AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1418260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1418260 MtrunA17_Chr2g0317001 100.000 101 0 0 1 101 1 101 3.92e-65 209
Msa1418260 MtrunA17_Chr5g0419441 47.253 91 48 0 13 103 237 327 9.50e-22 89.0
Msa1418260 MtrunA17_Chr8g0386981 39.583 96 54 1 10 101 403 498 5.83e-16 72.4
Msa1418260 MtrunA17_Chr3g0130151 37.864 103 57 2 6 101 232 334 3.06e-14 67.4
Msa1418260 MtrunA17_Chr1g0202831 35.417 96 58 1 10 101 406 501 3.27e-14 67.4
Msa1418260 MtrunA17_Chr4g0013131 40.230 87 50 1 14 98 11 97 5.99e-14 66.6
Msa1418260 MtrunA17_Chr2g0330211 35.354 99 63 1 21 118 24 122 1.55e-13 65.5
Msa1418260 MtrunA17_Chr6g0450571 35.556 90 58 0 19 108 20 109 1.55e-13 65.5
Msa1418260 MtrunA17_Chr4g0038501 35.577 104 56 2 9 101 4 107 1.58e-12 62.8
Msa1418260 MtrunA17_Chr8g0384301 36.782 87 51 1 19 101 303 389 2.12e-12 62.4
Msa1418260 MtrunA17_Chr1g0188991 36.364 88 56 0 18 105 18 105 4.08e-12 61.6
Msa1418260 MtrunA17_Chr3g0133541 41.667 84 45 1 19 98 311 394 5.19e-12 61.2
Msa1418260 MtrunA17_Chr7g0244521 39.080 87 51 1 14 98 11 97 9.81e-12 60.5
Msa1418260 MtrunA17_Chr4g0038091 33.654 104 58 2 9 101 4 107 1.76e-11 59.7
Msa1418260 MtrunA17_Chr3g0107011 33.010 103 66 2 14 113 13 115 2.18e-11 59.3
Msa1418260 MtrunA17_Chr5g0402601 35.714 84 50 1 19 98 376 459 3.68e-11 58.5
Msa1418260 MtrunA17_Chr4g0000431 32.911 79 53 0 19 97 28 106 9.63e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1418260 AT3G15220.1 80.909 110 19 1 1 108 1 110 5.25e-49 166
Msa1418260 AT1G53165.1 85.149 101 15 0 1 101 1 101 5.83e-48 162
Msa1418260 AT1G53165.2 85.149 101 15 0 1 101 1 101 5.90e-48 162
Msa1418260 AT1G53165.3 85.149 101 15 0 1 101 1 101 6.09e-48 162
Msa1418260 AT1G69220.1 45.545 101 53 1 9 109 243 341 4.56e-22 90.1
Msa1418260 AT1G69220.2 48.276 87 43 1 23 109 230 314 5.50e-20 84.3
Msa1418260 AT1G63700.1 41.000 100 52 2 9 101 391 490 1.38e-14 68.9
Msa1418260 AT1G63700.2 41.000 100 52 2 9 101 391 490 1.38e-14 68.9
Msa1418260 AT1G70430.4 37.500 80 50 0 18 97 19 98 2.27e-14 68.2
Msa1418260 AT1G70430.1 37.500 80 50 0 18 97 19 98 2.34e-14 68.2
Msa1418260 AT1G70430.3 37.500 80 50 0 18 97 19 98 2.48e-14 68.2
Msa1418260 AT5G14720.1 40.506 79 47 0 19 97 20 98 1.56e-13 65.9
Msa1418260 AT5G14720.2 40.506 79 47 0 19 97 20 98 1.56e-13 65.9
Msa1418260 AT1G53570.6 36.735 98 56 2 19 110 218 315 2.90e-13 65.1
Msa1418260 AT1G53570.7 36.735 98 56 2 19 110 218 315 2.90e-13 65.1
Msa1418260 AT1G53570.5 36.735 98 56 2 19 110 218 315 2.94e-13 65.1
Msa1418260 AT1G53570.4 36.735 98 56 2 19 110 218 315 2.95e-13 65.1
Msa1418260 AT1G53570.2 36.735 98 56 2 19 110 218 315 2.95e-13 65.1
Msa1418260 AT1G53570.3 36.735 98 56 2 19 110 218 315 2.95e-13 65.1
Msa1418260 AT1G53570.1 36.735 98 56 2 19 110 218 315 2.95e-13 65.1
Msa1418260 AT3G13530.1 41.463 82 47 1 21 101 26 107 4.07e-12 62.0
Msa1418260 AT2G34180.1 35.714 98 61 1 19 114 61 158 9.30e-12 60.8
Msa1418260 AT3G07980.2 40.244 82 48 1 21 101 26 107 1.41e-11 60.5
