AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0398800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398800 MtrunA17_Chr3g0086851 91.493 670 46 3 1 664 1 665 0.0 1226
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0398800 AT5G61040.1 30.520 711 320 20 1 661 1 587 2.87e-68 234
Msa0398800 AT5G08010.1 28.777 695 325 17 1 659 1 561 4.31e-52 189

Find 146 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTTAAAGATCCAATTT+TGG 0.143154 3_2:-20805105 None:intergenic
GTTCCTTCCTTGCCCAAAAT+TGG 0.190143 3_2:+20805092 Msa0398800:CDS
AAAGACATATTCTTCCATTT+TGG 0.197205 3_2:-20804907 None:intergenic
GCCTGATAGATTGAGAATTA+AGG 0.220321 3_2:-20807982 None:intergenic
CAACTTTCTAAGGAATTTAA+TGG 0.229860 3_2:-20804855 None:intergenic
TTGTTATCTAGCGGCTTTAT+AGG 0.265144 3_2:+20804130 Msa0398800:five_prime_UTR
TTCAGTCTTGGGATTTCTCT+TGG 0.270448 3_2:+20806518 Msa0398800:CDS
CAAAGAATCATATGATAAAA+AGG 0.284476 3_2:+20806784 Msa0398800:CDS
TTCCTTAGAAAGTTGTTTCA+TGG 0.286371 3_2:+20804863 Msa0398800:CDS
CATATTTATTAATTCTTCAT+AGG 0.286635 3_2:-20808030 None:intergenic
GAGCAAAATACGAGTAGTTT+TGG 0.297577 3_2:+20804720 Msa0398800:CDS
CGGCGTTTCTCTTCAGTCTT+GGG 0.311500 3_2:+20806507 Msa0398800:CDS
CCTGATAGATTGAGAATTAA+GGG 0.312463 3_2:-20807981 None:intergenic
AAGCAGAACTTGAGAGATTA+GGG 0.317709 3_2:+20806852 Msa0398800:CDS
CTGGTTATTTAGGTAAATAT+TGG 0.318981 3_2:+20804364 Msa0398800:CDS
GGGTTGTTTGAGGGAGGTTA+AGG 0.326665 3_2:-20804472 None:intergenic
TTATCATCATATGGTGATAA+TGG 0.327912 3_2:-20804672 None:intergenic
AAGTTCTTCTCTTGGTTGTT+TGG 0.328480 3_2:+20804050 Msa0398800:five_prime_UTR
GAGTTACAAAATGAAAATTA+TGG 0.330169 3_2:+20806668 Msa0398800:CDS
CCGGCGTTTCTCTTCAGTCT+TGG 0.340040 3_2:+20806506 Msa0398800:CDS
CCAGATGAAAGTAAAGTCTT+TGG 0.340166 3_2:+20807866 Msa0398800:CDS
AGCCATGAAACAACTTTCTA+AGG 0.343642 3_2:-20804865 None:intergenic
GTTGTTGGAGCTGGTTATTT+AGG 0.347130 3_2:+20804354 Msa0398800:CDS
CCCTTAATTCTCAATCTATC+AGG 0.348267 3_2:+20807981 Msa0398800:CDS
CCAAAGACTTTACTTTCATC+TGG 0.358080 3_2:-20807866 None:intergenic
CGAAATAACCTTGTTGTAGA+TGG 0.359330 3_2:-20804945 None:intergenic
AAGGTCCGCTTTCACATGAT+TGG 0.363169 3_2:+20808108 Msa0398800:CDS
TAGTGGGAGAAGATTCCTTT+TGG 0.364922 3_2:-20807911 None:intergenic
TGGCTTGGTGCAGCTGTTGT+TGG 0.365108 3_2:+20804339 Msa0398800:CDS
TGCATCAAGTTTCATCATCT+TGG 0.366409 3_2:-20805129 None:intergenic
AGATGTTTCTTTAGATAGAA+TGG 0.368646 3_2:+20804515 Msa0398800:CDS
GGTGCAGCTGTTGTTGGAGC+TGG 0.377602 3_2:+20804345 Msa0398800:CDS
GGAGGTTAAGGGGCTGATAA+AGG 0.380620 3_2:-20804460 None:intergenic
ATGTAGCTCCTTACCATTGA+AGG 0.383984 3_2:-20806714 None:intergenic
GAAGCAGAACTTGAGAGATT+AGG 0.386686 3_2:+20806851 Msa0398800:CDS
GCAACTTGTAGTGTAGAGTT+TGG 0.387624 3_2:+20804096 Msa0398800:five_prime_UTR
ATATAAAGAGCATGCCAAAA+TGG 0.389469 3_2:+20804893 Msa0398800:CDS
AGTGGAAAACTCACTCAATA+TGG 0.390330 3_2:+20805197 Msa0398800:CDS
TTCTTTAGATAGAATGGGTT+CGG 0.391332 3_2:+20804521 Msa0398800:CDS
TTCATGGAAAGTTCTTCTCT+TGG 0.392527 3_2:+20804042 Msa0398800:five_prime_UTR
TCAGTCTTGGGATTTCTCTT+GGG 0.395373 3_2:+20806519 Msa0398800:CDS
TGATTCTTTGCATTCTACTC+TGG 0.395507 3_2:-20806771 None:intergenic
TGGCACTGCTAAGTTCGATA+TGG 0.400293 3_2:-20804652 None:intergenic
TTGAAGGGGTTTGATTTGAT+TGG 0.404334 3_2:+20803925 Msa0398800:five_prime_UTR
ACGTCTCCGGGGTTGTTTGA+GGG 0.414797 3_2:-20804481 None:intergenic
GGTTGTTTGAGGGAGGTTAA+GGG 0.418224 3_2:-20804471 None:intergenic
ATTTCATTTCACGGATACTA+AGG 0.421619 3_2:+20803111 Msa0398800:five_prime_UTR
CACGTCTCCGGGGTTGTTTG+AGG 0.424022 3_2:-20804482 None:intergenic
AAAACGTTTCGTCGAGAGAA+AGG 0.426986 3_2:-20804814 None:intergenic
TCCTTAAAATTATCATCATA+TGG 0.439015 3_2:-20804681 None:intergenic
ATGAAACTTGATGCAGTTGA+TGG 0.443566 3_2:+20805137 Msa0398800:CDS
CAGTGCATTGACTGGAAGTA+AGG 0.443744 3_2:+20805016 Msa0398800:CDS
AGATTAGAGTGGTGAATTGA+AGG 0.444339 3_2:+20803909 Msa0398800:five_prime_UTR
ACGATTGATACCAGAGTTAG+TGG 0.448243 3_2:+20804287 Msa0398800:five_prime_UTR
TCTAGTGAATTGAATATTAG+TGG 0.449769 3_2:+20808182 Msa0398800:CDS
CTTGTAGTGTAGAGTTTGGT+TGG 0.449943 3_2:+20804100 Msa0398800:five_prime_UTR
GGAGACGAGGCTTCTTATAG+AGG 0.450752 3_2:+20804573 Msa0398800:CDS
ATTGCTACCACTTGAGAAGT+AGG 0.452387 3_2:+20803880 Msa0398800:five_prime_UTR
GATGTTTCTTTAGATAGAAT+GGG 0.454752 3_2:+20804516 Msa0398800:CDS
GATTCTTTGCATTCTACTCT+GGG 0.455473 3_2:-20806770 None:intergenic
GATTAGAGTGGTGAATTGAA+GGG 0.457976 3_2:+20803910 Msa0398800:five_prime_UTR
GTATCCGTGAAATGAAATCT+AGG 0.459368 3_2:-20803106 None:intergenic
TTTCGAGCTGACACGGTCAA+TGG 0.462204 3_2:+20807705 Msa0398800:CDS
CAACCCCGGAGACGTGAAAA+GGG 0.464778 3_2:+20804489 Msa0398800:CDS
ATTGTTGAAAGAACCAAGAA+AGG 0.468316 3_2:+20808260 Msa0398800:CDS
GTATCCTAGATTTCATTTCA+CGG 0.468370 3_2:+20803102 Msa0398800:five_prime_UTR
