AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0968780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968780 MtrunA17_Chr7g0264491 82.509 566 37 10 1 513 1 557 0.0 868
Msa0968780 MtrunA17_Chr1g0180881 50.538 558 217 10 4 513 15 561 5.22e-174 502
Msa0968780 MtrunA17_Chr3g0145921 31.070 383 225 6 165 508 187 569 2.00e-40 153
Msa0968780 MtrunA17_Chr3g0090001 29.412 238 139 2 301 509 165 402 6.60e-22 97.8
Msa0968780 MtrunA17_Chr1g0146481 24.510 306 195 4 236 511 250 549 3.35e-21 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968780 AT2G36990.1 44.963 536 236 9 19 513 30 547 1.32e-133 398
Msa0968780 AT1G08540.1 33.968 315 179 4 224 509 254 568 1.35e-48 177
Msa0968780 AT3G53920.1 25.597 293 188 3 248 510 278 570 3.73e-22 100
Msa0968780 AT5G13730.1 27.027 296 184 5 242 508 122 414 1.40e-17 85.5

Find 116 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAAAGTTGCTTTGTTTC+AGG 0.090588 6_4:+184796 None:intergenic
ACCTGTTACCCTCGTGTTTA+AGG 0.141819 6_4:+185506 None:intergenic
CTGTTCCTGCAGCTTCTTCT+TGG 0.172620 6_4:-185735 Msa0968780:CDS
ATCAAACTTCAGTCTCATTT+TGG 0.184227 6_4:-184622 Msa0968780:CDS
GAGAAATCTTTGTCAGAAAT+TGG 0.213726 6_4:-181684 Msa0968780:CDS
CTGAGTACCTTCCTTTCTTT+TGG 0.217852 6_4:+181735 None:intergenic
TCGCTTTGCTATTTCTTCTT+TGG 0.231759 6_4:+183516 None:intergenic
AGAATTCTTCCTTCCCCTTC+AGG 0.247343 6_4:-185930 Msa0968780:intron
ATGCTCTGCGCTTGTTCTTA+TGG 0.275437 6_4:-184822 Msa0968780:CDS
GGTTCAGTACTTACGCTTAC+TGG 0.283353 6_4:-184147 Msa0968780:intron
TACATAGTTGTATCTAATTA+AGG 0.293695 6_4:-186003 Msa0968780:five_prime_UTR
GGAGAATTTCTATGCCCTTT+TGG 0.304880 6_4:-183593 Msa0968780:CDS
TTTGTACTTTCCGAAGAATA+AGG 0.337871 6_4:+186039 None:intergenic
ACCTTAAACACGAGGGTAAC+AGG 0.338504 6_4:-185507 Msa0968780:CDS
AATATCATAGGAGGGAAGTA+TGG 0.346762 6_4:-184215 Msa0968780:intron
GGGGAAGGAAGAATTCTAGA+AGG 0.369676 6_4:+185936 None:intergenic
ACTGAACCGGCAACCAGCTT+GGG 0.373184 6_4:+184162 None:intergenic
CTTCCGCAATCTTGCCCAAA+AGG 0.380574 6_4:+183578 None:intergenic
TCAAACCCCAAGCTGGTTGC+CGG 0.391074 6_4:-184168 Msa0968780:CDS
GGAACCAACTTTGGCTGAAT+GGG 0.405490 6_4:-184596 Msa0968780:CDS
CTTTGCTATTTCTTCTTTGG+TGG 0.415934 6_4:+183519 None:intergenic
AGTGGCTGAAGAGTTGAAAT+TGG 0.417620 6_4:-185165 Msa0968780:CDS
GCCTGCTGATGGTTTCCAAT+GGG 0.420481 6_4:-185240 Msa0968780:CDS
TCTGATACCTCCTTATTCTT+CGG 0.428059 6_4:-186049 Msa0968780:five_prime_UTR
AGGAATTACAGTAGATAGGT+TGG 0.431039 6_4:-183491 Msa0968780:CDS
GGCTGAATGGGCAGATGGTG+TGG 0.432577 6_4:-184584 Msa0968780:CDS
TACTGAACCGGCAACCAGCT+TGG 0.433442 6_4:+184161 None:intergenic
CAAGGTGTTGGGTGTGTGTA+AGG 0.434469 6_4:-181661 Msa0968780:CDS
GGGAACCAACTTTGGCTGAA+TGG 0.437966 6_4:-184597 Msa0968780:CDS
GATGATGATTCACTACCTCT+TGG 0.440294 6_4:-185122 Msa0968780:CDS
GTATGCAGCAGTTGCATCTT+CGG 0.440704 6_4:-185425 Msa0968780:CDS
AAGAGCATCGCGATGAGTAT+AGG 0.444608 6_4:-185666 Msa0968780:CDS
CTAAGATTTGGTATTGAAGA+TGG 0.445284 6_4:-181711 Msa0968780:CDS
TAAGGAGAGGGTCAGACAAT+TGG 0.454557 6_4:-181643 Msa0968780:CDS
AAGGTACTCAGGCTAAGATT+TGG 0.454745 6_4:-181723 Msa0968780:CDS
TCAATTGATTGCTCAAATAC+AGG 0.459560 6_4:-184758 Msa0968780:intron
GAAGAAACGAAATCCTCTTC+CGG 0.460270 6_4:+185281 None:intergenic
GCTTGAGCTTGTTCAACGCT+TGG 0.460500 6_4:+181616 None:intergenic
TTTGCTATTTCTTCTTTGGT+GGG 0.461967 6_4:+183520 None:intergenic
TTTCGATGGAGCGAGCTGTA+TGG 0.462748 6_4:-183438 Msa0968780:CDS
AGACTCGGACACAACTTTCC+AGG 0.467003 6_4:-183413 Msa0968780:intron
ATTGGCTTCTTCGCCGGAAG+AGG 0.467488 6_4:-185294 Msa0968780:CDS
TCAGAAATTGGCAAGGTGTT+GGG 0.477054 6_4:-181672 Msa0968780:CDS
TCAACTATGCTGCCTGCTGA+TGG 0.478314 6_4:-185251 Msa0968780:CDS
ATGATGATTCACTACCTCTT+GGG 0.478340 6_4:-185121 Msa0968780:intron
TTTATATAATTGCTCAACCT+TGG 0.481097 6_4:+181525 None:intergenic
GTCAGAAATTGGCAAGGTGT+TGG 0.493182 6_4:-181673 Msa0968780:CDS
TTCGATGGAGCGAGCTGTAT+GGG 0.496745 6_4:-183437 Msa0968780:CDS
CTTCAGATTGGCTTCTTCGC+CGG 0.497531 6_4:-185300 Msa0968780:intron
AGACTGGCCGACTCTTCACT+TGG 0.501392 6_4:-185012 Msa0968780:CDS
GCTGAATGGGCAGATGGTGT+GGG 0.502616 6_4:-184583 Msa0968780:CDS
AGTAAGCGTAAGTACTGAAC+CGG 0.503207 6_4:+184149 None:intergenic
TTCCGCAATCTTGCCCAAAA+GGG 0.503563 6_4:+183579 None:intergenic
GAGTAGGAATTACAGTAGAT+AGG 0.505400 6_4:-183495 Msa0968780:CDS
TACAAGAACTCCGCTTTCGA+TGG 0.512841 6_4:-183452 Msa0968780:CDS
CTCAAAACAAGCTGCTGCAG+TGG 0.518614 6_4:-185183 Msa0968780:CDS