Msa1418260 AT3G07980.1 40.244 82 48 1 21 101 26 107 1.44e-11 60.5
Msa1418260 AT5G58380.1 39.506 81 47 1 20 98 17 97 3.77e-11 58.9
Msa1418260 AT1G79640.6 33.735 83 55 0 15 97 13 95 3.81e-11 58.9
Msa1418260 AT1G79640.2 33.735 83 55 0 15 97 13 95 4.09e-11 58.9
Msa1418260 AT1G79640.4 33.735 83 55 0 15 97 13 95 4.09e-11 58.9
Msa1418260 AT1G79640.3 33.735 83 55 0 15 97 13 95 4.09e-11 58.9
Msa1418260 AT1G79640.1 33.735 83 55 0 15 97 13 95 4.10e-11 58.9
Msa1418260 AT1G79640.5 33.735 83 55 0 15 97 16 98 4.22e-11 58.9
Msa1418260 AT5G45820.1 37.349 83 50 1 20 100 17 99 5.27e-11 58.5
Msa1418260 AT1G29230.1 32.653 98 64 1 19 114 78 175 8.30e-11 58.2

Find 28 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACTTCGTTGGAGCTTAT+TGG 0.210600 tig0024566:-4628 Msa1418260:CDS
CCATACATTACCGAGTATTA+TGG 0.265922 tig0024566:-1737 Msa1418260:CDS
TCATTTGGCGATGTATATAA+AGG 0.277525 tig0024566:-4598 Msa1418260:CDS
ATGGATAATAATGGAATATA+TGG 0.281731 tig0024566:-1690 Msa1418260:CDS
TTCCAAATCAATCACTTTGA+TGG 0.283069 tig0024566:+3007 None:intergenic
TTCTCAATCAAACGAAACTA+TGG 0.300714 tig0024566:-1709 Msa1418260:CDS
CTTATTGGACAGGGTTCATT+TGG 0.333775 tig0024566:-4613 Msa1418260:CDS
AACGAAACTATGGATAATAA+TGG 0.358601 tig0024566:-1699 Msa1418260:CDS
TGCCATCAAAGTGATTGATT+TGG 0.363398 tig0024566:-3009 Msa1418260:CDS
TTCGTTGGAGCTTATTGGAC+AGG 0.412049 tig0024566:-4623 Msa1418260:CDS
TCTGTGACTGAGAAGATTAC+CGG 0.415654 tig0024566:-1510 Msa1418260:CDS
CCATAATACTCGGTAATGTA+TGG 0.447528 tig0024566:+1737 None:intergenic
CATTTGGCGATGTATATAAA+GGG 0.452094 tig0024566:-4597 Msa1418260:intron
GCAGGTCTAGTTGAGGCAAC+AGG 0.471867 tig0024566:-4658 Msa1418260:CDS
GGGAGAAGGGTGGAAATCCT+TGG 0.481823 tig0024566:-1489 None:intergenic
CTGAGAAGATTACCGGGAGA+AGG 0.500005 tig0024566:-1503 Msa1418260:CDS
TGGTGTTTCAGATGTGTATG+AGG 0.502846 tig0024566:-4715 Msa1418260:intron
AAGGATTTCCACCCTTCTCC+CGG 0.508250 tig0024566:+1491 None:intergenic
AGGAACGAGATTCACTTCGT+TGG 0.513123 tig0024566:-4638 Msa1418260:CDS
ATAATAATGGAATATATGGC+TGG 0.554166 tig0024566:-1686 Msa1418260:CDS
TGAGAAGATTACCGGGAGAA+GGG 0.565935 tig0024566:-1502 Msa1418260:CDS
CTGTGACTGAGAAGATTACC+GGG 0.569390 tig0024566:-1509 Msa1418260:CDS
TCGTTGGAGCTTATTGGACA+GGG 0.590527 tig0024566:-4622 Msa1418260:CDS
GAAGATTACCGGGAGAAGGG+TGG 0.599791 tig0024566:-1499 Msa1418260:CDS
GAGAAAAGAACCATAATACT+CGG 0.638844 tig0024566:+1727 None:intergenic
TGACATTGACGATATTCAGA+AGG 0.640790 tig0024566:-1874 Msa1418260:intron
ATAATGGAATATATGGCTGG+CGG 0.670944 tig0024566:-1683 Msa1418260:CDS
GGATCTAGCAGGTCTAGTTG+AGG 0.675463 tig0024566:-4665 Msa1418260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATTTTTAAATTTAA+TGG - tig0024566:3928-3947 Msa1418260:intron 0.0%
!!! GTTTTTTATTTTAATTTTGA+TGG - tig0024566:1806-1825 Msa1418260:intron 10.0%
!! ATATGAAAATTTAATCATTT+GGG + tig0024566:4805-4824 None:intergenic 10.0%
!! TATTGAGAATTCAATTATTA+CGG - tig0024566:2201-2220 Msa1418260:intron 15.0%
