AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1394900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394900 MtrunA17_Chr7g0264491 92.403 566 21 7 1 553 1 557 0.0 1020
Msa1394900 MtrunA17_Chr1g0180881 56.452 558 224 6 4 553 15 561 0.0 615
Msa1394900 MtrunA17_Chr3g0145921 36.598 388 237 3 165 548 187 569 9.41e-73 242
Msa1394900 MtrunA17_Chr3g0090001 39.496 238 144 0 312 549 165 402 2.45e-51 181
Msa1394900 MtrunA17_Chr1g0146481 30.065 306 207 2 247 551 250 549 4.39e-42 159
Msa1394900 MtrunA17_Chr4g0021031 32.119 302 197 5 252 547 200 499 1.56e-36 142
Msa1394900 MtrunA17_Chr3g0126401 30.693 303 199 5 253 549 216 513 2.79e-30 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394900 AT2G36990.1 51.292 542 233 7 19 553 30 547 3.57e-178 514
Msa1394900 AT1G08540.1 38.674 362 217 1 188 549 212 568 6.80e-80 261
Msa1394900 AT5G13730.1 35.135 296 189 1 253 548 122 414 5.70e-47 170
Msa1394900 AT3G53920.1 29.693 293 205 1 259 550 278 570 1.22e-41 158
Msa1394900 AT1G64860.1 30.392 306 205 5 250 549 196 499 3.27e-33 133
Msa1394900 AT5G24120.1 29.552 335 223 5 222 549 188 516 6.79e-33 132
Msa1394900 AT5G24120.3 29.552 335 223 5 222 549 188 516 6.79e-33 132
Msa1394900 AT5G24120.2 29.552 335 223 5 222 549 188 516 6.79e-33 132
Msa1394900 AT1G64860.2 29.259 270 184 4 241 504 187 455 2.12e-27 116
Msa1394900 AT3G53920.2 26.866 134 98 0 258 391 277 410 2.04e-17 85.1

Find 128 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAAAGTTGCTTTGTTTC+AGG 0.090588 tig0021901:+30121 None:intergenic
ACCTGTTACCCTCGTGTTTA+AGG 0.141819 tig0021901:+30831 None:intergenic
CTGTTCCTGCAGCTTCTTCT+TGG 0.172620 tig0021901:-31061 Msa1394900:CDS
ATCAAACTTCAGTCTCATTT+TGG 0.184227 tig0021901:-29947 Msa1394900:CDS
GAGAAATCTTTGTCAGAAAT+TGG 0.213726 tig0021901:-27007 Msa1394900:CDS
CTGAGTACCTTCCTTTCTTT+TGG 0.217852 tig0021901:+27058 None:intergenic
TCGCTTTGCTATTTCTTCTT+TGG 0.231759 tig0021901:+28839 None:intergenic
AGAATTCTTCCTTCCCCTTC+AGG 0.247343 tig0021901:-31256 Msa1394900:intron
ATGCTCTGCGCTTGTTCTTA+TGG 0.275437 tig0021901:-30147 Msa1394900:CDS
GGTTCAGTACTTACGCTTAC+TGG 0.283353 tig0021901:-29471 Msa1394900:CDS
TACATAGTTGTATCTAATTA+AGG 0.293695 tig0021901:-31329 Msa1394900:five_prime_UTR
GGAGAATTTCTATGCCCTTT+TGG 0.304880 tig0021901:-28916 Msa1394900:CDS
TTTGTACTTTCCGAAGAATA+AGG 0.337871 tig0021901:+31365 None:intergenic
ACCTTAAACACGAGGGTAAC+AGG 0.338504 tig0021901:-30832 Msa1394900:CDS
CTGCCTTCAGGACTTATTGC+AGG 0.346270 tig0021901:-29765 Msa1394900:intron
AATATCATAGGAGGGAAGTA+TGG 0.346762 tig0021901:-29539 Msa1394900:intron
GGGGCGTGGTCTCTGCCTTC+AGG 0.350007 tig0021901:-29777 Msa1394900:CDS
TACCGGCAGACGAATTGTTT+TGG 0.351152 tig0021901:+29408 None:intergenic
GGGGAAGGAAGAATTCTAGA+AGG 0.369676 tig0021901:+31262 None:intergenic
ACTGAACCGGCAACCAGCTT+GGG 0.373184 tig0021901:+29486 None:intergenic
GGTGGATAAGGCAAACAATA+AGG 0.378088 tig0021901:-29450 Msa1394900:CDS
CTTCCGCAATCTTGCCCAAA+AGG 0.380574 tig0021901:+28901 None:intergenic
TCAAACCCCAAGCTGGTTGC+CGG 0.391074 tig0021901:-29492 Msa1394900:CDS
GGAACCAACTTTGGCTGAAT+GGG 0.405490 tig0021901:-29921 Msa1394900:CDS
CTTTGCTATTTCTTCTTTGG+TGG 0.415934 tig0021901:+28842 None:intergenic
AGTGGCTGAAGAGTTGAAAT+TGG 0.417620 tig0021901:-30490 Msa1394900:CDS
GCCTGCTGATGGTTTCCAAT+GGG 0.420481 tig0021901:-30565 Msa1394900:CDS
TCTGATACCTCCTTATTCTT+CGG 0.428059 tig0021901:-31375 Msa1394900:five_prime_UTR
AGGAATTACAGTAGATAGGT+TGG 0.431039 tig0021901:-28814 Msa1394900:CDS
GGCTGAATGGGCAGATGGTG+TGG 0.432577 tig0021901:-29909 Msa1394900:CDS
TACTGAACCGGCAACCAGCT+TGG 0.433442 tig0021901:+29485 None:intergenic
CAAGGTGTTGGGTGTGTGTA+AGG 0.434469 tig0021901:-26984 Msa1394900:CDS
GGGAACCAACTTTGGCTGAA+TGG 0.437966 tig0021901:-29922 Msa1394900:CDS
GATGATGATTCACTACCTCT+TGG 0.440294 tig0021901:-30447 Msa1394900:CDS
GTATGCAGCAGTTGCATCTT+CGG 0.440704 tig0021901:-30750 Msa1394900:CDS
AAGAGCATCGCGATGAGTAT+AGG 0.444608 tig0021901:-30992 Msa1394900:CDS
CTAAGATTTGGTATTGAAGA+TGG 0.445284 tig0021901:-27034 Msa1394900:CDS
TAAGGAGAGGGTCAGACAAT+TGG 0.454557 tig0021901:-26966 Msa1394900:CDS
AAGGTACTCAGGCTAAGATT+TGG 0.454745 tig0021901:-27046 Msa1394900:CDS
TCAATTGATTGCTCAAATAC+AGG 0.459560 tig0021901:-30083 Msa1394900:intron
GAAGAAACGAAATCCTCTTC+CGG 0.460270 tig0021901:+30606 None:intergenic
GCTTGAGCTTGTTCAACGCT+TGG 0.460500 tig0021901:+26939 None:intergenic
TTTGCTATTTCTTCTTTGGT+GGG 0.461967 tig0021901:+28843 None:intergenic
TTTCGATGGAGCGAGCTGTA+TGG 0.462748 tig0021901:-28761 Msa1394900:CDS
AGACTCGGACACAACTTTCC+AGG 0.467003 tig0021901:-28736 Msa1394900:intron
ATTGGCTTCTTCGCCGGAAG+AGG 0.467488 tig0021901:-30619 Msa1394900:CDS
TCAGAAATTGGCAAGGTGTT+GGG 0.477054 tig0021901:-26995 Msa1394900:CDS
TCAACTATGCTGCCTGCTGA+TGG 0.478314 tig0021901:-30576 Msa1394900:CDS
