
| AGGAAAAGTAGATAGTGACA+CGG | + | chr4_4:3583904-3583923 | Msa0664570:intron | 35.0% | |
| !! | ACTTTTTCTCTCTATTGCCT+TGG | - | chr4_4:3583933-3583952 | None:intergenic | 35.0% |
| ATTCGGAAAGTTGCTTAAGA+TGG | + | chr4_4:3584018-3584037 | Msa0664570:intron | 35.0% | |
| ACATTTGTCCAACATGATCT+GGG | - | chr4_4:3584102-3584121 | None:intergenic | 35.0% | |
| AACATTTGTCCAACATGATC+TGG | - | chr4_4:3584103-3584122 | None:intergenic | 35.0% | |
| CCTCAACATGGTTATTAGTT+TGG | - | chr4_4:3584486-3584505 | None:intergenic | 35.0% | |
| CCAAACTAATAACCATGTTG+AGG | + | chr4_4:3584483-3584502 | Msa0664570:intron | 35.0% | |
| TTTGATCCTTTACCTCAACA+TGG | - | chr4_4:3584498-3584517 | None:intergenic | 35.0% | |
| TGTTGAGGTAAAGGATCAAA+TGG | + | chr4_4:3584498-3584517 | Msa0664570:intron | 35.0% | |
| !!! | GCTGCCAAAGTTTTTTTTGA+AGG | - | chr4_4:3584595-3584614 | None:intergenic | 35.0% |
| ! | ATTTGCTGGTTGAAAGAAGT+TGG | + | chr4_4:3584628-3584647 | Msa0664570:five_prime_UTR | 35.0% |
| GGAGTAACGCATAATACTTT+AGG | + | chr4_4:3584734-3584753 | Msa0664570:five_prime_UTR | 35.0% | |
| TGTCTAACTAGGACTCTATT+TGG | + | chr4_4:3585556-3585575 | Msa0664570:intron | 35.0% | |
| AAAGATAACTTCTTGTCTGC+CGG | + | chr4_4:3586055-3586074 | Msa0664570:intron | 35.0% | |
| !!! | TGTTTTTTTCTCTAGACGTC+CGG | - | chr4_4:3586077-3586096 | None:intergenic | 35.0% |
| ATTCCAATAGAGCGATAATG+AGG | + | chr4_4:3586617-3586636 | Msa0664570:intron | 35.0% | |
| !!! | GCGCTTTGTTTGTTAACTTT+TGG | - | chr4_4:3586661-3586680 | None:intergenic | 35.0% |
| GTTGCCGCAAATTTGAAAAA+CGG | - | chr4_4:3587047-3587066 | None:intergenic | 35.0% | |
| GCAATATCAAAAGGATCATC+AGG | - | chr4_4:3587254-3587273 | None:intergenic | 35.0% | |
| GATGCATTCTTTAACGTAAG+TGG | + | chr4_4:3587860-3587879 | Msa0664570:intron | 35.0% | |
| AGATGTTGACCTAATATGAG+AGG | - | chr4_4:3588281-3588300 | None:intergenic | 35.0% | |
| GTTGATCAATGATCAACTGT+CGG | - | chr4_4:3588572-3588591 | None:intergenic | 35.0% | |
| !! | TGATGAGCACTGAATTCAAA+TGG | + | chr4_4:3588711-3588730 | Msa0664570:intron | 35.0% |
| GAGTATTAAATGCAGTGCTT+GGG | - | chr4_4:3588864-3588883 | None:intergenic | 35.0% | |
| TGAGTATTAAATGCAGTGCT+TGG | - | chr4_4:3588865-3588884 | None:intergenic | 35.0% | |
| TATCCAAATCATCAGTGTGT+CGG | + | chr4_4:3588904-3588923 | Msa0664570:intron | 35.0% | |
| ! | GCTTGGTTACATATTTTCCA+AGG | + | chr4_4:3588989-3589008 | Msa0664570:intron | 35.0% |
| AAACTTCAGTTTAGATGCCT+TGG | - | chr4_4:3589009-3589028 | None:intergenic | 35.0% | |