TGCCTGCTGATGGTTTCCAA+TGG 0.519704 6_4:-185241 Msa0968780:CDS
ACAAAATCGTGAGGTCAATA+CGG 0.521532 6_4:-184984 Msa0968780:CDS
TCTGCCCATTCAGCCAAAGT+TGG 0.529812 6_4:+184592 None:intergenic
AGGGAAGTATGGGCCTTATG+AGG 0.530509 6_4:-184204 Msa0968780:CDS
GCGAGCTGTATGGGCAGACT+CGG 0.531907 6_4:-183428 Msa0968780:CDS
AAGTTGAAAGAAGGACTTGA+CGG 0.532097 6_4:-184850 Msa0968780:CDS
TCACATTGCTAAATATTACC+AGG 0.536733 6_4:-184473 Msa0968780:CDS
TCCCATTGGAAACCATCAGC+AGG 0.540739 6_4:+185239 None:intergenic
TGAGGTTGAGCGTTAAAGTG+TGG 0.544033 6_4:-186113 Msa0968780:five_prime_UTR
GAAGGCAGAGACCACGCCCC+TGG 0.545314 6_4:+184455 None:intergenic
ATTTGTGAGAAAATCAATAC+CGG 0.546496 6_4:-185474 Msa0968780:CDS
CAAGAGTAAGTGCATCCCAT+TGG 0.548221 6_4:+185225 None:intergenic
GGTCAATACGGCTTAAAGAA+AGG 0.550085 6_4:-184972 Msa0968780:CDS
GGGAAGGAAGAATTCTAGAA+GGG 0.551200 6_4:+185937 None:intergenic
CAAAAGAAAGGAAGGTACTC+AGG 0.556105 6_4:-181734 Msa0968780:CDS
GTAGGCCAAGAAGAAGCTGC+AGG 0.556382 6_4:+185730 None:intergenic
GTTCTTTCCAAGTGAAGAGT+CGG 0.560295 6_4:+185005 None:intergenic
AAGAATAAGGAGGTATCAGA+TGG 0.560374 6_4:+186052 None:intergenic
AGGAATAAGGGTACCTGAAG+GGG 0.561538 6_4:+185917 None:intergenic
ATATCATAGGAGGGAAGTAT+GGG 0.564621 6_4:-184214 Msa0968780:intron
TTTGCCTCCAAAAGAAAGGA+AGG 0.566764 6_4:-181742 Msa0968780:CDS
GATTCATGCCAACTTACGCC+TGG 0.569755 6_4:-184500 Msa0968780:CDS
CACAATGAAGTCGTTTCTGA+AGG 0.570570 6_4:+184545 None:intergenic
GAAAAGTTCAAACCCCAAGC+TGG 0.571259 6_4:-184175 Msa0968780:CDS
GCAGGAACAGCTTGGTCATG+AGG 0.572256 6_4:+185748 None:intergenic
GCTAAATATTACCAGGGGCG+TGG 0.578026 6_4:-184466 Msa0968780:intron
GAAGAAATAGCAAAGCGAGT+AGG 0.578606 6_4:-183511 Msa0968780:CDS
AAGAAGCTGCAGGAACAGCT+TGG 0.580401 6_4:+185740 None:intergenic
AGCCATGTACGCAACCTCCT+AGG 0.580915 6_4:-181768 Msa0968780:CDS
TTGCTATTTCTTCTTTGGTG+GGG 0.584906 6_4:+183521 None:intergenic
GTTGGGTGTGTGTAAGGAGA+GGG 0.590883 6_4:-181655 Msa0968780:CDS
CACATTGCTAAATATTACCA+GGG 0.594851 6_4:-184472 Msa0968780:CDS
CATCAAGTTGTTGACTAACA+AGG 0.596849 6_4:+181589 None:intergenic
TAGGAATAAGGGTACCTGAA+GGG 0.599072 6_4:+185916 None:intergenic
TCTTGTAAAAGAACAGAGGT+AGG 0.599319 6_4:+185685 None:intergenic
ATCTTTGTCAGAAATTGGCA+AGG 0.600345 6_4:-181679 Msa0968780:CDS
GGAAGAATTCTAGAAGGGAA+TGG 0.601143 6_4:+185942 None:intergenic
TCTGAAGGTCACGACAGCTA+AGG 0.610151 6_4:+184560 None:intergenic
GTGTTGCAAAACAACTAATG+AGG 0.615119 6_4:-181791 Msa0968780:CDS
TCTTTACACGTATGAAGTAG+CGG 0.615131 6_4:+185643 None:intergenic
CTAGAAGGGAATGGTGTAGA+CGG 0.615333 6_4:+185951 None:intergenic
CGTCAACTCATCAACATCGC+CGG 0.618555 6_4:+185455 None:intergenic
GTACTTTCCGAAGAATAAGG+AGG 0.622553 6_4:+186042 None:intergenic
CTGAACCGGCAACCAGCTTG+GGG 0.623406 6_4:+184163 None:intergenic
ACAGCTCGCTCCATCGAAAG+CGG 0.630654 6_4:+183442 None:intergenic
ATAAGGGTACCTGAAGGGGA+AGG 0.633867 6_4:+185921 None:intergenic
ATTTAGCAATGTGAACTACC+AGG 0.636377 6_4:+184482 None:intergenic
CTTCAGAAACGACTTCATTG+TGG 0.636469 6_4:-184544 Msa0968780:CDS
TAAAGAAGACAAATCACCCC+AGG 0.636708 6_4:-185626 Msa0968780:intron
TGTTGGGTGTGTGTAAGGAG+AGG 0.638170 6_4:-181656 Msa0968780:CDS
TTGGAGGCAAAATACCTAGG+AGG 0.638755 6_4:+181754 None:intergenic
ACTTTGGCTGAATGGGCAGA+TGG 0.654006 6_4:-184589 Msa0968780:CDS
TAAGCTAGAACTAACCCAAG+AGG 0.669306 6_4:+185107 None:intergenic
GAAGGGAATGGTGTAGACGG+AGG 0.686200 6_4:+185954 None:intergenic
TTGGAAAGAACAAAATCGTG+AGG 0.689756 6_4:-184993 Msa0968780:CDS
ACATTGCTAAATATTACCAG+GGG 0.701498 6_4:-184471 Msa0968780:CDS
TGAAGGCAACCTTAAACACG+AGG 0.708109 6_4:-185515 Msa0968780:intron
ATGCTCTTGTAAAAGAACAG+AGG 0.718644 6_4:+185681 None:intergenic
TGATCAATAGCATTACACCA+AGG 0.724280 6_4:-181542 Msa0968780:three_prime_UTR
GAAGGCAACCTTAAACACGA+GGG 0.769287 6_4:-185514 Msa0968780:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATGTATTAAATAAAATA+AGG + chr6_4:185516-185535 None:intergenic 10.0%
!!! TTAGATTTTTTTTTTTTTTG+AGG - chr6_4:186109-186128 Msa0968780:five_prime_UTR 10.0%
!!! TAGATTTTTTTTTTTTTTGA+GGG - chr6_4:186110-186129 Msa0968780:five_prime_UTR 10.0%
!!! TTATTGATAACAAAAGAAAT+AGG + chr6_4:181695-181714 None:intergenic 15.0%
!!! TCTATATTTTATTTTACTGA+AGG - chr6_4:182057-182076 Msa0968780:intron 15.0%
!! ATCTATTAAAGAAACAAATT+TGG + chr6_4:182254-182273 None:intergenic 15.0%
!! ACATACTTAAATATATGATT+TGG + chr6_4:184709-184728 None:intergenic 15.0%