ATGATGATTCACTACCTCTT+GGG 0.478340 tig0021901:-30446 Msa1394900:intron
TTTATATAATTGCTCAACCT+TGG 0.481097 tig0021901:+26849 None:intergenic
TTCCAAAACAATTCGTCTGC+CGG 0.487773 tig0021901:-29410 Msa1394900:intron
GTCAGAAATTGGCAAGGTGT+TGG 0.493182 tig0021901:-26996 Msa1394900:CDS
TTCGATGGAGCGAGCTGTAT+GGG 0.496745 tig0021901:-28760 Msa1394900:CDS
CTTCAGATTGGCTTCTTCGC+CGG 0.497531 tig0021901:-30625 Msa1394900:intron
AGACTGGCCGACTCTTCACT+TGG 0.501392 tig0021901:-30337 Msa1394900:CDS
GCTGAATGGGCAGATGGTGT+GGG 0.502616 tig0021901:-29908 Msa1394900:CDS
AGTAAGCGTAAGTACTGAAC+CGG 0.503207 tig0021901:+29473 None:intergenic
TTCCGCAATCTTGCCCAAAA+GGG 0.503563 tig0021901:+28902 None:intergenic
GAGTAGGAATTACAGTAGAT+AGG 0.505400 tig0021901:-28818 Msa1394900:CDS
CTTACGCTTACTGGTGGATA+AGG 0.505548 tig0021901:-29462 Msa1394900:CDS
TACAAGAACTCCGCTTTCGA+TGG 0.512841 tig0021901:-28775 Msa1394900:CDS
CTCAAAACAAGCTGCTGCAG+TGG 0.518614 tig0021901:-30508 Msa1394900:CDS
TGCCTGCTGATGGTTTCCAA+TGG 0.519704 tig0021901:-30566 Msa1394900:CDS
ACAAAATCGTGAGGTCAATA+CGG 0.521532 tig0021901:-30309 Msa1394900:CDS
TCTGCCCATTCAGCCAAAGT+TGG 0.529812 tig0021901:+29917 None:intergenic
AGGGAAGTATGGGCCTTATG+AGG 0.530509 tig0021901:-29528 Msa1394900:CDS
GCGAGCTGTATGGGCAGACT+CGG 0.531907 tig0021901:-28751 Msa1394900:CDS
AAGTTGAAAGAAGGACTTGA+CGG 0.532097 tig0021901:-30175 Msa1394900:CDS
TCACATTGCTAAATATTACC+AGG 0.536733 tig0021901:-29798 Msa1394900:CDS
TCCCATTGGAAACCATCAGC+AGG 0.540739 tig0021901:+30564 None:intergenic
TGAGGTTGAGCGTTAAAGTG+TGG 0.544033 tig0021901:-31439 Msa1394900:five_prime_UTR
GAAGGCAGAGACCACGCCCC+TGG 0.545314 tig0021901:+29780 None:intergenic
ATTTGTGAGAAAATCAATAC+CGG 0.546496 tig0021901:-30799 Msa1394900:CDS
CAAGAGTAAGTGCATCCCAT+TGG 0.548221 tig0021901:+30550 None:intergenic
GGTCAATACGGCTTAAAGAA+AGG 0.550085 tig0021901:-30297 Msa1394900:CDS
GGGAAGGAAGAATTCTAGAA+GGG 0.551200 tig0021901:+31263 None:intergenic
CAAAAGAAAGGAAGGTACTC+AGG 0.556105 tig0021901:-27057 Msa1394900:CDS
GTAGGCCAAGAAGAAGCTGC+AGG 0.556382 tig0021901:+31056 None:intergenic
GTTCTTTCCAAGTGAAGAGT+CGG 0.560295 tig0021901:+30330 None:intergenic
AAGAATAAGGAGGTATCAGA+TGG 0.560374 tig0021901:+31378 None:intergenic
AGGAATAAGGGTACCTGAAG+GGG 0.561538 tig0021901:+31243 None:intergenic
ATATCATAGGAGGGAAGTAT+GGG 0.564621 tig0021901:-29538 Msa1394900:intron
TTTGCCTCCAAAAGAAAGGA+AGG 0.566764 tig0021901:-27065 Msa1394900:CDS
GATTCATGCCAACTTACGCC+TGG 0.569755 tig0021901:-29825 Msa1394900:CDS
CACAATGAAGTCGTTTCTGA+AGG 0.570570 tig0021901:+29870 None:intergenic
GAAAAGTTCAAACCCCAAGC+TGG 0.571259 tig0021901:-29499 Msa1394900:CDS
GCAGGAACAGCTTGGTCATG+AGG 0.572256 tig0021901:+31074 None:intergenic
GCTAAATATTACCAGGGGCG+TGG 0.578026 tig0021901:-29791 Msa1394900:CDS
GAAGAAATAGCAAAGCGAGT+AGG 0.578606 tig0021901:-28834 Msa1394900:CDS
AAGAAGCTGCAGGAACAGCT+TGG 0.580401 tig0021901:+31066 None:intergenic
AGCCATGTACGCAACCTCCT+AGG 0.580915 tig0021901:-27091 Msa1394900:CDS
AAAAGTCCGATGTACAAAGA+AGG 0.581605 tig0021901:-30213 Msa1394900:CDS
TTGCTATTTCTTCTTTGGTG+GGG 0.584906 tig0021901:+28844 None:intergenic
GTTGGGTGTGTGTAAGGAGA+GGG 0.590883 tig0021901:-26978 Msa1394900:CDS
CACATTGCTAAATATTACCA+GGG 0.594851 tig0021901:-29797 Msa1394900:CDS
CATCAAGTTGTTGACTAACA+AGG 0.596849 tig0021901:+26912 None:intergenic
TAGGAATAAGGGTACCTGAA+GGG 0.599072 tig0021901:+31242 None:intergenic
TCTTGTAAAAGAACAGAGGT+AGG 0.599319 tig0021901:+31011 None:intergenic
ATCTTTGTCAGAAATTGGCA+AGG 0.600345 tig0021901:-27002 Msa1394900:CDS
GGAAGAATTCTAGAAGGGAA+TGG 0.601143 tig0021901:+31268 None:intergenic
ACGTAACCTTCTTTGTACAT+CGG 0.606013 tig0021901:+30207 None:intergenic
TCTGAAGGTCACGACAGCTA+AGG 0.610151 tig0021901:+29885 None:intergenic
GTGTTGCAAAACAACTAATG+AGG 0.615119 tig0021901:-27114 Msa1394900:CDS
TCTTTACACGTATGAAGTAG+CGG 0.615131 tig0021901:+30969 None:intergenic
CTAGAAGGGAATGGTGTAGA+CGG 0.615333 tig0021901:+31277 None:intergenic
CGTCAACTCATCAACATCGC+CGG 0.618555 tig0021901:+30780 None:intergenic
GTACTTTCCGAAGAATAAGG+AGG 0.622553 tig0021901:+31368 None:intergenic
CTGAACCGGCAACCAGCTTG+GGG 0.623406 tig0021901:+29487 None:intergenic
ATACCTGCAATAAGTCCTGA+AGG 0.625468 tig0021901:+29762 None:intergenic
ACAGCTCGCTCCATCGAAAG+CGG 0.630654 tig0021901:+28765 None:intergenic
ATAAGGGTACCTGAAGGGGA+AGG 0.633867 tig0021901:+31247 None:intergenic
ATTTAGCAATGTGAACTACC+AGG 0.636377 tig0021901:+29807 None:intergenic
CTTCAGAAACGACTTCATTG+TGG 0.636469 tig0021901:-29869 Msa1394900:CDS
TAAAGAAGACAAATCACCCC+AGG 0.636708 tig0021901:-30952 Msa1394900:intron
TCAGTACTTACGCTTACTGG+TGG 0.637515 tig0021901:-29468 Msa1394900:CDS
TGTTGGGTGTGTGTAAGGAG+AGG 0.638170 tig0021901:-26979 Msa1394900:CDS
TTGGAGGCAAAATACCTAGG+AGG 0.638755 tig0021901:+27077 None:intergenic