!!! TACTTATCTTCATTTTTTAA+GGG + tig0024566:3878-3897 None:intergenic 15.0%
!!! TTACTTATCTTCATTTTTTA+AGG + tig0024566:3879-3898 None:intergenic 15.0%
!! ATAAAGTTCAATAAATTCAA+TGG + tig0024566:4495-4514 None:intergenic 15.0%
!! AATTTATTGAACTTTATTGA+TGG - tig0024566:4498-4517 Msa1418260:intron 15.0%
!! GATATGAAAATTTAATCATT+TGG + tig0024566:4806-4825 None:intergenic 15.0%
!!! TCTGTATTATATTTCTATGA+TGG - tig0024566:1623-1642 Msa1418260:intron 20.0%
!!! CTGTATTATATTTCTATGAT+GGG - tig0024566:1624-1643 Msa1418260:intron 20.0%
!!! TAATTTTGATGGATTGAATT+TGG - tig0024566:1817-1836 Msa1418260:intron 20.0%
!! ATTGAGAATTCAATTATTAC+GGG - tig0024566:2202-2221 Msa1418260:intron 20.0%
!! TATCATTTCATAATATCAGA+TGG + tig0024566:2260-2279 None:intergenic 20.0%
!! TTAATAGTCACTATTTATCA+CGG + tig0024566:2479-2498 None:intergenic 20.0%
!! AAATACTGATCAAATGAAAA+TGG + tig0024566:2572-2591 None:intergenic 20.0%
!! AAAAATTCCTATCTTAATTG+AGG + tig0024566:2781-2800 None:intergenic 20.0%
!!! AGAAATCAATTAAGATTTTG+AGG + tig0024566:2915-2934 None:intergenic 20.0%
!! AGACTAAAATTCAAATCAAT+TGG + tig0024566:2944-2963 None:intergenic 20.0%
!! ATATGGAAAGTAATTTAGAA+AGG - tig0024566:2976-2995 Msa1418260:intron 20.0%
!!! TGATAGAGTATATTATTTTC+TGG + tig0024566:3313-3332 None:intergenic 20.0%
!! GTAATAAAAGAATACATTAG+AGG - tig0024566:3376-3395 Msa1418260:intron 20.0%
!!! AACAGATAGTTTTACATATT+TGG + tig0024566:3450-3469 None:intergenic 20.0%
!! TGTTCTTGAAAATAATAGAA+GGG + tig0024566:3648-3667 None:intergenic 20.0%
!! ATGTTCTTGAAAATAATAGA+AGG + tig0024566:3649-3668 None:intergenic 20.0%
!!! AAATTTGAAGTTAGTCAAAT+GGG - tig0024566:4196-4215 Msa1418260:intron 20.0%
!! ATACAGATATTATCATCATT+AGG - tig0024566:4378-4397 Msa1418260:intron 20.0%
!!! CATATCAATTCATTTTTTTC+AGG - tig0024566:4820-4839 Msa1418260:intron 20.0%
!!! ATGGATAATAATGGAATATA+TGG - tig0024566:4919-4938 Msa1418260:intron 20.0%
!! ATTGAATTACACATTGTTTA+AGG + tig0024566:5046-5065 None:intergenic 20.0%
!!! AATTTGTGTTGCTTTTGAAT+TGG - tig0024566:1514-1533 Msa1418260:CDS 25.0%
!!! ATTTGTGTTGCTTTTGAATT+GGG - tig0024566:1515-1534 Msa1418260:CDS 25.0%
!! GTGTAAAAAGTTTGGATTTT+TGG - tig0024566:1549-1568 Msa1418260:intron 25.0%
!!! AAAAGTTTGGATTTTTGGAT+TGG - tig0024566:1554-1573 Msa1418260:intron 25.0%
! TAAATCAAAAGAGTAGATCT+AGG - tig0024566:2101-2120 Msa1418260:intron 25.0%
! TTGAGAATTCAATTATTACG+GGG - tig0024566:2203-2222 Msa1418260:intron 25.0%
! TGTAAATATAGAACCTTTAG+AGG - tig0024566:2308-2327 Msa1418260:intron 25.0%
! CTAGAATTGATAAACTCAAT+TGG - tig0024566:2430-2449 Msa1418260:intron 25.0%
! TGACTATTAATTGCTATGTT+TGG - tig0024566:2489-2508 Msa1418260:intron 25.0%
!! TAACCAGTGTTATTACTATT+CGG - tig0024566:2641-2660 Msa1418260:intron 25.0%
!! TAATTTAGAAAGGTGTGTTA+GGG - tig0024566:2986-3005 Msa1418260:intron 25.0%
! AGATTATGTTATCCCTATAT+AGG - tig0024566:3176-3195 Msa1418260:intron 25.0%
!!! TGTCATACTATCTTATTTTC+AGG - tig0024566:3551-3570 Msa1418260:intron 25.0%
! TTCTTGAAAATAATAGAAGG+GGG + tig0024566:3646-3665 None:intergenic 25.0%