!! CTATACAATGTATATATATA+TGG + chr6_4:184743-184762 None:intergenic 15.0%
!! CATATATATATACATTGTAT+AGG - chr6_4:184741-184760 Msa0968780:intron 15.0%
!! AATATGAATAGATAGAATAA+TGG - chr6_4:185295-185314 Msa0968780:CDS 15.0%
!! TACATAGTTGTATCTAATTA+AGG - chr6_4:181586-181605 Msa0968780:CDS 20.0%
!! AACAAAAGAAATAGGAATAA+GGG + chr6_4:181687-181706 None:intergenic 20.0%
!! TAACAAAAGAAATAGGAATA+AGG + chr6_4:181688-181707 None:intergenic 20.0%
!! CAAAACATTTCAATGAAATA+TGG + chr6_4:182871-182890 None:intergenic 20.0%
!!! ATTTCATTGAAATGTTTTGT+AGG - chr6_4:182872-182891 Msa0968780:intron 20.0%
!!! TGTAATGGTAGTTATTTTAT+TGG + chr6_4:183896-183915 None:intergenic 20.0%
!! AAAAAATCGTACATTAAAGA+AGG - chr6_4:184036-184055 Msa0968780:intron 20.0%
!! AAAATTGATATTTACGTTGA+AGG + chr6_4:184207-184226 None:intergenic 20.0%
!! TGATAACTGTTTAAACATAT+TGG - chr6_4:184383-184402 Msa0968780:intron 20.0%
!!! GATCTAATAAAAGAAACTTT+TGG + chr6_4:184520-184539 None:intergenic 20.0%
!!! ATTCTTTTGGTTTAGTATTT+TGG - chr6_4:184672-184691 Msa0968780:intron 20.0%
!!! TTCTTTTGGTTTAGTATTTT+GGG - chr6_4:184673-184692 Msa0968780:intron 20.0%
!! ACATGTAAGTAAACTATATT+AGG - chr6_4:185529-185548 Msa0968780:intron 20.0%
!!! TAATAAGATTTTGGTCAATT+TGG + chr6_4:185729-185748 None:intergenic 20.0%
!!! CTGCAATTATAATAAGATTT+TGG + chr6_4:185738-185757 None:intergenic 20.0%
!! CAAAATCTTATTATAATTGC+AGG - chr6_4:185736-185755 Msa0968780:CDS 20.0%
! ATTTGTCTTAATTGTTGAGA+AGG - chr6_4:181793-181812 Msa0968780:CDS 25.0%
!!! ATTGATTTTCTCACAAATTG+AGG + chr6_4:182113-182132 None:intergenic 25.0%
! ATTTGTGAGAAAATCAATAC+CGG - chr6_4:182115-182134 Msa0968780:intron 25.0%
! AGTAATAAAAAGCCAAATCA+AGG + chr6_4:182525-182544 None:intergenic 25.0%
! TTAGAGAAAAAGTTGAAAGA+AGG - chr6_4:182730-182749 Msa0968780:intron 25.0%
!! ATGTTTTGTAGGTTCAATTA+AGG - chr6_4:182883-182902 Msa0968780:intron 25.0%
! GAAATAATTTAAACAGCCAT+TGG + chr6_4:183186-183205 None:intergenic 25.0%
! AAAACCTCAAGATAAATGTT+TGG - chr6_4:183216-183235 Msa0968780:intron 25.0%
! TGTTGCAGTAATTATCTTAA+TGG - chr6_4:183309-183328 Msa0968780:intron 25.0%
!! CTTTAACATTCATTTTCTGA+TGG - chr6_4:183350-183369 Msa0968780:intron 25.0%
!! TTTTCTGATGGTAATATCAT+AGG - chr6_4:183362-183381 Msa0968780:intron 25.0%
!!! AGGTTTTATCAAACTAGTTA+AGG + chr6_4:183549-183568 None:intergenic 25.0%
!! ACTAGTTTGATAAAACCTTA+AGG - chr6_4:183551-183570 Msa0968780:CDS 25.0%
! CTAGTTTGATAAAACCTTAA+GGG - chr6_4:183552-183571 Msa0968780:CDS 25.0%
!! TATATGTTTGTTAGTTGAAG+CGG - chr6_4:183772-183791 Msa0968780:intron 25.0%
!! TCTTGTAGTCAATTACATTT+TGG + chr6_4:184431-184450 None:intergenic 25.0%
! GCTTATCTAATATAAACTGT+TGG + chr6_4:184548-184567 None:intergenic 25.0%
! AGTTTATATTAGATAAGCCT+GGG - chr6_4:184550-184569 Msa0968780:CDS 25.0%
! AACATACTACCATAAACATA+AGG - chr6_4:184579-184598 Msa0968780:CDS 25.0%
! ACATACTACCATAAACATAA+GGG - chr6_4:184580-184599 Msa0968780:CDS 25.0%
! TAAACTAGTTAAACAAAACC+AGG - chr6_4:184619-184638 Msa0968780:CDS 25.0%
! TTGAAATACTGAAAAGAGAT+AGG - chr6_4:185051-185070 Msa0968780:intron 25.0%
!! AATAGATAGAATAATGGAGA+TGG - chr6_4:185301-185320 Msa0968780:intron 25.0%
! ATTATTATTGAACTTCTCTG+TGG - chr6_4:185331-185350 Msa0968780:intron 25.0%
!! TACAATTTTACAATTCCTCT+AGG - chr6_4:185424-185443 Msa0968780:CDS 25.0%
!!! TATATTAGGCCTTGTTTATT+GGG - chr6_4:185543-185562 Msa0968780:intron 25.0%
! TTTATATAATTGCTCAACCT+TGG + chr6_4:186067-186086 None:intergenic 25.0%
TTTGTACTTTCCGAAGAATA+AGG + chr6_4:181553-181572 None:intergenic 30.0%
GTATATTGTCTACTTCAGAT+TGG - chr6_4:182277-182296 Msa0968780:intron 30.0%
! TCTAGCTTAATGGTTAACTT+TGG - chr6_4:182496-182515 Msa0968780:intron 30.0%
! CAGTCTGAATCGTAAATTTT+AGG + chr6_4:182563-182582 None:intergenic 30.0%
CTAAAATTTACGATTCAGAC+TGG - chr6_4:182561-182580 Msa0968780:intron 30.0%
TCAATTGATTGCTCAAATAC+AGG - chr6_4:182831-182850 Msa0968780:intron 30.0%
CTGTTGCATATAACACATTA+TGG + chr6_4:182920-182939 None:intergenic 30.0%
CATAATGTGTTATATGCAAC+AGG - chr6_4:182918-182937 Msa0968780:intron 30.0%
! ATCAAACTTCAGTCTCATTT+TGG - chr6_4:182967-182986 Msa0968780:intron 30.0%
TCACATTGCTAAATATTACC+AGG - chr6_4:183116-183135 Msa0968780:intron 30.0%
CACATTGCTAAATATTACCA+GGG - chr6_4:183117-183136 Msa0968780:intron 30.0%
ACATTGCTAAATATTACCAG+GGG - chr6_4:183118-183137 Msa0968780:intron 30.0%
TTAGCCAAACATTTATCTTG+AGG + chr6_4:183223-183242 None:intergenic 30.0%
GATAAATGTTTGGCTAAAGT+TGG - chr6_4:183226-183245 Msa0968780:intron 30.0%