GGATAAGGCAAACAATAAGG+AGG 0.639166 tig0021901:-29447 Msa1394900:CDS
ACTTTGGCTGAATGGGCAGA+TGG 0.654006 tig0021901:-29914 Msa1394900:CDS
GATAAGGCAAACAATAAGGA+GGG 0.667443 tig0021901:-29446 Msa1394900:CDS
TAAGCTAGAACTAACCCAAG+AGG 0.669306 tig0021901:+30432 None:intergenic
GAAGGGAATGGTGTAGACGG+AGG 0.686200 tig0021901:+31280 None:intergenic
TTGGAAAGAACAAAATCGTG+AGG 0.689756 tig0021901:-30318 Msa1394900:CDS
ACATTGCTAAATATTACCAG+GGG 0.701498 tig0021901:-29796 Msa1394900:CDS
TGAAGGCAACCTTAAACACG+AGG 0.708109 tig0021901:-30840 Msa1394900:intron
ATGCTCTTGTAAAAGAACAG+AGG 0.718644 tig0021901:+31007 None:intergenic
TTGATCAATAGCATACACCA+AGG 0.737692 tig0021901:-26866 Msa1394900:three_prime_UTR
GAAGGCAACCTTAAACACGA+GGG 0.769287 tig0021901:-30839 Msa1394900:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATGTATTAAATAAAATA+AGG + tig0021901:30752-30771 None:intergenic 10.0%
!!! AGATTTTTTTTTTTTTTTTG+AGG - tig0021901:31349-31368 Msa1394900:five_prime_UTR 10.0%
!!! GATTTTTTTTTTTTTTTTGA+GGG - tig0021901:31350-31369 Msa1394900:five_prime_UTR 10.0%
!!! TTATTGATAACAAAAGAAAT+AGG + tig0021901:26928-26947 None:intergenic 15.0%
!!! TCTATATTTTATTTTACTGA+AGG - tig0021901:27291-27310 Msa1394900:intron 15.0%
!! ATCTATTAAAGAAACAAATT+TGG + tig0021901:27488-27507 None:intergenic 15.0%
!! ACATACTTAAATATATGATT+TGG + tig0021901:29945-29964 None:intergenic 15.0%
!! CTATACAATGTATATATATA+TGG + tig0021901:29979-29998 None:intergenic 15.0%
!! CATATATATATACATTGTAT+AGG - tig0021901:29977-29996 Msa1394900:CDS 15.0%
!! AATATGAATAGATAGAATAA+TGG - tig0021901:30531-30550 Msa1394900:CDS 15.0%
!! TACATAGTTGTATCTAATTA+AGG - tig0021901:26819-26838 Msa1394900:three_prime_UTR 20.0%
!! AACAAAAGAAATAGGAATAA+GGG + tig0021901:26920-26939 None:intergenic 20.0%
!! TAACAAAAGAAATAGGAATA+AGG + tig0021901:26921-26940 None:intergenic 20.0%
!! CAAAACATTTCAATGAAATA+TGG + tig0021901:28105-28124 None:intergenic 20.0%
!!! ATTTCATTGAAATGTTTTGT+AGG - tig0021901:28106-28125 Msa1394900:intron 20.0%
!!! TGTAATGGTAGTTATTTTAT+TGG + tig0021901:29131-29150 None:intergenic 20.0%
!! AAAAAATCGTACATTAAAGA+AGG - tig0021901:29272-29291 Msa1394900:intron 20.0%
!! AAAATTGATATTTACGTTGA+AGG + tig0021901:29443-29462 None:intergenic 20.0%
!! TGATAACTGTTTAAACATAT+TGG - tig0021901:29620-29639 Msa1394900:intron 20.0%
!!! TGATCTAAAAAAGAAACTTT+TGG + tig0021901:29757-29776 None:intergenic 20.0%
!!! ATTCTTTTGGTTTAGTATTT+TGG - tig0021901:29908-29927 Msa1394900:CDS 20.0%
!!! TTCTTTTGGTTTAGTATTTT+GGG - tig0021901:29909-29928 Msa1394900:CDS 20.0%
!! ACATGTAAGTAAACTATATT+AGG - tig0021901:30765-30784 Msa1394900:CDS 20.0%
!!! TAATAAGATTTTGGTCAATT+TGG + tig0021901:30965-30984 None:intergenic 20.0%
!!! CTGCAATTATAATAAGATTT+TGG + tig0021901:30974-30993 None:intergenic 20.0%
!! CAAAATCTTATTATAATTGC+AGG - tig0021901:30972-30991 Msa1394900:CDS 20.0%
!! GATACATTACTTGAAAAATA+AGG - tig0021901:31444-31463 Msa1394900:five_prime_UTR 20.0%
! ATTTGTCTTAATTGTTGAGA+AGG - tig0021901:27026-27045 Msa1394900:CDS 25.0%
!!! ATTGATTTTCTCACAAATTG+AGG + tig0021901:27347-27366 None:intergenic 25.0%
! ATTTGTGAGAAAATCAATAC+CGG - tig0021901:27349-27368 Msa1394900:intron 25.0%
! AGTAATAAAAAGCCAAATCA+AGG + tig0021901:27759-27778 None:intergenic 25.0%
! TTAGAGAAAAAGTTGAAAGA+AGG - tig0021901:27964-27983 Msa1394900:intron 25.0%
!! ATGTTTTGTAGGTTCAATTA+AGG - tig0021901:28117-28136 Msa1394900:intron 25.0%
! GAAATAATTTAAACAGCCAT+TGG + tig0021901:28420-28439 None:intergenic 25.0%
! AAAACCTCAAGATAAATGTT+TGG - tig0021901:28450-28469 Msa1394900:intron 25.0%
! TGTTGCAGTAATTATCTTAA+TGG - tig0021901:28544-28563 Msa1394900:intron 25.0%
!! CTTTAACATTCATTTTCTGA+TGG - tig0021901:28585-28604 Msa1394900:intron 25.0%
!! TTTTCTGATGGTAATATCAT+AGG - tig0021901:28597-28616 Msa1394900:intron 25.0%
!!! AGGTTTTATCAAACTAGTTA+AGG + tig0021901:28784-28803 None:intergenic 25.0%
!! ACTAGTTTGATAAAACCTTA+AGG - tig0021901:28786-28805 Msa1394900:CDS 25.0%
! CTAGTTTGATAAAACCTTAA+GGG - tig0021901:28787-28806 Msa1394900:CDS 25.0%
!! TATATGTTTGTTAGTTGAAG+CGG - tig0021901:29007-29026 Msa1394900:intron 25.0%
!! TCTTGTAGTCAATTACATTT+TGG + tig0021901:29668-29687 None:intergenic 25.0%
! GCTTATCTAATATAAACTGT+TGG + tig0021901:29784-29803 None:intergenic 25.0%
! AGTTTATATTAGATAAGCCT+GGG - tig0021901:29786-29805 Msa1394900:CDS 25.0%
! AACATACTACCATAAACATA+AGG - tig0021901:29815-29834 Msa1394900:CDS 25.0%
! ACATACTACCATAAACATAA+GGG - tig0021901:29816-29835 Msa1394900:CDS 25.0%
! TAAACTAGTTAAACAAAACC+AGG - tig0021901:29855-29874 Msa1394900:CDS 25.0%
! TTGAAATACTGAAAAGAGAT+AGG - tig0021901:30287-30306 Msa1394900:CDS 25.0%
!! AATAGATAGAATAATGGAGA+TGG - tig0021901:30537-30556 Msa1394900:CDS 25.0%
! ATTATTATTGAACTTCTCTG+TGG - tig0021901:30567-30586 Msa1394900:CDS 25.0%
