AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0242290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242290 MtrunA17_Chr2g0294391 96.069 407 14 2 6 412 20 424 0.0 803
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 78 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCCTGAGCATCTCTTAT+TGG 0.255116 2_2:-18380938 Msa0242290:CDS
GCAGGCTTTCTTCAACTTGC+TGG 0.275625 2_2:-18381429 Msa0242290:intron
AATATTACCTTGCACTTGTA+TGG 0.276099 2_2:+18382468 None:intergenic
AGTCTCTCCAGAGAGGTAAT+TGG 0.280375 2_2:-18383595 Msa0242290:CDS
AGCATCTCTTATTGGCTCTA+AGG 0.283609 2_2:-18380930 Msa0242290:CDS
AGGGAAGCTCTTGCTTTGAT+TGG 0.323169 2_2:-18380910 Msa0242290:CDS
TAGTACTCTTGTTGGTGTTT+CGG 0.329633 2_2:+18382860 None:intergenic
ACATCTTATGCTGCCTTAGA+AGG 0.333220 2_2:-18383302 Msa0242290:CDS
GAAGAACTATGGCGTGCTTT+AGG 0.333345 2_2:-18382269 Msa0242290:CDS
AAGTTGAAGTTTCTAAGATT+TGG 0.338252 2_2:+18382018 None:intergenic
ATTGTTGAATCTCCAACATT+AGG 0.339488 2_2:+18382075 None:intergenic
ATCTTAGAAACTTCAACTTA+TGG 0.342098 2_2:-18382014 Msa0242290:CDS
ATAGATTATTGACATTTAAC+AGG 0.344744 2_2:+18380886 None:intergenic
AGTTTGGTTTACACTCTTGC+TGG 0.350609 2_2:-18383518 Msa0242290:CDS
TATGCTGCCTTAGAAGGCCT+TGG 0.350897 2_2:-18383296 Msa0242290:CDS
CGTCCGATGAGTGGAGATAT+TGG 0.364584 2_2:-18381869 Msa0242290:CDS
TCATAACCCAAGGCCTTCTA+AGG 0.373122 2_2:+18383289 None:intergenic
AATAGCCTTTGCTGCTCAAT+TGG 0.377573 2_2:-18381825 Msa0242290:CDS
TTTGTGAAGTATATTTCTCT+TGG 0.386028 2_2:+18382895 None:intergenic
GGCATACATGTTCAGATTGT+TGG 0.392739 2_2:-18381015 Msa0242290:intron
ATGCTGCCTTAGAAGGCCTT+GGG 0.406090 2_2:-18383295 Msa0242290:CDS
GTAGACTGTTTGAAGAACTA+TGG 0.410606 2_2:-18382280 Msa0242290:CDS
TTGTTTGTTTCCAGAATACT+TGG 0.412856 2_2:-18381245 Msa0242290:intron
GTCCGATGAGTGGAGATATT+GGG 0.417237 2_2:-18381868 Msa0242290:CDS
TATTGGGAGAGGAGCAACTA+AGG 0.440476 2_2:-18381852 Msa0242290:CDS
AAAACCTTTAGTACTCTTGT+TGG 0.443278 2_2:+18382852 None:intergenic
TGGAATGAGATTGCATTAGC+AGG 0.444449 2_2:+18382915 None:intergenic
CAGGTTAGTTTACCTAATGT+TGG 0.448264 2_2:-18382087 Msa0242290:CDS
AGAAGCAGCTCCACCATGTT+GGG 0.448605 2_2:+18380969 None:intergenic
GTCTCTCCAGAGAGGTAATT+GGG 0.449708 2_2:-18383594 Msa0242290:CDS
CTTGATTGAAACTTTGATGT+TGG 0.455698 2_2:-18380848 Msa0242290:three_prime_UTR
GGCTTTCTTCAACTTGCTGG+TGG 0.463509 2_2:-18381426 Msa0242290:CDS
GTGCTTAATTCCAGCAAAAG+TGG 0.464416 2_2:-18383711 Msa0242290:CDS
CCATCACACGCTTTAATTAG+CGG 0.467340 2_2:-18381190 Msa0242290:CDS
GATCTTCACTTTCGCAAAGC+CGG 0.473240 2_2:-18383246 Msa0242290:intron
TTAATTAGCGGCATAGCCTA+TGG 0.484285 2_2:-18381178 Msa0242290:CDS
AGAGCCAATAAGAGATGCTC+AGG 0.491628 2_2:+18380934 None:intergenic
ACTAATGCTCACACAATTGA+AGG 0.491760 2_2:-18381402 Msa0242290:CDS
