AlfalfaGEDB | Msa0664570

M. sativa cultivar zhongmu-4 / Msa0664570

KEGG: K01537
GO: GO:0000003 GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007275 GO:0007338 GO:0008150 GO:0008324 GO:0009555 GO:0009566 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0019953 GO:0022414 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044703 GO:0046873 GO:0048229 GO:0048856 GO:0051179 GO:0051234 GO:0051704 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132
PFAM: PF12515.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664570	KEH28611.1	96.267	375	9	4	1	375	1	370	0.0	728

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664570	sp\|Q9LU41\|ACA9_ARATH	72.699	326	86	1	50	375	30	352	2.58e-164	492

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664570	A0A072UG00	96.267	375	9	4	1	375	1	370	0.0	728

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0077450	Msa0664570	0.804318	2.288666e-49	-8.615850e-47
Msa0078060	Msa0664570	0.802303	5.980890e-49	-8.615850e-47
Msa0105070	Msa0664570	0.804734	1.873421e-49	-8.615850e-47
Msa0123300	Msa0664570	0.819667	1.029615e-52	-8.615850e-47
Msa0133980	Msa0664570	-0.806574	7.700416e-50	-8.615850e-47
Msa0144790	Msa0664570	0.811228	7.774784e-51	-8.615850e-47
Msa0152430	Msa0664570	0.805361	1.385363e-49	-8.615850e-47
Msa0170140	Msa0664570	0.813507	2.472229e-51	-8.615850e-47
Msa0191250	Msa0664570	0.805096	1.574600e-49	-8.615850e-47
Msa0197810	Msa0664570	0.818692	1.716285e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664570	MtrunA17_Chr4g0002331	96.267	375	9	4	1	375	1	370	0.0	728
Msa0664570	MtrunA17_Chr2g0334231	80.707	311	51	2	65	375	50	351	3.87e-168	480
Msa0664570	MtrunA17_Chr2g0298871	68.987	316	91	2	67	375	42	357	2.05e-144	437
Msa0664570	MtrunA17_Chr8g0382071	47.022	319	155	5	69	381	12	322	2.89e-77	258
Msa0664570	MtrunA17_Chr5g0401211	43.034	323	172	8	65	381	9	325	4.06e-73	246
Msa0664570	MtrunA17_Chr1g0173111	43.987	316	165	4	71	381	13	321	3.38e-72	244
Msa0664570	MtrunA17_Chr3g0134771	40.308	325	185	3	62	381	6	326	3.24e-69	235
Msa0664570	MtrunA17_Chr8g0340271	47.755	245	118	3	141	375	53	297	6.23e-69	226
Msa0664570	MtrunA17_Chr6g0456201	48.193	249	118	3	138	375	51	299	4.75e-68	232
Msa0664570	MtrunA17_Chr4g0020551	46.667	225	118	1	151	375	27	249	6.25e-63	216

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664570	AT3G21180.1	72.699	326	86	1	50	375	30	352	2.62e-165	492
Msa0664570	AT4G29900.1	70.206	339	95	3	38	375	6	339	1.33e-155	466
Msa0664570	AT4G29900.2	70.206	339	95	3	38	375	6	339	1.33e-155	466
Msa0664570	AT5G57110.1	64.583	336	110	4	41	375	12	339	1.02e-136	417
Msa0664570	AT5G57110.3	64.583	336	110	4	41	375	12	339	1.02e-136	417
Msa0664570	AT5G57110.2	64.583	336	110	4	41	375	12	339	1.02e-136	417
Msa0664570	AT4G37640.1	41.796	323	181	5	62	381	6	324	1.36e-75	253
Msa0664570	AT2G22950.1	42.056	321	178	6	65	381	9	325	2.16e-73	247
Msa0664570	AT3G57330.1	42.857	322	171	6	65	381	8	321	2.82e-71	241
Msa0664570	AT2G41560.1	42.633	319	171	4	68	381	10	321	5.83e-71	241