!!! TGTTTTGGAATGCAGAAATA+AGG + chr6_4:183493-183512 None:intergenic 30.0%
!!! AATGAACAGATTGGTTTTAC+CGG + chr6_4:183525-183544 None:intergenic 30.0%
AGTTAAGGAAATGAACAGAT+TGG + chr6_4:183534-183553 None:intergenic 30.0%
AGAAAGTAAACAAACCCTTA+AGG + chr6_4:183569-183588 None:intergenic 30.0%
!! TGTGTTCGTTTTAAATTGCT+AGG - chr6_4:183622-183641 Msa0968780:intron 30.0%
!! TCGTTTTAAATTGCTAGGAA+AGG - chr6_4:183627-183646 Msa0968780:intron 30.0%
!! CGTTTTAAATTGCTAGGAAA+GGG - chr6_4:183628-183647 Msa0968780:intron 30.0%
CAATTGTGATAGAGAAAAGA+TGG - chr6_4:183673-183692 Msa0968780:intron 30.0%
AAGAAACGTGAGAAGTAAAT+GGG - chr6_4:183805-183824 Msa0968780:intron 30.0%
CTTCAAAATGAGAAAAGCTT+AGG + chr6_4:183832-183851 None:intergenic 30.0%
!! TCGATTCTATTTCTGTAACA+TGG - chr6_4:183954-183973 Msa0968780:intron 30.0%
TTCTCCTGAAAATAATATGC+TGG + chr6_4:183982-184001 None:intergenic 30.0%
!! TTTGCTATTTCTTCTTTGGT+GGG + chr6_4:184072-184091 None:intergenic 30.0%
ATACTTGTGCAAATTTGAGA+TGG + chr6_4:184455-184474 None:intergenic 30.0%
ACAAGTATTAAGTTCTGTTG+TGG - chr6_4:184467-184486 Msa0968780:CDS 30.0%
CAGTTTATATTAGATAAGCC+TGG - chr6_4:184549-184568 Msa0968780:CDS 30.0%
! GGTTTCATTCATCATTCTTT+TGG - chr6_4:184659-184678 Msa0968780:intron 30.0%
AAGCTTGTGAAATATGATGT+TGG - chr6_4:184769-184788 Msa0968780:CDS 30.0%
!! TATGATGTTGGTCTTGTTTA+AGG - chr6_4:184781-184800 Msa0968780:CDS 30.0%
! ATTTAGTCTAGTTTAACCTG+AGG + chr6_4:184812-184831 None:intergenic 30.0%
AAACCTACTAAATATGCATG+TGG - chr6_4:184840-184859 Msa0968780:CDS 30.0%
! ATTTTGTTCCTTACAGAAGT+TGG - chr6_4:184892-184911 Msa0968780:intron 30.0%
TCAATTCTGTAATAAGAGAG+TGG - chr6_4:185174-185193 Msa0968780:CDS 30.0%
TAAGAGAGTGGATCAAATAT+AGG - chr6_4:185186-185205 Msa0968780:CDS 30.0%
AAGAGAGTGGATCAAATATA+GGG - chr6_4:185187-185206 Msa0968780:CDS 30.0%
TGTTTATGTTGGATTACCTT+GGG + chr6_4:185470-185489 None:intergenic 30.0%
TTGTTTATGTTGGATTACCT+TGG + chr6_4:185471-185490 None:intergenic 30.0%
!! CTATATTAGGCCTTGTTTAT+TGG - chr6_4:185542-185561 Msa0968780:intron 30.0%
TTAATTTATGCCTGTATGTG+AGG + chr6_4:185641-185660 None:intergenic 30.0%
! CTAAGATTTGGTATTGAAGA+TGG - chr6_4:185878-185897 Msa0968780:intron 30.0%
GAGAAATCTTTGTCAGAAAT+TGG - chr6_4:185905-185924 Msa0968780:intron 30.0%
!! AAGAATAAGGAGGTATCAGA+TGG + chr6_4:181540-181559 None:intergenic 35.0%
TCTGATACCTCCTTATTCTT+CGG - chr6_4:181540-181559 Msa0968780:three_prime_UTR 35.0%
TACTGTGCAGAAAAACTAGT+AGG + chr6_4:181880-181899 None:intergenic 35.0%
TCTTGTAAAAGAACAGAGGT+AGG + chr6_4:181907-181926 None:intergenic 35.0%
ATGCTCTTGTAAAAGAACAG+AGG + chr6_4:181911-181930 None:intergenic 35.0%
TCTTTACACGTATGAAGTAG+CGG + chr6_4:181949-181968 None:intergenic 35.0%
ACACGTAAAAATGTGAACCT+GGG + chr6_4:181983-182002 None:intergenic 35.0%
TACACGTAAAAATGTGAACC+TGG + chr6_4:181984-182003 None:intergenic 35.0%
ATGATGATTCACTACCTCTT+GGG - chr6_4:182468-182487 Msa0968780:intron 35.0%
!! TTGGGTTAGTTCTAGCTTAA+TGG - chr6_4:182486-182505 Msa0968780:intron 35.0%
TAACTTTGGCATCCTTGATT+TGG - chr6_4:182510-182529 Msa0968780:intron 35.0%
TTGGAAAGAACAAAATCGTG+AGG - chr6_4:182596-182615 Msa0968780:intron 35.0%
ACAAAATCGTGAGGTCAATA+CGG - chr6_4:182605-182624 Msa0968780:intron 35.0%
!! GTACATCGGACTTTTTAGTA+AGG + chr6_4:182696-182715 None:intergenic 35.0%
AAAAGTCCGATGTACAAAGA+AGG - chr6_4:182701-182720 Msa0968780:intron 35.0%
ACGTAACCTTCTTTGTACAT+CGG + chr6_4:182710-182729 None:intergenic 35.0%
AAGTTGAAAGAAGGACTTGA+CGG - chr6_4:182739-182758 Msa0968780:intron 35.0%
!! CTCAAAAGTTGCTTTGTTTC+AGG + chr6_4:182796-182815 None:intergenic 35.0%
! AACTTCAGTCTCATTTTGGA+AGG - chr6_4:182971-182990 Msa0968780:intron 35.0%
!! ACTTCAGTCTCATTTTGGAA+GGG - chr6_4:182972-182991 Msa0968780:intron 35.0%
ATTTAGCAATGTGAACTACC+AGG + chr6_4:183110-183129 None:intergenic 35.0%
TCTGATGGTAATATCATAGG+AGG - chr6_4:183365-183384 Msa0968780:intron 35.0%
CTGATGGTAATATCATAGGA+GGG - chr6_4:183366-183385 Msa0968780:intron 35.0%
AATATCATAGGAGGGAAGTA+TGG - chr6_4:183374-183393 Msa0968780:intron 35.0%
! ATATCATAGGAGGGAAGTAT+GGG - chr6_4:183375-183394 Msa0968780:intron 35.0%
GATAAGGCAAACAATAAGGA+GGG - chr6_4:183467-183486 Msa0968780:CDS 35.0%
TGTGATAGAGAAAAGATGGA+AGG - chr6_4:183677-183696 Msa0968780:intron 35.0%
CAAGAAACGTGAGAAGTAAA+TGG - chr6_4:183804-183823 Msa0968780:intron 35.0%
!!! GCTTTTCTCATTTTGAAGTG+TGG - chr6_4:183834-183853 Msa0968780:intron 35.0%