TGATGACGACGATGATGAAA+TGG 0.500055 2_2:+18383628 None:intergenic
GCTTCACCCAATTACCTCTC+TGG 0.500095 2_2:+18383588 None:intergenic
CAGTCCGATGGACAGTCCTC+AGG 0.509146 2_2:+18382963 None:intergenic
GTCATAACGGAGCGCTGCTA+TGG 0.513932 2_2:-18382719 Msa0242290:CDS
TAAGAACCTCATCAACACTT+TGG 0.520508 2_2:-18383660 Msa0242290:CDS
AACACCAACAAGAGTACTAA+AGG 0.529000 2_2:-18382856 Msa0242290:intron
TAGAAACTTCAACTTATGGC+AGG 0.529444 2_2:-18382010 Msa0242290:intron
GAAATGTGTTGTTCATCAGA+AGG 0.540952 2_2:-18383684 Msa0242290:CDS
TTTAGCCAATTGAGCAGCAA+AGG 0.545220 2_2:+18381820 None:intergenic
AAAGCAAAAGATAGACCTCC+TGG 0.545248 2_2:-18381800 Msa0242290:intron
ACGGAGCGCTGCTATGGCTG+TGG 0.547245 2_2:-18382713 Msa0242290:CDS
TTAGACGGCCGTCCGATGAG+TGG 0.552985 2_2:-18381878 Msa0242290:CDS
CTTAACAGAATTTGATCCTG+AGG 0.554620 2_2:-18382979 Msa0242290:intron
GCATCTCTTATTGGCTCTAA+GGG 0.555107 2_2:-18380929 Msa0242290:CDS
CTTTCGCGCGTAGCCACCAT+AGG 0.556649 2_2:+18381162 None:intergenic
TAGAAGCAGCTCCACCATGT+TGG 0.558821 2_2:+18380968 None:intergenic
AATTGGGTGAAGCTCATTTG+TGG 0.561203 2_2:-18383578 Msa0242290:CDS
TCCACCATGTTGGGATTGCA+TGG 0.562511 2_2:+18380978 None:intergenic
CCGCTAATTAAAGCGTGTGA+TGG 0.565743 2_2:+18381190 None:intergenic
CATGCAGGACGGAGTCATAA+CGG 0.567434 2_2:-18382732 Msa0242290:intron
TTGGTTTACACTCTTGCTGG+AGG 0.575304 2_2:-18383515 Msa0242290:intron
TGATCCTGAGGACTGTCCAT+CGG 0.576334 2_2:-18382967 Msa0242290:CDS
GTTGTGAGTGCTGTGAATGA+AGG 0.582088 2_2:-18383342 Msa0242290:CDS
GGAATGAGATTGCATTAGCA+GGG 0.583303 2_2:+18382916 None:intergenic
ATGAGTGGAGATATTGGGAG+AGG 0.585956 2_2:-18381863 Msa0242290:CDS
CTATGGTGGCTACGCGCGAA+AGG 0.602405 2_2:-18381161 Msa0242290:intron
CTCCCAATATCTCCACTCAT+CGG 0.614980 2_2:+18381866 None:intergenic
CAAGGGCGTGAACAGTCCGA+TGG 0.615557 2_2:+18382951 None:intergenic
GAAGCTCCAAAGTGTTGATG+AGG 0.621149 2_2:+18383654 None:intergenic
TTGAGATCCATACAAGTGCA+AGG 0.633756 2_2:-18382475 Msa0242290:intron
ATGTATAAACTAAAGTTAGA+CGG 0.636370 2_2:-18381893 Msa0242290:intron
AGATCCATGCAATCCCAACA+TGG 0.647702 2_2:-18380982 Msa0242290:CDS
CCTCTCTGGAGAGACTCAAG+TGG 0.651836 2_2:+18383602 None:intergenic
ATTAGCGGCATAGCCTATGG+TGG 0.654448 2_2:-18381175 Msa0242290:CDS
CAATATCTCCACTCATCGGA+CGG 0.667049 2_2:+18381870 None:intergenic
TTGACACTGATCATAACCCA+AGG 0.690753 2_2:+18383279 None:intergenic
CCACTTGAGTCTCTCCAGAG+AGG 0.698123 2_2:-18383602 Msa0242290:CDS
TCCATGCAATCCCAACATGG+TGG 0.701127 2_2:-18380979 Msa0242290:CDS
GACGACGATGATGAAATGGA+AGG 0.701336 2_2:+18383632 None:intergenic
TGTGAATGAAGGAATTGAAG+CGG 0.725569 2_2:-18383331 Msa0242290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCTACATTTAAAACTTT+TGG - chr2_2:18381358-18381377 Msa0242290:intron 15.0%
!! TAAGAATTTATAATATCAGA+TGG + chr2_2:18381893-18381912 None:intergenic 15.0%