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Find 100 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGAGTGAAGTGTAG+TGG	0.536314	4_4:-3583548	None:intergenic
AAAGAAGTTGGACACATGCT+TGG	0.457966	4_4:+3584640	Msa0664570:five_prime_UTR
AAATCTATCTGAAGGAGATT+TGG	0.340059	4_4:-3583603	None:intergenic
AACGGCATCGGTAACGGTAA+CGG	0.564441	4_4:+3587080	Msa0664570:CDS
AAGAAGTTGGACACATGCTT+GGG	0.428357	4_4:+3584641	Msa0664570:five_prime_UTR
AAGATGTTAAGGCAATTTCG+TGG	0.568825	4_4:-3583473	None:intergenic
AAGTCACCAACTGAAGGTTG+AGG	0.627694	4_4:-3589991	None:intergenic
AATTCGCAGGGTTGGAGTAA+AGG	0.482854	4_4:+3590771	Msa0664570:intron
ACAACTTGCTTCAATGTCTA+AGG	0.354706	4_4:+3590029	Msa0664570:CDS
ACAATGGCTTCCAACGGCAT+CGG	0.597440	4_4:+3587068	Msa0664570:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAAATTATGATGAGGAT+AGG	-	chr4_4:3583527-3583546	None:intergenic	30.0%
AGATGAGACGAAGAAAAAAA+AGG	-	chr4_4:3583568-3583587	None:intergenic	30.0%
AAATCTATCTGAAGGAGATT+TGG	-	chr4_4:3583606-3583625	None:intergenic	30.0%
AGAGATACAAATCTATCTGA+AGG	-	chr4_4:3583614-3583633	None:intergenic	30.0%
TCCAAATAACAATAAGGCTA+AGG	-	chr4_4:3583823-3583842	None:intergenic	30.0%
TGCTCTTCCAAATAACAATA+AGG	-	chr4_4:3583829-3583848	None:intergenic	30.0%
CTTTCGTGATGTATCTATTA+CGG	-	chr4_4:3584130-3584149	None:intergenic	30.0%
TATGTCATCTACTCTTTAGT+CGG	+	chr4_4:3584341-3584360	Msa0664570:intron	30.0%
CATAAAACACTTTGTAAGTC+GGG	-	chr4_4:3584398-3584417	None:intergenic	30.0%
GCATAAAACACTTTGTAAGT+CGG	-	chr4_4:3584399-3584418	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	3583435	3591688	3583435	ID=Msa0664570;Name=Msa0664570
chr4_4	mRNA	3583435	3591688	3583435	ID=Msa0664570-mRNA-1;Parent=Msa0664570;Name=Msa0664570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=408\|1\|0.92\|1\|0.83\|0.76\|13\|0\|395
chr4_4	exon	3583435	3583670	3583435	ID=Msa0664570-mRNA-1:exon:1187;Parent=Msa0664570-mRNA-1
chr4_4	exon	3584614	3584755	3584614	ID=Msa0664570-mRNA-1:exon:1188;Parent=Msa0664570-mRNA-1
chr4_4	exon	3587041	3587316	3587041	ID=Msa0664570-mRNA-1:exon:1189;Parent=Msa0664570-mRNA-1
chr4_4	exon	3589042	3589158	3589042	ID=Msa0664570-mRNA-1:exon:1190;Parent=Msa0664570-mRNA-1
chr4_4	exon	3589248	3589287	3589248	ID=Msa0664570-mRNA-1:exon:1191;Parent=Msa0664570-mRNA-1
chr4_4	exon	3589965	3590086	3589965	ID=Msa0664570-mRNA-1:exon:1192;Parent=Msa0664570-mRNA-1
chr4_4	exon	3590173	3590304	3590173	ID=Msa0664570-mRNA-1:exon:1193;Parent=Msa0664570-mRNA-1
chr4_4	exon	3590383	3590472	3590383	ID=Msa0664570-mRNA-1:exon:1194;Parent=Msa0664570-mRNA-1
chr4_4	exon	3590780	3590849	3590780	ID=Msa0664570-mRNA-1:exon:1195;Parent=Msa0664570-mRNA-1
chr4_4	exon	3591068	3591138	3591068	ID=Msa0664570-mRNA-1:exon:1196;Parent=Msa0664570-mRNA-1
chr4_4	exon	3591227	3591310	3591227	ID=Msa0664570-mRNA-1:exon:1197;Parent=Msa0664570-mRNA-1
chr4_4	exon	3591393	3591470	3591393	ID=Msa0664570-mRNA-1:exon:1198;Parent=Msa0664570-mRNA-1
chr4_4	exon	3591551	3591688	3591551	ID=Msa0664570-mRNA-1:exon:1199;Parent=Msa0664570-mRNA-1
chr4_4	five_prime_UTR	3583435	3583670	3583435	ID=Msa0664570-mRNA-1:five_prime_utr;Parent=Msa0664570-mRNA-1
chr4_4	five_prime_UTR	3584614	3584755	3584614	ID=Msa0664570-mRNA-1:five_prime_utr;Parent=Msa0664570-mRNA-1
chr4_4	five_prime_UTR	3587041	3587070	3587041	ID=Msa0664570-mRNA-1:five_prime_utr;Parent=Msa0664570-mRNA-1
chr4_4	CDS	3587071	3587316	3587071	ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1
chr4_4	CDS	3589042	3589158	3589042	ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1
chr4_4	CDS	3589248	3589287	3589248	ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1
chr4_4	CDS	3589965	3590086	3589965	ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1
chr4_4	CDS	3590173	3590304	3590173	ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1
chr4_4	CDS	3590383	3590472	3590383	ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1
chr4_4	CDS	3590780	3590849	3590780	ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1
chr4_4	CDS	3591068	3591138	3591068	ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1
chr4_4	CDS	3591227	3591310	3591227	ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1
chr4_4	CDS	3591393	3591470	3591393	ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1
chr4_4	CDS	3591551	3591688	3591551	ID=Msa0664570-mRNA-1:cds;Parent=Msa0664570-mRNA-1