| AGATATACTCTGGACTTCAA+AGG | + | chr4_4:3589078-3589097 | Msa0664570:CDS | 35.0% | |
| GATATACTCTGGACTTCAAA+GGG | + | chr4_4:3589079-3589098 | Msa0664570:CDS | 35.0% | |
| ATATACTCTGGACTTCAAAG+GGG | + | chr4_4:3589080-3589099 | Msa0664570:CDS | 35.0% | |
| GTGGTTAGAAACATTCAATC+AGG | - | chr4_4:3589190-3589209 | None:intergenic | 35.0% | |
| TTGTAGCATAAACATTGGAG+AGG | + | chr4_4:3589468-3589487 | Msa0664570:intron | 35.0% | |
| TTAAGAGATGTGAACCAGAA+TGG | + | chr4_4:3589491-3589510 | Msa0664570:intron | 35.0% | |
| TAGTGCCAGATTACTAGTAA+TGG | + | chr4_4:3589619-3589638 | Msa0664570:intron | 35.0% | |
| TGCAATTTAGAGATATGAGC+TGG | + | chr4_4:3589720-3589739 | Msa0664570:intron | 35.0% | |
| ACATTGAAGCAAGTTGTTCT+AGG | - | chr4_4:3590026-3590045 | None:intergenic | 35.0% | |
| ! | ACAACTTGCTTCAATGTCTA+AGG | + | chr4_4:3590029-3590048 | Msa0664570:CDS | 35.0% |
| TCTCCGTTAATTCCTTTATC+TGG | - | chr4_4:3590209-3590228 | None:intergenic | 35.0% | |
| GAAAAAAGGGAGAAGTTTCT+GGG | + | chr4_4:3590283-3590302 | Msa0664570:CDS | 35.0% | |
| ! | TTTACAGAGGTTTTTATGGG+AGG | + | chr4_4:3590376-3590395 | Msa0664570:intron | 35.0% |
| GGTACTTGGAATAAAAACAG+AGG | + | chr4_4:3590451-3590470 | Msa0664570:CDS | 35.0% | |
| CAGTCATATAAAGAGAAGAG+AGG | - | chr4_4:3590613-3590632 | None:intergenic | 35.0% | |
| TGAAAGAAAGGATAAACCAC+CGG | - | chr4_4:3590746-3590765 | None:intergenic | 35.0% | |
| GCGAATTACAAGTGAAAGAA+AGG | - | chr4_4:3590758-3590777 | None:intergenic | 35.0% | |
| TTCTTTCACTTGTAATTCGC+AGG | + | chr4_4:3590758-3590777 | Msa0664570:intron | 35.0% | |
| TCTTTCACTTGTAATTCGCA+GGG | + | chr4_4:3590759-3590778 | Msa0664570:intron | 35.0% | |
| TGTTATACATGTGTAGAGGA+TGG | + | chr4_4:3590900-3590919 | Msa0664570:intron | 35.0% | |
| GAAGAACACAAATAGGTCAA+TGG | - | chr4_4:3590956-3590975 | None:intergenic | 35.0% | |
| !! | ACCTGATCTCCTATTTTAAG+GGG | - | chr4_4:3591293-3591312 | None:intergenic | 35.0% |
| !! | CACCTGATCTCCTATTTTAA+GGG | - | chr4_4:3591294-3591313 | None:intergenic | 35.0% |
| ! | TCACCTGATCTCCTATTTTA+AGG | - | chr4_4:3591295-3591314 | None:intergenic | 35.0% |
| !!! | CATGATATTTTGAGTTTGCC+AGG | + | chr4_4:3591320-3591339 | Msa0664570:intron | 35.0% |
| TAGTGTTATGCAGGTTCATA+AGG | + | chr4_4:3591538-3591557 | Msa0664570:intron | 35.0% | |
| !!! | AAAGCACCCTTTTTTATGTC+TGG | + | chr4_4:3591566-3591585 | Msa0664570:CDS | 35.0% |
| !!! | AGACTATTTTTTGTGAGCAG+TGG | + | chr4_4:3591641-3591660 | Msa0664570:CDS | 35.0% |
| GTGGAAACTTCCTACATTAC+TGG | - | chr4_4:3583457-3583476 | None:intergenic | 40.0% | |