!! TACAATTTTACAATTCCTCT+AGG - tig0021901:30660-30679 Msa1394900:intron 25.0%
!!! TATATTAGGCCTTGTTTATT+GGG - tig0021901:30779-30798 Msa1394900:CDS 25.0%
! TTTATATAATTGCTCAACCT+TGG + tig0021901:31302-31321 None:intergenic 25.0%
TTTGTACTTTCCGAAGAATA+AGG + tig0021901:26786-26805 None:intergenic 30.0%
GTATATTGTCTACTTCAGAT+TGG - tig0021901:27511-27530 Msa1394900:intron 30.0%
! TCTAGCTTAATGGTTAACTT+TGG - tig0021901:27730-27749 Msa1394900:intron 30.0%
! CAGTCTGAATCGTAAATTTT+AGG + tig0021901:27797-27816 None:intergenic 30.0%
CTAAAATTTACGATTCAGAC+TGG - tig0021901:27795-27814 Msa1394900:intron 30.0%
TCAATTGATTGCTCAAATAC+AGG - tig0021901:28065-28084 Msa1394900:intron 30.0%
CTGTTGCATATAACACATTA+TGG + tig0021901:28154-28173 None:intergenic 30.0%
CATAATGTGTTATATGCAAC+AGG - tig0021901:28152-28171 Msa1394900:intron 30.0%
! ATCAAACTTCAGTCTCATTT+TGG - tig0021901:28201-28220 Msa1394900:intron 30.0%
TCACATTGCTAAATATTACC+AGG - tig0021901:28350-28369 Msa1394900:intron 30.0%
CACATTGCTAAATATTACCA+GGG - tig0021901:28351-28370 Msa1394900:intron 30.0%
ACATTGCTAAATATTACCAG+GGG - tig0021901:28352-28371 Msa1394900:intron 30.0%
TTAGCCAAACATTTATCTTG+AGG + tig0021901:28457-28476 None:intergenic 30.0%
GATAAATGTTTGGCTAAAGT+TGG - tig0021901:28460-28479 Msa1394900:intron 30.0%
!!! TGTTTTGGAATGCAGAAATA+AGG + tig0021901:28728-28747 None:intergenic 30.0%
!!! AATGAACAGATTGGTTTTAC+CGG + tig0021901:28760-28779 None:intergenic 30.0%
AGTTAAGGAAATGAACAGAT+TGG + tig0021901:28769-28788 None:intergenic 30.0%
AGAAAGTAAACAAACCCTTA+AGG + tig0021901:28804-28823 None:intergenic 30.0%
!! TGTGTTCGTTTTAAATTGCT+AGG - tig0021901:28857-28876 Msa1394900:CDS 30.0%
!! TCGTTTTAAATTGCTAGGAA+AGG - tig0021901:28862-28881 Msa1394900:CDS 30.0%
!! CGTTTTAAATTGCTAGGAAA+GGG - tig0021901:28863-28882 Msa1394900:CDS 30.0%
CAATTGTGATAGAGAAAAGA+TGG - tig0021901:28908-28927 Msa1394900:CDS 30.0%
AAGAAACGTGAGAAGTAAAT+GGG - tig0021901:29040-29059 Msa1394900:intron 30.0%
CTTCAAAATGAGAAAAGCTT+AGG + tig0021901:29067-29086 None:intergenic 30.0%
!! TCGATTCTATTTCTGTAACA+TGG - tig0021901:29190-29209 Msa1394900:intron 30.0%
TTCTCCTGAAAATAATATGC+TGG + tig0021901:29218-29237 None:intergenic 30.0%
!! TTTGCTATTTCTTCTTTGGT+GGG + tig0021901:29308-29327 None:intergenic 30.0%
ATACTTGTGCAAATTTGAGA+TGG + tig0021901:29692-29711 None:intergenic 30.0%
ACAAGTATTAAGTTCTGTTG+TGG - tig0021901:29704-29723 Msa1394900:intron 30.0%
CAGTTTATATTAGATAAGCC+TGG - tig0021901:29785-29804 Msa1394900:CDS 30.0%
! GGTTTCATTCATCATTCTTT+TGG - tig0021901:29895-29914 Msa1394900:CDS 30.0%
AAGCTTGTGAAATATGATGT+TGG - tig0021901:30005-30024 Msa1394900:intron 30.0%
!! TATGATGTTGGTCTTGTTTA+AGG - tig0021901:30017-30036 Msa1394900:intron 30.0%
! ATTTAGTCTAGTTTAACCTG+AGG + tig0021901:30048-30067 None:intergenic 30.0%
AAACCTACTAAATATGCATG+TGG - tig0021901:30076-30095 Msa1394900:intron 30.0%
! ATTTTGTTCCTTACAGAAGT+TGG - tig0021901:30128-30147 Msa1394900:CDS 30.0%
TCAATTCTGTAATAAGAGAG+TGG - tig0021901:30410-30429 Msa1394900:intron 30.0%
TAAGAGAGTGGATCAAATAT+AGG - tig0021901:30422-30441 Msa1394900:intron 30.0%
AAGAGAGTGGATCAAATATA+GGG - tig0021901:30423-30442 Msa1394900:intron 30.0%
TGTTTATGTTGGATTACCTT+GGG + tig0021901:30706-30725 None:intergenic 30.0%
TTGTTTATGTTGGATTACCT+TGG + tig0021901:30707-30726 None:intergenic 30.0%
!! CTATATTAGGCCTTGTTTAT+TGG - tig0021901:30778-30797 Msa1394900:CDS 30.0%
TTAATTTATGCCTGTATGTG+AGG + tig0021901:30877-30896 None:intergenic 30.0%
! CTAAGATTTGGTATTGAAGA+TGG - tig0021901:31114-31133 Msa1394900:intron 30.0%
GAGAAATCTTTGTCAGAAAT+TGG - tig0021901:31141-31160 Msa1394900:intron 30.0%
!! AAGAATAAGGAGGTATCAGA+TGG + tig0021901:26773-26792 None:intergenic 35.0%
TCTGATACCTCCTTATTCTT+CGG - tig0021901:26773-26792 Msa1394900:three_prime_UTR 35.0%
TACTGTGCAGAAAAACTAGT+AGG + tig0021901:27113-27132 None:intergenic 35.0%
TCTTGTAAAAGAACAGAGGT+AGG + tig0021901:27140-27159 None:intergenic 35.0%
ATGCTCTTGTAAAAGAACAG+AGG + tig0021901:27144-27163 None:intergenic 35.0%
TCTTTACACGTATGAAGTAG+CGG + tig0021901:27182-27201 None:intergenic 35.0%
ACACGTAAAAATGTGAACCT+GGG + tig0021901:27216-27235 None:intergenic 35.0%
TACACGTAAAAATGTGAACC+TGG + tig0021901:27217-27236 None:intergenic 35.0%
ATGATGATTCACTACCTCTT+GGG - tig0021901:27702-27721 Msa1394900:intron 35.0%
!! TTGGGTTAGTTCTAGCTTAA+TGG - tig0021901:27720-27739 Msa1394900:intron 35.0%
TAACTTTGGCATCCTTGATT+TGG - tig0021901:27744-27763 Msa1394900:intron 35.0%
TTGGAAAGAACAAAATCGTG+AGG - tig0021901:27830-27849 Msa1394900:intron 35.0%
ACAAAATCGTGAGGTCAATA+CGG - tig0021901:27839-27858 Msa1394900:intron 35.0%
!! GTACATCGGACTTTTTAGTA+AGG + tig0021901:27930-27949 None:intergenic 35.0%
AAAAGTCCGATGTACAAAGA+AGG - tig0021901:27935-27954 Msa1394900:intron 35.0%
ACGTAACCTTCTTTGTACAT+CGG + tig0021901:27944-27963 None:intergenic 35.0%