Gene Sequence

>Msa0664570

ATGGCTTCCAACGGCATCGGTAACGGTAACGGCCATTTCGCCGTTACCATCGGCACCGGTCACAATGACGATGACGACGATAACAACAATCATCATCATCCTTCCGATAACAACAATAACCGCCGTGGCGATAACAACAACAACGGCGACAACAACGACGAAGATGATGAGCAAATTGATCCTGATGATCCTTTTGATATTGCTCAAACTAAGAATGCTTCTCATGAAACTCTTCGCCGTTGGAGACAAGCAGCACTGGTACTCAATGCGTCCAGGCGTTTTAGATATACTCTGGACTTCAAAGGGGAAGAGGAAAAACAGCAAAAGAAGAGCTTAATTAGAGCACATGCACAAGTCATAAGAGCTGCACTGCTTTTTAAATTGGCCGGTGAACGTGAACTAGTGATAAGTCCAGCAGCTACACCCTCACCTCAACCTTCAGTTGGTGACTTTGGAGTTGGCCTAGAACAACTTGCTTCAATGTCTAAGGATCAAAATATTTCTGCTTTACAGCAATATGGAGGGGTTAAAGGCCTATCAAGTTTACTAAAATCAAGTCCAGATAAAGGAATTAACGGAGATGATGCTGATCTATTGAAAAGAAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTCTGGAGGTTTTTATGGGAGGCTTGGCAAGATCTGACCCTCATAATATTGATTGTAGCAGCTGTAGTGTCATTGGTACTTGGAATAAAAACAGAGGGTTGGAGTAAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTTTACTTGTTATTGTAGTTACTGCTGTCAGCGACTATCGACAATCTCTGCAATTTCAGAATTTGAATGCAGAGAAACAAAATATACAATTGGAGGTCATGAGAAGTGGGAGAACGATTAAAATCTCTATATTTGATATTGTTGTTGGTGATGTTATACCCCTTAAAATAGGAGATCAGGTTCCTGCTGATGGAGTATTAATCACAGGTCACTCACTTGCAATCGACGAATCCAGTATGACTGGTGAAAGCAAGATTGTTCATAAGGATCAGAAAGCACCCTTTTTTATGTCTGGTTGCAAAGTAGCAGATGGTGTTGGCGTTATGATGGTACAATATGATAATCTTAGACTATTTTTTGTGAGCAGTGGCTTTTGTCGATATATAAAAAATTAA

Protein sequence

>Msa0664570

MASNGIGNGNGHFAVTIGTGHNDDDDDNNNHHHPSDNNNNRRGDNNNNGDNNDEDDEQIDPDDPFDIAQTKNASHETLRRWRQAALVLNASRRFRYTLDFKGEEEKQQKKSLIRAHAQVIRAALLFKLAGERELVISPAATPSPQPSVGDFGVGLEQLASMSKDQNISALQQYGGVKGLSSLLKSSPDKGINGDDADLLKRKNAFGTNTYPRKKGRSFWRFLWEAWQDLTLIILIVAAVVSLVLGIKTEGWSKGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEVMRSGRTIKISIFDIVVGDVIPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVHKDQKAPFFMSGCKVADGVGVMMVQYDNLRLFFVSSGFCRYIKN*