!! TATTACACAAAAATAACTAA+GGG + chr2_2:18381921-18381940 None:intergenic 15.0%
!! ATATTACACAAAAATAACTA+AGG + chr2_2:18381922-18381941 None:intergenic 15.0%
!! TAAAACTTGTGATGTTTAAT+TGG - chr2_2:18381766-18381785 Msa0242290:intron 20.0%
!!! ATCCTACTTATTTTATCATA+GGG + chr2_2:18381859-18381878 None:intergenic 20.0%
!!! TATCCTACTTATTTTATCAT+AGG + chr2_2:18381860-18381879 None:intergenic 20.0%
!!! CAGTTATATTCTAGTATTTT+AGG + chr2_2:18382091-18382110 None:intergenic 20.0%
!!! ATCACTTTTCAATAAATACT+CGG - chr2_2:18382369-18382388 Msa0242290:intron 20.0%
!! ATTTACTATTAAAATGATCC+AGG - chr2_2:18382421-18382440 Msa0242290:intron 20.0%
!! AATAAACATGGAATAGAATT+TGG + chr2_2:18382594-18382613 None:intergenic 20.0%
!! ATGTATAAACTAAAGTTAGA+CGG - chr2_2:18382634-18382653 Msa0242290:intron 20.0%
!! ATAGATTATTGACATTTAAC+AGG + chr2_2:18383644-18383663 None:intergenic 20.0%
! TGATATCAAAAATCTCAGTT+TGG - chr2_2:18380993-18381012 Msa0242290:CDS 25.0%
! AATTCAAGAATTGGATTATG+TGG - chr2_2:18381120-18381139 Msa0242290:intron 25.0%
!!! CTACATTTAAAACTTTTGGA+AGG - chr2_2:18381362-18381381 Msa0242290:intron 25.0%
! AAAGTTTAATCTATGCTTAC+TGG - chr2_2:18381496-18381515 Msa0242290:intron 25.0%
! TTTGTGAAGTATATTTCTCT+TGG + chr2_2:18381635-18381654 None:intergenic 25.0%
!!! TCCTACTTATTTTATCATAG+GGG + chr2_2:18381858-18381877 None:intergenic 25.0%
!!! AAGTTGAAGTTTCTAAGATT+TGG + chr2_2:18382512-18382531 None:intergenic 25.0%
! ATCTTAGAAACTTCAACTTA+TGG - chr2_2:18382513-18382532 Msa0242290:CDS 25.0%
!!! TGGGTTTGTTAAAATAAACA+TGG + chr2_2:18382606-18382625 None:intergenic 25.0%
!! GTCTAACTTTAGTTTATACA+TGG + chr2_2:18382635-18382654 None:intergenic 25.0%
! ATGATAGATATAAAGCCTAA+AGG + chr2_2:18383047-18383066 None:intergenic 25.0%
! ATTGAAGGATTGAAAAAAGA+AGG - chr2_2:18383140-18383159 Msa0242290:intron 25.0%
!! AATTTAGAACAGAAACAGAA+TGG + chr2_2:18383429-18383448 None:intergenic 25.0%
!!! TTTCTGTTCTAAATTTTCTG+TGG - chr2_2:18383434-18383453 Msa0242290:intron 25.0%
AACCAAGCAAATTCAAGAAT+TGG - chr2_2:18381111-18381130 Msa0242290:intron 30.0%
! ATCCAATTCTTGAATTTGCT+TGG + chr2_2:18381116-18381135 None:intergenic 30.0%
TTGAATAAGAACTGTCTTAC+CGG + chr2_2:18381303-18381322 None:intergenic 30.0%
! GCGATAAGATTTTTGATGTA+TGG + chr2_2:18381336-18381355 None:intergenic 30.0%
AGGATCAAATTCTGTTAAGA+AGG + chr2_2:18381547-18381566 None:intergenic 30.0%
AAAACCTTTAGTACTCTTGT+TGG + chr2_2:18381678-18381697 None:intergenic 30.0%
TTTAATTGGATTGAACATGC+AGG - chr2_2:18381780-18381799 Msa0242290:intron 30.0%
TTTACTCTTCGTATTAATCC+AGG - chr2_2:18381961-18381980 Msa0242290:intron 30.0%
AATATTACCTTGCACTTGTA+TGG + chr2_2:18382062-18382081 None:intergenic 30.0%
CAAATATTAGAAGAGGTTGA+AGG + chr2_2:18382325-18382344 None:intergenic 30.0%
TCAACCTCTTCTAATATTTG+AGG - chr2_2:18382325-18382344 Msa0242290:intron 30.0%