| AAAAGGAGAGTGAAGTGTAG+TGG | - | chr4_4:3583551-3583570 | None:intergenic | 40.0% | |
| !!! | CCCACATGTTATTTTTCCCA+TGG | + | chr4_4:3583649-3583668 | Msa0664570:five_prime_UTR | 40.0% |
| AAACATAGCTTGGAGTGAGA+AGG | - | chr4_4:3583769-3583788 | None:intergenic | 40.0% | |
| AGTTGCTTAAGATGGATGCA+AGG | + | chr4_4:3584026-3584045 | Msa0664570:intron | 40.0% | |
| ACGAAAGAGATCCATACAAG+AGG | + | chr4_4:3584143-3584162 | Msa0664570:intron | 40.0% | |
| TAGTGAGTACCCACAATTTG+TGG | + | chr4_4:3584528-3584547 | Msa0664570:intron | 40.0% | |
| CGCATTACAGCTATATTTGC+TGG | + | chr4_4:3584614-3584633 | Msa0664570:five_prime_UTR | 40.0% | |
| AAAGAAGTTGGACACATGCT+TGG | + | chr4_4:3584640-3584659 | Msa0664570:five_prime_UTR | 40.0% | |
| AAGAAGTTGGACACATGCTT+GGG | + | chr4_4:3584641-3584660 | Msa0664570:five_prime_UTR | 40.0% | |
| ! | GACGTTTTCTCCAATTGTGA+TGG | + | chr4_4:3584713-3584732 | Msa0664570:five_prime_UTR | 40.0% |
| ATGCGTTACTCCATCACAAT+TGG | - | chr4_4:3584726-3584745 | None:intergenic | 40.0% | |
| TCCCAATACACTTCTAACCT+CGG | + | chr4_4:3586017-3586036 | Msa0664570:intron | 40.0% | |
| ! | TCCGAGGTTAGAAGTGTATT+GGG | - | chr4_4:3586021-3586040 | None:intergenic | 40.0% |
| ! | TTCCGAGGTTAGAAGTGTAT+TGG | - | chr4_4:3586022-3586041 | None:intergenic | 40.0% |
| ACGATGGGTAATAGTCACTT+TGG | + | chr4_4:3586193-3586212 | Msa0664570:intron | 40.0% | |
| ACACCTCATTATCGCTCTAT+TGG | - | chr4_4:3586623-3586642 | None:intergenic | 40.0% | |
| CAATGTGTGGTTACGTTGAT+GGG | - | chr4_4:3586879-3586898 | None:intergenic | 40.0% | |
| TCAATGTGTGGTTACGTTGA+TGG | - | chr4_4:3586880-3586899 | None:intergenic | 40.0% | |
| CAAATTTGCGGCAACAACAA+TGG | + | chr4_4:3587052-3587071 | Msa0664570:exon | 40.0% | |
| ! | CGGTTATTGTTGTTATCGGA+AGG | - | chr4_4:3587173-3587192 | None:intergenic | 40.0% |
| ! | ACGGCGGTTATTGTTGTTAT+CGG | - | chr4_4:3587177-3587196 | None:intergenic | 40.0% |
| GATGGATCCGTTAGTGTAAT+TGG | + | chr4_4:3587677-3587696 | Msa0664570:intron | 40.0% | |
| ! | AACTTGTTTGCTCGATACTC+TGG | + | chr4_4:3587889-3587908 | Msa0664570:intron | 40.0% |
| CATTCATCACTCTTACTCGT+TGG | + | chr4_4:3588238-3588257 | Msa0664570:intron | 40.0% | |
| TGTTGACCTAATATGAGAGG+AGG | - | chr4_4:3588278-3588297 | None:intergenic | 40.0% | |
| TTTGGTGAGGAATGTTAGCT+TGG | + | chr4_4:3588972-3588991 | Msa0664570:intron | 40.0% | |
| ! | CAGAGTATATCTAAAACGCC+TGG | - | chr4_4:3589070-3589089 | None:intergenic | 40.0% |
| !! | CAGGCGTTTTAGATATACTC+TGG | + | chr4_4:3589068-3589087 | Msa0664570:CDS | 40.0% |