AAGTTGAAAGAAGGACTTGA+CGG - tig0021901:27973-27992 Msa1394900:intron 35.0%
!! CTCAAAAGTTGCTTTGTTTC+AGG + tig0021901:28030-28049 None:intergenic 35.0%
! AACTTCAGTCTCATTTTGGA+AGG - tig0021901:28205-28224 Msa1394900:intron 35.0%
!! ACTTCAGTCTCATTTTGGAA+GGG - tig0021901:28206-28225 Msa1394900:intron 35.0%
ATTTAGCAATGTGAACTACC+AGG + tig0021901:28344-28363 None:intergenic 35.0%
TCTGATGGTAATATCATAGG+AGG - tig0021901:28600-28619 Msa1394900:intron 35.0%
CTGATGGTAATATCATAGGA+GGG - tig0021901:28601-28620 Msa1394900:intron 35.0%
AATATCATAGGAGGGAAGTA+TGG - tig0021901:28609-28628 Msa1394900:intron 35.0%
! ATATCATAGGAGGGAAGTAT+GGG - tig0021901:28610-28629 Msa1394900:intron 35.0%
GATAAGGCAAACAATAAGGA+GGG - tig0021901:28702-28721 Msa1394900:intron 35.0%
TGTGATAGAGAAAAGATGGA+AGG - tig0021901:28912-28931 Msa1394900:CDS 35.0%
CAAGAAACGTGAGAAGTAAA+TGG - tig0021901:29039-29058 Msa1394900:intron 35.0%
!!! GCTTTTCTCATTTTGAAGTG+TGG - tig0021901:29069-29088 Msa1394900:intron 35.0%
!!! CATTTTGAAGTGTGGATTGT+CGG - tig0021901:29077-29096 Msa1394900:intron 35.0%
AGGCATGGAATTGTTGTATA+TGG - tig0021901:29101-29120 Msa1394900:intron 35.0%
! GGTACCAGCATATTATTTTC+AGG - tig0021901:29211-29230 Msa1394900:intron 35.0%
! GAGAATTTCTATGCCCTTTT+GGG - tig0021901:29233-29252 Msa1394900:intron 35.0%
!! TTGCTATTTCTTCTTTGGTG+GGG + tig0021901:29307-29326 None:intergenic 35.0%
!! CTTTGCTATTTCTTCTTTGG+TGG + tig0021901:29309-29328 None:intergenic 35.0%
!! TCGCTTTGCTATTTCTTCTT+TGG + tig0021901:29312-29331 None:intergenic 35.0%
GAGTAGGAATTACAGTAGAT+AGG - tig0021901:29330-29349 Msa1394900:intron 35.0%
AGGAATTACAGTAGATAGGT+TGG - tig0021901:29334-29353 Msa1394900:intron 35.0%
TAGTAAGTGATATCGTTGCA+GGG + tig0021901:29467-29486 None:intergenic 35.0%
ATCAGTGCAAGCAAAAAACT+CGG + tig0021901:29604-29623 None:intergenic 35.0%
TTAAGTTCTGTTGTGGATGA+TGG - tig0021901:29711-29730 Msa1394900:intron 35.0%
GCTTGATACCCTTATGTTTA+TGG + tig0021901:29827-29846 None:intergenic 35.0%
ACTAGTTAAACAAAACCAGG+TGG - tig0021901:29858-29877 Msa1394900:CDS 35.0%
TTAAACAAAACCAGGTGGTT+TGG - tig0021901:29863-29882 Msa1394900:CDS 35.0%
CAAATGATCCAACTTCTGTA+AGG + tig0021901:30139-30158 None:intergenic 35.0%
! ATCAAGAGGTGCATATTAAC+AGG + tig0021901:30170-30189 None:intergenic 35.0%
TGTTAATATGCACCTCTTGA+TGG - tig0021901:30169-30188 Msa1394900:CDS 35.0%
!! CATTGAGTTTACTTTTGTGC+TGG + tig0021901:30238-30257 None:intergenic 35.0%
ATTGCAACATTAGAGAGAGT+CGG - tig0021901:30317-30336 Msa1394900:CDS 35.0%
! TCTTGCTATGTCTAACGATT+GGG + tig0021901:30452-30471 None:intergenic 35.0%
GACCAAGAAAAGCTAACTAT+TGG - tig0021901:30470-30489 Msa1394900:CDS 35.0%
!!! CTCCAATAGTTAGCTTTTCT+TGG + tig0021901:30475-30494 None:intergenic 35.0%
!! TACGATTCGGTTGTTTATGT+TGG + tig0021901:30717-30736 None:intergenic 35.0%
GACGAACATTTACTACGATT+CGG + tig0021901:30730-30749 None:intergenic 35.0%
AGCATGAATATATCTCTAGC+AGG + tig0021901:30805-30824 None:intergenic 35.0%
GAGATATATTCATGCTAGAG+CGG - tig0021901:30809-30828 Msa1394900:CDS 35.0%
AGATATATTCATGCTAGAGC+GGG - tig0021901:30810-30829 Msa1394900:CDS 35.0%
! GTTTTGCAACACATACAGTT+GGG + tig0021901:31026-31045 None:intergenic 35.0%
! TGTTTTGCAACACATACAGT+TGG + tig0021901:31027-31046 None:intergenic 35.0%
GTGTTGCAAAACAACTAATG+AGG - tig0021901:31034-31053 Msa1394900:CDS 35.0%
! GTATTTTGCCTCCAAAAGAA+AGG - tig0021901:31079-31098 Msa1394900:CDS 35.0%
ATCTTTGTCAGAAATTGGCA+AGG - tig0021901:31146-31165 Msa1394900:intron 35.0%
! CATCAAGTTGTTGACTAACA+AGG + tig0021901:31239-31258 None:intergenic 35.0%
TTGATCAATAGCATACACCA+AGG - tig0021901:31282-31301 Msa1394900:CDS 35.0%
GTACTTTCCGAAGAATAAGG+AGG + tig0021901:26783-26802 None:intergenic 40.0%
! GGAAGAATTCTAGAAGGGAA+TGG + tig0021901:26883-26902 None:intergenic 40.0%
! GGGAAGGAAGAATTCTAGAA+GGG + tig0021901:26888-26907 None:intergenic 40.0%
!! TAGGAATAAGGGTACCTGAA+GGG + tig0021901:26909-26928 None:intergenic 40.0%
!! ATAGGAATAAGGGTACCTGA+AGG + tig0021901:26910-26929 None:intergenic 40.0%
TAAAGAAGACAAATCACCCC+AGG - tig0021901:27196-27215 Msa1394900:intron 40.0%
CACGTAAAAATGTGAACCTG+GGG + tig0021901:27215-27234 None:intergenic 40.0%
GAAGAAACGAAATCCTCTTC+CGG + tig0021901:27545-27564 None:intergenic 40.0%
AGTGGCTGAAGAGTTGAAAT+TGG - tig0021901:27658-27677 Msa1394900:intron 40.0%
GATGATGATTCACTACCTCT+TGG - tig0021901:27701-27720 Msa1394900:intron 40.0%
TAAGCTAGAACTAACCCAAG+AGG + tig0021901:27719-27738 None:intergenic 40.0%
GTTCTTTCCAAGTGAAGAGT+CGG + tig0021901:27821-27840 None:intergenic 40.0%
GGTCAATACGGCTTAAAGAA+AGG - tig0021901:27851-27870 Msa1394900:intron 40.0%
!! TTTTGGAAGGGAACCAACTT+TGG - tig0021901:28218-28237 Msa1394900:intron 40.0%
CACAATGAAGTCGTTTCTGA+AGG + tig0021901:28281-28300 None:intergenic 40.0%