GTTGTTTGAGGGAGGTTAAG+GGG 0.471528 3_2:-20804470 None:intergenic
CCTTCACTCGTGTTTCGAGT+TGG 0.476018 3_2:-20807818 None:intergenic
GCAAAATCTGCTACGAACTC+CGG 0.482413 3_2:-20807672 None:intergenic
TGTTGATAATTGAAAGAAAG+AGG 0.484934 3_2:+20804073 Msa0398800:five_prime_UTR
ATGCGGCGAAACTGCATAGT+TGG 0.487663 3_2:-20807760 None:intergenic
CTCTTATCATTTGTCTTCAG+AGG 0.488751 3_2:+20804413 Msa0398800:CDS
ACATGTGATCATTCCTTCAA+TGG 0.489917 3_2:+20806701 Msa0398800:CDS
ACAACCCCGGAGACGTGAAA+AGG 0.492826 3_2:+20804488 Msa0398800:CDS
TAATGGTCTACTAACATGCT+CGG 0.495493 3_2:-20804838 None:intergenic
TCCGTGGATGGTCCTTCGAC+AGG 0.497077 3_2:+20804552 Msa0398800:CDS
CATCATTAAGTTTCCTCTAG+TGG 0.497429 3_2:-20807928 None:intergenic
TAGATTGAGAATTAAGGGTT+GGG 0.498887 3_2:-20807976 None:intergenic
CTGGTATCAATCGTGGATCA+AGG 0.506901 3_2:-20804278 None:intergenic
ATCATTAAGTTTCCTCTAGT+GGG 0.508525 3_2:-20807927 None:intergenic
GGCTGATGGTGAATTGTCTT+CGG 0.512782 3_2:-20808060 None:intergenic
CAAAATCTGCTACGAACTCC+GGG 0.513340 3_2:-20807671 None:intergenic
GTTGAAGCAGAATGAGAACT+TGG 0.515778 3_2:+20806595 Msa0398800:CDS
AATGGTCTACTAACATGCTC+GGG 0.515836 3_2:-20804837 None:intergenic
ACATGATGTTAGTTTCCAAA+AGG 0.517230 3_2:+20807896 Msa0398800:CDS
AAATTTACATCATGCTTGCA+AGG 0.525257 3_2:+20808427 Msa0398800:three_prime_UTR
CACGAAGTATTGTCGAATCT+AGG 0.526436 3_2:-20803080 None:intergenic
ATACGATTTCGCGACAATGT+TGG 0.527511 3_2:+20808148 Msa0398800:CDS
TGATCATTCCTTCAATGGTA+AGG 0.528000 3_2:+20806706 Msa0398800:CDS
GATTATAAGCTGCATAAAGC+TGG 0.528729 3_2:+20805038 Msa0398800:CDS
GGACATGAATGCGTCAAGCT+TGG 0.530275 3_2:+20806877 Msa0398800:CDS
ATTAGAGTGGTGAATTGAAG+GGG 0.532557 3_2:+20803911 Msa0398800:five_prime_UTR
ACTGCATAGTTGGCAGGAAG+AGG 0.537017 3_2:-20807750 None:intergenic
ATAGATTGAGAATTAAGGGT+TGG 0.537246 3_2:-20807977 None:intergenic
AGGTTATTTCGTGTTAGTAA+TGG 0.543274 3_2:+20804957 Msa0398800:CDS
TCGGATGTGAGTTCCGTGGA+TGG 0.543884 3_2:+20804540 Msa0398800:CDS
GGCGAAACTGCATAGTTGGC+AGG 0.545571 3_2:-20807756 None:intergenic
CTATAGCAGCACTGTAGCAT+AGG 0.546159 3_2:+20804231 Msa0398800:five_prime_UTR
TGAATGTGATAATGAGGAGG+TGG 0.547622 3_2:+20808217 Msa0398800:CDS
GTGATAATGAGGAGGTGGAG+AGG 0.548162 3_2:+20808222 Msa0398800:CDS
AGTTTGATCAGTGCATTGAC+TGG 0.553765 3_2:+20805008 Msa0398800:CDS
GTTGATAATTGAAAGAAAGA+GGG 0.556062 3_2:+20804074 Msa0398800:five_prime_UTR
ATCACTTTGGCAGAAAACTC+AGG 0.564823 3_2:-20804762 None:intergenic
CAGACAAACATTGAAGATAA+CGG 0.571610 3_2:+20803042 Msa0398800:five_prime_UTR
GTCGTCACTATCATGAATGA+TGG 0.571660 3_2:-20808081 None:intergenic
AGAACTTGAGAGATTAGGGT+TGG 0.577115 3_2:+20806856 Msa0398800:CDS
GGTACAGTGTTGTTATCTAG+CGG 0.577307 3_2:+20804121 Msa0398800:five_prime_UTR
CATGATAGTGACGACAAAGA+AGG 0.582628 3_2:+20808089 Msa0398800:CDS
TTCAGAACCTACTTCTCAAG+TGG 0.586312 3_2:-20803887 None:intergenic
TCCTGTCGAAGGACCATCCA+CGG 0.586356 3_2:-20804553 None:intergenic
TATGCTTACCTCAACAAGCT+CGG 0.589234 3_2:-20806912 None:intergenic
AGGTGAGTTTCGAGCTGACA+CGG 0.589383 3_2:+20807698 Msa0398800:CDS
GAAATTATCCGAGCTTGTTG+AGG 0.590101 3_2:+20806904 Msa0398800:CDS
TACAAAGTGTTGTCAATCAA+CGG 0.590301 3_2:+20804208 Msa0398800:five_prime_UTR
ATTTGTGACTGAAAGAGTTG+TGG 0.592254 3_2:-20804791 None:intergenic
ACTCTCACATCCACTAACTC+TGG 0.592635 3_2:-20804297 None:intergenic
CTTTGTACTGACACGTATCA+CGG 0.595311 3_2:-20804192 None:intergenic
CCAACTCGAAACACGAGTGA+AGG 0.597034 3_2:+20807818 Msa0398800:CDS
GAAGCCTCGTCTCCTGTCGA+AGG 0.597469 3_2:-20804564 None:intergenic
TCTCCGGGGTTGTTTGAGGG+AGG 0.601668 3_2:-20804478 None:intergenic
GTAGGTTCTGAAGATTAGAG+TGG 0.603552 3_2:+20803898 Msa0398800:five_prime_UTR
AAGGAATCTTCTCCCACTAG+AGG 0.603884 3_2:+20807915 Msa0398800:CDS
TGAATGCGTCAAGCTTGGAT+AGG 0.606664 3_2:+20806882 Msa0398800:CDS
GATTTCGCGACAATGTTGGA+AGG 0.608266 3_2:+20808152 Msa0398800:CDS
GTTGTGGATAGGAATCACTT+TGG 0.608512 3_2:-20804775 None:intergenic
GCATTCCAATCATGTGAAAG+CGG 0.615925 3_2:-20808113 None:intergenic
GAGACGAGGCTTCTTATAGA+GGG 0.619106 3_2:+20804574 Msa0398800:CDS
GTTGTAGATGGTGATGAAAG+AGG 0.619822 3_2:-20804933 None:intergenic
ATTTCGCGACAATGTTGGAA+GGG 0.624496 3_2:+20808153 Msa0398800:CDS
ACTAACTCTGGTATCAATCG+TGG 0.624716 3_2:-20804285 None:intergenic
GAAAGATTCGATGACAGTGA+AGG 0.627956 3_2:+20806646 Msa0398800:CDS
TGACTGAAAGAGTTGTGGAT+AGG 0.628996 3_2:-20804786 None:intergenic
CCAAGACTGAAGAGAAACGC+CGG 0.633812 3_2:-20806506 None:intergenic
TAACCTCCCTCAAACAACCC+CGG 0.642935 3_2:+20804475 Msa0398800:CDS
CTATCATGAATGATGGCTGA+TGG 0.644869 3_2:-20808074 None:intergenic
TGGTCCTTCGACAGGAGACG+AGG 0.650659 3_2:+20804560 Msa0398800:CDS
AGGAAGAGGTGTGATGACAT+TGG 0.654885 3_2:-20807736 None:intergenic
GTTAGTGGATGTGAGAGTGA+CGG 0.658483 3_2:+20804302 Msa0398800:five_prime_UTR