| !!! | GGCTGCACTGCTTTTTAAAT+TGG | + | chr4_4:3589247-3589266 | Msa0664570:intron | 40.0% |
| !!! | GCACTGCTTTTTAAATTGGC+CGG | + | chr4_4:3589251-3589270 | Msa0664570:CDS | 40.0% |
| TATACCTAGTTCACGTTCAC+CGG | - | chr4_4:3589273-3589292 | None:intergenic | 40.0% | |
| CTTTCTAGGTTCTACGTTCT+CGG | - | chr4_4:3589363-3589382 | None:intergenic | 40.0% | |
| TGTGATACAACTTACAAGGG+TGG | - | chr4_4:3589412-3589431 | None:intergenic | 40.0% | |
| ATCGCAACAATTGACCATTC+TGG | - | chr4_4:3589508-3589527 | None:intergenic | 40.0% | |
| TCTGCTTTACAGCAATATGG+AGG | + | chr4_4:3590063-3590082 | Msa0664570:CDS | 40.0% | |
| CTGCTTTACAGCAATATGGA+GGG | + | chr4_4:3590064-3590083 | Msa0664570:CDS | 40.0% | |
| TGCTTTACAGCAATATGGAG+GGG | + | chr4_4:3590065-3590084 | Msa0664570:CDS | 40.0% | |
| !!! | AAACTTCTCCCTTTTTTCCG+AGG | - | chr4_4:3590281-3590300 | None:intergenic | 40.0% |
| GGAAAAAAGGGAGAAGTTTC+TGG | + | chr4_4:3590282-3590301 | Msa0664570:CDS | 40.0% | |
| GAAAGAAAGGATAAACCACC+GGG | - | chr4_4:3590745-3590764 | None:intergenic | 40.0% | |
| TGGAGTAAAGGATGGTATGA+TGG | + | chr4_4:3590783-3590802 | Msa0664570:CDS | 40.0% | |
| GGAGTAAAGGATGGTATGAT+GGG | + | chr4_4:3590784-3590803 | Msa0664570:CDS | 40.0% | |
| GAGTAAAGGATGGTATGATG+GGG | + | chr4_4:3590785-3590804 | Msa0664570:CDS | 40.0% | |
| AGTAAAGGATGGTATGATGG+GGG | + | chr4_4:3590786-3590805 | Msa0664570:CDS | 40.0% | |
| GAGGATGGCATGTTAAGATT+TGG | + | chr4_4:3590915-3590934 | Msa0664570:intron | 40.0% | |
| TTGTTACAGGTCATGAGAAG+TGG | + | chr4_4:3591218-3591237 | Msa0664570:intron | 40.0% | |
| TGTTACAGGTCATGAGAAGT+GGG | + | chr4_4:3591219-3591238 | Msa0664570:intron | 40.0% | |
| ACCCCTTAAAATAGGAGATC+AGG | + | chr4_4:3591289-3591308 | Msa0664570:CDS | 40.0% | |
| TTACCTCTATCGGTATACTC+AGG | + | chr4_4:3591371-3591390 | Msa0664570:intron | 40.0% | |
| GTGATTAATACTCCATCAGC+AGG | - | chr4_4:3591399-3591418 | None:intergenic | 40.0% | |
| ! | GCTGATGGAGTATTAATCAC+AGG | + | chr4_4:3591399-3591418 | Msa0664570:CDS | 40.0% |
| AGTCGGTGTACCAGTAATGT+AGG | + | chr4_4:3583444-3583463 | Msa0664570:five_prime_UTR | 45.0% | |
| AGATAGTGACACGGAAACCA+AGG | + | chr4_4:3583913-3583932 | Msa0664570:intron | 45.0% | |
| GCTGTGTACTTAGTTGTCCA+GGG | - | chr4_4:3584080-3584099 | None:intergenic | 45.0% | |
| AGAAGTTGGACACATGCTTG+GGG | + | chr4_4:3584642-3584661 | Msa0664570:five_prime_UTR | 45.0% | |
| TACCCGCTGTAAGTAAGGTT+CGG | + | chr4_4:3584665-3584684 | Msa0664570:five_prime_UTR | 45.0% | |
| CATCACCGTACAATACCACA+AGG | + | chr4_4:3586689-3586708 | Msa0664570:intron | 45.0% | |
