AlfalfaGEDB | Msa0398800

M. sativa cultivar zhongmu-4 / Msa0398800

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398800	XP_003598994.1	91.493	670	46	3	1	664	1	665	0.0	1226

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398800	G7IZA9	91.493	670	46	3	1	664	1	665	0.0	1226

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0242290	Msa0398800	0.800441	1.439012e-48	-8.615850e-47
Msa0398800	Msa0401340	0.801128	1.042090e-48	-8.615850e-47
Msa0398800	Msa0545230	0.801584	8.406320e-49	-8.615850e-47
Msa0398800	Msa0968780	0.802532	5.365609e-49	-8.615850e-47
Msa0398800	Msa1082150	0.808554	2.925475e-50	-8.615850e-47
Msa0398800	Msa1394900	0.813249	2.816014e-51	-8.615850e-47
Msa0398800	Msa1459540	0.813208	2.875973e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398800	MtrunA17_Chr3g0086851	91.493	670	46	3	1	664	1	665	0.0	1226

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0398800	AT5G61040.1	30.520	711	320	20	1	661	1	587	2.87e-68	234
Msa0398800	AT5G08010.1	28.777	695	325	17	1	659	1	561	4.31e-52	189

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Find 146 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTTTCGTCGAGAGAA+AGG	0.426986	3_2:-20804814	None:intergenic
AAACGTAAACTCAGTTCATG+CGG	0.684879	3_2:-20807777	None:intergenic
AAAGACATATTCTTCCATTT+TGG	0.197205	3_2:-20804907	None:intergenic
AAATTTACATCATGCTTGCA+AGG	0.525257	3_2:+20808427	Msa0398800:three_prime_UTR
AAGCAGAACTTGAGAGATTA+GGG	0.317709	3_2:+20806852	Msa0398800:CDS
AAGGAATCTTCTCCCACTAG+AGG	0.603884	3_2:+20807915	Msa0398800:CDS
AAGGTCCGCTTTCACATGAT+TGG	0.363169	3_2:+20808108	Msa0398800:CDS
AAGTTCTTCTCTTGGTTGTT+TGG	0.328480	3_2:+20804050	Msa0398800:five_prime_UTR
AAGTTGTGAATGTGATAATG+AGG	0.660939	3_2:+20808211	Msa0398800:CDS
AATGGTCTACTAACATGCTC+GGG	0.515836	3_2:-20804837	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAGACAAACATTGAAGATAA+CGG	+	chr3_2:20803042-20803061	Msa0398800:five_prime_UTR	30.0%
GTATCCTAGATTTCATTTCA+CGG	+	chr3_2:20803102-20803121	Msa0398800:five_prime_UTR	30.0%