AAGTTGTGAATGTGATAATG+AGG 0.660939 3_2:+20808211 Msa0398800:CDS
TTTCATCACCATCTACAACA+AGG 0.679672 3_2:+20804937 Msa0398800:CDS
GAAGTATTGTCGAATCTAGG+AGG 0.683572 3_2:-20803077 None:intergenic
AAACGTAAACTCAGTTCATG+CGG 0.684879 3_2:-20807777 None:intergenic
GGGTTCGGATGTGAGTTCCG+TGG 0.684920 3_2:+20804536 Msa0398800:CDS
TGGGATAATAACTTCCAACA+TGG 0.689562 3_2:+20806538 Msa0398800:CDS
CAGTTGATGGACGAAGTCGA+AGG 0.702830 3_2:+20805150 Msa0398800:CDS
TTGTGAATGTGATAATGAGG+AGG 0.705699 3_2:+20808214 Msa0398800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGTTGATTTTTTTTTTT+TGG + chr3_2:20803400-20803419 Msa0398800:intron 10.0%
!!! TTAGTTGATTTTTTTTTTTT+GGG + chr3_2:20803401-20803420 Msa0398800:intron 10.0%
!! TAATATCTTAAAAATATTGA+AGG - chr3_2:20806108-20806127 None:intergenic 10.0%
!! TAATATGAACTCTATATATA+AGG - chr3_2:20807120-20807139 None:intergenic 15.0%
!! CATATTTATTAATTCTTCAT+AGG - chr3_2:20808033-20808052 None:intergenic 15.0%
!!! TTTTTTGCATTTTGAAAAAA+AGG - chr3_2:20808290-20808309 None:intergenic 15.0%
!! AAAAAAGATATTGTATTCTA+TGG + chr3_2:20808304-20808323 Msa0398800:CDS 15.0%
!!! TTTTGATTGGTTTTGAAAAA+TGG + chr3_2:20803293-20803312 Msa0398800:intron 20.0%
!!! TTTGATTGGTTTTGAAAAAT+GGG + chr3_2:20803294-20803313 Msa0398800:intron 20.0%
!!! TTTTTTTTTTTTGGGATGTT+TGG + chr3_2:20803409-20803428 Msa0398800:intron 20.0%
!!! ATGTTTTGATTTGTCATAAA+AGG + chr3_2:20803490-20803509 Msa0398800:intron 20.0%
!!! TGTTTTGATTTGTCATAAAA+GGG + chr3_2:20803491-20803510 Msa0398800:intron 20.0%
!! AAAAAACTAAAACTATTCCA+AGG - chr3_2:20803557-20803576 None:intergenic 20.0%
!!! TTGGAATAGTTTTAGTTTTT+TGG + chr3_2:20803556-20803575 Msa0398800:intron 20.0%
!!! TGGAATAGTTTTAGTTTTTT+GGG + chr3_2:20803557-20803576 Msa0398800:intron 20.0%
!!! GTTTTTTTTTTACTGATTCA+TGG + chr3_2:20804026-20804045 Msa0398800:five_prime_UTR 20.0%
!! TAAATATTGGAAAAAGAGTT+TGG + chr3_2:20804377-20804396 Msa0398800:CDS 20.0%
!!! ACCATATGATGATAATTTTA+AGG + chr3_2:20804680-20804699 Msa0398800:CDS 20.0%
!! TCCTTAAAATTATCATCATA+TGG - chr3_2:20804684-20804703 None:intergenic 20.0%
!!! TATGATGATAATTTTAAGGA+TGG + chr3_2:20804684-20804703 Msa0398800:CDS 20.0%
!!! AATTTTCTCTATTCAGTATT+CGG - chr3_2:20804986-20805005 None:intergenic 20.0%
!!! TCATTTAAAGATCCAATTTT+GGG - chr3_2:20805107-20805126 None:intergenic 20.0%
!!! ATCATTTAAAGATCCAATTT+TGG - chr3_2:20805108-20805127 None:intergenic 20.0%
!!! AAAAGAAAGAGTTCTAAAAA+AGG - chr3_2:20805403-20805422 None:intergenic 20.0%
!! GAAAAATTGTAATGAAATCT+TGG + chr3_2:20805853-20805872 Msa0398800:intron 20.0%
!!! TTGTAATTTTGATTAACTCA+AGG - chr3_2:20806186-20806205 None:intergenic 20.0%
!! GAGTTACAAAATGAAAATTA+TGG + chr3_2:20806668-20806687 Msa0398800:CDS 20.0%
!! CAAAGAATCATATGATAAAA+AGG + chr3_2:20806784-20806803 Msa0398800:CDS 20.0%
!!! TTCTTAGTTTTTCTTTGTTT+AGG + chr3_2:20807009-20807028 Msa0398800:intron 20.0%
!!! TCTTAGTTTTTCTTTGTTTA+GGG + chr3_2:20807010-20807029 Msa0398800:intron 20.0%
!! ATGATAGAAATTTCATAGAA+AGG + chr3_2:20807065-20807084 Msa0398800:intron 20.0%
!!! TTTTTTCATATCACATAACT+AGG - chr3_2:20807186-20807205 None:intergenic 20.0%
!! AGTTATGTGATATGAAAAAA+TGG + chr3_2:20807186-20807205 Msa0398800:intron 20.0%
!! AGAACAAATAAGTATATGTA+CGG - chr3_2:20807390-20807409 None:intergenic 20.0%
!!! CCATAAAAAAATTCTTTTTC+CGG + chr3_2:20807544-20807563 Msa0398800:intron 20.0%
!!! ATTGATATCATCTAGTTTTT+AGG + chr3_2:20808345-20808364 Msa0398800:exon 20.0%
!!! TGATGTAAATTTTGAAACAA+GGG - chr3_2:20808419-20808438 None:intergenic 20.0%
!!! ATGATGTAAATTTTGAAACA+AGG - chr3_2:20808420-20808439 None:intergenic 20.0%
! TCTGACATTGAAGAAAAAAA+AGG - chr3_2:20803207-20803226 None:intergenic 25.0%
! TTAGTGTAAGAAGAAAATGT+TGG + chr3_2:20803262-20803281 Msa0398800:intron 25.0%
! TAGTGTAAGAAGAAAATGTT+GGG + chr3_2:20803263-20803282 Msa0398800:intron 25.0%
! TCTACTTTCAATGTGAAATT+TGG + chr3_2:20803349-20803368 Msa0398800:intron 25.0%
!!! GGAATAGTTTTAGTTTTTTG+GGG + chr3_2:20803558-20803577 Msa0398800:intron 25.0%
!!! GAATAGTTTTAGTTTTTTGG+GGG + chr3_2:20803559-20803578 Msa0398800:intron 25.0%
!!! AATAGTTTTAGTTTTTTGGG+GGG + chr3_2:20803560-20803579 Msa0398800:intron 25.0%
!! TGTTTCTTGTTCCTTATTTA+TGG + chr3_2:20803802-20803821 Msa0398800:intron 25.0%
!!! GTTGTTTGATTTTGTTTTTC+AGG + chr3_2:20803843-20803862 Msa0398800:intron 25.0%
!!! TGTTGATAATTGAAAGAAAG+AGG + chr3_2:20804073-20804092 Msa0398800:five_prime_UTR 25.0%
!!! GTTGATAATTGAAAGAAAGA+GGG + chr3_2:20804074-20804093 Msa0398800:five_prime_UTR 25.0%
! CTGGTTATTTAGGTAAATAT+TGG + chr3_2:20804364-20804383 Msa0398800:CDS 25.0%
! AGATGTTTCTTTAGATAGAA+TGG + chr3_2:20804515-20804534 Msa0398800:CDS 25.0%
! GATGTTTCTTTAGATAGAAT+GGG + chr3_2:20804516-20804535 Msa0398800:CDS 25.0%
! TTATCATCATATGGTGATAA+TGG - chr3_2:20804675-20804694 None:intergenic 25.0%