| GTGTGCCTTGTGGTATTGTA+CGG | - | chr4_4:3586697-3586716 | None:intergenic | 45.0% | |
| AGAATGAGTTGTGTGCCTTG+TGG | - | chr4_4:3586707-3586726 | None:intergenic | 45.0% | |
| GCAACAACAATGGCTTCCAA+CGG | + | chr4_4:3587062-3587081 | Msa0664570:exon | 45.0% | |
| GATAACAACAATAACCGCCG+TGG | + | chr4_4:3587176-3587195 | Msa0664570:CDS | 45.0% | |
| ! | CGTTGTTGTTGTTATCGCCA+CGG | - | chr4_4:3587196-3587215 | None:intergenic | 45.0% |
| CGTGGCGATAACAACAACAA+CGG | + | chr4_4:3587194-3587213 | Msa0664570:CDS | 45.0% | |
| TACGCTCCTCCTCTCATATT+AGG | + | chr4_4:3588269-3588288 | Msa0664570:intron | 45.0% | |
| AACCTGCAAGTGTATCTGCT+AGG | + | chr4_4:3588589-3588608 | Msa0664570:intron | 45.0% | |
| ACCTGCAAGTGTATCTGCTA+GGG | + | chr4_4:3588590-3588609 | Msa0664570:intron | 45.0% | |
| GCTCATCAAGATTGCACTTG+TGG | - | chr4_4:3588699-3588718 | None:intergenic | 45.0% | |
| ! | TCAGCAGCATTGAACAACTG+TGG | - | chr4_4:3588768-3588787 | None:intergenic | 45.0% |
| AAGCCGACACACTGATGATT+TGG | - | chr4_4:3588910-3588929 | None:intergenic | 45.0% | |
| ATACAACTTACAAGGGTGGC+AGG | - | chr4_4:3589408-3589427 | None:intergenic | 45.0% | |
| ! | TGTAGTTTGTATTCTGCGGC+AGG | + | chr4_4:3589785-3589804 | Msa0664570:intron | 45.0% |
| AAGTCACCAACTGAAGGTTG+AGG | - | chr4_4:3589994-3590013 | None:intergenic | 45.0% | |
| !! | CAACCTTCAGTTGGTGACTT+TGG | + | chr4_4:3589994-3590013 | Msa0664570:CDS | 45.0% |
| ACTCCAAAGTCACCAACTGA+AGG | - | chr4_4:3590000-3590019 | None:intergenic | 45.0% | |
| !! | TCAGTTGGTGACTTTGGAGT+TGG | + | chr4_4:3590000-3590019 | Msa0664570:CDS | 45.0% |
| ! | AGAGGTTTTTATGGGAGGCT+TGG | + | chr4_4:3590381-3590400 | Msa0664570:intron | 45.0% |
| TGTAGCAGCTGTAGTGTCAT+TGG | + | chr4_4:3590430-3590449 | Msa0664570:CDS | 45.0% | |
| ! | GCTGTAGTGTCATTGGTACT+TGG | + | chr4_4:3590437-3590456 | Msa0664570:CDS | 45.0% |
| TCACTTGTAATTCGCAGGGT+TGG | + | chr4_4:3590763-3590782 | Msa0664570:intron | 45.0% | |
| AATTCGCAGGGTTGGAGTAA+AGG | + | chr4_4:3590771-3590790 | Msa0664570:intron | 45.0% | |
| GAACCTGAGTATACCGATAG+AGG | - | chr4_4:3591377-3591396 | None:intergenic | 45.0% | |
| TATACTCAGGTTCCTGCTGA+TGG | + | chr4_4:3591384-3591403 | Msa0664570:intron | 45.0% | |
| ATCGACGAATCCAGTATGAC+TGG | + | chr4_4:3591435-3591454 | Msa0664570:CDS | 45.0% | |
| CTTGCTTTCACCAGTCATAC+TGG | - | chr4_4:3591448-3591467 | None:intergenic | 45.0% | |
| TCTGGTTGCAAAGTAGCAGA+TGG | + | chr4_4:3591584-3591603 | Msa0664570:CDS | 45.0% | |