! GTTCTTGAAAATAATAGAAG+GGG + tig0024566:3647-3666 None:intergenic 25.0%
! ATCAAATGCTCCTATAAAAT+TGG + tig0024566:3716-3735 None:intergenic 25.0%
! AGGTATAATCGAATATATGA+CGG + tig0024566:3752-3771 None:intergenic 25.0%
! AAGTTAGAACTACTTCATTA+AGG + tig0024566:3772-3791 None:intergenic 25.0%
! AGTAAAATAAGAATATCTGC+AGG - tig0024566:3894-3913 Msa1418260:intron 25.0%
!! GTTTTCAACTAAATGTCAAA+GGG + tig0024566:3997-4016 None:intergenic 25.0%
!!! ATTTTGACTCAACTACATAA+AGG - tig0024566:4135-4154 Msa1418260:intron 25.0%
!! GAAATTTGAAGTTAGTCAAA+TGG - tig0024566:4195-4214 Msa1418260:intron 25.0%
! ATAAATTCAATGGATACATG+AGG + tig0024566:4485-4504 None:intergenic 25.0%
! TACTATGTACATTTCATGTT+AGG - tig0024566:4549-4568 Msa1418260:intron 25.0%
! TTATAGACTCATTACAAATG+AGG + tig0024566:4609-4628 None:intergenic 25.0%
! ATTTGTATTTCCTTTCACTT+CGG - tig0024566:4696-4715 Msa1418260:five_prime_UTR 25.0%
!! AGAAGGTATAATCATCTTAT+GGG - tig0024566:4752-4771 Msa1418260:intron 25.0%
! AACGAAACTATGGATAATAA+TGG - tig0024566:4910-4929 Msa1418260:intron 25.0%
!! ATAATAATGGAATATATGGC+TGG - tig0024566:4923-4942 Msa1418260:intron 25.0%
! ATAAATAGAAGTAACCTACT+AGG + tig0024566:4964-4983 None:intergenic 25.0%
!! TTTTTCTTTTATAACACACG+TGG + tig0024566:5075-5094 None:intergenic 25.0%
!!! TTTGTGTTGCTTTTGAATTG+GGG - tig0024566:1516-1535 Msa1418260:CDS 30.0%
GTGCAATTGTGTAAAAAGTT+TGG - tig0024566:1541-1560 Msa1418260:intron 30.0%
!! AAATTGTGTTGCTTGTGAAA+TGG - tig0024566:1674-1693 Msa1418260:CDS 30.0%
!! AATTGTGTTGCTTGTGAAAT+GGG - tig0024566:1675-1694 Msa1418260:CDS 30.0%
TGAATTTCACTTTAAGCTCA+TGG - tig0024566:1866-1885 Msa1418260:intron 30.0%
! TAACGAGTTGCTGTTAAAAA+TGG - tig0024566:1920-1939 Msa1418260:intron 30.0%
TCATTTGGCGATGTATATAA+AGG - tig0024566:2011-2030 Msa1418260:intron 30.0%
CATTTGGCGATGTATATAAA+GGG - tig0024566:2012-2031 Msa1418260:intron 30.0%
!!! GTAAGTGTTAGTTTTAGAAC+TGG - tig0024566:2034-2053 Msa1418260:intron 30.0%
!! TTCTGTATTGTTGATTCTGA+CGG - tig0024566:2173-2192 Msa1418260:intron 30.0%
! ATTACGGGGATAAAGTTTTT+AGG - tig0024566:2217-2236 Msa1418260:intron 30.0%
AGTTAAATGAACTTTGTCCT+TGG - tig0024566:2368-2387 Msa1418260:intron 30.0%
TTGGATCTTATATGAAAGAC+TGG - tig0024566:2508-2527 Msa1418260:intron 30.0%
TGGATCTTATATGAAAGACT+GGG - tig0024566:2509-2528 Msa1418260:intron 30.0%
CAAAATTACATTACGAGTTG+AGG + tig0024566:2600-2619 None:intergenic 30.0%
! AACCAGTGTTATTACTATTC+GGG - tig0024566:2642-2661 Msa1418260:intron 30.0%
GAACAATGAAAAGCAAAATG+TGG + tig0024566:2688-2707 None:intergenic 30.0%
AGTCTAGAAAGACTTGAATA+TGG - tig0024566:2959-2978 Msa1418260:intron 30.0%
! GTAATTTAGAAAGGTGTGTT+AGG - tig0024566:2985-3004 Msa1418260:intron 30.0%
CATATCATACAAGGAAACTA+AGG - tig0024566:3074-3093 Msa1418260:intron 30.0%
TTATGTTATCCCTATATAGG+AGG - tig0024566:3179-3198 Msa1418260:intron 30.0%
! ACAATAGAATTTTGCTTGCA+AGG - tig0024566:3284-3303 Msa1418260:intron 30.0%
!!! TCTTATTTTCAGGTTTGACA+AGG - tig0024566:3561-3580 Msa1418260:intron 30.0%