!!! CATTTTGAAGTGTGGATTGT+CGG - chr6_4:183842-183861 Msa0968780:intron 35.0%
AGGCATGGAATTGTTGTATA+TGG - chr6_4:183866-183885 Msa0968780:intron 35.0%
! GGTACCAGCATATTATTTTC+AGG - chr6_4:183975-183994 Msa0968780:intron 35.0%
! GAGAATTTCTATGCCCTTTT+GGG - chr6_4:183997-184016 Msa0968780:intron 35.0%
!! TTGCTATTTCTTCTTTGGTG+GGG + chr6_4:184071-184090 None:intergenic 35.0%
!! CTTTGCTATTTCTTCTTTGG+TGG + chr6_4:184073-184092 None:intergenic 35.0%
!! TCGCTTTGCTATTTCTTCTT+TGG + chr6_4:184076-184095 None:intergenic 35.0%
GAGTAGGAATTACAGTAGAT+AGG - chr6_4:184094-184113 Msa0968780:intron 35.0%
AGGAATTACAGTAGATAGGT+TGG - chr6_4:184098-184117 Msa0968780:intron 35.0%
TAGTAAGTGATATCGTTGCA+GGG + chr6_4:184231-184250 None:intergenic 35.0%
ATCAGTGCAAGCAAAAAACT+CGG + chr6_4:184367-184386 None:intergenic 35.0%
TTAAGTTCTGTTGTGGATGA+TGG - chr6_4:184474-184493 Msa0968780:CDS 35.0%
GCTTGATACCCTTATGTTTA+TGG + chr6_4:184591-184610 None:intergenic 35.0%
ACTAGTTAAACAAAACCAGG+TGG - chr6_4:184622-184641 Msa0968780:CDS 35.0%
TTAAACAAAACCAGGTGGTT+TGG - chr6_4:184627-184646 Msa0968780:CDS 35.0%
CAAATGATCCAACTTCTGTA+AGG + chr6_4:184903-184922 None:intergenic 35.0%
! ATCAAGAGGTGCATATTAAC+AGG + chr6_4:184934-184953 None:intergenic 35.0%
TGTTAATATGCACCTCTTGA+TGG - chr6_4:184933-184952 Msa0968780:CDS 35.0%
!! CATTGAGTTTACTTTTGTGC+TGG + chr6_4:185002-185021 None:intergenic 35.0%
ATTGCAACATTAGAGAGAGT+CGG - chr6_4:185081-185100 Msa0968780:intron 35.0%
! TCTTGCTATGTCTAACGATT+GGG + chr6_4:185216-185235 None:intergenic 35.0%
GACCAAGAAAAGCTAACTAT+TGG - chr6_4:185234-185253 Msa0968780:CDS 35.0%
!!! CTCCAATAGTTAGCTTTTCT+TGG + chr6_4:185239-185258 None:intergenic 35.0%
!! TACGATTCGGTTGTTTATGT+TGG + chr6_4:185481-185500 None:intergenic 35.0%
GACGAACATTTACTACGATT+CGG + chr6_4:185494-185513 None:intergenic 35.0%
AGCATGAATATATCTCTAGC+AGG + chr6_4:185569-185588 None:intergenic 35.0%
GAGATATATTCATGCTAGAG+CGG - chr6_4:185573-185592 Msa0968780:intron 35.0%
AGATATATTCATGCTAGAGC+GGG - chr6_4:185574-185593 Msa0968780:intron 35.0%
! GTTTTGCAACACATACAGTT+GGG + chr6_4:185790-185809 None:intergenic 35.0%
! TGTTTTGCAACACATACAGT+TGG + chr6_4:185791-185810 None:intergenic 35.0%
GTGTTGCAAAACAACTAATG+AGG - chr6_4:185798-185817 Msa0968780:intron 35.0%
! GTATTTTGCCTCCAAAAGAA+AGG - chr6_4:185843-185862 Msa0968780:intron 35.0%
ATCTTTGTCAGAAATTGGCA+AGG - chr6_4:185910-185929 Msa0968780:intron 35.0%
! CATCAAGTTGTTGACTAACA+AGG + chr6_4:186003-186022 None:intergenic 35.0%
TGATCAATAGCATTACACCA+AGG - chr6_4:186047-186066 Msa0968780:five_prime_UTR 35.0%
GTACTTTCCGAAGAATAAGG+AGG + chr6_4:181550-181569 None:intergenic 40.0%
! GGAAGAATTCTAGAAGGGAA+TGG + chr6_4:181650-181669 None:intergenic 40.0%
! GGGAAGGAAGAATTCTAGAA+GGG + chr6_4:181655-181674 None:intergenic 40.0%
!! TAGGAATAAGGGTACCTGAA+GGG + chr6_4:181676-181695 None:intergenic 40.0%
!! ATAGGAATAAGGGTACCTGA+AGG + chr6_4:181677-181696 None:intergenic 40.0%
TAAAGAAGACAAATCACCCC+AGG - chr6_4:181963-181982 Msa0968780:intron 40.0%
CACGTAAAAATGTGAACCTG+GGG + chr6_4:181982-182001 None:intergenic 40.0%
GAAGAAACGAAATCCTCTTC+CGG + chr6_4:182311-182330 None:intergenic 40.0%
AGTGGCTGAAGAGTTGAAAT+TGG - chr6_4:182424-182443 Msa0968780:intron 40.0%
GATGATGATTCACTACCTCT+TGG - chr6_4:182467-182486 Msa0968780:intron 40.0%
TAAGCTAGAACTAACCCAAG+AGG + chr6_4:182485-182504 None:intergenic 40.0%
GTTCTTTCCAAGTGAAGAGT+CGG + chr6_4:182587-182606 None:intergenic 40.0%
GGTCAATACGGCTTAAAGAA+AGG - chr6_4:182617-182636 Msa0968780:intron 40.0%
!! TTTTGGAAGGGAACCAACTT+TGG - chr6_4:182984-183003 Msa0968780:intron 40.0%
CACAATGAAGTCGTTTCTGA+AGG + chr6_4:183047-183066 None:intergenic 40.0%
CTTCAGAAACGACTTCATTG+TGG - chr6_4:183045-183064 Msa0968780:intron 40.0%
ATACCTGCAATAAGTCCTGA+AGG + chr6_4:183155-183174 None:intergenic 40.0%
AAAGTTGGAACTGCAGTTGT+AGG - chr6_4:183241-183260 Msa0968780:intron 40.0%
! ACTTTTCGACACTCCTCATA+AGG + chr6_4:183401-183420 None:intergenic 40.0%
!! AGTAAGCGTAAGTACTGAAC+CGG + chr6_4:183443-183462 None:intergenic 40.0%
GGTGGATAAGGCAAACAATA+AGG - chr6_4:183463-183482 Msa0968780:CDS 40.0%
GGATAAGGCAAACAATAAGG+AGG - chr6_4:183466-183485 Msa0968780:CDS 40.0%
TTCCAAAACAATTCGTCTGC+CGG - chr6_4:183503-183522 Msa0968780:CDS 40.0%
! GGAGAATTTCTATGCCCTTT+TGG - chr6_4:183996-184015 Msa0968780:intron 40.0%
GAAGAAATAGCAAAGCGAGT+AGG - chr6_4:184078-184097 Msa0968780:intron 40.0%
CTAGTAAGTGATATCGTTGC+AGG + chr6_4:184232-184251 None:intergenic 40.0%