| TGCAAAGTAGCAGATGGTGT+TGG | + | chr4_4:3591590-3591609 | Msa0664570:CDS | 45.0% | |
| !! | AGATGGTGTTGGCGTTATGA+TGG | + | chr4_4:3591601-3591620 | Msa0664570:CDS | 45.0% |
| !!! | TTATTATAATTTTAAATGAT+AGG | + | chr4_4:3585186-3585205 | Msa0664570:intron | 5.0% |
| !! | TATAAAAAAATATTATTAGT+TGG | - | chr4_4:3585674-3585693 | None:intergenic | 5.0% |
| !!! | AATTAATTTTTATTTTTAGT+AGG | - | chr4_4:3588647-3588666 | None:intergenic | 5.0% |
| CACCTAACAGTGACATTCCC+TGG | + | chr4_4:3584060-3584079 | Msa0664570:intron | 50.0% | |
| GTCCAGGGAATGTCACTGTT+AGG | - | chr4_4:3584065-3584084 | None:intergenic | 50.0% | |
| GGCTGTGTACTTAGTTGTCC+AGG | - | chr4_4:3584081-3584100 | None:intergenic | 50.0% | |
| GTACACAGCCCAGATCATGT+TGG | + | chr4_4:3584091-3584110 | Msa0664570:intron | 50.0% | |
| ACCCGCTGTAAGTAAGGTTC+GGG | + | chr4_4:3584666-3584685 | Msa0664570:five_prime_UTR | 50.0% | |
| ACCCCGAACCTTACTTACAG+CGG | - | chr4_4:3584671-3584690 | None:intergenic | 50.0% | |
| AGTGCCACACAGAGATGGTA+GGG | - | chr4_4:3586983-3587002 | None:intergenic | 50.0% | |
| TACCATCTCTGTGTGGCACT+GGG | + | chr4_4:3586983-3587002 | Msa0664570:intron | 50.0% | |
| ACAATGGCTTCCAACGGCAT+CGG | + | chr4_4:3587068-3587087 | Msa0664570:exon | 50.0% | |
| !! | AACGGCATCGGTAACGGTAA+CGG | + | chr4_4:3587080-3587099 | Msa0664570:CDS | 50.0% |
| GTCGTCATCGTCATTGTGAC+CGG | - | chr4_4:3587129-3587148 | None:intergenic | 50.0% | |
| ! | TGTTGTTGTTATCGCCACGG+CGG | - | chr4_4:3587193-3587212 | None:intergenic | 50.0% |
| CTCATGAAACTCTTCGCCGT+TGG | + | chr4_4:3587291-3587310 | Msa0664570:CDS | 50.0% | |
| CCTGCAAGTGTATCTGCTAG+GGG | + | chr4_4:3588591-3588610 | Msa0664570:intron | 50.0% | |
| TCTGGACTTCAAAGGGGAAG+AGG | + | chr4_4:3589086-3589105 | Msa0664570:CDS | 50.0% | |
| GTTTGTATTCTGCGGCAGGA+AGG | + | chr4_4:3589789-3589808 | Msa0664570:intron | 50.0% | |
| TTCTGCGGCAGGAAGGAATT+TGG | + | chr4_4:3589796-3589815 | Msa0664570:intron | 50.0% | |
| GTAGCTGCTGGACTTATCAC+TGG | - | chr4_4:3589964-3589983 | None:intergenic | 50.0% | |
| CCAACTGAAGGTTGAGGTGA+GGG | - | chr4_4:3589988-3590007 | None:intergenic | 50.0% | |
| ACCAACTGAAGGTTGAGGTG+AGG | - | chr4_4:3589989-3590008 | None:intergenic | 50.0% | |
| !! | GACTGTTTCTGCATGGTGCT+TGG | + | chr4_4:3590628-3590647 | Msa0664570:intron | 50.0% |
| ! | TGGGGTACCCGCTGTAAGTA+AGG | + | chr4_4:3584660-3584679 | Msa0664570:five_prime_UTR | 55.0% |
| CCCCGAACCTTACTTACAGC+GGG | - | chr4_4:3584670-3584689 | None:intergenic | 55.0% | |
| CCCGCTGTAAGTAAGGTTCG+GGG | + | chr4_4:3584667-3584686 | Msa0664570:five_prime_UTR | 55.0% | |