TTCCAAATCAATCACTTTGA+TGG + tig0024566:3605-3624 None:intergenic 30.0%
TTCAAGAACATTCCAATTCA+AGG - tig0024566:3658-3677 Msa1418260:intron 30.0%
AATACTTCAGTTCCTTGAAT+TGG + tig0024566:3673-3692 None:intergenic 30.0%
AATTCAAGGAACTGAAGTAT+TGG - tig0024566:3672-3691 Msa1418260:intron 30.0%
AGTTTACTTACTTTACCGAA+GGG - tig0024566:3843-3862 Msa1418260:intron 30.0%
!!! TCTTCATTTTTTAAGGGTGT+TGG + tig0024566:3872-3891 None:intergenic 30.0%
! GGTTTTCAACTAAATGTCAA+AGG + tig0024566:3998-4017 None:intergenic 30.0%
! AACTTTTAGATTGTGCTATC+TGG + tig0024566:4019-4038 None:intergenic 30.0%
AAGTGAAATATGTTGAGGTT+GGG - tig0024566:4103-4122 Msa1418260:intron 30.0%
ACTCAACTACATAAAGGATT+AGG - tig0024566:4141-4160 Msa1418260:intron 30.0%
!! AAATGGGCATTGAAAATTCA+AGG - tig0024566:4212-4231 Msa1418260:intron 30.0%
TAATTTGGCATCCATACAAT+AGG - tig0024566:4431-4450 Msa1418260:intron 30.0%
! GTGAGTACATTTTTGTAGTT+AGG - tig0024566:4641-4660 Msa1418260:CDS 30.0%
AATGTCATCTTCTCTGTAAA+GGG + tig0024566:4722-4741 None:intergenic 30.0%
! CAGAAGGTATAATCATCTTA+TGG - tig0024566:4751-4770 Msa1418260:intron 30.0%
GAGAAAAGAACCATAATACT+CGG + tig0024566:4885-4904 None:intergenic 30.0%
TTCTCAATCAAACGAAACTA+TGG - tig0024566:4900-4919 Msa1418260:intron 30.0%
!! ATTGTGTTGCTTGTGAAATG+GGG - tig0024566:1676-1695 Msa1418260:CDS 35.0%
!! GATTGAATTTGGAGAGTGTT+GGG - tig0024566:1828-1847 Msa1418260:intron 35.0%
!! ATTGAATTTGGAGAGTGTTG+GGG - tig0024566:1829-1848 Msa1418260:intron 35.0%
ACTTTAAGCTCATGGTTGTT+TGG - tig0024566:1874-1893 Msa1418260:intron 35.0%
TTAAAAATGGAGGATCTAGC+AGG - tig0024566:1933-1952 Msa1418260:intron 35.0%
!!! GAAGGCATTTTGATTTTGCA+GGG + tig0024566:2069-2088 None:intergenic 35.0%
GATTTATTGTCAACACTCGA+AGG + tig0024566:2087-2106 None:intergenic 35.0%
TGCACATTGGCAATACAATT+GGG - tig0024566:2124-2143 Msa1418260:intron 35.0%
! TTACATTACGAGTTGAGGTT+TGG + tig0024566:2595-2614 None:intergenic 35.0%
GTTACTTCTAAGCTTACACA+GGG + tig0024566:2625-2644 None:intergenic 35.0%
AAACACGCCTTTGTGTTTAA+GGG + tig0024566:2737-2756 None:intergenic 35.0%
ATTGCAGCCTCAATTAAGAT+AGG - tig0024566:2771-2790 Msa1418260:intron 35.0%
TTTATCACTGTGACTTACTC+AGG - tig0024566:3010-3029 Msa1418260:CDS 35.0%
TGTATGATATGTTGCGCTTT+GGG + tig0024566:3065-3084 None:intergenic 35.0%
TTGTATGATATGTTGCGCTT+TGG + tig0024566:3066-3085 None:intergenic 35.0%
AAAGCGCAACATATCATACA+AGG - tig0024566:3065-3084 Msa1418260:intron 35.0%
CTCCAAATCTCTCTATTTAC+TGG - tig0024566:3490-3509 Msa1418260:intron 35.0%
CATTGTCCATGTCTAACTTA+AGG + tig0024566:3516-3535 None:intergenic 35.0%
TGCCATCAAAGTGATTGATT+TGG - tig0024566:3600-3619 Msa1418260:intron 35.0%
CTTCGGTAAAGTAAGTAAAC+TGG + tig0024566:3844-3863 None:intergenic 35.0%
CAGTTTACTTACTTTACCGA+AGG - tig0024566:3842-3861 Msa1418260:intron 35.0%
AATATCTGCAGGAGTTGTTT+GGG - tig0024566:3905-3924 Msa1418260:intron 35.0%
! GAGTTGTGCTGTCTTTAAAA+AGG - tig0024566:3950-3969 Msa1418260:intron 35.0%
! GCAGGATATGGGAAAATTTT+AGG + tig0024566:4048-4067 None:intergenic 35.0%