CTTCAGAAACGACTTCATTG+TGG - tig0021901:28279-28298 Msa1394900:intron 40.0%
ATACCTGCAATAAGTCCTGA+AGG + tig0021901:28389-28408 None:intergenic 40.0%
AAAGTTGGAACTGCAGTTGT+AGG - tig0021901:28475-28494 Msa1394900:intron 40.0%
! ACTTTTCGACACTCCTCATA+AGG + tig0021901:28636-28655 None:intergenic 40.0%
!! AGTAAGCGTAAGTACTGAAC+CGG + tig0021901:28678-28697 None:intergenic 40.0%
GGTGGATAAGGCAAACAATA+AGG - tig0021901:28698-28717 Msa1394900:intron 40.0%
GGATAAGGCAAACAATAAGG+AGG - tig0021901:28701-28720 Msa1394900:intron 40.0%
TTCCAAAACAATTCGTCTGC+CGG - tig0021901:28738-28757 Msa1394900:CDS 40.0%
! GGAGAATTTCTATGCCCTTT+TGG - tig0021901:29232-29251 Msa1394900:intron 40.0%
GAAGAAATAGCAAAGCGAGT+AGG - tig0021901:29314-29333 Msa1394900:intron 40.0%
CTAGTAAGTGATATCGTTGC+AGG + tig0021901:29468-29487 None:intergenic 40.0%
! TTCAACTCCCCATTTTGTAC+TGG - tig0021901:29559-29578 Msa1394900:intron 40.0%
CAAATCAAAACCAAACCACC+TGG + tig0021901:29876-29895 None:intergenic 40.0%
!!! CAGGTGGTTTGGTTTTGATT+TGG - tig0021901:29874-29893 Msa1394900:CDS 40.0%
! CTTGTTTAAGGTTGATCCTC+AGG - tig0021901:30029-30048 Msa1394900:intron 40.0%
CTGCCACATGCATATTTAGT+AGG + tig0021901:30082-30101 None:intergenic 40.0%
AATATGCATGTGGCAGTGAT+TGG - tig0021901:30086-30105 Msa1394900:CDS 40.0%
AAAACAGGCATACCATCAAG+AGG + tig0021901:30184-30203 None:intergenic 40.0%
!!! ATGCCTGTTTTTGCAAGTGA+CGG - tig0021901:30193-30212 Msa1394900:CDS 40.0%
TTGCAACATTAGAGAGAGTC+GGG - tig0021901:30318-30337 Msa1394900:CDS 40.0%
AGATGCTTGAATCTCGACTT+AGG - tig0021901:30360-30379 Msa1394900:intron 40.0%
AATCTCGACTTAGGTGGTTT+GGG - tig0021901:30369-30388 Msa1394900:intron 40.0%
! GTCTTGCTATGTCTAACGAT+TGG + tig0021901:30453-30472 None:intergenic 40.0%
AACAGAGTGGTTACACAACA+GGG - tig0021901:30600-30619 Msa1394900:CDS 40.0%
!! TGTATGATGGGTGTATGACA+CGG - tig0021901:30833-30852 Msa1394900:CDS 40.0%
TTTATGCCTGTATGTGAGGT+CGG + tig0021901:30873-30892 None:intergenic 40.0%
!! CTTTTGGAGGCAAAATACCT+AGG + tig0021901:31077-31096 None:intergenic 40.0%
TTTGCCTCCAAAAGAAAGGA+AGG - tig0021901:31083-31102 Msa1394900:CDS 40.0%
! AGTACCTTCCTTTCTTTTGG+AGG + tig0021901:31090-31109 None:intergenic 40.0%
! CTGAGTACCTTCCTTTCTTT+TGG + tig0021901:31093-31112 None:intergenic 40.0%
!! CAAAAGAAAGGAAGGTACTC+AGG - tig0021901:31091-31110 Msa1394900:intron 40.0%
! AAGGTACTCAGGCTAAGATT+TGG - tig0021901:31102-31121 Msa1394900:intron 40.0%
! TCAGAAATTGGCAAGGTGTT+GGG - tig0021901:31153-31172 Msa1394900:intron 40.0%
TGAGGTTGAGCGTTAAAGTG+TGG - tig0021901:26709-26728 Msa1394900:three_prime_UTR 45.0%
CTAGAAGGGAATGGTGTAGA+CGG + tig0021901:26874-26893 None:intergenic 45.0%
GGGGAAGGAAGAATTCTAGA+AGG + tig0021901:26889-26908 None:intergenic 45.0%
AGAATTCTTCCTTCCCCTTC+AGG - tig0021901:26892-26911 Msa1394900:CDS 45.0%
!! AGGAATAAGGGTACCTGAAG+GGG + tig0021901:26908-26927 None:intergenic 45.0%
!! AAGAGCATCGCGATGAGTAT+AGG - tig0021901:27156-27175 Msa1394900:CDS 45.0%
TGAAGGCAACCTTAAACACG+AGG - tig0021901:27308-27327 Msa1394900:intron 45.0%
GAAGGCAACCTTAAACACGA+GGG - tig0021901:27309-27328 Msa1394900:intron 45.0%
ACCTTAAACACGAGGGTAAC+AGG - tig0021901:27316-27335 Msa1394900:intron 45.0%
ACCTGTTACCCTCGTGTTTA+AGG + tig0021901:27320-27339 None:intergenic 45.0%
GTATGCAGCAGTTGCATCTT+CGG - tig0021901:27398-27417 Msa1394900:intron 45.0%
CAAGAGTAAGTGCATCCCAT+TGG + tig0021901:27601-27620 None:intergenic 45.0%
ATGCTCTGCGCTTGTTCTTA+TGG - tig0021901:28001-28020 Msa1394900:intron 45.0%
GGAACCAACTTTGGCTGAAT+GGG - tig0021901:28227-28246 Msa1394900:intron 45.0%
GAAAAGTTCAAACCCCAAGC+TGG - tig0021901:28649-28668 Msa1394900:intron 45.0%
GGTTCAGTACTTACGCTTAC+TGG - tig0021901:28677-28696 Msa1394900:intron 45.0%
TCAGTACTTACGCTTACTGG+TGG - tig0021901:28680-28699 Msa1394900:intron 45.0%
! CTTACGCTTACTGGTGGATA+AGG - tig0021901:28686-28705 Msa1394900:intron 45.0%
! TACCGGCAGACGAATTGTTT+TGG + tig0021901:28743-28762 None:intergenic 45.0%
! TTGAAGTGTGGATTGTCGGT+AGG - tig0021901:29081-29100 Msa1394900:intron 45.0%
TTCCGCAATCTTGCCCAAAA+GGG + tig0021901:29249-29268 None:intergenic 45.0%
TACAAGAACTCCGCTTTCGA+TGG - tig0021901:29373-29392 Msa1394900:intron 45.0%
CCACTCACCAGTACAAAATG+GGG + tig0021901:29569-29588 None:intergenic 45.0%
GCCACTCACCAGTACAAAAT+GGG + tig0021901:29570-29589 None:intergenic 45.0%
GGTAGTATGTTATGCTTCCC+AGG + tig0021901:29806-29825 None:intergenic 45.0%
ACTCCGTCACTTGCAAAAAC+AGG + tig0021901:30199-30218 None:intergenic 45.0%
!! TTTTGCAAGTGACGGAGTGT+TGG - tig0021901:30201-30220 Msa1394900:CDS 45.0%
! TTTGCAAGTGACGGAGTGTT+GGG - tig0021901:30202-30221 Msa1394900:CDS 45.0%
TGCAACATTAGAGAGAGTCG+GGG - tig0021901:30319-30338 Msa1394900:CDS 45.0%
TGCTTGAATCTCGACTTAGG+TGG - tig0021901:30363-30382 Msa1394900:intron 45.0%
GAATCTCGACTTAGGTGGTT+TGG - tig0021901:30368-30387 Msa1394900:intron 45.0%