ATTTCATTTCACGGATACTA+AGG	+	chr3_2:20803111-20803130	Msa0398800:five_prime_UTR	30.0%
AAAAAACTCAACCTACTTCA+AGG	-	chr3_2:20803377-20803396	None:intergenic	30.0%
TCTACTGTCAGTGTAAAATT+TGG	+	chr3_2:20803529-20803548	Msa0398800:intron	30.0%
AGTTGATTGTTTACTTTGCT+TGG	+	chr3_2:20803697-20803716	Msa0398800:intron	30.0%
AACCTAACCAACCATAAATA+AGG	-	chr3_2:20803816-20803835	None:intergenic	30.0%
GTTTAGTTAATCAGTGATTG+TGG	+	chr3_2:20803958-20803977	Msa0398800:intron	30.0%
AAACACAAAAATGTAGTTGG+AGG	+	chr3_2:20805068-20805087	Msa0398800:CDS	30.0%
AACACAAAAATGTAGTTGGA+GGG	+	chr3_2:20805069-20805088	Msa0398800:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	20802947	20808509	20802947	ID=Msa0398800;Name=Msa0398800
chr3_2	mRNA	20802947	20808509	20802947	ID=Msa0398800-mRNA-1;Parent=Msa0398800;Name=Msa0398800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=623\|1\|1\|1\|0.5\|0.4\|5\|160\|664
chr3_2	exon	20802947	20803145	20802947	ID=Msa0398800-mRNA-1:exon:4550;Parent=Msa0398800-mRNA-1
chr3_2	exon	20803865	20803976	20803865	ID=Msa0398800-mRNA-1:exon:4551;Parent=Msa0398800-mRNA-1
chr3_2	exon	20804018	20805218	20804018	ID=Msa0398800-mRNA-1:exon:4552;Parent=Msa0398800-mRNA-1
chr3_2	exon	20806504	20806925	20806504	ID=Msa0398800-mRNA-1:exon:4553;Parent=Msa0398800-mRNA-1
chr3_2	exon	20807666	20808509	20807666	ID=Msa0398800-mRNA-1:exon:4554;Parent=Msa0398800-mRNA-1
chr3_2	five_prime_UTR	20802947	20803145	20802947	ID=Msa0398800-mRNA-1:five_prime_utr;Parent=Msa0398800-mRNA-1
chr3_2	five_prime_UTR	20803865	20803976	20803865	ID=Msa0398800-mRNA-1:five_prime_utr;Parent=Msa0398800-mRNA-1
chr3_2	five_prime_UTR	20804018	20804329	20804018	ID=Msa0398800-mRNA-1:five_prime_utr;Parent=Msa0398800-mRNA-1
chr3_2	CDS	20804330	20805218	20804330	ID=Msa0398800-mRNA-1:cds;Parent=Msa0398800-mRNA-1
chr3_2	CDS	20806504	20806925	20806504	ID=Msa0398800-mRNA-1:cds;Parent=Msa0398800-mRNA-1
chr3_2	CDS	20807666	20808349	20807666	ID=Msa0398800-mRNA-1:cds;Parent=Msa0398800-mRNA-1
chr3_2	three_prime_UTR	20808350	20808509	20808350	ID=Msa0398800-mRNA-1:three_prime_utr;Parent=Msa0398800-mRNA-1