! TTCAACTCCCCATTTTGTAC+TGG - chr6_4:184322-184341 Msa0968780:intron 40.0%
CAAATCAAAACCAAACCACC+TGG + chr6_4:184640-184659 None:intergenic 40.0%
!!! CAGGTGGTTTGGTTTTGATT+TGG - chr6_4:184638-184657 Msa0968780:CDS 40.0%
! CTTGTTTAAGGTTGATCCTC+AGG - chr6_4:184793-184812 Msa0968780:CDS 40.0%
CTGCCACATGCATATTTAGT+AGG + chr6_4:184846-184865 None:intergenic 40.0%
AATATGCATGTGGCAGTGAT+TGG - chr6_4:184850-184869 Msa0968780:CDS 40.0%
AAAACAGGCATACCATCAAG+AGG + chr6_4:184948-184967 None:intergenic 40.0%
!!! ATGCCTGTTTTTGCAAGTGA+CGG - chr6_4:184957-184976 Msa0968780:CDS 40.0%
TTGCAACATTAGAGAGAGTC+GGG - chr6_4:185082-185101 Msa0968780:intron 40.0%
AGATGCTTGAATCTCGACTT+AGG - chr6_4:185124-185143 Msa0968780:CDS 40.0%
AATCTCGACTTAGGTGGTTT+GGG - chr6_4:185133-185152 Msa0968780:CDS 40.0%
! GTCTTGCTATGTCTAACGAT+TGG + chr6_4:185217-185236 None:intergenic 40.0%
AACAGAGTGGTTACACAACA+GGG - chr6_4:185364-185383 Msa0968780:intron 40.0%
!! TGTATGATGGGTGTATGACA+CGG - chr6_4:185597-185616 Msa0968780:intron 40.0%
TTTATGCCTGTATGTGAGGT+CGG + chr6_4:185637-185656 None:intergenic 40.0%
!! CTTTTGGAGGCAAAATACCT+AGG + chr6_4:185841-185860 None:intergenic 40.0%
TTTGCCTCCAAAAGAAAGGA+AGG - chr6_4:185847-185866 Msa0968780:intron 40.0%
! AGTACCTTCCTTTCTTTTGG+AGG + chr6_4:185854-185873 None:intergenic 40.0%
! CTGAGTACCTTCCTTTCTTT+TGG + chr6_4:185857-185876 None:intergenic 40.0%
!! CAAAAGAAAGGAAGGTACTC+AGG - chr6_4:185855-185874 Msa0968780:intron 40.0%
! AAGGTACTCAGGCTAAGATT+TGG - chr6_4:185866-185885 Msa0968780:intron 40.0%
! TCAGAAATTGGCAAGGTGTT+GGG - chr6_4:185917-185936 Msa0968780:intron 40.0%
TGAGGTTGAGCGTTAAAGTG+TGG - chr6_4:181476-181495 Msa0968780:three_prime_UTR 45.0%
CTAGAAGGGAATGGTGTAGA+CGG + chr6_4:181641-181660 None:intergenic 45.0%
GGGGAAGGAAGAATTCTAGA+AGG + chr6_4:181656-181675 None:intergenic 45.0%
AGAATTCTTCCTTCCCCTTC+AGG - chr6_4:181659-181678 Msa0968780:CDS 45.0%
!! AGGAATAAGGGTACCTGAAG+GGG + chr6_4:181675-181694 None:intergenic 45.0%
!! AAGAGCATCGCGATGAGTAT+AGG - chr6_4:181923-181942 Msa0968780:intron 45.0%
TGAAGGCAACCTTAAACACG+AGG - chr6_4:182074-182093 Msa0968780:intron 45.0%
GAAGGCAACCTTAAACACGA+GGG - chr6_4:182075-182094 Msa0968780:intron 45.0%
ACCTTAAACACGAGGGTAAC+AGG - chr6_4:182082-182101 Msa0968780:intron 45.0%
ACCTGTTACCCTCGTGTTTA+AGG + chr6_4:182086-182105 None:intergenic 45.0%
GTATGCAGCAGTTGCATCTT+CGG - chr6_4:182164-182183 Msa0968780:intron 45.0%
CAAGAGTAAGTGCATCCCAT+TGG + chr6_4:182367-182386 None:intergenic 45.0%
ATGCTCTGCGCTTGTTCTTA+TGG - chr6_4:182767-182786 Msa0968780:intron 45.0%
GGAACCAACTTTGGCTGAAT+GGG - chr6_4:182993-183012 Msa0968780:intron 45.0%
GAAAAGTTCAAACCCCAAGC+TGG - chr6_4:183414-183433 Msa0968780:CDS 45.0%
GGTTCAGTACTTACGCTTAC+TGG - chr6_4:183442-183461 Msa0968780:CDS 45.0%
TCAGTACTTACGCTTACTGG+TGG - chr6_4:183445-183464 Msa0968780:CDS 45.0%
! CTTACGCTTACTGGTGGATA+AGG - chr6_4:183451-183470 Msa0968780:CDS 45.0%
! TACCGGCAGACGAATTGTTT+TGG + chr6_4:183508-183527 None:intergenic 45.0%
! TTGAAGTGTGGATTGTCGGT+AGG - chr6_4:183846-183865 Msa0968780:intron 45.0%
TTCCGCAATCTTGCCCAAAA+GGG + chr6_4:184013-184032 None:intergenic 45.0%
TACAAGAACTCCGCTTTCGA+TGG - chr6_4:184137-184156 Msa0968780:intron 45.0%
CCACTCACCAGTACAAAATG+GGG + chr6_4:184332-184351 None:intergenic 45.0%
GCCACTCACCAGTACAAAAT+GGG + chr6_4:184333-184352 None:intergenic 45.0%
GGTAGTATGTTATGCTTCCC+AGG + chr6_4:184570-184589 None:intergenic 45.0%
ACTCCGTCACTTGCAAAAAC+AGG + chr6_4:184963-184982 None:intergenic 45.0%
!! TTTTGCAAGTGACGGAGTGT+TGG - chr6_4:184965-184984 Msa0968780:CDS 45.0%
! TTTGCAAGTGACGGAGTGTT+GGG - chr6_4:184966-184985 Msa0968780:CDS 45.0%
TGCAACATTAGAGAGAGTCG+GGG - chr6_4:185083-185102 Msa0968780:intron 45.0%
TGCTTGAATCTCGACTTAGG+TGG - chr6_4:185127-185146 Msa0968780:CDS 45.0%
GAATCTCGACTTAGGTGGTT+TGG - chr6_4:185132-185151 Msa0968780:CDS 45.0%
TGGATAACTGTCCAACAGAG+TGG - chr6_4:185351-185370 Msa0968780:intron 45.0%
CTGTTGTGTAACCACTCTGT+TGG + chr6_4:185365-185384 None:intergenic 45.0%
CAACAGAGTGGTTACACAAC+AGG - chr6_4:185363-185382 Msa0968780:intron 45.0%
ACAGAGTGGTTACACAACAG+GGG - chr6_4:185365-185384 Msa0968780:intron 45.0%
CTAGGCTCTCTAATTCCTAG+AGG + chr6_4:185442-185461 None:intergenic 45.0%
TCTAGCAGGCCCAATAAACA+AGG + chr6_4:185555-185574 None:intergenic 45.0%
TTGGAGGCAAAATACCTAGG+AGG + chr6_4:185838-185857 None:intergenic 45.0%