! CTTCTTTTGTAAACTGCAAG+TGG - tig0024566:4077-4096 Msa1418260:intron 35.0%
GGAAGAAGTGAAATATGTTG+AGG - tig0024566:4098-4117 Msa1418260:intron 35.0%
GAAGTGAAATATGTTGAGGT+TGG - tig0024566:4102-4121 Msa1418260:intron 35.0%
TACATAAAGGATTAGGACAC+TGG - tig0024566:4148-4167 Msa1418260:intron 35.0%
ACATAAAGGATTAGGACACT+GGG - tig0024566:4149-4168 Msa1418260:intron 35.0%
! CAGACGAAGATTGTTTGTTA+AGG + tig0024566:4251-4270 None:intergenic 35.0%
CGTCTGCAATGTAAATTAGA+AGG - tig0024566:4265-4284 Msa1418260:intron 35.0%
GTGAGGAGTGATGTATAATT+TGG - tig0024566:4416-4435 Msa1418260:intron 35.0%
TGAACTTTATTGATGGAGCA+TGG - tig0024566:4505-4524 Msa1418260:intron 35.0%
TGAACAAATAGCAAAGCATG+TGG - tig0024566:4582-4601 Msa1418260:intron 35.0%
GAACAAATAGCAAAGCATGT+GGG - tig0024566:4583-4602 Msa1418260:intron 35.0%
CAATGTCATCTTCTCTGTAA+AGG + tig0024566:4723-4742 None:intergenic 35.0%
TGACATTGACGATATTCAGA+AGG - tig0024566:4735-4754 Msa1418260:intron 35.0%
CCATAATACTCGGTAATGTA+TGG + tig0024566:4875-4894 None:intergenic 35.0%
CCATACATTACCGAGTATTA+TGG - tig0024566:4872-4891 Msa1418260:intron 35.0%
! ATAATGGAATATATGGCTGG+CGG - tig0024566:4926-4945 Msa1418260:intron 35.0%
ACATTGTTTAAGGACAAGCA+GGG + tig0024566:5036-5055 None:intergenic 35.0%
! GGATTGAATTTGGAGAGTGT+TGG - tig0024566:1827-1846 Msa1418260:intron 40.0%
!! TTGAATTTGGAGAGTGTTGG+GGG - tig0024566:1830-1849 Msa1418260:intron 40.0%
TGGTGTTTCAGATGTGTATG+AGG - tig0024566:1894-1913 Msa1418260:intron 40.0%
! CGAGTTGCTGTTAAAAATGG+AGG - tig0024566:1923-1942 Msa1418260:intron 40.0%
TTCACTTCGTTGGAGCTTAT+TGG - tig0024566:1981-2000 Msa1418260:intron 40.0%
CTTATTGGACAGGGTTCATT+TGG - tig0024566:1996-2015 Msa1418260:intron 40.0%
!!! CGAAGGCATTTTGATTTTGC+AGG + tig0024566:2070-2089 None:intergenic 40.0%
GTGCACATTGGCAATACAAT+TGG - tig0024566:2123-2142 Msa1418260:intron 40.0%
!! TGTATTGTTGATTCTGACGG+TGG - tig0024566:2176-2195 Msa1418260:intron 40.0%
TGACAGTTTGCATCCTCTAA+AGG + tig0024566:2324-2343 None:intergenic 40.0%
TTTGTCCTTGGATCTCAAAG+AGG - tig0024566:2380-2399 Msa1418260:intron 40.0%
GGTTACTTCTAAGCTTACAC+AGG + tig0024566:2626-2645 None:intergenic 40.0%
TTGTTCCAGATAACCACCAA+AGG - tig0024566:2702-2721 Msa1418260:intron 40.0%
CAACAGTCCCTTAAACACAA+AGG - tig0024566:2727-2746 Msa1418260:intron 40.0%
CAAACACGCCTTTGTGTTTA+AGG + tig0024566:2738-2757 None:intergenic 40.0%
TCGATGTAAGATGTCATGAG+TGG - tig0024566:2840-2859 Msa1418260:intron 40.0%
ACAGACATGACACAAATCTG+TGG - tig0024566:2863-2882 Msa1418260:intron 40.0%
CAGACATGACACAAATCTGT+GGG - tig0024566:2864-2883 Msa1418260:intron 40.0%
GTATGATATGTTGCGCTTTG+GGG + tig0024566:3064-3083 None:intergenic 40.0%
!! CAGAGAGTACCTCCTATATA+GGG + tig0024566:3191-3210 None:intergenic 40.0%
!! TCAGAGAGTACCTCCTATAT+AGG + tig0024566:3192-3211 None:intergenic 40.0%
AAAACTGCACTCTGCACATT+AGG + tig0024566:3238-3257 None:intergenic 40.0%
GGCCAGTAAATAGAGAGATT+TGG + tig0024566:3495-3514 None:intergenic 40.0%
!! TACTGGCCTTAAGTTAGACA+TGG - tig0024566:3507-3526 Msa1418260:intron 40.0%