TGGATAACTGTCCAACAGAG+TGG - tig0021901:30587-30606 Msa1394900:CDS 45.0%
CTGTTGTGTAACCACTCTGT+TGG + tig0021901:30601-30620 None:intergenic 45.0%
CAACAGAGTGGTTACACAAC+AGG - tig0021901:30599-30618 Msa1394900:CDS 45.0%
ACAGAGTGGTTACACAACAG+GGG - tig0021901:30601-30620 Msa1394900:CDS 45.0%
CTAGGCTCTCTAATTCCTAG+AGG + tig0021901:30678-30697 None:intergenic 45.0%
TCTAGCAGGCCCAATAAACA+AGG + tig0021901:30791-30810 None:intergenic 45.0%
TTGGAGGCAAAATACCTAGG+AGG + tig0021901:31074-31093 None:intergenic 45.0%
GTCAGAAATTGGCAAGGTGT+TGG - tig0021901:31152-31171 Msa1394900:intron 45.0%
TAAGGAGAGGGTCAGACAAT+TGG - tig0021901:31182-31201 Msa1394900:intron 45.0%
!!! AAAATGTTTTTTTTTTTAAA+AGG + tig0021901:26744-26763 None:intergenic 5.0%
!! ATTAAAAAAAATTAATGTAA+TGG + tig0021901:29146-29165 None:intergenic 5.0%
!! ATAAGGGTACCTGAAGGGGA+AGG + tig0021901:26904-26923 None:intergenic 50.0%
AAGAAGCTGCAGGAACAGCT+TGG + tig0021901:27085-27104 None:intergenic 50.0%
CTGTTCCTGCAGCTTCTTCT+TGG - tig0021901:27087-27106 Msa1394900:CDS 50.0%
CGTCAACTCATCAACATCGC+CGG + tig0021901:27371-27390 None:intergenic 50.0%
!! CTTCAGATTGGCTTCTTCGC+CGG - tig0021901:27523-27542 Msa1394900:intron 50.0%
TCAACTATGCTGCCTGCTGA+TGG - tig0021901:27572-27591 Msa1394900:intron 50.0%
TGCCTGCTGATGGTTTCCAA+TGG - tig0021901:27582-27601 Msa1394900:intron 50.0%
GCCTGCTGATGGTTTCCAAT+GGG - tig0021901:27583-27602 Msa1394900:intron 50.0%
TCCCATTGGAAACCATCAGC+AGG + tig0021901:27587-27606 None:intergenic 50.0%
!!! CACTGCAGCAGCTTGTTTTG+AGG + tig0021901:27642-27661 None:intergenic 50.0%
CTCAAAACAAGCTGCTGCAG+TGG - tig0021901:27640-27659 Msa1394900:intron 50.0%
GGGAACCAACTTTGGCTGAA+TGG - tig0021901:28226-28245 Msa1394900:intron 50.0%
TCTGCCCATTCAGCCAAAGT+TGG + tig0021901:28234-28253 None:intergenic 50.0%
ACTTTGGCTGAATGGGCAGA+TGG - tig0021901:28234-28253 Msa1394900:intron 50.0%
TCTGAAGGTCACGACAGCTA+AGG + tig0021901:28266-28285 None:intergenic 50.0%
GATTCATGCCAACTTACGCC+TGG - tig0021901:28323-28342 Msa1394900:intron 50.0%
GTGAACTACCAGGCGTAAGT+TGG + tig0021901:28334-28353 None:intergenic 50.0%
GCTAAATATTACCAGGGGCG+TGG - tig0021901:28357-28376 Msa1394900:intron 50.0%
CTGCCTTCAGGACTTATTGC+AGG - tig0021901:28383-28402 Msa1394900:intron 50.0%
! GCAGGTATCGTCACTACCAA+TGG - tig0021901:28401-28420 Msa1394900:intron 50.0%
! AGGGAAGTATGGGCCTTATG+AGG - tig0021901:28620-28639 Msa1394900:intron 50.0%
! TGCCCTTTTGGGCAAGATTG+CGG - tig0021901:29244-29263 Msa1394900:intron 50.0%
CTTCCGCAATCTTGCCCAAA+AGG + tig0021901:29250-29269 None:intergenic 50.0%
TTTCGATGGAGCGAGCTGTA+TGG - tig0021901:29387-29406 Msa1394900:intron 50.0%
TTCGATGGAGCGAGCTGTAT+GGG - tig0021901:29388-29407 Msa1394900:intron 50.0%
AGACTCGGACACAACTTTCC+AGG - tig0021901:29412-29431 Msa1394900:CDS 50.0%
TCGGACACAACTTTCCAGGT+AGG - tig0021901:29416-29435 Msa1394900:CDS 50.0%
CGGACACAACTTTCCAGGTA+GGG - tig0021901:29417-29436 Msa1394900:CDS 50.0%
TTTACGTTGAAGGCCCTACC+TGG + tig0021901:29433-29452 None:intergenic 50.0%
!! CCCCATTTTGTACTGGTGAG+TGG - tig0021901:29566-29585 Msa1394900:intron 50.0%
CGCCACTCACCAGTACAAAA+TGG + tig0021901:29571-29590 None:intergenic 50.0%
GGATTACCTTGGGAGAGACT+AGG + tig0021901:30696-30715 None:intergenic 50.0%
ATGCTAGAGCGGGTGTATGA+TGG - tig0021901:30820-30839 Msa1394900:CDS 50.0%
TGCTAGAGCGGGTGTATGAT+GGG - tig0021901:30821-30840 Msa1394900:CDS 50.0%
CTGTAACCGACCTCACATAC+AGG - tig0021901:30864-30883 Msa1394900:intron 50.0%
TACCTAGGAGGTTGCGTACA+TGG + tig0021901:31062-31081 None:intergenic 50.0%
!! CAAGGTGTTGGGTGTGTGTA+AGG - tig0021901:31164-31183 Msa1394900:intron 50.0%
TGTTGGGTGTGTGTAAGGAG+AGG - tig0021901:31169-31188 Msa1394900:intron 50.0%
GTTGGGTGTGTGTAAGGAGA+GGG - tig0021901:31170-31189 Msa1394900:intron 50.0%
! GCTTGAGCTTGTTCAACGCT+TGG + tig0021901:31212-31231 None:intergenic 50.0%
GAAGGGAATGGTGTAGACGG+AGG + tig0021901:26871-26890 None:intergenic 55.0%
GCAGGAACAGCTTGGTCATG+AGG + tig0021901:27077-27096 None:intergenic 55.0%
GTAGGCCAAGAAGAAGCTGC+AGG + tig0021901:27095-27114 None:intergenic 55.0%
! ATTGGCTTCTTCGCCGGAAG+AGG - tig0021901:27529-27548 Msa1394900:intron 55.0%
! AGACTGGCCGACTCTTCACT+TGG - tig0021901:27811-27830 Msa1394900:intron 55.0%
GCTGAATGGGCAGATGGTGT+GGG - tig0021901:28240-28259 Msa1394900:intron 55.0%
TCAAACCCCAAGCTGGTTGC+CGG - tig0021901:28656-28675 Msa1394900:intron 55.0%
ACTGAACCGGCAACCAGCTT+GGG + tig0021901:28665-28684 None:intergenic 55.0%
TACTGAACCGGCAACCAGCT+TGG + tig0021901:28666-28685 None:intergenic 55.0%
! GTGTGGATTGTCGGTAGGCA+TGG - tig0021901:29086-29105 Msa1394900:intron 55.0%
ACAGCTCGCTCCATCGAAAG+CGG + tig0021901:29386-29405 None:intergenic 55.0%
AGAGAGCCTAGTCTCTCCCA+AGG - tig0021901:30687-30706 Msa1394900:intron 55.0%
AGCCATGTACGCAACCTCCT+AGG - tig0021901:31057-31076 Msa1394900:CDS 55.0%