CAACCTCTTCTAATATTTGA+GGG - chr2_2:18382326-18382345 Msa0242290:intron 30.0%
AACCTCTTCTAATATTTGAG+GGG - chr2_2:18382327-18382346 Msa0242290:intron 30.0%
ATTGTTGAATCTCCAACATT+AGG + chr2_2:18382455-18382474 None:intergenic 30.0%
AGTTTATACATGGCAAAGAT+GGG + chr2_2:18382625-18382644 None:intergenic 30.0%
TAGTTTATACATGGCAAAGA+TGG + chr2_2:18382626-18382645 None:intergenic 30.0%
TTGAATTGTGAATACAAACC+AGG + chr2_2:18382748-18382767 None:intergenic 30.0%
TAAAATCTTATCCTGAGTTG+AGG + chr2_2:18382880-18382899 None:intergenic 30.0%
!! GGATAAGATTTTAACGAGAT+AGG - chr2_2:18382887-18382906 Msa0242290:CDS 30.0%
GACATGATATGAATCTATGA+TGG - chr2_2:18382974-18382993 Msa0242290:CDS 30.0%
AATGTTTCATTCCCTTAACA+TGG - chr2_2:18383076-18383095 Msa0242290:intron 30.0%
TTGTTTGTTTCCAGAATACT+TGG - chr2_2:18383282-18383301 Msa0242290:CDS 30.0%
! TTTTCATGATCCAAGTATTC+TGG + chr2_2:18383295-18383314 None:intergenic 30.0%
CTTGATTGAAACTTTGATGT+TGG - chr2_2:18383679-18383698 Msa0242290:CDS 30.0%
!! CATTTCTTATCCACTTTTGC+TGG + chr2_2:18380829-18380848 None:intergenic 35.0%
! GAAATGTGTTGTTCATCAGA+AGG - chr2_2:18380843-18380862 Msa0242290:three_prime_UTR 35.0%
TAAGAACCTCATCAACACTT+TGG - chr2_2:18380867-18380886 Msa0242290:three_prime_UTR 35.0%
TGTGAATGAAGGAATTGAAG+CGG - chr2_2:18381196-18381215 Msa0242290:CDS 35.0%
CTTAACAGAATTTGATCCTG+AGG - chr2_2:18381548-18381567 Msa0242290:intron 35.0%
! TAGTACTCTTGTTGGTGTTT+CGG + chr2_2:18381670-18381689 None:intergenic 35.0%
!! AACACCAACAAGAGTACTAA+AGG - chr2_2:18381671-18381690 Msa0242290:intron 35.0%
! ATTTTATCATAGGGGCAAAC+TGG + chr2_2:18381850-18381869 None:intergenic 35.0%
GCCCCTATGATAAAATAAGT+AGG - chr2_2:18381854-18381873 Msa0242290:CDS 35.0%
GTAGACTGTTTGAAGAACTA+TGG - chr2_2:18382247-18382266 Msa0242290:CDS 35.0%
AACCCCTCAAATATTAGAAG+AGG + chr2_2:18382332-18382351 None:intergenic 35.0%
TCAATAAATACTCGGCTTCA+AGG - chr2_2:18382377-18382396 Msa0242290:intron 35.0%
CAACATTAGGTAAACTAACC+TGG + chr2_2:18382442-18382461 None:intergenic 35.0%
!! CAGGTTAGTTTACCTAATGT+TGG - chr2_2:18382440-18382459 Msa0242290:intron 35.0%
TAGAAACTTCAACTTATGGC+AGG - chr2_2:18382517-18382536 Msa0242290:CDS 35.0%
AATTGTGAATACAAACCAGG+AGG + chr2_2:18382745-18382764 None:intergenic 35.0%
TCTCTATCATGACCATCAAA+CGG + chr2_2:18382801-18382820 None:intergenic 35.0%
! TTTGATGGTCATGATAGAGA+CGG - chr2_2:18382801-18382820 Msa0242290:intron 35.0%
AAGATCTTATCCTGTCATGT+TGG - chr2_2:18382842-18382861 Msa0242290:intron 35.0%
!! AAGATTTTAACGAGATAGGC+AGG - chr2_2:18382891-18382910 Msa0242290:CDS 35.0%
GTCAAGTTATCGTATCATGA+TGG - chr2_2:18382931-18382950 Msa0242290:CDS 35.0%
ATGTCTCAATCCAGTGTTTA+AGG + chr2_2:18382959-18382978 None:intergenic 35.0%
ACTAATGCTCACACAATTGA+AGG - chr2_2:18383125-18383144 Msa0242290:intron 35.0%