!! CAACTTTCTAAGGAATTTAA+TGG - chr3_2:20804858-20804877 None:intergenic 25.0%
!! AAAGACATATTCTTCCATTT+TGG - chr3_2:20804910-20804929 None:intergenic 25.0%
! GAAAAACACAAAAATGTAGT+TGG + chr3_2:20805065-20805084 Msa0398800:CDS 25.0%
! AAACATTTCAAACACAACAT+AGG - chr3_2:20805255-20805274 None:intergenic 25.0%
!!! TTGCAATATAACGGATTTTT+AGG - chr3_2:20805348-20805367 None:intergenic 25.0%
! TATTTAAGCTGTTTAGTTAC+TGG - chr3_2:20805580-20805599 None:intergenic 25.0%
! ATAATTTCCTCAAGAATAAC+AGG - chr3_2:20805766-20805785 None:intergenic 25.0%
! ATAGAATGAAAAGAAGTCTA+TGG - chr3_2:20805802-20805821 None:intergenic 25.0%
!!! TTTTGCTTTTTAACTGGTTT+AGG + chr3_2:20806081-20806100 Msa0398800:intron 25.0%
!!! TGTTTTTTCGTTAGTTAGTT+TGG + chr3_2:20806251-20806270 Msa0398800:intron 25.0%
!!! TTTTTCTTTGTTTAGGGTTT+AGG + chr3_2:20807016-20807035 Msa0398800:intron 25.0%
!!! TTTTCTTTGTTTAGGGTTTA+GGG + chr3_2:20807017-20807036 Msa0398800:intron 25.0%
! TTCATAGAAAGGAATGAAAA+TGG + chr3_2:20807076-20807095 Msa0398800:intron 25.0%
! TAAGGCATATAAATCAGAAA+GGG - chr3_2:20807102-20807121 None:intergenic 25.0%
! ATAAGGCATATAAATCAGAA+AGG - chr3_2:20807103-20807122 None:intergenic 25.0%
!!! GATATGAAAAAATGGATTGT+TGG + chr3_2:20807194-20807213 Msa0398800:intron 25.0%
! CATATAATTTAGTGCATGTT+TGG + chr3_2:20807250-20807269 Msa0398800:intron 25.0%
! CAAAATAAGGCATGAAATAT+TGG - chr3_2:20807489-20807508 None:intergenic 25.0%
! TAGAACTTCAAAGCAAAATA+AGG - chr3_2:20807502-20807521 None:intergenic 25.0%
!!! CCGGAAAAAGAATTTTTTTA+TGG - chr3_2:20807547-20807566 None:intergenic 25.0%
! TCTAGTGAATTGAATATTAG+TGG + chr3_2:20808182-20808201 Msa0398800:CDS 25.0%
CAGACAAACATTGAAGATAA+CGG + chr3_2:20803042-20803061 Msa0398800:five_prime_UTR 30.0%
GTATCCTAGATTTCATTTCA+CGG + chr3_2:20803102-20803121 Msa0398800:five_prime_UTR 30.0%
ATTTCATTTCACGGATACTA+AGG + chr3_2:20803111-20803130 Msa0398800:five_prime_UTR 30.0%
AAAAAACTCAACCTACTTCA+AGG - chr3_2:20803377-20803396 None:intergenic 30.0%
!!! TTTTTGGGATGTTTGGATTT+AGG + chr3_2:20803416-20803435 Msa0398800:intron 30.0%
!!! TTTTGGGATGTTTGGATTTA+GGG + chr3_2:20803417-20803436 Msa0398800:intron 30.0%
!! TCATAAAAGGGTTTTGTAGT+GGG + chr3_2:20803503-20803522 Msa0398800:intron 30.0%
TCTACTGTCAGTGTAAAATT+TGG + chr3_2:20803529-20803548 Msa0398800:intron 30.0%
AGTTGATTGTTTACTTTGCT+TGG + chr3_2:20803697-20803716 Msa0398800:intron 30.0%
! TCTTGTTCCTTATTTATGGT+TGG + chr3_2:20803806-20803825 Msa0398800:intron 30.0%
! TTCCTTATTTATGGTTGGTT+AGG + chr3_2:20803811-20803830 Msa0398800:intron 30.0%
AACCTAACCAACCATAAATA+AGG - chr3_2:20803816-20803835 None:intergenic 30.0%
GTTTAGTTAATCAGTGATTG+TGG + chr3_2:20803958-20803977 Msa0398800:intron 30.0%
!!! TGATTGTGGTTTTGTTTTCA+TGG + chr3_2:20803972-20803991 Msa0398800:intron 30.0%
!!! TGGTTTTGTTTTCATGGAAA+TGG + chr3_2:20803978-20803997 Msa0398800:intron 30.0%
!! TACAAAGTGTTGTCAATCAA+CGG + chr3_2:20804208-20804227 Msa0398800:five_prime_UTR 30.0%
!! TGACGGTAAAAATGGATTTT+TGG + chr3_2:20804319-20804338 Msa0398800:exon 30.0%
!!! GTAAAAATGGATTTTTGGCT+TGG + chr3_2:20804324-20804343 Msa0398800:exon 30.0%
!! GAGGTTTCAAATTTTGAGAA+AGG + chr3_2:20804432-20804451 Msa0398800:CDS 30.0%
! TTCTTTAGATAGAATGGGTT+CGG + chr3_2:20804521-20804540 Msa0398800:CDS 30.0%
! TTCCTTAGAAAGTTGTTTCA+TGG + chr3_2:20804863-20804882 Msa0398800:CDS 30.0%
! ATATAAAGAGCATGCCAAAA+TGG + chr3_2:20804893-20804912 Msa0398800:CDS 30.0%
! AGGTTATTTCGTGTTAGTAA+TGG + chr3_2:20804957-20804976 Msa0398800:CDS 30.0%
AAACACAAAAATGTAGTTGG+AGG + chr3_2:20805068-20805087 Msa0398800:CDS 30.0%
AACACAAAAATGTAGTTGGA+GGG + chr3_2:20805069-20805088 Msa0398800:CDS 30.0%
!!! TTTTCTGATGACTTGTTTAG+TGG + chr3_2:20805179-20805198 Msa0398800:CDS 30.0%
! CTCATTTTCCAGCAATATAA+AGG - chr3_2:20805295-20805314 None:intergenic 30.0%
CTTTATATTGCTGGAAAATG+AGG + chr3_2:20805293-20805312 Msa0398800:intron 30.0%
CTAAACAGCTTAAATATAGC+TGG + chr3_2:20805584-20805603 Msa0398800:intron 30.0%
!!! AAAGCGTTTTGCTTTTTAAC+TGG + chr3_2:20806075-20806094 Msa0398800:intron 30.0%
TACTAACGAAAGATACATTC+AGG + chr3_2:20806316-20806335 Msa0398800:intron 30.0%
CATTGAGTAAATAGTCACTT+TGG - chr3_2:20806398-20806417 None:intergenic 30.0%
!! TTCTCTTTTATTTGCCATGT+TGG - chr3_2:20806555-20806574 None:intergenic 30.0%
! AGCTATCAATATGCTTTTCA+GGG - chr3_2:20806748-20806767 None:intergenic 30.0%
GTTCTACTTCTAGTAGAAAT+TGG + chr3_2:20807405-20807424 Msa0398800:intron 30.0%
TCTAGTAGAAATTGGAATTG+TGG + chr3_2:20807413-20807432 Msa0398800:intron 30.0%
! TTTTGTTCCATTGCTTCTTT+TGG + chr3_2:20807586-20807605 Msa0398800:intron 30.0%
ATTTGAACCAAAAGAAGCAA+TGG - chr3_2:20807596-20807615 None:intergenic 30.0%
ACAATTCTTAAGTGTGACAA+TGG + chr3_2:20807618-20807637 Msa0398800:intron 30.0%
CAATTCTTAAGTGTGACAAT+GGG + chr3_2:20807619-20807638 Msa0398800:intron 30.0%