| ACACAGAGATGGTAGGGCAC+AGG | - | chr4_4:3586977-3586996 | None:intergenic | 55.0% | |
| TGTGCCCTACCATCTCTGTG+TGG | + | chr4_4:3586976-3586995 | Msa0664570:intron | 55.0% | |
| CAGTGCCACACAGAGATGGT+AGG | - | chr4_4:3586984-3587003 | None:intergenic | 55.0% | |
| CTACCATCTCTGTGTGGCAC+TGG | + | chr4_4:3586982-3587001 | Msa0664570:intron | 55.0% | |
| !! | GCTTCCAACGGCATCGGTAA+CGG | + | chr4_4:3587074-3587093 | Msa0664570:CDS | 55.0% |
| GTTACCGTTACCGATGCCGT+TGG | - | chr4_4:3587081-3587100 | None:intergenic | 55.0% | |
| GGCCATTTCGCCGTTACCAT+CGG | + | chr4_4:3587101-3587120 | Msa0664570:CDS | 55.0% | |
| !! | TGCCGATGGTAACGGCGAAA+TGG | - | chr4_4:3587106-3587125 | None:intergenic | 55.0% |
| CCCCTAGCAGATACACTTGC+AGG | - | chr4_4:3588594-3588613 | None:intergenic | 55.0% | |
| TCGTGTACAGCAAGCAGCAC+TGG | + | chr4_4:3589032-3589051 | Msa0664570:intron | 55.0% | |
| CACTGGTACTCAATGCGTCC+AGG | + | chr4_4:3589049-3589068 | Msa0664570:CDS | 55.0% | |
| TTGGCCGGTGAACGTGAACT+AGG | + | chr4_4:3589266-3589285 | Msa0664570:CDS | 55.0% | |
| CTTACAAGGGTGGCAGGCTA+TGG | - | chr4_4:3589402-3589421 | None:intergenic | 55.0% | |
| CCCTCACCTCAACCTTCAGT+TGG | + | chr4_4:3589985-3590004 | Msa0664570:CDS | 55.0% | |
| CGCAGGGTTGGAGTAAAGGA+TGG | + | chr4_4:3590775-3590794 | Msa0664570:intron | 55.0% | |
| TGTCGATAGTCGCTGACAGC+TGG | - | chr4_4:3591067-3591086 | None:intergenic | 55.0% | |
| TTCGCCGTTACCATCGGCAC+CGG | + | chr4_4:3587107-3587126 | Msa0664570:CDS | 60.0% | |
| !! | GTGACCGGTGCCGATGGTAA+CGG | - | chr4_4:3587114-3587133 | None:intergenic | 60.0% |
| ! | GTCATTGTGACCGGTGCCGA+TGG | - | chr4_4:3587120-3587139 | None:intergenic | 60.0% |
| ! | TGAGGTGAGGGTGTAGCTGC+TGG | - | chr4_4:3589976-3589995 | None:intergenic | 60.0% |
| GGCCCAGTGCCACACAGAGA+TGG | - | chr4_4:3586988-3587007 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 3583435 | 3591688 | 3583435 | ID=Msa0664570;Name=Msa0664570 |
| chr4_4 | mRNA | 3583435 | 3591688 | 3583435 | ID=Msa0664570-mRNA-1;Parent=Msa0664570;Name=Msa0664570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=408|1|0.92|1|0.83|0.76|13|0|395 |
| chr4_4 | exon | 3583435 | 3583670 | 3583435 | ID=Msa0664570-mRNA-1:exon:1187;Parent=Msa0664570-mRNA-1 |
| chr4_4 | exon | 3584614 | 3584755 | 3584614 | ID=Msa0664570-mRNA-1:exon:1188;Parent=Msa0664570-mRNA-1 |
| chr4_4 | exon | 3587041 | 3587316 | 3587041 | ID=Msa0664570-mRNA-1:exon:1189;Parent=Msa0664570-mRNA-1 |
| chr4_4 | exon | 3589042 | 3589158 | 3589042 | ID=Msa0664570-mRNA-1:exon:1190;Parent=Msa0664570-mRNA-1 |