GTCACATTATGTGATGACAT+TGG - chr2_2:18383491-18383510 Msa0242290:intron 35.0%
GTGCTTAATTCCAGCAAAAG+TGG - chr2_2:18380816-18380835 Msa0242290:three_prime_UTR 40.0%
! TGATGACGACGATGATGAAA+TGG + chr2_2:18380902-18380921 None:intergenic 40.0%
AATTGGGTGAAGCTCATTTG+TGG - chr2_2:18380949-18380968 Msa0242290:CDS 40.0%
! CATTTGTGGTGCAAGTTTTG+AGG - chr2_2:18380963-18380982 Msa0242290:CDS 40.0%
! AGTTTGGTTTACACTCTTGC+TGG - chr2_2:18381009-18381028 Msa0242290:intron 40.0%
ACATCTTATGCTGCCTTAGA+AGG - chr2_2:18381225-18381244 Msa0242290:CDS 40.0%
TTGACACTGATCATAACCCA+AGG + chr2_2:18381251-18381270 None:intergenic 40.0%
GGAATGAGATTGCATTAGCA+GGG + chr2_2:18381614-18381633 None:intergenic 40.0%
TGGAATGAGATTGCATTAGC+AGG + chr2_2:18381615-18381634 None:intergenic 40.0%
ATTGGATTGAACATGCAGGA+CGG - chr2_2:18381784-18381803 Msa0242290:intron 40.0%
TCTTCGTATTAATCCAGGAG+AGG - chr2_2:18381966-18381985 Msa0242290:intron 40.0%
CTTACATATGTTACCTCTCC+TGG + chr2_2:18381982-18382001 None:intergenic 40.0%
TTGAGATCCATACAAGTGCA+AGG - chr2_2:18382052-18382071 Msa0242290:CDS 40.0%
! GATGTATCGACACAAGGAAA+TGG + chr2_2:18382213-18382232 None:intergenic 40.0%
! TAGAAGGATGTATCGACACA+AGG + chr2_2:18382219-18382238 None:intergenic 40.0%
! GTGTCGATACATCCTTCTAT+AGG - chr2_2:18382220-18382239 Msa0242290:intron 40.0%
AATAGCCTTTGCTGCTCAAT+TGG - chr2_2:18382702-18382721 Msa0242290:CDS 40.0%
TTTAGCCAATTGAGCAGCAA+AGG + chr2_2:18382710-18382729 None:intergenic 40.0%
AAAGCAAAAGATAGACCTCC+TGG - chr2_2:18382727-18382746 Msa0242290:CDS 40.0%
CTCTATCATGACCATCAAAC+GGG + chr2_2:18382800-18382819 None:intergenic 40.0%
TGATAGAGACGGATAGGATA+TGG - chr2_2:18382812-18382831 Msa0242290:intron 40.0%
GATAGAGACGGATAGGATAT+GGG - chr2_2:18382813-18382832 Msa0242290:intron 40.0%
GAGTTAGAAACCAACATGAC+AGG + chr2_2:18382855-18382874 None:intergenic 40.0%
GCAGGATATGATATGTGACA+TGG - chr2_2:18382909-18382928 Msa0242290:CDS 40.0%
TTTCATTCCCTTAACATGGC+AGG - chr2_2:18383080-18383099 Msa0242290:intron 40.0%
AAGAAAGCCTGCCATGTTAA+GGG + chr2_2:18383090-18383109 None:intergenic 40.0%
CCATCACACGCTTTAATTAG+CGG - chr2_2:18383337-18383356 Msa0242290:CDS 40.0%
TTAATTAGCGGCATAGCCTA+TGG - chr2_2:18383349-18383368 Msa0242290:CDS 40.0%
GGCATACATGTTCAGATTGT+TGG - chr2_2:18383512-18383531 Msa0242290:intron 40.0%
TCATCCTGAGCATCTCTTAT+TGG - chr2_2:18383589-18383608 Msa0242290:CDS 40.0%
!! AGCATCTCTTATTGGCTCTA+AGG - chr2_2:18383597-18383616 Msa0242290:CDS 40.0%
!! GCATCTCTTATTGGCTCTAA+GGG - chr2_2:18383598-18383617 Msa0242290:CDS 40.0%
!! GAAGCTCCAAAGTGTTGATG+AGG + chr2_2:18380876-18380895 None:intergenic 45.0%
GACGACGATGATGAAATGGA+AGG + chr2_2:18380898-18380917 None:intergenic 45.0%
AGTCTCTCCAGAGAGGTAAT+TGG - chr2_2:18380932-18380951 Msa0242290:CDS 45.0%