! CAAATTTTTGTAGATTGACC+CGG + chr3_2:20807653-20807672 Msa0398800:intron 30.0%
! ACATGATGTTAGTTTCCAAA+AGG + chr3_2:20807896-20807915 Msa0398800:CDS 30.0%
TAGATTGAGAATTAAGGGTT+GGG - chr3_2:20807979-20807998 None:intergenic 30.0%
ATAGATTGAGAATTAAGGGT+TGG - chr3_2:20807980-20807999 None:intergenic 30.0%
CCTGATAGATTGAGAATTAA+GGG - chr3_2:20807984-20808003 None:intergenic 30.0%
! AAGTTGTGAATGTGATAATG+AGG + chr3_2:20808211-20808230 Msa0398800:CDS 30.0%
ATTGTTGAAAGAACCAAGAA+AGG + chr3_2:20808260-20808279 Msa0398800:CDS 30.0%
AAAAAAAGGAGAACCTTTCT+TGG - chr3_2:20808276-20808295 None:intergenic 30.0%
!!! CATCTAGTTTTTAGGAATGT+AGG + chr3_2:20808353-20808372 Msa0398800:three_prime_UTR 30.0%
AAATTTACATCATGCTTGCA+AGG + chr3_2:20808427-20808446 Msa0398800:three_prime_UTR 30.0%
GTATCCGTGAAATGAAATCT+AGG - chr3_2:20803109-20803128 None:intergenic 35.0%
!!! GTTGGGTCATTAGTTTTGAT+TGG + chr3_2:20803280-20803299 Msa0398800:intron 35.0%
!! AAATGGGTTTTCCTCAGAAA+AGG + chr3_2:20803310-20803329 Msa0398800:intron 35.0%
!! AATGGGTTTTCCTCAGAAAA+GGG + chr3_2:20803311-20803330 Msa0398800:intron 35.0%
! GAAATTTGGTTCCTTGAAGT+AGG + chr3_2:20803363-20803382 Msa0398800:intron 35.0%
!! GGCATGATTATTTCTGTCAT+TGG + chr3_2:20803438-20803457 Msa0398800:intron 35.0%
!! GTCATAAAAGGGTTTTGTAG+TGG + chr3_2:20803502-20803521 Msa0398800:intron 35.0%
!! CATAAAAGGGTTTTGTAGTG+GGG + chr3_2:20803504-20803523 Msa0398800:intron 35.0%
! CAGTGTAAAATTTGGTTCCT+TGG + chr3_2:20803537-20803556 Msa0398800:intron 35.0%
AGATTAGAGTGGTGAATTGA+AGG + chr3_2:20803909-20803928 Msa0398800:five_prime_UTR 35.0%
GATTAGAGTGGTGAATTGAA+GGG + chr3_2:20803910-20803929 Msa0398800:five_prime_UTR 35.0%
ATTAGAGTGGTGAATTGAAG+GGG + chr3_2:20803911-20803930 Msa0398800:five_prime_UTR 35.0%
!! TTGAAGGGGTTTGATTTGAT+TGG + chr3_2:20803925-20803944 Msa0398800:five_prime_UTR 35.0%
TTCATGGAAAGTTCTTCTCT+TGG + chr3_2:20804042-20804061 Msa0398800:five_prime_UTR 35.0%
AAGTTCTTCTCTTGGTTGTT+TGG + chr3_2:20804050-20804069 Msa0398800:five_prime_UTR 35.0%
! TTGTTATCTAGCGGCTTTAT+AGG + chr3_2:20804130-20804149 Msa0398800:five_prime_UTR 35.0%
! TGGAAAAAGAGTTTGGAACA+TGG + chr3_2:20804384-20804403 Msa0398800:CDS 35.0%
CTCTTATCATTTGTCTTCAG+AGG + chr3_2:20804413-20804432 Msa0398800:CDS 35.0%
!! AATTTTAAGGATGGTGCAGA+TGG + chr3_2:20804693-20804712 Msa0398800:CDS 35.0%
! GAGCAAAATACGAGTAGTTT+TGG + chr3_2:20804720-20804739 Msa0398800:CDS 35.0%
ATTTGTGACTGAAAGAGTTG+TGG - chr3_2:20804794-20804813 None:intergenic 35.0%
TAATGGTCTACTAACATGCT+CGG - chr3_2:20804841-20804860 None:intergenic 35.0%
AGCCATGAAACAACTTTCTA+AGG - chr3_2:20804868-20804887 None:intergenic 35.0%
TTTCATCACCATCTACAACA+AGG + chr3_2:20804937-20804956 Msa0398800:CDS 35.0%
! CGAAATAACCTTGTTGTAGA+TGG - chr3_2:20804948-20804967 None:intergenic 35.0%
GATTATAAGCTGCATAAAGC+TGG + chr3_2:20805038-20805057 Msa0398800:CDS 35.0%
ACACAAAAATGTAGTTGGAG+GGG + chr3_2:20805070-20805089 Msa0398800:CDS 35.0%
! TAAAGATCCAATTTTGGGCA+AGG - chr3_2:20805102-20805121 None:intergenic 35.0%
TGCATCAAGTTTCATCATCT+TGG - chr3_2:20805132-20805151 None:intergenic 35.0%
ATGAAACTTGATGCAGTTGA+TGG + chr3_2:20805137-20805156 Msa0398800:CDS 35.0%
AGTGGAAAACTCACTCAATA+TGG + chr3_2:20805197-20805216 Msa0398800:CDS 35.0%
CTTGCAAACCTTTATATTGC+TGG + chr3_2:20805284-20805303 Msa0398800:intron 35.0%
CAATCGCAGTTGCAATATAA+CGG - chr3_2:20805357-20805376 None:intergenic 35.0%
AAACACACCTGTTATTCTTG+AGG + chr3_2:20805756-20805775 Msa0398800:intron 35.0%
TGAAAAGAAGTCTATGGCAT+TGG - chr3_2:20805796-20805815 None:intergenic 35.0%
ACTAACGAAAAAACACATCG+AGG - chr3_2:20806246-20806265 None:intergenic 35.0%
!! TCGTTAGTTAGTTTGGTTCT+TGG + chr3_2:20806258-20806277 Msa0398800:intron 35.0%
TGATACTGCCTCAAACATTT+AGG + chr3_2:20806370-20806389 Msa0398800:intron 35.0%
GATACTGCCTCAAACATTTA+GGG + chr3_2:20806371-20806390 Msa0398800:intron 35.0%
TGGGATAATAACTTCCAACA+TGG + chr3_2:20806538-20806557 Msa0398800:CDS 35.0%
ACATGTGATCATTCCTTCAA+TGG + chr3_2:20806701-20806720 Msa0398800:CDS 35.0%
TGATCATTCCTTCAATGGTA+AGG + chr3_2:20806706-20806725 Msa0398800:CDS 35.0%
! GCTATCAATATGCTTTTCAG+GGG - chr3_2:20806747-20806766 None:intergenic 35.0%
! GAGCTATCAATATGCTTTTC+AGG - chr3_2:20806749-20806768 None:intergenic 35.0%
GATTCTTTGCATTCTACTCT+GGG - chr3_2:20806773-20806792 None:intergenic 35.0%
TGATTCTTTGCATTCTACTC+TGG - chr3_2:20806774-20806793 None:intergenic 35.0%
AAGCAGAACTTGAGAGATTA+GGG + chr3_2:20806852-20806871 Msa0398800:CDS 35.0%
! AGCATAACTGTTACGTTTTC+TGG + chr3_2:20806929-20806948 Msa0398800:intron 35.0%
CTAGAATCAGAAAGAATGGA+TGG - chr3_2:20807220-20807239 None:intergenic 35.0%
GCAACTAGAATCAGAAAGAA+TGG - chr3_2:20807224-20807243 None:intergenic 35.0%
TTAGTGCATGTTTGGATTGA+TGG + chr3_2:20807258-20807277 Msa0398800:intron 35.0%
!! GTTTGGATTGATGGTGAATT+TGG + chr3_2:20807267-20807286 Msa0398800:intron 35.0%