GTCAGAAATTGGCAAGGTGT+TGG - chr6_4:185916-185935 Msa0968780:intron 45.0%
TAAGGAGAGGGTCAGACAAT+TGG - chr6_4:185946-185965 Msa0968780:CDS 45.0%
!!! AAAATGTTTTTTTTTTTAAA+AGG + chr6_4:181511-181530 None:intergenic 5.0%
!! TATTAAAAAAATTAATGTAA+TGG + chr6_4:183911-183930 None:intergenic 5.0%
!! ATAAGGGTACCTGAAGGGGA+AGG + chr6_4:181671-181690 None:intergenic 50.0%
AAGAAGCTGCAGGAACAGCT+TGG + chr6_4:181852-181871 None:intergenic 50.0%
CTGTTCCTGCAGCTTCTTCT+TGG - chr6_4:181854-181873 Msa0968780:intron 50.0%
CGTCAACTCATCAACATCGC+CGG + chr6_4:182137-182156 None:intergenic 50.0%
!! CTTCAGATTGGCTTCTTCGC+CGG - chr6_4:182289-182308 Msa0968780:intron 50.0%
TCAACTATGCTGCCTGCTGA+TGG - chr6_4:182338-182357 Msa0968780:intron 50.0%
TGCCTGCTGATGGTTTCCAA+TGG - chr6_4:182348-182367 Msa0968780:intron 50.0%
GCCTGCTGATGGTTTCCAAT+GGG - chr6_4:182349-182368 Msa0968780:intron 50.0%
TCCCATTGGAAACCATCAGC+AGG + chr6_4:182353-182372 None:intergenic 50.0%
!!! CACTGCAGCAGCTTGTTTTG+AGG + chr6_4:182408-182427 None:intergenic 50.0%
CTCAAAACAAGCTGCTGCAG+TGG - chr6_4:182406-182425 Msa0968780:intron 50.0%
GGGAACCAACTTTGGCTGAA+TGG - chr6_4:182992-183011 Msa0968780:intron 50.0%
TCTGCCCATTCAGCCAAAGT+TGG + chr6_4:183000-183019 None:intergenic 50.0%
ACTTTGGCTGAATGGGCAGA+TGG - chr6_4:183000-183019 Msa0968780:intron 50.0%
TCTGAAGGTCACGACAGCTA+AGG + chr6_4:183032-183051 None:intergenic 50.0%
GATTCATGCCAACTTACGCC+TGG - chr6_4:183089-183108 Msa0968780:intron 50.0%
GTGAACTACCAGGCGTAAGT+TGG + chr6_4:183100-183119 None:intergenic 50.0%
GCTAAATATTACCAGGGGCG+TGG - chr6_4:183123-183142 Msa0968780:intron 50.0%
CTGCCTTCAGGACTTATTGC+AGG - chr6_4:183149-183168 Msa0968780:intron 50.0%
! GCAGGTATCGTCACTACCAA+TGG - chr6_4:183167-183186 Msa0968780:intron 50.0%
! AGGGAAGTATGGGCCTTATG+AGG - chr6_4:183385-183404 Msa0968780:intron 50.0%
! TGCCCTTTTGGGCAAGATTG+CGG - chr6_4:184008-184027 Msa0968780:intron 50.0%
CTTCCGCAATCTTGCCCAAA+AGG + chr6_4:184014-184033 None:intergenic 50.0%
TTTCGATGGAGCGAGCTGTA+TGG - chr6_4:184151-184170 Msa0968780:CDS 50.0%
TTCGATGGAGCGAGCTGTAT+GGG - chr6_4:184152-184171 Msa0968780:CDS 50.0%
AGACTCGGACACAACTTTCC+AGG - chr6_4:184176-184195 Msa0968780:CDS 50.0%
TCGGACACAACTTTCCAGGT+AGG - chr6_4:184180-184199 Msa0968780:CDS 50.0%
CGGACACAACTTTCCAGGTA+GGG - chr6_4:184181-184200 Msa0968780:CDS 50.0%
TTTACGTTGAAGGCCCTACC+TGG + chr6_4:184197-184216 None:intergenic 50.0%
!! CCCCATTTTGTACTGGTGAG+TGG - chr6_4:184329-184348 Msa0968780:intron 50.0%
CGCCACTCACCAGTACAAAA+TGG + chr6_4:184334-184353 None:intergenic 50.0%
GGATTACCTTGGGAGAGACT+AGG + chr6_4:185460-185479 None:intergenic 50.0%
ATGCTAGAGCGGGTGTATGA+TGG - chr6_4:185584-185603 Msa0968780:intron 50.0%
TGCTAGAGCGGGTGTATGAT+GGG - chr6_4:185585-185604 Msa0968780:intron 50.0%
CTGTAACCGACCTCACATAC+AGG - chr6_4:185628-185647 Msa0968780:CDS 50.0%
TACCTAGGAGGTTGCGTACA+TGG + chr6_4:185826-185845 None:intergenic 50.0%
!! CAAGGTGTTGGGTGTGTGTA+AGG - chr6_4:185928-185947 Msa0968780:intron 50.0%
TGTTGGGTGTGTGTAAGGAG+AGG - chr6_4:185933-185952 Msa0968780:CDS 50.0%
GTTGGGTGTGTGTAAGGAGA+GGG - chr6_4:185934-185953 Msa0968780:CDS 50.0%
! GCTTGAGCTTGTTCAACGCT+TGG + chr6_4:185976-185995 None:intergenic 50.0%
GAAGGGAATGGTGTAGACGG+AGG + chr6_4:181638-181657 None:intergenic 55.0%
GCAGGAACAGCTTGGTCATG+AGG + chr6_4:181844-181863 None:intergenic 55.0%
GTAGGCCAAGAAGAAGCTGC+AGG + chr6_4:181862-181881 None:intergenic 55.0%
! ATTGGCTTCTTCGCCGGAAG+AGG - chr6_4:182295-182314 Msa0968780:intron 55.0%
! AGACTGGCCGACTCTTCACT+TGG - chr6_4:182577-182596 Msa0968780:intron 55.0%
GCTGAATGGGCAGATGGTGT+GGG - chr6_4:183006-183025 Msa0968780:intron 55.0%
TCAAACCCCAAGCTGGTTGC+CGG - chr6_4:183421-183440 Msa0968780:CDS 55.0%
ACTGAACCGGCAACCAGCTT+GGG + chr6_4:183430-183449 None:intergenic 55.0%
TACTGAACCGGCAACCAGCT+TGG + chr6_4:183431-183450 None:intergenic 55.0%
! GTGTGGATTGTCGGTAGGCA+TGG - chr6_4:183851-183870 Msa0968780:intron 55.0%
ACAGCTCGCTCCATCGAAAG+CGG + chr6_4:184150-184169 None:intergenic 55.0%
AGAGAGCCTAGTCTCTCCCA+AGG - chr6_4:185451-185470 Msa0968780:CDS 55.0%
AGCCATGTACGCAACCTCCT+AGG - chr6_4:185821-185840 Msa0968780:intron 55.0%
GGCTGAATGGGCAGATGGTG+TGG - chr6_4:183005-183024 Msa0968780:intron 60.0%
CTGAACCGGCAACCAGCTTG+GGG + chr6_4:183429-183448 None:intergenic 60.0%
GCGAGCTGTATGGGCAGACT+CGG - chr6_4:184161-184180 Msa0968780:CDS 60.0%
GAAGGCAGAGACCACGCCCC+TGG + chr6_4:183137-183156 None:intergenic 70.0%