GTCTCTCCAGAGAGGTAATT+GGG - chr2_2:18380933-18380952 Msa0242290:CDS 45.0%
TTGGTTTACACTCTTGCTGG+AGG - chr2_2:18381012-18381031 Msa0242290:intron 45.0%
! GTTGTGAGTGCTGTGAATGA+AGG - chr2_2:18381185-18381204 Msa0242290:CDS 45.0%
TCATAACCCAAGGCCTTCTA+AGG + chr2_2:18381241-18381260 None:intergenic 45.0%
GATCTTCACTTTCGCAAAGC+CGG - chr2_2:18381281-18381300 Msa0242290:intron 45.0%
! CAGGGCAAACATTTTCGCAA+GGG + chr2_2:18381596-18381615 None:intergenic 45.0%
CAGTCTACTCTGCCTATAGA+AGG + chr2_2:18382235-18382254 None:intergenic 45.0%
GAAGAACTATGGCGTGCTTT+AGG - chr2_2:18382258-18382277 Msa0242290:CDS 45.0%
ACTTCAACTTATGGCAGGTG+TGG - chr2_2:18382522-18382541 Msa0242290:CDS 45.0%
CAATATCTCCACTCATCGGA+CGG + chr2_2:18382660-18382679 None:intergenic 45.0%
GTCCGATGAGTGGAGATATT+GGG - chr2_2:18382659-18382678 Msa0242290:intron 45.0%
CTCCCAATATCTCCACTCAT+CGG + chr2_2:18382664-18382683 None:intergenic 45.0%
ATGAGTGGAGATATTGGGAG+AGG - chr2_2:18382664-18382683 Msa0242290:intron 45.0%
TATTGGGAGAGGAGCAACTA+AGG - chr2_2:18382675-18382694 Msa0242290:intron 45.0%
TCTTCACAAGACCCGTTTGA+TGG - chr2_2:18382786-18382805 Msa0242290:intron 45.0%
TGGTCATGATAGAGACGGAT+AGG - chr2_2:18382806-18382825 Msa0242290:intron 45.0%
TTCTAACTCAGCCTCAACTC+AGG - chr2_2:18382866-18382885 Msa0242290:CDS 45.0%
CATGATGGCTCCTTAAACAC+TGG - chr2_2:18382946-18382965 Msa0242290:CDS 45.0%
CAGGATGAGAGAGACATGAT+AGG + chr2_2:18383011-18383030 None:intergenic 45.0%
CTATCATGTCTCTCTCATCC+TGG - chr2_2:18383009-18383028 Msa0242290:intron 45.0%
AAGCCTAAAGGCCAGATCAA+TGG + chr2_2:18383035-18383054 None:intergenic 45.0%
GAAGAAAGCCTGCCATGTTA+AGG + chr2_2:18383091-18383110 None:intergenic 45.0%
CCGCTAATTAAAGCGTGTGA+TGG + chr2_2:18383340-18383359 None:intergenic 45.0%
AGATCCATGCAATCCCAACA+TGG - chr2_2:18383545-18383564 Msa0242290:CDS 45.0%
AGAGCCAATAAGAGATGCTC+AGG + chr2_2:18383596-18383615 None:intergenic 45.0%
AGGGAAGCTCTTGCTTTGAT+TGG - chr2_2:18383617-18383636 Msa0242290:CDS 45.0%
GCTTCACCCAATTACCTCTC+TGG + chr2_2:18380942-18380961 None:intergenic 50.0%
TATGCTGCCTTAGAAGGCCT+TGG - chr2_2:18381231-18381250 Msa0242290:CDS 50.0%
ATGCTGCCTTAGAAGGCCTT+GGG - chr2_2:18381232-18381251 Msa0242290:CDS 50.0%
TGATCCTGAGGACTGTCCAT+CGG - chr2_2:18381560-18381579 Msa0242290:intron 50.0%
! GCAGGGCAAACATTTTCGCA+AGG + chr2_2:18381597-18381616 None:intergenic 50.0%
CATGCAGGACGGAGTCATAA+CGG - chr2_2:18381795-18381814 Msa0242290:intron 50.0%
TTGAAGCTAGTCGCCGTAAG+TGG - chr2_2:18382297-18382316 Msa0242290:intron 50.0%
!! GAGGTTGAAGGCACCACTTA+CGG + chr2_2:18382313-18382332 None:intergenic 50.0%
CGTCCGATGAGTGGAGATAT+TGG - chr2_2:18382658-18382677 Msa0242290:intron 50.0%
TCTCATCCTGGCCATTGATC+TGG - chr2_2:18383021-18383040 Msa0242290:intron 50.0%
TAAAGGCCAGATCAATGGCC+AGG + chr2_2:18383030-18383049 None:intergenic 50.0%