!! ACTGAAGTATTGGCCACATT+AGG - tig0024566:3682-3701 Msa1418260:intron 40.0%
!! CTGAAGTATTGGCCACATTA+GGG - tig0024566:3683-3702 Msa1418260:intron 40.0%
!! TGAAGTATTGGCCACATTAG+GGG - tig0024566:3684-3703 Msa1418260:intron 40.0%
GGTAAGGGATCATTGTTGAT+AGG - tig0024566:3816-3835 Msa1418260:intron 40.0%
GAATATCTGCAGGAGTTGTT+TGG - tig0024566:3904-3923 Msa1418260:intron 40.0%
GCAGTTTACAAAAGAAGACG+AGG + tig0024566:4074-4093 None:intergenic 40.0%
TGTTACCATTCAGACTGTGT+AGG - tig0024566:4290-4309 Msa1418260:intron 40.0%
TGTGTAGGACTTCATATGCA+TGG - tig0024566:4305-4324 Msa1418260:intron 40.0%
CACTCCTCACATGTAGATAT+TGG + tig0024566:4406-4425 None:intergenic 40.0%
ACATCGCAGTACCTATTGTA+TGG + tig0024566:4445-4464 None:intergenic 40.0%
TCATCTTATGGGATTCCTTG+TGG - tig0024566:4763-4782 Msa1418260:intron 40.0%
AGCATTACTGAGCAAGTGAA+AGG + tig0024566:4996-5015 None:intergenic 40.0%
CATTGTTTAAGGACAAGCAG+GGG + tig0024566:5035-5054 None:intergenic 40.0%
CACATTGTTTAAGGACAAGC+AGG + tig0024566:5037-5056 None:intergenic 40.0%
TCTGTGACTGAGAAGATTAC+CGG - tig0024566:5099-5118 Msa1418260:five_prime_UTR 40.0%
AGGAACGAGATTCACTTCGT+TGG - tig0024566:1971-1990 Msa1418260:intron 45.0%
TTCGTTGGAGCTTATTGGAC+AGG - tig0024566:1986-2005 Msa1418260:intron 45.0%
TCGTTGGAGCTTATTGGACA+GGG - tig0024566:1987-2006 Msa1418260:intron 45.0%
GAGTAGATCTAGGTGCACAT+TGG - tig0024566:2111-2130 Msa1418260:intron 45.0%
!! ACAAGCCTCTTTGAGATCCA+AGG + tig0024566:2388-2407 None:intergenic 45.0%
AGACTGGGTTTGATGCAATG+TGG - tig0024566:2524-2543 Msa1418260:intron 45.0%
GGCCCGAATAGTAATAACAC+TGG + tig0024566:2647-2666 None:intergenic 45.0%
TTACTATTCGGGCCCAACAT+TGG - tig0024566:2653-2672 Msa1418260:intron 45.0%
! TTGTGCCTTTGGTGGTTATC+TGG + tig0024566:2710-2729 None:intergenic 45.0%
TTAAGGGACTGTTGTGCCTT+TGG + tig0024566:2721-2740 None:intergenic 45.0%
ACGATTGTGTTCCAGTGATG+TGG - tig0024566:3795-3814 Msa1418260:intron 45.0%
TGTGTTCCAGTGATGTGGTA+AGG - tig0024566:3800-3819 Msa1418260:intron 45.0%
GTGTTCCAGTGATGTGGTAA+GGG - tig0024566:3801-3820 Msa1418260:intron 45.0%
ATGATCCCTTACCACATCAC+TGG + tig0024566:3809-3828 None:intergenic 45.0%
!! TAAGGGTGTTGGATACCCTT+CGG + tig0024566:3861-3880 None:intergenic 45.0%
GAAGTCCTACACAGTCTGAA+TGG + tig0024566:4298-4317 None:intergenic 45.0%
GGCTCCAATATCTACATGTG+AGG - tig0024566:4399-4418 Msa1418260:intron 45.0%
CTGTGACTGAGAAGATTACC+GGG - tig0024566:5100-5119 Msa1418260:five_prime_UTR 45.0%
TGAGAAGATTACCGGGAGAA+GGG - tig0024566:5107-5126 Msa1418260:five_prime_UTR 45.0%
!!! AAAAAAAAACAATATATTTT+TGG + tig0024566:3407-3426 None:intergenic 5.0%
GGATCTAGCAGGTCTAGTTG+AGG - tig0024566:1944-1963 Msa1418260:intron 50.0%
!! AGGAGGTACTCTCTGACACT+TGG - tig0024566:3196-3215 Msa1418260:intron 50.0%
!!! GGGGCGCTGACCAATTTTAT+AGG - tig0024566:3703-3722 Msa1418260:intron 50.0%
AGACGAGGAGAGCAGGATAT+GGG + tig0024566:4059-4078 None:intergenic 50.0%
AAGACGAGGAGAGCAGGATA+TGG + tig0024566:4060-4079 None:intergenic 50.0%