GGGGCGTGGTCTCTGCCTTC+AGG - chr6_4:183137-183156 Msa0968780:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 181469 186142 181469 ID=Msa0968780;Name=Msa0968780
chr6_4 mRNA 181469 186142 181469 ID=Msa0968780-mRNA-1;Parent=Msa0968780;Name=Msa0968780-mRNA-1;_AED=0.16;_eAED=0.16;_QI=157|0.66|0.6|1|0.66|0.6|10|97|513
chr6_4 exon 181469 181853 181469 ID=Msa0968780-mRNA-1:exon:118;Parent=Msa0968780-mRNA-1
chr6_4 exon 183414 183614 183414 ID=Msa0968780-mRNA-1:exon:117;Parent=Msa0968780-mRNA-1
chr6_4 exon 184148 184227 184148 ID=Msa0968780-mRNA-1:exon:116;Parent=Msa0968780-mRNA-1
chr6_4 exon 184467 184671 184467 ID=Msa0968780-mRNA-1:exon:115;Parent=Msa0968780-mRNA-1
chr6_4 exon 184759 184888 184759 ID=Msa0968780-mRNA-1:exon:114;Parent=Msa0968780-mRNA-1
chr6_4 exon 184922 185032 184922 ID=Msa0968780-mRNA-1:exon:113;Parent=Msa0968780-mRNA-1
chr6_4 exon 185122 185316 185122 ID=Msa0968780-mRNA-1:exon:112;Parent=Msa0968780-mRNA-1
chr6_4 exon 185408 185532 185408 ID=Msa0968780-mRNA-1:exon:111;Parent=Msa0968780-mRNA-1
chr6_4 exon 185627 185778 185627 ID=Msa0968780-mRNA-1:exon:110;Parent=Msa0968780-mRNA-1
chr6_4 exon 185931 186142 185931 ID=Msa0968780-mRNA-1:exon:109;Parent=Msa0968780-mRNA-1
chr6_4 five_prime_UTR 185986 186142 185986 ID=Msa0968780-mRNA-1:five_prime_utr;Parent=Msa0968780-mRNA-1
chr6_4 CDS 185931 185985 185931 ID=Msa0968780-mRNA-1:cds;Parent=Msa0968780-mRNA-1
chr6_4 CDS 185627 185778 185627 ID=Msa0968780-mRNA-1:cds;Parent=Msa0968780-mRNA-1
chr6_4 CDS 185408 185532 185408 ID=Msa0968780-mRNA-1:cds;Parent=Msa0968780-mRNA-1
chr6_4 CDS 185122 185316 185122 ID=Msa0968780-mRNA-1:cds;Parent=Msa0968780-mRNA-1
chr6_4 CDS 184922 185032 184922 ID=Msa0968780-mRNA-1:cds;Parent=Msa0968780-mRNA-1
chr6_4 CDS 184759 184888 184759 ID=Msa0968780-mRNA-1:cds;Parent=Msa0968780-mRNA-1
chr6_4 CDS 184467 184671 184467 ID=Msa0968780-mRNA-1:cds;Parent=Msa0968780-mRNA-1
chr6_4 CDS 184148 184227 184148 ID=Msa0968780-mRNA-1:cds;Parent=Msa0968780-mRNA-1
chr6_4 CDS 183414 183614 183414 ID=Msa0968780-mRNA-1:cds;Parent=Msa0968780-mRNA-1
chr6_4 CDS 181566 181853 181566 ID=Msa0968780-mRNA-1:cds;Parent=Msa0968780-mRNA-1
chr6_4 three_prime_UTR 181469 181565 181469 ID=Msa0968780-mRNA-1:three_prime_utr;Parent=Msa0968780-mRNA-1
Gene Sequence

>Msa0968780

ATGTTTTCTCCTCCGTCTACACCATTCCCTTCTAGAATTCTTCCTTCCCCTTCAGTTATGATGCCTCATGACCAAGCTGTTCCTGCAGCTTCTTCTTGGCCTACTAGTTTTTCTGCACAGTATTTTCCTACCTCTGTTCTTTTACAAGAGCATCGCGATGAGTATAGGCCGCTACTTCATACGTGTAAAGAAGACAAATCACCCCAGGCAACCTTAAACACGAGGGTAACAGGTGTGACCTCAATTTGTGAGAAAATCAATACCGGCGATGTTGATGAGTTGACGCATAACTGTATGCAGCAGTTGCATCTTCGGTGTCATTTACAAAACTTATTGGCTTCTTCGCCGGAAGAGGATTTCGTTTCTTCTTCTTCTTCAACTATGCTGCCTGCTGATGGTTTCCAATGGGATGCACTTACTCTTGCTAAGCAAGCTCTATCAGCCTCAAAACAAGCTGCTGCAGTGGCTGAAGAGTTGAAATTGGTTAAAATTGACGATGATAATGATGATGATTCACTACCTCTTGGACTGGCCGACTCTTCACTTGGAAAGAACAAAATCGTGAGGTCAATACGGCTTAAAGAAAGGCGATCTAAACAGAGAAAAGTGTCTAACTCAAAAGTTCTTGATGACGAAATGTTACGTTTAGAGAAAAAGTTGAAAGAAGGACTTGACGGAAATGATGCTCTGCGCTTGTTCTTATGGAGTCCTGAAACAAAGCAACTTTTGAGCATTGAAGAAGAATCTCAATTGATTGCTCAAATACAGGATTTATTTAAATTAAAAGAAACAAAGATCAAACTTCAGTCTCATTTTGGAAGGGAACCAACTTTGGCTGAATGGGCAGATGGTGTGGGCCTTAGCTGTCGTGACCTTCAGAAACGACTTCATTGTGGTAACAGAAGCAAAGATAAACTGATTCATGCCAACTTACGCCTGGTAGTTCACATTGCTAAATATTACCAGGGGCGTGGAGGGAAGTATGGGCCTTATGAGGAGTGTCGAAAAGTTCAAACCCCAAGCTGGTTGCCGGTTCAGTACTTACGCTTACTGGAGAATTTCTATGCCCTTTTGGGCAAGATTGCGGAAGCAAAAAAATCGTACATTAAAGAAGGAAATCTTCACCCCACCAAAGAAGAAATAGCAAAGCGAGTAGGAATTACAGTAGATAGGTTGGAAATGTTGCTATTTTCTACAAGAACTCCGCTTTCGATGGAGCGAGCTGTATGGGCAGACTCGGACACAACTTTCCAGGAGATTACTGCAGACTCTGCAATTGAGATCCCAACTGTATGTGTTGCAAAACAACTAATGAGGAGCCATGTACGCAACCTCCTAGGTATTTTGCCTCCAAAAGAAAGGAAGGTACTCAGGCTAAGATTTGGTATTGAAGATGGCTATGAGAAATCTTTGTCAGAAATTGGCAAGGTGTTGGGTGTGTGTAAGGAGAGGGTCAGACAATTGGAGAGCCAAGCGTTGAACAAGCTCAAGCAGTGCCTTGTTAGTCAACAACTTGATGCATATGTAGACTTGATTGTATAG

Protein sequence

>Msa0968780

MFSPPSTPFPSRILPSPSVMMPHDQAVPAASSWPTSFSAQYFPTSVLLQEHRDEYRPLLHTCKEDKSPQATLNTRVTGVTSICEKINTGDVDELTHNCMQQLHLRCHLQNLLASSPEEDFVSSSSSTMLPADGFQWDALTLAKQALSASKQAAAVAEELKLVKIDDDNDDDSLPLGLADSSLGKNKIVRSIRLKERRSKQRKVSNSKVLDDEMLRLEKKLKEGLDGNDALRLFLWSPETKQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRDLQKRLHCGNRSKDKLIHANLRLVVHIAKYYQGRGGKYGPYEECRKVQTPSWLPVQYLRLLENFYALLGKIAEAKKSYIKEGNLHPTKEEIAKRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSAIEIPTVCVAKQLMRSHVRNLLGILPPKERKVLRLRFGIEDGYEKSLSEIGKVLGVCKERVRQLESQALNKLKQCLVSQQLDAYVDLIV*