! TGGCCATTGATCTGGCCTTT+AGG - chr2_2:18383029-18383048 Msa0242290:intron 50.0%
GCAGGCTTTCTTCAACTTGC+TGG - chr2_2:18383098-18383117 Msa0242290:intron 50.0%
!! GGCTTTCTTCAACTTGCTGG+TGG - chr2_2:18383101-18383120 Msa0242290:intron 50.0%
ATTAGCGGCATAGCCTATGG+TGG - chr2_2:18383352-18383371 Msa0242290:CDS 50.0%
TCCATGCAATCCCAACATGG+TGG - chr2_2:18383548-18383567 Msa0242290:CDS 50.0%
TCCACCATGTTGGGATTGCA+TGG + chr2_2:18383552-18383571 None:intergenic 50.0%
AGAAGCAGCTCCACCATGTT+GGG + chr2_2:18383561-18383580 None:intergenic 50.0%
TAGAAGCAGCTCCACCATGT+TGG + chr2_2:18383562-18383581 None:intergenic 50.0%
! CCTCTCTGGAGAGACTCAAG+TGG + chr2_2:18380928-18380947 None:intergenic 55.0%
CCACTTGAGTCTCTCCAGAG+AGG - chr2_2:18380925-18380944 Msa0242290:CDS 55.0%
!! GTCATAACGGAGCGCTGCTA+TGG - chr2_2:18381808-18381827 Msa0242290:CDS 55.0%
CAGTCCGATGGACAGTCCTC+AGG + chr2_2:18381567-18381586 None:intergenic 60.0%
! CAAGGGCGTGAACAGTCCGA+TGG + chr2_2:18381579-18381598 None:intergenic 60.0%
TTAGACGGCCGTCCGATGAG+TGG - chr2_2:18382649-18382668 Msa0242290:intron 60.0%
CTTTCGCGCGTAGCCACCAT+AGG + chr2_2:18383368-18383387 None:intergenic 60.0%
CTATGGTGGCTACGCGCGAA+AGG - chr2_2:18383366-18383385 Msa0242290:CDS 60.0%
!! ACGGAGCGCTGCTATGGCTG+TGG - chr2_2:18381814-18381833 Msa0242290:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 18380772 18383777 18380772 ID=Msa0242290;Name=Msa0242290
chr2_2 mRNA 18380772 18383777 18380772 ID=Msa0242290-mRNA-1;Parent=Msa0242290;Name=Msa0242290-mRNA-1;_AED=0.29;_eAED=0.29;_QI=42|1|1|1|1|1|11|119|413
chr2_2 exon 18380772 18381022 18380772 ID=Msa0242290-mRNA-1:exon:7531;Parent=Msa0242290-mRNA-1
chr2_2 exon 18381162 18381253 18381162 ID=Msa0242290-mRNA-1:exon:7530;Parent=Msa0242290-mRNA-1
chr2_2 exon 18381364 18381447 18381364 ID=Msa0242290-mRNA-1:exon:7529;Parent=Msa0242290-mRNA-1
chr2_2 exon 18381801 18381900 18381801 ID=Msa0242290-mRNA-1:exon:7528;Parent=Msa0242290-mRNA-1
chr2_2 exon 18382011 18382106 18382011 ID=Msa0242290-mRNA-1:exon:7527;Parent=Msa0242290-mRNA-1
chr2_2 exon 18382238 18382307 18382238 ID=Msa0242290-mRNA-1:exon:7526;Parent=Msa0242290-mRNA-1
chr2_2 exon 18382476 18382566 18382476 ID=Msa0242290-mRNA-1:exon:7525;Parent=Msa0242290-mRNA-1
chr2_2 exon 18382678 18382747 18382678 ID=Msa0242290-mRNA-1:exon:7524;Parent=Msa0242290-mRNA-1
chr2_2 exon 18382857 18382993 18382857 ID=Msa0242290-mRNA-1:exon:7523;Parent=Msa0242290-mRNA-1
chr2_2 exon 18383247 18383396 18383247 ID=Msa0242290-mRNA-1:exon:7522;Parent=Msa0242290-mRNA-1
chr2_2 exon 18383516 18383777 18383516 ID=Msa0242290-mRNA-1:exon:7521;Parent=Msa0242290-mRNA-1
chr2_2 five_prime_UTR 18383736 18383777 18383736 ID=Msa0242290-mRNA-1:five_prime_utr;Parent=Msa0242290-mRNA-1
chr2_2 CDS 18383516 18383735 18383516 ID=Msa0242290-mRNA-1:cds;Parent=Msa0242290-mRNA-1