TTTGAGCTGCAACAATATCA+CGG - chr3_2:20807309-20807328 None:intergenic 35.0%
TATGAGATGTAACTTCACAC+CGG - chr3_2:20807566-20807585 None:intergenic 35.0%
AAACGTAAACTCAGTTCATG+CGG - chr3_2:20807780-20807799 None:intergenic 35.0%
CCAAAGACTTTACTTTCATC+TGG - chr3_2:20807869-20807888 None:intergenic 35.0%
CCAGATGAAAGTAAAGTCTT+TGG + chr3_2:20807866-20807885 Msa0398800:CDS 35.0%
CCCTTAATTCTCAATCTATC+AGG + chr3_2:20807981-20808000 Msa0398800:CDS 35.0%
GCCTGATAGATTGAGAATTA+AGG - chr3_2:20807985-20808004 None:intergenic 35.0%
! TTGTGAATGTGATAATGAGG+AGG + chr3_2:20808214-20808233 Msa0398800:CDS 35.0%
! TCTGCAACAACGTGTTTTCA+CGG - chr3_2:20803026-20803045 None:intergenic 40.0%
!! GAAGTATTGTCGAATCTAGG+AGG - chr3_2:20803080-20803099 None:intergenic 40.0%
!! CACGAAGTATTGTCGAATCT+AGG - chr3_2:20803083-20803102 None:intergenic 40.0%
! CACTACAAAACCCTTTTCTG+AGG - chr3_2:20803324-20803343 None:intergenic 40.0%
!! CAGAAAAGGGTTTTGTAGTG+AGG + chr3_2:20803324-20803343 Msa0398800:intron 40.0%
! CTTTGTTTCACCAACACTTC+TGG - chr3_2:20803649-20803668 None:intergenic 40.0%
!! CAGAAGTGTTGGTGAAACAA+AGG + chr3_2:20803647-20803666 Msa0398800:intron 40.0%
! GAGATGATAGTGTCTGACAT+TGG + chr3_2:20803735-20803754 Msa0398800:intron 40.0%
ATTGCTACCACTTGAGAAGT+AGG + chr3_2:20803880-20803899 Msa0398800:five_prime_UTR 40.0%
TTCAGAACCTACTTCTCAAG+TGG - chr3_2:20803890-20803909 None:intergenic 40.0%
!! GTAGGTTCTGAAGATTAGAG+TGG + chr3_2:20803898-20803917 Msa0398800:five_prime_UTR 40.0%
GCAACTTGTAGTGTAGAGTT+TGG + chr3_2:20804096-20804115 Msa0398800:five_prime_UTR 40.0%
CTTGTAGTGTAGAGTTTGGT+TGG + chr3_2:20804100-20804119 Msa0398800:five_prime_UTR 40.0%
! GGTACAGTGTTGTTATCTAG+CGG + chr3_2:20804121-20804140 Msa0398800:five_prime_UTR 40.0%
! CTTTGTACTGACACGTATCA+CGG - chr3_2:20804195-20804214 None:intergenic 40.0%
ACTAACTCTGGTATCAATCG+TGG - chr3_2:20804288-20804307 None:intergenic 40.0%
ACGATTGATACCAGAGTTAG+TGG + chr3_2:20804287-20804306 Msa0398800:five_prime_UTR 40.0%
TGTGAGAGTGACGGTAAAAA+TGG + chr3_2:20804311-20804330 Msa0398800:exon 40.0%
GTTGTTGGAGCTGGTTATTT+AGG + chr3_2:20804354-20804373 Msa0398800:CDS 40.0%
!!! ACGAGTAGTTTTGGCAATCA+TGG + chr3_2:20804729-20804748 Msa0398800:CDS 40.0%
!!! CGAGTAGTTTTGGCAATCAT+GGG + chr3_2:20804730-20804749 Msa0398800:CDS 40.0%
ATCACTTTGGCAGAAAACTC+AGG - chr3_2:20804765-20804784 None:intergenic 40.0%
GTTGTGGATAGGAATCACTT+TGG - chr3_2:20804778-20804797 None:intergenic 40.0%
TGACTGAAAGAGTTGTGGAT+AGG - chr3_2:20804789-20804808 None:intergenic 40.0%
AAAACGTTTCGTCGAGAGAA+AGG - chr3_2:20804817-20804836 None:intergenic 40.0%
AATGGTCTACTAACATGCTC+GGG - chr3_2:20804840-20804859 None:intergenic 40.0%
! GTTGTAGATGGTGATGAAAG+AGG - chr3_2:20804936-20804955 None:intergenic 40.0%
! AGTTTGATCAGTGCATTGAC+TGG + chr3_2:20805008-20805027 Msa0398800:CDS 40.0%
! TTTTGAATTGCAGTCCGCAA+CGG - chr3_2:20805380-20805399 None:intergenic 40.0%
TGTGTTGAGAGTAACACTGT+TGG + chr3_2:20805422-20805441 Msa0398800:intron 40.0%
ATGCGACTTCTGTTACAATC+AGG + chr3_2:20805479-20805498 Msa0398800:intron 40.0%
!! TACCTGCATTTCTAGTAGCA+GGG + chr3_2:20805507-20805526 Msa0398800:intron 40.0%
!!! TCTTGGTTACTTTTGCTCAC+AGG + chr3_2:20805870-20805889 Msa0398800:intron 40.0%
! TGTGCTCTTGATAGTCAGTT+TGG + chr3_2:20806219-20806238 Msa0398800:intron 40.0%
CTTTGGTCCCTAAATGTTTG+AGG - chr3_2:20806381-20806400 None:intergenic 40.0%
ACGTCCGTAATTATCAGATC+CGG + chr3_2:20806487-20806506 Msa0398800:intron 40.0%
AACGCCGGATCTGATAATTA+CGG - chr3_2:20806494-20806513 None:intergenic 40.0%
TTCAGTCTTGGGATTTCTCT+TGG + chr3_2:20806518-20806537 Msa0398800:CDS 40.0%
TCAGTCTTGGGATTTCTCTT+GGG + chr3_2:20806519-20806538 Msa0398800:CDS 40.0%
GTTGAAGCAGAATGAGAACT+TGG + chr3_2:20806595-20806614 Msa0398800:CDS 40.0%
GAAAGATTCGATGACAGTGA+AGG + chr3_2:20806646-20806665 Msa0398800:CDS 40.0%
ATGTAGCTCCTTACCATTGA+AGG - chr3_2:20806717-20806736 None:intergenic 40.0%
GAAGCAGAACTTGAGAGATT+AGG + chr3_2:20806851-20806870 Msa0398800:CDS 40.0%
AGAACTTGAGAGATTAGGGT+TGG + chr3_2:20806856-20806875 Msa0398800:CDS 40.0%
!! GAAATTATCCGAGCTTGTTG+AGG + chr3_2:20806904-20806923 Msa0398800:CDS 40.0%
TATGCTTACCTCAACAAGCT+CGG - chr3_2:20806915-20806934 None:intergenic 40.0%
!! GTACGGATTGATAGTGAGTT+TGG - chr3_2:20807373-20807392 None:intergenic 40.0%
! TAGTGGGAGAAGATTCCTTT+TGG - chr3_2:20807914-20807933 None:intergenic 40.0%
CTATCATGAATGATGGCTGA+TGG - chr3_2:20808077-20808096 None:intergenic 40.0%
GTCGTCACTATCATGAATGA+TGG - chr3_2:20808084-20808103 None:intergenic 40.0%
! CATGATAGTGACGACAAAGA+AGG + chr3_2:20808089-20808108 Msa0398800:CDS 40.0%
GCATTCCAATCATGTGAAAG+CGG - chr3_2:20808116-20808135 None:intergenic 40.0%
ATACGATTTCGCGACAATGT+TGG + chr3_2:20808148-20808167 Msa0398800:CDS 40.0%
ATTTCGCGACAATGTTGGAA+GGG + chr3_2:20808153-20808172 Msa0398800:CDS 40.0%