| chr4_4 | exon | 3589248 | 3589287 | 3589248 | ID=Msa0664570-mRNA-1:exon:1191;Parent=Msa0664570-mRNA-1 |
| chr4_4 | exon | 3589965 | 3590086 | 3589965 | ID=Msa0664570-mRNA-1:exon:1192;Parent=Msa0664570-mRNA-1 |
| chr4_4 | exon | 3590173 | 3590304 | 3590173 | ID=Msa0664570-mRNA-1:exon:1193;Parent=Msa0664570-mRNA-1 |
| chr4_4 | exon | 3590383 | 3590472 | 3590383 | ID=Msa0664570-mRNA-1:exon:1194;Parent=Msa0664570-mRNA-1 |
| chr4_4 | exon | 3590780 | 3590849 | 3590780 | ID=Msa0664570-mRNA-1:exon:1195;Parent=Msa0664570-mRNA-1 |
| chr4_4 | exon | 3591068 | 3591138 | 3591068 | ID=Msa0664570-mRNA-1:exon:1196;Parent=Msa0664570-mRNA-1 |
| chr4_4 | exon | 3591227 | 3591310 | 3591227 | ID=Msa0664570-mRNA-1:exon:1197;Parent=Msa0664570-mRNA-1 |
| chr4_4 | exon | 3591393 | 3591470 | 3591393 | ID=Msa0664570-mRNA-1:exon:1198;Parent=Msa0664570-mRNA-1 |
| chr4_4 | exon | 3591551 | 3591688 | 3591551 | ID=Msa0664570-mRNA-1:exon:1199;Parent=Msa0664570-mRNA-1 |
| chr4_4 | five_prime_UTR | 3583435 | 3583670 | 3583435 | ID=Msa0664570-mRNA-1:five_prime_utr;Parent=Msa0664570-mRNA-1 |
| chr4_4 | five_prime_UTR | 3584614 | 3584755 | 3584614 | ID=Msa0664570-mRNA-1:five_prime_utr;Parent=Msa0664570-mRNA-1 |
| chr4_4 | five_prime_UTR | 3587041 | 3587070 | 3587041 | ID=Msa0664570-mRNA-1:five_prime_utr;Parent=Msa0664570-mRNA-1 |
| chr4_4 | CDS | 3587071 | 3587316 | 3587071 | ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1 |
| chr4_4 | CDS | 3589042 | 3589158 | 3589042 | ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1 |
| chr4_4 | CDS | 3589248 | 3589287 | 3589248 | ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1 |
| chr4_4 | CDS | 3589965 | 3590086 | 3589965 | ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1 |
| chr4_4 | CDS | 3590173 | 3590304 | 3590173 | ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1 |
| chr4_4 | CDS | 3590383 | 3590472 | 3590383 | ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1 |
| chr4_4 | CDS | 3590780 | 3590849 | 3590780 | ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1 |
| chr4_4 | CDS | 3591068 | 3591138 | 3591068 | ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1 |
| chr4_4 | CDS | 3591227 | 3591310 | 3591227 | ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1 |
| chr4_4 | CDS | 3591393 | 3591470 | 3591393 | ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1 |
| chr4_4 | CDS | 3591551 | 3591688 | 3591551 | ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