chr2_2 CDS 18383247 18383396 18383247 ID=Msa0242290-mRNA-1:cds;Parent=Msa0242290-mRNA-1
chr2_2 CDS 18382857 18382993 18382857 ID=Msa0242290-mRNA-1:cds;Parent=Msa0242290-mRNA-1
chr2_2 CDS 18382678 18382747 18382678 ID=Msa0242290-mRNA-1:cds;Parent=Msa0242290-mRNA-1
chr2_2 CDS 18382476 18382566 18382476 ID=Msa0242290-mRNA-1:cds;Parent=Msa0242290-mRNA-1
chr2_2 CDS 18382238 18382307 18382238 ID=Msa0242290-mRNA-1:cds;Parent=Msa0242290-mRNA-1
chr2_2 CDS 18382011 18382106 18382011 ID=Msa0242290-mRNA-1:cds;Parent=Msa0242290-mRNA-1
chr2_2 CDS 18381801 18381900 18381801 ID=Msa0242290-mRNA-1:cds;Parent=Msa0242290-mRNA-1
chr2_2 CDS 18381364 18381447 18381364 ID=Msa0242290-mRNA-1:cds;Parent=Msa0242290-mRNA-1
chr2_2 CDS 18381162 18381253 18381162 ID=Msa0242290-mRNA-1:cds;Parent=Msa0242290-mRNA-1
chr2_2 CDS 18380891 18381022 18380891 ID=Msa0242290-mRNA-1:cds;Parent=Msa0242290-mRNA-1
chr2_2 three_prime_UTR 18380772 18380890 18380772 ID=Msa0242290-mRNA-1:three_prime_utr;Parent=Msa0242290-mRNA-1
Gene Sequence

>Msa0242290

ATGTGCTTAATTCCAGCAAAAGTGGATAAGAAATGTGTTGTTCATCAGAAGGTTAAGAACCTCATCAACACTTTGGAGCTTCCTTCCATTTCATCATCGTCGTCATCAACTCCACTTGAGTCTCTCCAGAGAGGTAATTGGGTGAAGCTCATTTGTGGTGCAAGTTTTGAGGATGTTGTTGATATCAAAAATCTCAGTTTGGTTTACACTCTTGCTGGAGTTGACTGCATTGACTGTGCTGCTGATGCATCTGTTGTGAGTGCTGTGAATGAAGGAATTGAAGCGGCAAGAGACATCTTATGCTGCCTTAGAAGGCCTTGGGTTATGATCAGTGTCAATGATGATAAAGATCTTCACTTTCGCAAAGCCGAATTTGATCCTGAGGACTGTCCATCGGACTGTTCACGCCCTTGCGAAAATGTTTGCCCTGCTAATGCAATCTCATTCCAAGAGAAATATACTTCACAAATTTCATGTAGTACCGAAACACCAACAAGAGTACTAAAGGACGGAGTCATAACGGAGCGCTGCTATGGCTGTGGTCGCTGTCTTCCAGTTTGCCCCTATGATAAAATAAGAGAGGTAACATATGTAAGAGATGCTGTTACAACTTCTGATCTCATCAAGAGAAATGATGTTGATGCTATTGAGATCCATACAAGTGCAAGGCAGAGTAGACTGTTTGAAGAACTATGGCGTGCTTTAGGAGATTCAGTAGAAAATTTGAAGCTAGTCGCCGTTAGTTTACCTAATGTTGGAGATTCAACAATATATTCTATGAACAAAATGTTCTCTATTATGAAACCAAATCTTAGAAACTTCAACTTATGGCAGTTAGACGGCCGTCCGATGAGTGGAGATATTGGGAGAGGAGCAACTAAGGAGTCAATAGCCTTTGCTGCTCAATTGGCTAAAGCAAAAGATAGACCTCCTGGCTTTCTTCAACTTGCTGGTGGAACTAATGCTCACACAATTGAAGGATTGAAAAAAGAAGGACTCTTTCAAACAACTAGTTTAAAATACTTGGATCATGAAAATTCAACAATCAGTACATCTAATCCATCACACGCTTTAATTAGCGGCATAGCCTATGGTGGCTACGCGCGAAAGATTGTTGGTAGAGTATTGAGATCCATGCAATCCCAACATGGTGGAGCTGCTTCTATTGAAGATCATCCTGAGCATCTCTTATTGGCTCTAAGGGAAGCTCTTGCTTTGATTGGACCTGTTAAATGTCAATAA

Protein sequence

>Msa0242290

MCLIPAKVDKKCVVHQKVKNLINTLELPSISSSSSSTPLESLQRGNWVKLICGASFEDVVDIKNLSLVYTLAGVDCIDCAADASVVSAVNEGIEAARDILCCLRRPWVMISVNDDKDLHFRKAEFDPEDCPSDCSRPCENVCPANAISFQEKYTSQISCSTETPTRVLKDGVITERCYGCGRCLPVCPYDKIREVTYVRDAVTTSDLIKRNDVDAIEIHTSARQSRLFEELWRALGDSVENLKLVAVSLPNVGDSTIYSMNKMFSIMKPNLRNFNLWQLDGRPMSGDIGRGATKESIAFAAQLAKAKDRPPGFLQLAGGTNAHTIEGLKKEGLFQTTSLKYLDHENSTISTSNPSHALISGIAYGGYARKIVGRVLRSMQSQHGGAASIEDHPEHLLLALREALALIGPVKCQ*