! TGAATGTGATAATGAGGAGG+TGG + chr3_2:20808217-20808236 Msa0398800:CDS 40.0%
! ACGCATTTGACCAGAAGTGT+TGG + chr3_2:20803636-20803655 Msa0398800:intron 45.0%
CTATAGCAGCACTGTAGCAT+AGG + chr3_2:20804231-20804250 Msa0398800:five_prime_UTR 45.0%
CTGGTATCAATCGTGGATCA+AGG - chr3_2:20804281-20804300 None:intergenic 45.0%
ACTCTCACATCCACTAACTC+TGG - chr3_2:20804300-20804319 None:intergenic 45.0%
! GTTAGTGGATGTGAGAGTGA+CGG + chr3_2:20804302-20804321 Msa0398800:five_prime_UTR 45.0%
GTTGTTTGAGGGAGGTTAAG+GGG - chr3_2:20804473-20804492 None:intergenic 45.0%
GGTTGTTTGAGGGAGGTTAA+GGG - chr3_2:20804474-20804493 None:intergenic 45.0%
! TTTTCCCTTTTCACGTCTCC+GGG - chr3_2:20804496-20804515 None:intergenic 45.0%
! CTTTTCCCTTTTCACGTCTC+CGG - chr3_2:20804497-20804516 None:intergenic 45.0%
GAGACGAGGCTTCTTATAGA+GGG + chr3_2:20804574-20804593 Msa0398800:CDS 45.0%
TGGCACTGCTAAGTTCGATA+TGG - chr3_2:20804655-20804674 None:intergenic 45.0%
!! CAGTGCATTGACTGGAAGTA+AGG + chr3_2:20805016-20805035 Msa0398800:CDS 45.0%
GTTCCTTCCTTGCCCAAAAT+TGG + chr3_2:20805092-20805111 Msa0398800:CDS 45.0%
! GATCCAATTTTGGGCAAGGA+AGG - chr3_2:20805098-20805117 None:intergenic 45.0%
!!! GGATTTTTAGGTCTCCGCAA+CGG - chr3_2:20805336-20805355 None:intergenic 45.0%
!! CTACCTGCATTTCTAGTAGC+AGG + chr3_2:20805506-20805525 Msa0398800:intron 45.0%
GGTGCAAAGCTAATTCTGAC+TGG + chr3_2:20805548-20805567 Msa0398800:intron 45.0%
TGAATGCGTCAAGCTTGGAT+AGG + chr3_2:20806882-20806901 Msa0398800:CDS 45.0%
CTGGTGACTACACAAGTCTT+CGG + chr3_2:20806948-20806967 Msa0398800:intron 45.0%
TGCAGTTGCACTCTCTGTTA+AGG - chr3_2:20807155-20807174 None:intergenic 45.0%
! AACAGAGAGTGCAACTGCAA+AGG + chr3_2:20807156-20807175 Msa0398800:intron 45.0%
CAAAATCTGCTACGAACTCC+GGG - chr3_2:20807674-20807693 None:intergenic 45.0%
GCAAAATCTGCTACGAACTC+CGG - chr3_2:20807675-20807694 None:intergenic 45.0%
! TTCGTAGCAGATTTTGCGCA+AGG + chr3_2:20807678-20807697 Msa0398800:CDS 45.0%
! AGGAAGAGGTGTGATGACAT+TGG - chr3_2:20807739-20807758 None:intergenic 45.0%
AAGGAATCTTCTCCCACTAG+AGG + chr3_2:20807915-20807934 Msa0398800:CDS 45.0%
! GGCTGATGGTGAATTGTCTT+CGG - chr3_2:20808063-20808082 None:intergenic 45.0%
AAGGTCCGCTTTCACATGAT+TGG + chr3_2:20808108-20808127 Msa0398800:CDS 45.0%
GATTTCGCGACAATGTTGGA+AGG + chr3_2:20808152-20808171 Msa0398800:CDS 45.0%
! AGGTGGAGAGGCTTTTGATA+AGG + chr3_2:20808234-20808253 Msa0398800:CDS 45.0%
GGAGGTTAAGGGGCTGATAA+AGG - chr3_2:20804463-20804482 None:intergenic 50.0%
GGGTTGTTTGAGGGAGGTTA+AGG - chr3_2:20804475-20804494 None:intergenic 50.0%
TAACCTCCCTCAAACAACCC+CGG + chr3_2:20804475-20804494 Msa0398800:CDS 50.0%
! TTTCCCTTTTCACGTCTCCG+GGG - chr3_2:20804495-20804514 None:intergenic 50.0%
GGAGACGAGGCTTCTTATAG+AGG + chr3_2:20804573-20804592 Msa0398800:CDS 50.0%
!! CAGTTGATGGACGAAGTCGA+AGG + chr3_2:20805150-20805169 Msa0398800:CDS 50.0%
GCTGGAAAATGAGGCTAACG+CGG + chr3_2:20805302-20805321 Msa0398800:intron 50.0%
CACCCTGCTACTAGAAATGC+AGG - chr3_2:20805512-20805531 None:intergenic 50.0%
!! CTGCATTTCTAGTAGCAGGG+TGG + chr3_2:20805510-20805529 Msa0398800:intron 50.0%
AGCTTTGCACCTGCTATTGC+AGG - chr3_2:20805539-20805558 None:intergenic 50.0%
! GACTATCAAGAGCACATGCG+AGG - chr3_2:20806215-20806234 None:intergenic 50.0%
CCAAGACTGAAGAGAAACGC+CGG - chr3_2:20806509-20806528 None:intergenic 50.0%
CGGCGTTTCTCTTCAGTCTT+GGG + chr3_2:20806507-20806526 Msa0398800:CDS 50.0%
GGACATGAATGCGTCAAGCT+TGG + chr3_2:20806877-20806896 Msa0398800:CDS 50.0%
AGGTGAGTTTCGAGCTGACA+CGG + chr3_2:20807698-20807717 Msa0398800:CDS 50.0%
TTTCGAGCTGACACGGTCAA+TGG + chr3_2:20807705-20807724 Msa0398800:CDS 50.0%
ACTGCATAGTTGGCAGGAAG+AGG - chr3_2:20807753-20807772 None:intergenic 50.0%
ATGCGGCGAAACTGCATAGT+TGG - chr3_2:20807763-20807782 None:intergenic 50.0%
! CCTTCACTCGTGTTTCGAGT+TGG - chr3_2:20807821-20807840 None:intergenic 50.0%
CCAACTCGAAACACGAGTGA+AGG + chr3_2:20807818-20807837 Msa0398800:CDS 50.0%
! GTGATAATGAGGAGGTGGAG+AGG + chr3_2:20808222-20808241 Msa0398800:CDS 50.0%
!! TGGCTTGGTGCAGCTGTTGT+TGG + chr3_2:20804339-20804358 Msa0398800:CDS 55.0%
ACGTCTCCGGGGTTGTTTGA+GGG - chr3_2:20804484-20804503 None:intergenic 55.0%
ACAACCCCGGAGACGTGAAA+AGG + chr3_2:20804488-20804507 Msa0398800:CDS 55.0%
CAACCCCGGAGACGTGAAAA+GGG + chr3_2:20804489-20804508 Msa0398800:CDS 55.0%
TCGGATGTGAGTTCCGTGGA+TGG + chr3_2:20804540-20804559 Msa0398800:CDS 55.0%
TCCTGTCGAAGGACCATCCA+CGG - chr3_2:20804556-20804575 None:intergenic 55.0%
TGCAACTGCGATTGCCGTTG+CGG + chr3_2:20805363-20805382 Msa0398800:intron 55.0%
CCGGCGTTTCTCTTCAGTCT+TGG + chr3_2:20806506-20806525 Msa0398800:CDS 55.0%
GGCGAAACTGCATAGTTGGC+AGG - chr3_2:20807759-20807778 None:intergenic 55.0%
GGTGCAGCTGTTGTTGGAGC+TGG + chr3_2:20804345-20804364 Msa0398800:CDS 60.0%