CAAAAGAAGACGAGGAGAGC+AGG + tig0024566:4066-4085 None:intergenic 50.0%
GATTAGGACACTGGGTCAGT+AGG - tig0024566:4157-4176 Msa1418260:intron 50.0%
TGGGTCAGTAGGCAAAAGTC+TGG - tig0024566:4168-4187 Msa1418260:intron 50.0%
CTGTAAAGGGCCGAAGTGAA+AGG + tig0024566:4709-4728 None:intergenic 50.0%
GCATCAACTGTGAAGCCACA+AGG + tig0024566:4781-4800 None:intergenic 50.0%
CTGAGAAGATTACCGGGAGA+AGG - tig0024566:5106-5125 Msa1418260:five_prime_UTR 50.0%
AAGGATTTCCACCCTTCTCC+CGG + tig0024566:5121-5140 None:intergenic 50.0%
GCAGGTCTAGTTGAGGCAAC+AGG - tig0024566:1951-1970 Msa1418260:intron 55.0%
TGGCCGCTCGATCCAATGTT+GGG + tig0024566:2668-2687 None:intergenic 55.0%
AGGGACTGTTGTGCCTTTGG+TGG + tig0024566:2718-2737 None:intergenic 55.0%
ATTGGTCAGCGCCCCTAATG+TGG + tig0024566:3698-3717 None:intergenic 55.0%
GGCTCTGTTGCTGACCTAGT+AGG - tig0024566:4947-4966 Msa1418260:intron 55.0%
GAAGATTACCGGGAGAAGGG+TGG - tig0024566:5110-5129 Msa1418260:five_prime_UTR 55.0%
GGGCCCAACATTGGATCGAG+CGG - tig0024566:2662-2681 Msa1418260:intron 60.0%
GTGGCCGCTCGATCCAATGT+TGG + tig0024566:2669-2688 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0024566 gene 1491 5140 1491 ID=Msa1418260;Name=Msa1418260
tig0024566 mRNA 1491 5140 1491 ID=Msa1418260-mRNA-1;Parent=Msa1418260;Name=Msa1418260-mRNA-1;_AED=0.13;_eAED=0.13;_QI=136|1|0.83|1|0.6|0.5|6|0|118
tig0024566 exon 1491 1541 1491 ID=Msa1418260-mRNA-1:exon:286;Parent=Msa1418260-mRNA-1
tig0024566 exon 1667 1789 1667 ID=Msa1418260-mRNA-1:exon:285;Parent=Msa1418260-mRNA-1
tig0024566 exon 1875 1902 1875 ID=Msa1418260-mRNA-1:exon:284;Parent=Msa1418260-mRNA-1
tig0024566 exon 3002 3058 3002 ID=Msa1418260-mRNA-1:exon:283;Parent=Msa1418260-mRNA-1
tig0024566 exon 4598 4726 4598 ID=Msa1418260-mRNA-1:exon:282;Parent=Msa1418260-mRNA-1
tig0024566 exon 5039 5140 5039 ID=Msa1418260-mRNA-1:exon:281;Parent=Msa1418260-mRNA-1
tig0024566 five_prime_UTR 5039 5140 5039 ID=Msa1418260-mRNA-1:five_prime_utr;Parent=Msa1418260-mRNA-1
tig0024566 five_prime_UTR 4693 4726 4693 ID=Msa1418260-mRNA-1:five_prime_utr;Parent=Msa1418260-mRNA-1
tig0024566 CDS 4598 4692 4598 ID=Msa1418260-mRNA-1:cds;Parent=Msa1418260-mRNA-1
tig0024566 CDS 3002 3058 3002 ID=Msa1418260-mRNA-1:cds;Parent=Msa1418260-mRNA-1
tig0024566 CDS 1875 1902 1875 ID=Msa1418260-mRNA-1:cds;Parent=Msa1418260-mRNA-1
tig0024566 CDS 1667 1789 1667 ID=Msa1418260-mRNA-1:cds;Parent=Msa1418260-mRNA-1
tig0024566 CDS 1491 1541 1491 ID=Msa1418260-mRNA-1:cds;Parent=Msa1418260-mRNA-1
Gene Sequence

>Msa1418260

ATGGAGGATCTAGCAGGTCTAGTTGAGGCAACAGGAACGAGATTCACTTCGTTGGAGCTTATTGGACAGGGTTCATTTGGCGATGTATATAAAGGGTTTGACAAGGAGCTCAACAAAGAAGTTGCCATCAAAGTGATTGATTTGGAAGAATCAGAAGATGACATTGACGATATTCAGAAGGAAATTTCTGTTCTGTCACAATGTCGATGTCCATACATTACCGAGTATTATGGTTCTTTTCTCAATCAAACGAAACTATGGATAATAATGGAATATATGGCTGGCGGCTCTGTTGCTGACCTAAAAAACAATTCTGTGACTGAGAAGATTACCGGGAGAAGGGTGGAAATCCTT

Protein sequence

>Msa1418260

MEDLAGLVEATGTRFTSLELIGQGSFGDVYKGFDKELNKEVAIKVIDLEESEDDIDDIQKEISVLSQCRCPYITEYYGSFLNQTKLWIIMEYMAGGSVADLKNNSVTEKITGRRVEIL