GGCTGAATGGGCAGATGGTG+TGG - tig0021901:28239-28258 Msa1394900:intron 60.0%
CTGAACCGGCAACCAGCTTG+GGG + tig0021901:28664-28683 None:intergenic 60.0%
GCGAGCTGTATGGGCAGACT+CGG - tig0021901:29397-29416 Msa1394900:intron 60.0%
GAAGGCAGAGACCACGCCCC+TGG + tig0021901:28371-28390 None:intergenic 70.0%
GGGGCGTGGTCTCTGCCTTC+AGG - tig0021901:28371-28390 Msa1394900:intron 70.0%
Chromosome Type Strat End Strand Name
tig0021901 gene 26702 31468 26702 ID=Msa1394900;Name=Msa1394900
tig0021901 mRNA 26702 31468 26702 ID=Msa1394900-mRNA-1;Parent=Msa1394900;Name=Msa1394900-mRNA-1;_AED=0.13;_eAED=0.13;_QI=157|1|1|1|1|1|9|187|553
tig0021901 exon 26702 27176 26702 ID=Msa1394900-mRNA-1:exon:14631;Parent=Msa1394900-mRNA-1
tig0021901 exon 28737 28937 28737 ID=Msa1394900-mRNA-1:exon:14630;Parent=Msa1394900-mRNA-1
tig0021901 exon 29411 29551 29411 ID=Msa1394900-mRNA-1:exon:14629;Parent=Msa1394900-mRNA-1
tig0021901 exon 29766 29996 29766 ID=Msa1394900-mRNA-1:exon:14628;Parent=Msa1394900-mRNA-1
tig0021901 exon 30084 30357 30084 ID=Msa1394900-mRNA-1:exon:14627;Parent=Msa1394900-mRNA-1
tig0021901 exon 30447 30641 30447 ID=Msa1394900-mRNA-1:exon:14626;Parent=Msa1394900-mRNA-1
tig0021901 exon 30733 30857 30733 ID=Msa1394900-mRNA-1:exon:14625;Parent=Msa1394900-mRNA-1
tig0021901 exon 30953 31104 30953 ID=Msa1394900-mRNA-1:exon:14624;Parent=Msa1394900-mRNA-1
tig0021901 exon 31257 31468 31257 ID=Msa1394900-mRNA-1:exon:14623;Parent=Msa1394900-mRNA-1
tig0021901 five_prime_UTR 31312 31468 31312 ID=Msa1394900-mRNA-1:five_prime_utr;Parent=Msa1394900-mRNA-1
tig0021901 CDS 31257 31311 31257 ID=Msa1394900-mRNA-1:cds;Parent=Msa1394900-mRNA-1
tig0021901 CDS 30953 31104 30953 ID=Msa1394900-mRNA-1:cds;Parent=Msa1394900-mRNA-1
tig0021901 CDS 30733 30857 30733 ID=Msa1394900-mRNA-1:cds;Parent=Msa1394900-mRNA-1
tig0021901 CDS 30447 30641 30447 ID=Msa1394900-mRNA-1:cds;Parent=Msa1394900-mRNA-1
tig0021901 CDS 30084 30357 30084 ID=Msa1394900-mRNA-1:cds;Parent=Msa1394900-mRNA-1
tig0021901 CDS 29766 29996 29766 ID=Msa1394900-mRNA-1:cds;Parent=Msa1394900-mRNA-1
tig0021901 CDS 29411 29551 29411 ID=Msa1394900-mRNA-1:cds;Parent=Msa1394900-mRNA-1
tig0021901 CDS 28737 28937 28737 ID=Msa1394900-mRNA-1:cds;Parent=Msa1394900-mRNA-1
tig0021901 CDS 26889 27176 26889 ID=Msa1394900-mRNA-1:cds;Parent=Msa1394900-mRNA-1
tig0021901 three_prime_UTR 26702 26888 26702 ID=Msa1394900-mRNA-1:three_prime_utr;Parent=Msa1394900-mRNA-1
Gene Sequence

>Msa1394900

ATGTTTTCTCCTCCGTCTACACCATTCCCTTCTAGAATTCTTCCTTCCCCTTCAGTTATGATGCCTCATGACCAAGCTGTTCCTGCAGCTTCTTCTTGGCCTACTAGTTTTTCTGCACAGTATTTTCCTACCTCTGTTCTTTTACAAGAGCATCGCGATGAGTATAGGCCGCTACTTCATACGTGTAAAGAAGACAAATCACCCCAGGCAACCTTAAACACGAGGGTAACAGGTGTGACCTCAATTTGTGAGAAAATCAATACCGGCGATGTTGATGAGTTGACGCATAACTGTATGCAGCAGTTGCATCTTCGGTGTCATTTACAAAACTTATTGGCTTCTTCGCCGGAAGAGGATTTCGTTTCTTCTTCTTCTTCAACTATGCTGCCTGCTGATGGTTTCCAATGGGATGCACTTACTCTTGCTAAGCAAGCTCTATCAGCCTCAAAACAAGCTGCTGCAGTGGCTGAAGAGTTGAAATTGGTTAAAATTGACGATGATAATGATGATGATTCACTACCTCTTGGACTGGCCGACTCTTCACTTGGAAAGAACAAAATCGTGAGGTCAATACGGCTTAAAGAAAGGCGATCTAAACAGAGAAAAGTGTCTAACTCAAAAGTTCTTGATGACGAAATGTACCTTACTAAAAAGTCCGATGTACAAAGAAGGTTACGTTTAGAGAAAAAGTTGAAAGAAGGACTTGACGGAAATGATGCTCTGCGCTTGTTCTTATGGAGTCCTGAAACAAAGCAACTTTTGAGCATTGAAGAAGAATCTCAATTGATTGCTCAAATACAGGATTTATTTAAATTAAAAGAAACAAAGATCAAACTTCAGTCTCATTTTGGAAGGGAACCAACTTTGGCTGAATGGGCAGATGGTGTGGGCCTTAGCTGTCGTGACCTTCAGAAACGACTTCATTGTGGTAACAGAAGCAAAGATAAACTGATTCATGCCAACTTACGCCTGGTAGTTCACATTGCTAAATATTACCAGGGGCGTGGTCTCTGCCTTCAGGACTTATTGCAGGAGGGAAGTATGGGCCTTATGAGGAGTGTCGAAAAGTTCAAACCCCAAGCTGGTTGCCGGTTCAGTACTTACGCTTACTGGTGGATAAGGCAAACAATAAGGAGGGCCTTATTTCTGCATTCCAAAACAATTCGTCTGCCGGAGAATTTCTATGCCCTTTTGGGCAAGATTGCGGAAGCAAAAAAATCGTACATTAAAGAAGGAAATCTTCACCCCACCAAAGAAGAAATAGCAAAGCGAGTAGGAATTACAGTAGATAGGTTGGAAATGTTGCTATTTTCTACAAGAACTCCGCTTTCGATGGAGCGAGCTGTATGGGCAGACTCGGACACAACTTTCCAGGAGATTACTGCAGACTCTGCAATTGAGATCCCAACTGTATGTGTTGCAAAACAACTAATGAGGAGCCATGTACGCAACCTCCTAGGTATTTTGCCTCCAAAAGAAAGGAAGGTACTCAGGCTAAGATTTGGTATTGAAGATGGCTATGAGAAATCTTTGTCAGAAATTGGCAAGGTGTTGGGTGTGTGTAAGGAGAGGGTCAGACAATTGGAGAGCCAAGCGTTGAACAAGCTCAAGCAGTGCCTTGTTAGTCAACAACTTGATGCATATGTAGACTTGATTGTATAG

Protein sequence

>Msa1394900

MFSPPSTPFPSRILPSPSVMMPHDQAVPAASSWPTSFSAQYFPTSVLLQEHRDEYRPLLHTCKEDKSPQATLNTRVTGVTSICEKINTGDVDELTHNCMQQLHLRCHLQNLLASSPEEDFVSSSSSTMLPADGFQWDALTLAKQALSASKQAAAVAEELKLVKIDDDNDDDSLPLGLADSSLGKNKIVRSIRLKERRSKQRKVSNSKVLDDEMYLTKKSDVQRRLRLEKKLKEGLDGNDALRLFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRDLQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGLCLQDLLQEGSMGLMRSVEKFKPQAGCRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEIAKRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSAIEIPTVCVAKQLMRSHVRNLLGILPPKERKVLRLRFGIEDGYEKSLSEIGKVLGVCKERVRQLESQALNKLKQCLVSQQLDAYVDLIV*