TCTCCGGGGTTGTTTGAGGG+AGG - chr3_2:20804481-20804500 None:intergenic 60.0%
CACGTCTCCGGGGTTGTTTG+AGG - chr3_2:20804485-20804504 None:intergenic 60.0%
GGGTTCGGATGTGAGTTCCG+TGG + chr3_2:20804536-20804555 Msa0398800:CDS 60.0%
TCCGTGGATGGTCCTTCGAC+AGG + chr3_2:20804552-20804571 Msa0398800:CDS 60.0%
TGGTCCTTCGACAGGAGACG+AGG + chr3_2:20804560-20804579 Msa0398800:CDS 60.0%
GAAGCCTCGTCTCCTGTCGA+AGG - chr3_2:20804567-20804586 None:intergenic 60.0%
GGGTGGTGACCTGCAATAGC+AGG + chr3_2:20805527-20805546 Msa0398800:intron 60.0%
ACGCGGTTGCGATGCCGTTG+CGG + chr3_2:20805319-20805338 Msa0398800:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 20802947 20808509 20802947 ID=Msa0398800;Name=Msa0398800
chr3_2 mRNA 20802947 20808509 20802947 ID=Msa0398800-mRNA-1;Parent=Msa0398800;Name=Msa0398800-mRNA-1;_AED=0.03;_eAED=0.03;_QI=623|1|1|1|0.5|0.4|5|160|664
chr3_2 exon 20802947 20803145 20802947 ID=Msa0398800-mRNA-1:exon:4550;Parent=Msa0398800-mRNA-1
chr3_2 exon 20803865 20803976 20803865 ID=Msa0398800-mRNA-1:exon:4551;Parent=Msa0398800-mRNA-1
chr3_2 exon 20804018 20805218 20804018 ID=Msa0398800-mRNA-1:exon:4552;Parent=Msa0398800-mRNA-1
chr3_2 exon 20806504 20806925 20806504 ID=Msa0398800-mRNA-1:exon:4553;Parent=Msa0398800-mRNA-1
chr3_2 exon 20807666 20808509 20807666 ID=Msa0398800-mRNA-1:exon:4554;Parent=Msa0398800-mRNA-1
chr3_2 five_prime_UTR 20802947 20803145 20802947 ID=Msa0398800-mRNA-1:five_prime_utr;Parent=Msa0398800-mRNA-1
chr3_2 five_prime_UTR 20803865 20803976 20803865 ID=Msa0398800-mRNA-1:five_prime_utr;Parent=Msa0398800-mRNA-1
chr3_2 five_prime_UTR 20804018 20804329 20804018 ID=Msa0398800-mRNA-1:five_prime_utr;Parent=Msa0398800-mRNA-1
chr3_2 CDS 20804330 20805218 20804330 ID=Msa0398800-mRNA-1:cds;Parent=Msa0398800-mRNA-1
chr3_2 CDS 20806504 20806925 20806504 ID=Msa0398800-mRNA-1:cds;Parent=Msa0398800-mRNA-1
chr3_2 CDS 20807666 20808349 20807666 ID=Msa0398800-mRNA-1:cds;Parent=Msa0398800-mRNA-1
chr3_2 three_prime_UTR 20808350 20808509 20808350 ID=Msa0398800-mRNA-1:three_prime_utr;Parent=Msa0398800-mRNA-1
Gene Sequence

>Msa0398800

ATGGATTTTTGGCTTGGTGCAGCTGTTGTTGGAGCTGGTTATTTAGGTAAATATTGGAAAAAGAGTTTGGAACATGGTGATAGCTCTTATCATTTGTCTTCAGAGGTTTCAAATTTTGAGAAAGGCGAGTCCTTTATCAGCCCCTTAACCTCCCTCAAACAACCCCGGAGACGTGAAAAGGGAAAAGATGTTTCTTTAGATAGAATGGGTTCGGATGTGAGTTCCGTGGATGGTCCTTCGACAGGAGACGAGGCTTCTTATAGAGGGTTCAATTGTGAAAAAATAAGACATTTTCAGAATTATAATGAGAGTGATTTTCTATCCATATCGAACTTAGCAGTGCCATTATCACCATATGATGATAATTTTAAGGATGGTGCAGATGGAAATGAGCAAAATACGAGTAGTTTTGGCAATCATGGGTTCTTTCGTCCTGAGTTTTCTGCCAAAGTGATTCCTATCCACAACTCTTTCAGTCACAAATCCTTTCTCTCGACGAAACGTTTTCCCGAGCATGTTAGTAGACCATTAAATTCCTTAGAAAGTTGTTTCATGGCTCAGCTATATAAAGAGCATGCCAAAATGGAAGAATATGTCTTTAGTCCTCTTTCATCACCATCTACAACAAGGTTATTTCGTGTTAGTAATGGTAGCCGAATACTGAATAGAGAAAATTGTAGTTTGATCAGTGCATTGACTGGAAGTAAGGATTATAAGCTGCATAAAGCTGGTCGAGAAAAACACAAAAATGTAGTTGGAGGGGTTCCTTCCTTGCCCAAAATTGGATCTTTAAATGATACCAAGATGATGAAACTTGATGCAGTTGATGGACGAAGTCGAAGGTCAAGCTTTTCTGATGACTTGTTTAGTGGAAAACTCACTCAATATGATCCGGCGTTTCTCTTCAGTCTTGGGATTTCTCTTGGGATAATAACTTCCAACATGGCAAATAAAAGAGAAATAGTCAAGATAAGAGAACTGTTGAAGCAGAATGAGAACTTGGTTCAAGATCTACAAGACGAACTCGATATGAAAGATTCGATGACAGTGAAGGAGTTACAAAATGAAAATTATGGTTCACAAGATACATGTGATCATTCCTTCAATGGTAAGGAGCTACATGAATTTTCCCCTGAAAAGCATATTGATAGCTCTCCCAGAGTAGAATGCAAAGAATCATATGATAAAAAGGAACAACAGAGTTCAGAGTCTATGAGCAAAATTGAAGCTGAGCTTGAAGCAGAACTTGAGAGATTAGGGTTGGACATGAATGCGTCAAGCTTGGATAGGAAATTATCCGAGCTTGTTGAGATTGACCCGGAGTTCGTAGCAGATTTTGCGCAAGGTGAGTTTCGAGCTGACACGGTCAATGGAGCAGATGCCAATGTCATCACACCTCTTCCTGCCAACTATGCAGTTTCGCCGCATGAACTGAGTTTACGTTTGCACGAAGTCATACAAAACCAACTCGAAACACGAGTGAAGGAGCTTGAGACAGCTCTTGAAAATAGCCAGATGAAAGTAAAGTCTTTGGAATCTGAACATGATGTTAGTTTCCAAAAGGAATCTTCTCCCACTAGAGGAAACTTAATGATGACTCATAAAGATTGCGACACTATGTCCCAACCCTTAATTCTCAATCTATCAGGCGAAGCTCTTGAAGCATACAATGAAACCTATGAAGAATTAATAAATATGAATGATTCCGAAGACAATTCACCATCAGCCATCATTCATGATAGTGACGACAAAGAAGGTCCGCTTTCACATGATTGGAATGCAACAGTTTTTGAATACGATTTCGCGACAATGTTGGAAGGGCAAAGCTCTAGTGAATTGAATATTAGTGGAGATGAAAGTTGTGAATGTGATAATGAGGAGGTGGAGAGGCTTTTGATAAGGCAAATTGTTGAAAGAACCAAGAAAGGTTCTCCTTTTTTTCAAAATGCAAAAAAGATATTGTATTCTATGGATGAAGATGAACAACAACATTGA
Protein sequence

>Msa0398800

MDFWLGAAVVGAGYLGKYWKKSLEHGDSSYHLSSEVSNFEKGESFISPLTSLKQPRRREKGKDVSLDRMGSDVSSVDGPSTGDEASYRGFNCEKIRHFQNYNESDFLSISNLAVPLSPYDDNFKDGADGNEQNTSSFGNHGFFRPEFSAKVIPIHNSFSHKSFLSTKRFPEHVSRPLNSLESCFMAQLYKEHAKMEEYVFSPLSSPSTTRLFRVSNGSRILNRENCSLISALTGSKDYKLHKAGREKHKNVVGGVPSLPKIGSLNDTKMMKLDAVDGRSRRSSFSDDLFSGKLTQYDPAFLFSLGISLGIITSNMANKREIVKIRELLKQNENLVQDLQDELDMKDSMTVKELQNENYGSQDTCDHSFNGKELHEFSPEKHIDSSPRVECKESYDKKEQQSSESMSKIEAELEAELERLGLDMNASSLDRKLSELVEIDPEFVADFAQGEFRADTVNGADANVITPLPANYAVSPHELSLRLHEVIQNQLETRVKELETALENSQMKVKSLESEHDVSFQKESSPTRGNLMMTHKDCDTMSQPLILNLSGEALEAYNETYEELINMNDSEDNSPSAIIHDSDDKEGPLSHDWNATVFEYDFATMLEGQSSSELNISGDESCECDNEEVERLLIRQIVERTKKGSPFFQNAKKILYSMDEDEQQH*