Gene Sequence

>Msa0398800

ATGGATTTTTGGCTTGGTGCAGCTGTTGTTGGAGCTGGTTATTTAGGTAAATATTGGAAAAAGAGTTTGGAACATGGTGATAGCTCTTATCATTTGTCTTCAGAGGTTTCAAATTTTGAGAAAGGCGAGTCCTTTATCAGCCCCTTAACCTCCCTCAAACAACCCCGGAGACGTGAAAAGGGAAAAGATGTTTCTTTAGATAGAATGGGTTCGGATGTGAGTTCCGTGGATGGTCCTTCGACAGGAGACGAGGCTTCTTATAGAGGGTTCAATTGTGAAAAAATAAGACATTTTCAGAATTATAATGAGAGTGATTTTCTATCCATATCGAACTTAGCAGTGCCATTATCACCATATGATGATAATTTTAAGGATGGTGCAGATGGAAATGAGCAAAATACGAGTAGTTTTGGCAATCATGGGTTCTTTCGTCCTGAGTTTTCTGCCAAAGTGATTCCTATCCACAACTCTTTCAGTCACAAATCCTTTCTCTCGACGAAACGTTTTCCCGAGCATGTTAGTAGACCATTAAATTCCTTAGAAAGTTGTTTCATGGCTCAGCTATATAAAGAGCATGCCAAAATGGAAGAATATGTCTTTAGTCCTCTTTCATCACCATCTACAACAAGGTTATTTCGTGTTAGTAATGGTAGCCGAATACTGAATAGAGAAAATTGTAGTTTGATCAGTGCATTGACTGGAAGTAAGGATTATAAGCTGCATAAAGCTGGTCGAGAAAAACACAAAAATGTAGTTGGAGGGGTTCCTTCCTTGCCCAAAATTGGATCTTTAAATGATACCAAGATGATGAAACTTGATGCAGTTGATGGACGAAGTCGAAGGTCAAGCTTTTCTGATGACTTGTTTAGTGGAAAACTCACTCAATATGATCCGGCGTTTCTCTTCAGTCTTGGGATTTCTCTTGGGATAATAACTTCCAACATGGCAAATAAAAGAGAAATAGTCAAGATAAGAGAACTGTTGAAGCAGAATGAGAACTTGGTTCAAGATCTACAAGACGAACTCGATATGAAAGATTCGATGACAGTGAAGGAGTTACAAAATGAAAATTATGGTTCACAAGATACATGTGATCATTCCTTCAATGGTAAGGAGCTACATGAATTTTCCCCTGAAAAGCATATTGATAGCTCTCCCAGAGTAGAATGCAAAGAATCATATGATAAAAAGGAACAACAGAGTTCAGAGTCTATGAGCAAAATTGAAGCTGAGCTTGAAGCAGAACTTGAGAGATTAGGGTTGGACATGAATGCGTCAAGCTTGGATAGGAAATTATCCGAGCTTGTTGAGATTGACCCGGAGTTCGTAGCAGATTTTGCGCAAGGTGAGTTTCGAGCTGACACGGTCAATGGAGCAGATGCCAATGTCATCACACCTCTTCCTGCCAACTATGCAGTTTCGCCGCATGAACTGAGTTTACGTTTGCACGAAGTCATACAAAACCAACTCGAAACACGAGTGAAGGAGCTTGAGACAGCTCTTGAAAATAGCCAGATGAAAGTAAAGTCTTTGGAATCTGAACATGATGTTAGTTTCCAAAAGGAATCTTCTCCCACTAGAGGAAACTTAATGATGACTCATAAAGATTGCGACACTATGTCCCAACCCTTAATTCTCAATCTATCAGGCGAAGCTCTTGAAGCATACAATGAAACCTATGAAGAATTAATAAATATGAATGATTCCGAAGACAATTCACCATCAGCCATCATTCATGATAGTGACGACAAAGAAGGTCCGCTTTCACATGATTGGAATGCAACAGTTTTTGAATACGATTTCGCGACAATGTTGGAAGGGCAAAGCTCTAGTGAATTGAATATTAGTGGAGATGAAAGTTGTGAATGTGATAATGAGGAGGTGGAGAGGCTTTTGATAAGGCAAATTGTTGAAAGAACCAAGAAAGGTTCTCCTTTTTTTCAAAATGCAAAAAAGATATTGTATTCTATGGATGAAGATGAACAACAACATTGA

Protein sequence

>Msa0398800

MDFWLGAAVVGAGYLGKYWKKSLEHGDSSYHLSSEVSNFEKGESFISPLTSLKQPRRREKGKDVSLDRMGSDVSSVDGPSTGDEASYRGFNCEKIRHFQNYNESDFLSISNLAVPLSPYDDNFKDGADGNEQNTSSFGNHGFFRPEFSAKVIPIHNSFSHKSFLSTKRFPEHVSRPLNSLESCFMAQLYKEHAKMEEYVFSPLSSPSTTRLFRVSNGSRILNRENCSLISALTGSKDYKLHKAGREKHKNVVGGVPSLPKIGSLNDTKMMKLDAVDGRSRRSSFSDDLFSGKLTQYDPAFLFSLGISLGIITSNMANKREIVKIRELLKQNENLVQDLQDELDMKDSMTVKELQNENYGSQDTCDHSFNGKELHEFSPEKHIDSSPRVECKESYDKKEQQSSESMSKIEAELEAELERLGLDMNASSLDRKLSELVEIDPEFVADFAQGEFRADTVNGADANVITPLPANYAVSPHELSLRLHEVIQNQLETRVKELETALENSQMKVKSLESEHDVSFQKESSPTRGNLMMTHKDCDTMSQPLILNLSGEALEAYNETYEELINMNDSEDNSPSAIIHDSDDKEGPLSHDWNATVFEYDFATMLEGQSSSELNISGDESCECDNEEVERLLIRQIVERTKKGSPFFQNAKKILYSMDEDEQQH*